lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 111 11 1 111 66666 1111 11 222222222 5555555555555555555555555555555555555 1 1 222222222222222 55555555555555555555555555555555 111 2222222222 111 111 3333333333333 8888888888888 111111 11 11 22222222 5555555555555555555555555555555555555 44444444444444444 11 444444444 2222 1 2222222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1 222222222 3333333333 1111 11111 111 111 111 1 333333333333333 1 1 1 11 1111111
lowQualScore : 7777 0 4 777777777777 555 3 1 5 5 5 5 77 333 7 5 88 99 5 3 1 11 3 444 00000 7777 11 888888888 6666666666666666666666666666666666666 6 8 7 8 5 555555555555555 44444444444444444444444444444444 111 6666666666 6 6 6 888 6 99 6 6 2 8 8 222 0 8 8 0 8 2222222222222 8 8 5555555555555 0 8 0 555555 8 99 8 11 8 33333333 2 8 0000000000000000000000000000000000000 66666666666666666 8 11 222222222 8 0 7777 6 3 0 8 5555555 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 55 3 6 666666666 3333333333 7777 99999 8 666 444 000 8 3 0 000000000000000 8 0 3 0 3 3 0 33 4 4 6 4 4 777 5 3333333 4
lowQualScore : .... . . ............ ... . . . . . . .. ... . . .. .. . . . .. . ... ..... .... .. ......... ..................................... . . . . . ............... ................................ ... .......... . . . ... . .. . . . . . ... . . . . . ............. . . ............. . . . ...... . .. . .. . ........ . . ..................................... ................. . .. ......... . . .... . . . . ....... ..................................................................................................... ... .. . . ......... .......... .... ..... . ... ... ... . . . ............... . . . . . . . .. . . . . . ... . ....... .
lowQualScore : 7777 4 2 111111111111 888 1 7 7 7 7 7 99 666 3 7 33 22 5 3 4 66 5 000 00000 0000 00 666666666 4444444444444444444444444444444444444 5 0 0 0 0 555555555555555 55555555555555555555555555555555 333 2222222222 7 7 7 333 7 22 7 7 5 0 0 222 8 0 0 8 0 4444444444444 0 0 4444444444444 8 0 8 000000 0 00 0 00 0 00000000 5 0 2222222222222222222222222222222222222 88888888888888888 0 00 222222222 0 8 4444 0 2 8 0 0000000 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888 88 3 7 777777777 2222222222 0000 00000 0 888 000 000 0 2 8 444444444444444 0 0 2 0 2 2 0 88 4 0 0 0 0 000 2 0000000 0
consensus : CTAGGTCACGC----AAGCCGTTTGACTCC------------CC---ACT-CAAACGCC-TTGG-AG-CATT-C--TAT-T-TAAAAATATTAC-A--C--CACGA-GGAGGCGCTATTAAAGAAC--GGTAACTCTATT-TAAAT----GGT--GACACC---A---AAGAAAA-C-A--------AACATT-----------------CGGATT-ACAAC-AAACCTTCATT-----TGTGA-CCA-TATCCCA------------------AA-TA---------AACACG--TTATA-T--------TTC-CG-TAA-G---T-TCCTAA--C-T-TGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT-C-A-GT--GGG-CGA-TA-T-----GAAT-TTCCTGACA-TCACGTGAAATCTG---C--ATGA-CT-TT-TT--CAA-ACATCAAT-TT----CGG-TAGN--A-----TG-GCG----AT---TT-TC-CAC-A-GGTGTTGA-TA-------AAGCTGCT-AAC--ACGTCTGAC--------C-TATTT--G-CCAACTCTCCGTAAA-TACA-CAATC-TCTAAAC---A-GGTTTCA-GCG-TAA-AA-AC--TCA-------A--TTTTCA-AATC---GA-A---T--AAAACN--ATT--G-T---T--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-A-GC---TGC-T-TT-ATCAGAAA-TCGG---ATAA--GCCT-C-GTTTTGGAGTGTAA-ATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-A-TTGACA---AACGGC-------TAG-GTGACC
Reference ( gi|2 ) : CTAGGTCACGC----AAGCCGTTTGACTTC------------CC---ACT-CAAACGCC-TTGG-AG-CATT-C--TAT-T-TAAAAATATTAC-A--C--CAAGA-GGAGGCGCTATTAAAGAAC--GGTAACTCTA-----AAT----GGT--GACAAC---A---AAGAATA-C-G--------AACATT-----------------CGGATT-ACTAC-AAACGTTCATT-----TGTGA-CTA-TATCCCA------------------AA-TA---------AACACG--TTATA-T--------TTC-CG-TAA-G---T-TCTTAA--C-T-TGATTCTTC-AT-T-T-ATTTAA-A-TAAA-TT-C-A-GT--GG--CGA-TA-T-----G-------CTGACA-TCACGTGAAATCTG---C--ATGA-C--TT-TT--CAA-ACATCAAT-TT----CGG-TAGC--A-----TG-GCG----AT---TT-TC-CGC-G-GGTGTTGT-TA-------AAGGGACT-AAC--ACGTCTGAA--------C-TATTT--T-CCAACT-TCCGTAAA-TACA-CAATT-TCTAAACTAAAAGGTTTCA-GCG-T---AC-AC--TCA-------A--TTTGCA-AATC---GA-A---T--AAAACA--ATT--G-G---T--TAT---T---TT-TATCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-A-GC---TGC-T-TT-AGCAGAAT-TCGG---ATAA--GCCT-C-GTTTTGGAGTGTAA-ATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TAT-A-TTGACA---AACGAC-------TAG-GTGACC
gi|4 : CTAGG-CACGCCAAAAAGCCGTTTGG-TCC------------CC---ACT-CAACAGCCCTTGGTAGACATT-TCTTATCT-TAAAAATAGTAC-A--C--CACGA-GGAGGCGCTATTAAAGAACCGGGTAACTCTAATCTAAAT----GGT--GACACC---A---AAGAA-A-CAA--------AACATT-----------------CGGATT-ACAGC-AAACCTTCATT-----TG-GA-CCATTAT-CCA------------------AA-TA---------AACACG--TTATA-A--------TTC-CGTTAA-G---T-TCTTAA--CTT-TTATTCTTC-AT-T-T-ATCT-A-A-TAAA-TT---A-GT---G--CGA-TA-T-----G-------C-GACA-TCACGTGAAATCTG---C--ATGA-CT-TT-TT--CAA-ACATCAATATT----C-G-TAGA--A-----TG-GCG----AT---TT-T--CAC---AGTGTTGA-TA-------AAGCTGCT-AAC--ACGTCTGAC--------C-TATTT--G-TCAACG-TCTGTAAG-TACA-C--TT-TCT---CT-AAAGGTTTCA-GCG-T---AA-AC--
gi|15 : CTAGGTCACGC----AAGCCGTTTGACTCC------------CT---ACT-
gi|11 : CCAAGTCACGC----AAGCCGTTTGACTCC------------CC---ACT-CAAAtgtcgcagagcacggctgtattgacaaacggctaggtgacctaga
gi|13 : CTAGGTCACGC----AAGCCGTTTGAATTA------------CC---ACT-tattattgtcgcagagcacggctgtattgacaaacggctaggtgacctagac
gi|19 : cCTAGATCATGC----AAGCCGTT---------------------------------GCC-TTGG-AG-CATT-C--TAT-T-TAAAAATATTAC-gtttgtcgcagagcacggctgtattgacaaacggctaggcaatctaa
gi|7 : CTAGGTCACGC----AAGCCGTTTGACTCC------------CT---ACT-
gi|12 : atccatgccatcgaaagaaaaattacatgatatctgagaaaattcgccacacaacagaccctttaatatatcaattaaatcgattttttaaatctatattaatgctaataataaaaagttatcttattcacaaattcaagtatgcacaccccacatgtattgaacctacttgtatctgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatcgtagcTAGGTCACGC----AAGCCGTTTGACTCC------------CC---ACT-CAAAC
gi|18 : TAGGTCACAC----AAGCTGTTTGACTCC------------CC---AAA-TAACCACC-TTGG-GG-CATT-C--TAT-T-TAAGAAattgtcgcagagcacggctgtattgacaaacgactaggtgacctaga
gi|17 : TAGGTCACAC----AAGCTGTTTGACTCC------------CC---AAA-TGACCACC-TTGG-AG-CATT-C--TAT-T-TAAGAAat
gi|14 : TAGGTTACGC----AAGCCGTTTGACTCC------------CC---ACT-Cat
gi|1 : AGGTCACTC----TAGCCGTTT---TTCAATCACAGCGTGCTGTGACTACAAACGTC-TAGG-AG-CATTCC--TAC-GATAAAAAT-TTAC-ACTC--CAAAACGTAGGCCCTgcagagcacggctgtattgagaaacggctacactgtaggtgacctag
gi|1 : gtttgactccccactcaaacgccttggagcattctattaaaaatattgccaccacgacggaggcgctattaaagaaccgtaactctaatttaaaggtgacagcccaaaagaaaaacaaacattcggatttacaaccaaaccttcaattgtgaaccatatcccaaaataaacacttcaatttccgtaaagttcctaacttggttctcgattctatttaaaataaatttcacgttgagcgatatgctgacatcacgtgaaatctgcatgacttttcaaacatcacattcggttagctaatgcgattttcgcacaaggtgttgataaagctgctaacacgtctgaccttatttgccaacttccgtaaattacacaatctctaaacagtttcaacgttaaactcaattttcaaatcgaattaaaaacttttgtttatttttgtctcgactgcggatgccaccgttattttagaattcaaccagatcaagctgcttttatcagaatgtcggtaGTTTGACTCC------------CC---ACT-CAAACGCC-TTGG-AG-CATT-C--TAT-T--AAAAATATTGCCA--C--CACGACGGAGGCGCTATTAAAGAAC--CGTAACTCTA-----ATTTAAAGGT--GACAGCCCAA---AAGAAAAAC-A--------AACATT-----------------CGGATTTACAACCAAACCTTCAAT-----TGTGAACCA-TATCCCA------------------AAATA---------AACACT--TCA-A-T--------TTC-CG-TAAAG---T-TCCTAA--C-T-TGGTTCTCG-AT-TCT-ATTTAA-AATAAA-TTTC-ACGTTGAG--CGA-TA-T-----G-------CTGACA-TCACGTGAAATCTG---C--ATGA-C--TT-TT--CAA-ACATCACA-TT----CGGTTAGCTAA-----T--GCG----AT---TT-TCGCACAA-GGTGTTGA-TA-------AAGCTGCT-AAC--ACGTCTGAC--------CTTATTT--G-CCAACT-TCCGTAAATTACA-CAATC-TCTAAAC-----AGTTTCA-ACGTT---AA-AC--TCA-------A--TTTTCA-AATC---GA-A---TTAAAAACT--TTT--G-T---T--TAT---T---TT-TGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------TTAGAAT----TCAACC---AGATCAA-GC---TGCTT-TT-ATCAGAATGTCGG----TAAGGGCCTAC-GTTTTGGAGTGTAA-ATTTTTATCGTAGGAATGCTCCT--AGACGTTTGTAGTCACAGCAC-GC-TGTGA-TTGAAA---AACGGC-------TAGAGTGACC
gi|10 : -CAAATGTC-TAGG-AG-CATT-C--TAC-GATAAAAAT-TTAC-ACTC--CAAAA-CGAGGCt
gi|8 : ctcgactgcggatgccaccgttatttaaatcaaccaatcagctgctttatcagaaattggataa-TAAAAATATTAC-A--CAGCGGGT-GTATGTACTGTTTAAGAAC--AGTAACTCTATTGTAAAC----GGT--GACACC---A---AAGAAAA-C-A--------AACATTAAGATTACAACAATTATTGAATT-ACAAC-AAACCCTCATT------AT-A-CAA-TATCC-A------------------AA-TA---------AACACA--TTATA-T--------TTC-TG-TAA-G---T-TCCTAA--C-T-TGGTCTTTtcacaggcacggctgtattgacaaacagctaggtgacc
gi|16 : AT-A--C--CACGA-GGAG-CAC-----AAGAAC--GATAACTCTATTTTTAAT----GGT--GACACCT--A---AAGAAAA-C-A--------AACATT-----------------Ca
gi|3 : AATCCTA-----AAT----GGTTGGAAAAT---ATCCAAGAATA-A-GGTGAAACCAACAAT-----------------CG-ATC-TCAAC-AAACCTCGATCGATCCTGTGA--TA-TATCCCAAAATAGGTAACTTAACCTAA-TAGGAATTAACAACACA--GTATA-TAAAATCTATCCTCG-TGA-GAGTTGTCTTAATAC-TATGAATTGTC-AT-T-TTATTTAAGA-TAAAATT-CTA-GT--GGGTTGAATA-T-----AAATGTTCCTGACAATCAGAT-AAATCTGGATCTAATGATC--TT-TTTCCAACATATTAAT-TTGTTTCGG-TA-C--AGATATTG-GCG----ATATCTC-TC-CAA-C-GGTCCTGTCTAGGAGCACAAGCTGCTAAAC--ACGTCTGAGAAAATACTC-TATTCGGC-CAAACTCTCCGTAAA-TACA-CAATTCTCTCAAT---ATGG-TTCA-GCG-TAAAACGAT--CCA-------T--TTTTCA-TATCAGAGA-ACACT--AAAATATGACT--GTGTGTT--TATTCGT---TT-CGTCGAGACCTTGCG-G-ATGCCACC---------G
gi|9 : TT-GCAAC-AAACCTTTATT------GTGA-CCG-TATCCCA------------------AA-TA---------TACACA--ATATC-T--------TTC-TG-TAA-G---T-TCCTAA--C-T-TGGTCATTC-AT-T-A-GTTTAA-A-GAAA-TT---A-GT--GG--CAA-TA-TTATCAGAATATTCCTGACA-TCACTTGAATTCTG---C--AGGT-C--TTATT--CAA-ACA
gi|5 : T-----TGTGA---A-TATCCC----------------------TA---------AGCATGGTTTGTAAT--------TTC-CG-GAA-GG--T-TCTTCA--T-T-TTCTTCTTCCATCT-T-ATTCAA-A-TA----T-T-A-GT--GGG-CGA-TAGT-----AAGAC---CTGACA-TCACGTGAAA--TG---C--ATGA-CTTTT-TT--CAA-ATATCAA--TT----CGG-TGAT--------TG-GCA----AT---TT-TC-CA--A-GGTGTTGA-TA-------AAGCTGCT-AACCTACGTCTGAC--------C-TA-TT--G-CCAACT-TCGGT-AA-TAGG-------TCT---------GGTGCCAGGCG-TAACAC-AC--TCAGAAAGTTA--TT--CATAATC---GATA---T--TAAACT--ATT--A-T---TCGTAT---TAACTTGCACATCGACT-TGCGTGTATAGCACCGATTCATGTGTTATTCTCTACT---AAATATCTCAACCATAA-GTC---GCTCTTGC-TCTT-ATCAGAAA-TTGAAGTATAA--GCCT-
gi|6 : aG-TAGA--A-----TGTGCGTATCAT---TTATT-CAC-AAGGTGTTGA-TACA-----AAGTTGCT-AAT--GCATCTGAC--------C-TATTT--TGCCAACTCTCGGTAAA-TACAACTATC-TCTAAA------GGTTTCG-GCG-T---AA-ACCTTCG-------AATTTTTCA-AATC---GA-A---T--ACAA-A--ATTTTG-T---T--TAC---C---TT-TGTCTCGAC--TGCGAG-ATGCCACC---------GTTATT------A---AAA----TCAA-C---A-ATC-A-GC---TGC-C-TTGATTAGAA--TCGG---ATAG--GCCT-C-GTTTTGTAGTGTAA-ATTTTTATCGT-TG-TTGCTCCTTAGGACG-TTGTCA-C-GAACATGGCTTGT-ATTTCACGTATAACGAC-------T----TGAC
gi|1 : TTGTA-AATCC--GA-A---T---------------G-T---T--TGT---T---TT-TCTTTTG-------G-G-CTGTCACC-------------TT------T---AAA----TTAG-----A-GTT-ACGG---TTC-T-TT-AATAG-----CG-----------CCT-CCGTCGTGGTG-GCAATATTTTTA--ATAGA-ATGCTCCA--AGGCGTTTGtggagtgatcct
gi|10 : gtttgactccccactCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-A-GC---TGC-T-TT-ATCAGAAA-TTGG---ATAA--GCCT-C-GTTTTGGAGTGTAA-ATTTTTATCGTAGA-ATGCTCCT--AGACATTTGTCA-CAG-GCACGGC-TGT-A-TTGACA---AACAGC-------TAG-GTGACCccaaaccttcaattgtgaaccatatcccaaaataaacacttcaatttccgtaaagttcctaacttggttctcgattctatttaaaataaatttcacgttgagcgatatgctgacatcacgtgaaatctgcatgacttttcaaacatcacattcggttagctaatgcgattttcgcacaaggtgttgataaagctgctaacacgtctgaccttatttgccaacttccgtaaattacacaatctctaaacagtttcaacgttaaactcaattttcaaatcgaattaaaaacttttgtttatttttgtctcgactgcggatgccaccgttattttagaattcaaccagatcaagctgcttttatcagaatgtcggtaagggcctacgttttggagtgtaaatttttatcgtaggaatgctcctagacgtttgtagtcacagcacgctgtgattgaaaaacggctagagtgacct
gi|20 : ACGTTTGTCG-AAGAGCACGGC-TGT-G-TTAACA---AACGTG-------TAG-GTGACC
gi|13 : GTTTGTCG-CAGAGCACGGC-TGT-A-TTGACA---AACGGC-------TAG-GCAATCta
gi|12 : cctaggtcacgcaagccgtttgaattaccactTTGTCG-CAGAGCACGGC-TGT-A-TTGACA---AACGAC-------TAG-GTGACCtaa
gi|15 : taggtcacgcaagccgtttgactccccactcaaacaTTGTCG-CAGAGCACGGC-TGT-A-TTGACA---AACGGC-------TAG-GTGACCtaga
gi|11 : ctaggtcacgcaagccgtttgactccctacTTGTCG-CAGAGCACGGC-TGT-A-TTGACA---AACGGC-------TAG-GTGACCtaga
gi|14 : ccaagtcacgcaagccgtttgactccccactcaaatattaTCG-CAGAGCACGGC-TGT-A-TTGAGA---AACGGCTACACTGTAG-GTGACCtagac
gi|22 : taggttacgcaagccgtttgactccccac-TGT-A-TTGACA---AACGTC-------TAG-GTGACCtag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TGTATCATAGCACATTTAGATTGAAAACAACATCTAGATGGTCACCT
Alignments
lowQualScore : 11 3333 11 11 55555555555555555 111 22222 77777777777777 111 222222 22222222222 1111 111 1 3333333 22222222 11 1 22222222 222222 2222 111 222222222222222 11 2222222 1 222222222 3333333333 1111 222 111 111 11 1111 11 1 11 1111111
lowQualScore : 7777 3 6 6 6 99 6 6 8 8 8 0 1 11 1111 1 3 11 8 11 8 66666666666666666 8 6 6 1 6 6 99 6 6 6 6 6 6 6 888 222 6 77777 33 99 6 88888888888888 6 111 99 6 6 99 111111 0 22222222222 6 4444 111 6 77 2 3 6 0000000 6 99 44444444 6 55 6 9 1 88 77777 88888888 6 111111 8888 8 8 444 8 222222222222222 55 8 11 2222222 8 99 6 3 6 666666666 3333333333 7777 222 88 444 000 8 77 4444 11 8 3 0 33 4 3 3 3333333 4
lowQualScore : .... . . . . .. . . . . . . . .. .... . . .. . .. . ................. . . . . . . .. . . . . . . . ... ... . ..... .. .. . .............. . ... .. . . .. ...... . ........... . .... ... . .. . . . ....... . .. ........ . .. . . . .. ..... ........ . ...... .... . . ... . ............... .. . .. ....... . .. . . . ......... .......... .... ... .. ... ... . .. .... .. . . . .. . . . ....... .
lowQualScore : 7777 0 7 7 7 22 7 7 0 0 0 8 0 00 6666 0 8 00 0 00 0 00000000000000000 0 0 7 0 7 7 22 7 7 7 7 7 7 7 777 555 7 77777 55 22 7 22222222222222 7 777 22 7 7 22 222222 8 33333333333 7 2222 777 7 77 5 3 7 8888888 7 22 22222222 7 00 7 2 0 33 55555 22222222 7 333333 0000 0 0 000 0 222222222222222 44 0 00 0000000 0 22 7 3 7 777777777 2222222222 0000 000 88 000 000 0 00 8888 00 0 2 0 88 0 6 6 0000000 0
consensus : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATT-TAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCAT-ATCCCAAA-TAAACACG--TTATA-TTTCCGT-AA-G-TTCCTAACTTG-GTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-A-GA--A---TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAA-TACA-CNA-TCTCTAAAC----AGGTTTCAG-CGTAAAAC-ACTCAAA---TT-TTCA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--T-GCG-G-ATGCCACCG---------TTATT------T---AAAT----CAACCA---ATC-AGCT---GC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
Reference ( family-586 ) : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTA-TT-TAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCAT-ATCCCAAA-TAAACACG--TTATA-TTTCCGT-AA-G-TTCCTAACTTG-GTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-AT-TTCCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-A-GN--A---TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACTCTCCGTAAA-TACA-CAA-TCTCTAAAC----AGGTTTCAG-CGTAAAA--ACTCAA----TT-TTCA-AATC---GA-A---T--A-AA-----ACNAT-TGTT--TAT---T---TT-CGTCTCGAC--T-GCG-G-ATGCCACCG---------TTATT------T---AAAT----CAACCA---ATC-AGCT---GC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
gi|1 : GTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-T-AAAAATATTGCCACCACGACG-G-AGGCGCTATTAAAGAAC--CGTAACTCTAATT-TAAA-GGTGACAGCCC-AAAAGAAAAACAAACATTCGGATTTACA-----------------ACCAAACCTTCAATTGTGAACCAT-ATCCCAAAATAAACACT--TCA-A-TTTCCGT-AAAG-TTCCTAACTTG-GTTCTCG-AT-TCT-ATTTAA-AATAAA-TTTCAC-GTTGAGC--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAC----A-TTCGGTTA-GCTAA---TG--CG----AT---TT-TCGCACAAGGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCTTATTT-GCC-AACT-TCCGTAAATTACA-CAA-TCTCTAAAC----A-GTTTCAA-CGT-TAA--ACTCAA----TT-TTCA-AATC---GA-A---TTAA-AA-----ACTTT-TGTT--TAT---T---TT-TGTCTCGAC--T-GCG-G-ATGCCACCG---------TTATT------TTAGAATT----CAACCAG--ATCAAGCT---GCTT-TT-ATCAGAATGTCGG----TAAGGGCCTACGTTTTGGAGTGTAAATTTTTATCGTAGGAATGCTCCT--AGACGTTTGTAGTCACAGCAC-GC-TGTGATTGAAAAACGGC-------TAGAGTGACC
gi|10 : CTCGAC--T-GCG-G-ATGCCACCG---------TTATT------T---AAAT----CAACCA---ATC-AGCT---GC-T-TT-ATCAGAA-ATTGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGA-ATGCTCCT--AGACATTTGTCA-CAG-GCACGGC-TGT-ATTGACAAACAGC-------TAG-GTGACCt
gi|11 : CCAAGTCACGC----AAGCCGTTTGACTCCCCACTCAAA
gi|11 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtattattgtcgcagagcacggctgtattgacaaacggctaggtgacctagac
gi|12 : ccaagtcacgcaagccgtttgactccccactcaaatattaTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACtagac
gi|12 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGAC-------TAG-GTGACCattgtcgcagagcacggctgtattgacaaacgactaggtgacctaga
gi|13 : taggtcacgcaagccgtttgactccccactcaaacaCTAGGTCACGC----AAGCCGTTTGAATTACCACTtaga
gi|13 : cGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GCAATCgtttgtcgcagagcacggctgtattgacaaacggctaggcaatctaa
gi|14 : cctaggtcacgcaagccgtttgaattaccactTAGGTTACGC----AAGCCGTTTGACTCCCCACTCtaa
gi|14 : TCG-CAGAGCACGGC-TGT-ATTGAGAAACGGCTACACTGTAG-GTGACCgcagagcacggctgtattgagaaacggctacactgtaggtgacctag
gi|15 : taggttacgcaagccgtttgactccccacCTAGGTCACGC----AAGCCGTTTGACTCCCTACTtag
gi|15 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtgtcgcagagcacggctgtattgacaaacggctaggtgacctaga
gi|16 : ctaggtcacgcaagccgtttgactccctacAT-ACCACGA-G-G-AG-CAC-----AAGAAC--GATAACTCTATTT-TTAATGGTGACA--CCTAAAG--AAAACAAACATTCtaga
gi|17 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATGACCACC-TTGG-AG-CATTC--TAT-TTAAGAA
gi|18 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATAACCACC-TTGG-GG-CATTC--TAT-TTAAGAAat
gi|19 : CTAGATCATGC----AAGCCGTT-----------------GCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-at
gi|2 : CTAGGTCACGC----AAGCCGTTTGACTTCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCAAGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTA------AATGGTGACA--AC-AAAG--AATACGAACATTCGGATT-ACT-----------------AC-AAACGTTCATTTGTGA-CTAT-ATCCCAAA-TAAACACG--TTATA-TTTCCGT-AA-G-TTCTTAACTTG-ATTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGG-C--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-C-TTTT-CAAAC--ATCAA----T-TTCGGT-A-GC--A---TG-GCG----AT---TT-TC-CGCG-GGTGTTG-TTA-------AAGGGACT-AAC--ACGTCTGA--------ACT-ATTT-TCC-AACT-TCCGTAAA-TACA-CAA-TTTCTAAACTAAAAGGTTTCAG-CGT--AC--ACTCAA----TT-TGCA-AATC---GA-A---T--A-AA-----ACAAT-TGGT--TAT---T---TT-TATCTCGAC--T-GCG-G-ATGCCACCG---------TTATT------T---AAAT----CAACCA---ATC-AGCT---GC-T-TT-AGCAGAA-TTCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TAT-ATTGACAAACGAC-------TAG-GTGACC
gi|20 : ACGTTTGTCG-AAGAGCACGGC-TGT-GTTAACAAACGTG-------TAG-GTGACC
gi|22 : -TGT-ATTGACAAACGTC-------TAG-GTGACCta
gi|3 : TC-AT-T-TTATTTAAGA-TAAAATT---CTAGTGGGTTGAATA-T-----AA-ATGTTCCTGACAATCAGAT-AAATCTGGATCTAATGATCTTTTT-CCAACATATTAATTTGT-TTCGGT-ACAG--ATATTG-GCG----ATATCTC-TC-CAAC-GGTCCTGTCTAGGAGCACAAGCTGCTAAAC--ACGTCTGAGAAAATACTCT-ATTCGGCCAAACTCTCCGTAAA-TACA-CAATTCTCTCAAT----ATGGTTCAG-CGTAAAACGATCCAT----TT-TTCA-TATCAGAGA-ACACT--A-AAATATGACTGTGTGTT--TATTCGT---TT-CGTCGAGACCTT-GCG-G-ATGCCACCG---------taga
gi|4 : aatcctaaatggttggaaaatatccaagaataaggtgaaaccaacaatcgatctcaacaaacctcgatcgatcctgtgatatatcccaaaataggtaacttaacctaataggaattaacaacacagtatataaaatctatcctcgtgagagttgtcttaatactatgaattgCTAGG-CACGCCAAAAAGCCGTTTGG-TCCCCACTCAACAGCCCTTGGTAGACATTTCTTATCTTAAAAATAGTAC-ACCACGA-G-G-AGGCGCTATTAAAGAACCGGGTAACTCTAATC-TAAATGGTGACA--CC-AAAG--AAACAAAACATTCGGATT-ACA-----------------GC-AAACCTTCATTTG-GA-CCATTATCC-AAA-TAAACACG--TTATA-ATTCCGTTAA-G-TTCTTAACTTTTATTCTTC-AT-T-T-ATCTAA---TAAA-TT-----AGTG--C--GATA-T-----G---------CGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----TATTC-GT-A-GA--A---TG-GCG----AT---TT-T--CACA--GTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GTC-AAC-GTCTGTAAG-TACA-CTT-TCTCTAA------AGGTTTCAG-CGTAAA
gi|5 : TTGTGA---AT-ATCCC----TAAGCATGGTTTGTAATTTCCGG-AA-GGTTCTTCATTTT-CTTCTTCCATCT-T-ATTCAA-A-TA----T---T-AGTGGGC--GATAGT-----AAGA----CCTGACA-TCACGTGAAAT--G---C--ATGA-CTTTTTTCAAAT--ATCAA----T-T-CGGT---GA--T---TG-GCA----AT---TT-TC-CA-A-GGTGTTG-ATA-------AAGCTGCT-AACCTACGTCTGA--------CCT-ATT--GCC-AACT-TCGGTAA--TA----GG-TCT-----------GGTGCCAGGCGTAACAC-ACTCAGAAAGTTATTCATAATC---GATA---T--T-AA-----ACTAT-TATTCGTAT---TAACTTGCACATCGAC--TTGCGTGTATAGCACCGATTCATGTGTTATTCTCTACT---AAATATCTCAACCATAAGTC--GCTCTTGC-TCTT-ATCAGAA-ATTGAAGTATAA--GCCT-c
gi|6 : aGT-A-GA--A---TGTGCGTATCAT---TTATT-CACAAGGTGTTG-ATACA-----AAGTTGCT-AAT--GCATCTGA--------CCT-ATTTTGCC-AACTCTCGGTAAA-TACAACTA-TCTCTAAA------GGTTTCGG-CGTAAAC--CTTCGAAT--TT-TTCA-AATC---GA-A---T--ACAA-----AATTT-TGTT--TAC---C---TT-TGTCTCGAC--T-GCGAG-ATGCCACCG---------TTATT------A---AAAT----CAAC-A---ATC-AGCT---GC-C-TTGATTAGAA--TCGG---ATAG--GCCT-CGTTTTGTAGTGTAAATTTTTATCGT-TG-TTGCTCCTTAGGACG-TTGTCA-C-GAACATGGCTTGT-ATT
gi|7 : CTAGGTCACGC----AAGCCGTTTGACTCCCTACTtcacgtataacgacttgactggagtgatcct
gi|8 : atccatgccatcgaaagaaaaattacatgatatctgagaaaattcgccacacaacagaccctttaatatatcaattaaatcgattttttaaatctatattaatgctaataataaaaagttatcttattcacaaattcaagtatgcacaccccacatgtattgaacctacttgtatctgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatcgtagcTAAAAATATTAC-ACAGCGG-GTGTATGTACTGTTTAAGAAC--AGTAACTCTA-TTGTAAACGGTGACA--CC-AAAG--AAAACAAACATTAAGATT-ACAACAATTATTGAATTACAAC-AAACCCTCA-TTAT-A-CAAT-AT-CCAAA-TAAACACA--TTATA-TTTCTGT-AA-G-TTCCTAACTTG-GTCTTT
gi|9 : TT-GCA-----------------AC-AAACCTTTATT-GTGA-CCGT-ATCCCAAA-TATACACA--ATATC-TTTCTGT-AA-G-TTCCTAACTTG-GTCATTC-AT-T-A-GTTTAA-A-GAAA-TT-----AGT-GGC--AATA-TTATCAGA-ATATTCCTGACA-TCACTTGAATTCTG---C--AGGT-CTTATT-CAAAC--Aa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TGTATCATAGCACATTTAGATTGAAAACAACATCTAGATGGTCACCT
Alignments
lowQualScore : 11 11 11 55555555555555555 22222 66666666666666 111 11 222222 11111111111 1111 111 1 3333333 22222222 1 1 222222 11 2222 111 222222222222222 11 2222222 11 1 222222222 3333333333 1111 111 111 111 11 1111 11 1 11 1111111
lowQualScore : 7777 3 6 6 6 99 6 6 8 8 8 0 1 11 555 1 3 11 8 11 8 66666666666666666 8 6 6 1 6 6 6 99 6 6 6 6 6 6 6 888 6 6 6 77777 6 99 6 88888888888888 6 111 99 6 44 99 111111 0 66666666666 6 4444 111 6 77 2 3 6 0000000 6 99 44444444 6 3 6 3 1 6 6 1 6 666666 6 3 66 2222 9 8 8 8 444 8 222222222222222 1 8 11 2222222 8 55 3 6 666666666 3333333333 7777 444 8 88 444 000 8 77 4444 11 8 3 0 33 4 3 3 3333333 4
lowQualScore : .... . . . . .. . . . . . . . .. ... . . .. . .. . ................. . . . . . . . .. . . . . . . . ... . . . ..... . .. . .............. . ... .. . .. .. ...... . ........... . .... ... . .. . . . ....... . .. ........ . . . . . . . . . ...... . . .. .... . . . . ... . ............... . . .. ....... . .. . . ......... .......... .... ... . .. ... ... . .. .... .. . . . .. . . . ....... .
lowQualScore : 7777 0 7 7 7 22 7 7 0 0 0 8 0 00 888 0 8 00 0 00 0 00000000000000000 0 0 7 0 7 7 7 22 7 7 7 7 7 7 7 777 7 7 7 77777 7 22 7 00000000000000 7 777 22 7 00 22 222222 8 22222222222 7 2222 777 7 77 5 3 7 8888888 7 22 22222222 7 3 7 3 0 7 7 0 7 777777 7 5 88 6666 0 0 0 0 000 0 222222222222222 0 0 00 0000000 0 88 3 7 777777777 2222222222 0000 000 0 88 000 000 0 00 8888 00 0 2 0 88 0 6 6 0000000 0
consensus : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACGCTC---GAATT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
Reference ( family-586 ) : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACACTC---AAATT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
gi|1 : GTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-T-AAAAATATTGCCACCACGACG-G-AGGCGCTATTAAAGAAC--CGTAACTCTAATTTAAA-GGTGACAGCCC-AAAAGAAAAACAAACATTCGGATTTACA-----------------ACCAAACCTTCAATTGTGAACCA-TATCCCAAAATAAACACT--TCA-A-TTTCCG-TAAAG-TTCCTAAC-TTGGTTCTCG-AT-TCT-ATTTAA-AATAAA-TTTCAC-GTTGAGC--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAC----A-TTCGGTTAGCTAA----TG--CG----AT---TT-TCGCACAAGGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCTTATTT-GCC-AACT-TCCGTAAATTACA-CAA-TCTCTAAAC----AG-TTTCA-ACGTTAAAC--TC---AA-TT-TT-CA-AATC---GA-A---TTAA-AA-----ACTTT-TGTT--TAT---T---TT-TGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------TTAGAAT----TCAACC---AGATCAAGC---TGCTT-TT-ATCAGAATGTCGG----TAAGGGCCTACGTTTTGGAGTGTAAATTTTTATCGTAGGAATGCTCCT--AGACGTTTGTAGTCACAGCAC-GC-TGTGATTGAAAAACGGC-------TAGAGTGACC
gi|10 : CTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATTGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGA-ATGCTCCT--AGACATTTGTCA-CAG-GCACGGC-TGT-ATTGACAAACAGC-------TAG-GTGACCt
gi|11 : CCAAGTCACGC----AAGCCGTTTGACTCCCCACTCAAA
gi|11 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtattattgtcgcagagcacggctgtattgacaaacggctaggtgacctagac
gi|12 : ccaagtcacgcaagccgtttgactccccactcaaatattaTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACtagac
gi|12 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGAC-------TAG-GTGACCattgtcgcagagcacggctgtattgacaaacgactaggtgacctaga
gi|13 : taggtcacgcaagccgtttgactccccactcaaacaCTAGGTCACGC----AAGCCGTTTGAATTACCACTtaga
gi|13 : cGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GCAATCgtttgtcgcagagcacggctgtattgacaaacggctaggcaatctaa
gi|14 : cctaggtcacgcaagccgtttgaattaccactTAGGTTACGC----AAGCCGTTTGACTCCCCACTCtaa
gi|14 : TCG-CAGAGCACGGC-TGT-ATTGAGAAACGGCTACACTGTAG-GTGACCgcagagcacggctgtattgagaaacggctacactgtaggtgacctag
gi|15 : taggttacgcaagccgtttgactccccacCTAGGTCACGC----AAGCCGTTTGACTCCCTACTtag
gi|15 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtgtcgcagagcacggctgtattgacaaacggctaggtgacctaga
gi|16 : ctaggtcacgcaagccgtttgactccctacAT-ACCACGA-G-G-AG-CAC-----AAGAAC--GATAACTCTATTTTTAATGGTGACA--CCTAAAG--AAAACAAACATTCtaga
gi|17 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATGACCACC-TTGG-AG-CATTC--TAT-TTAAGAA
gi|18 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATAACCACC-TTGG-GG-CATTC--TAT-TTAAGAAat
gi|19 : CTAGATCATGC----AAGCCGTT-----------------GCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-at
gi|2 : CTAGGTCACGC----AAGCCGTTTGACTTCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCAAGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAA-----ATGGTGACA--AC-AAAG--AATACGAACATTCGGATT-ACT-----------------AC-AAACGTTCATTTGTGA-CTA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCTTAAC-TTGATTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGG-C--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAA----T-TTCGGT-AG--CA----TG-GCG----AT---TT-TC-CGCG-GGTGTTG-TTA-------AAGGGACT-AAC--ACGTCTGA--------ACT-ATTT-TCC-AACT-TCCGTAAAT-ACA-CAA-TTTCTAAACTAAAAGGTTTCA-GCGT---ACACTC----AATT-TG-CA-AATC---GA-A---T--A-AA-----ACAAT-TGGT--TAT---T---TT-TATCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-AGCAGAA-TTCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TAT-ATTGACAAACGAC-------TAG-GTGACC
gi|20 : ACGTTTGTCG-AAGAGCACGGC-TGT-GTTAACAAACGTG-------TAG-GTGACC
gi|22 : -TGT-ATTGACAAACGTC-------TAG-GTGACCta
gi|3 : TC-AT-T-TTATTTAAGA-TAAAATT---CTAGTGGGTTGAATA-T-----AA-ATGTTCCTGACAATCAGAT-AAATCTGGATCTAATGATCTTTTT-CCAACATATTAATTTGT-TTCGGT-AC--AGATATTG-GCG----ATATCTC-TC-CAAC-GGTCCTGTCTAGGAGCACAAGCTGCTAAAC--ACGTCTGAGAAAATACTCT-ATTCGGCCAAACTCTCCGTAAAT-ACA-CAATTCTCTCAAT----ATGGTTCA-GCGTAAAACGATC---CATTT-TT-CA-TATCAGAGA-ACACT--A-AAATATGACTGTGTGTT--TATTCGT---TT-CGTCGAGACCTTGCG-G-ATGCCACC---------Gtaga
gi|4 : aatcctaaatggttggaaaatatccaagaataaggtgaaaccaacaatcgatctcaacaaacctcgatcgatcctgtgatatatcccaaaataggtaacttaacctaataggaattaacaacacagtatataaaatctatcctcgtgagagttgtcttaatactatgaattgCTAGG-CACGCCAAAAAGCCGTTTGG-TCCCCACTCAACAGCCCTTGGTAGACATTTCTTATCTTAAAAATAGTAC-ACCACGA-G-G-AGGCGCTATTAAAGAACCGGGTAACTCTAATCTAAATGGTGACA--CC-AAAG--AAACAAAACATTCGGATT-ACA-----------------GC-AAACCTTCATTTG-GA-CCATTAT-CCAAA-TAAACACG--TTATA-ATTCCGTTAA-G-TTCTTAACTTTTATTCTTC-AT-T-T-ATCT-A-A-TAAA-TT-----AGT--GC--GATA-T-----G---------CGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----TATTC-GT-AG--AA----TG-GCG----AT---TT-T--CACA--GTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GTC-AACG-TCTGTAAGT-ACA-CTT-TCTCTAA------AGGTTTCA-GCGTAAA
gi|5 : TTGTGA---A-TATCCC----TAAGCATGGTTTGTAATTTCCG-GAA-GGTTCTTCAT-TTTCTTCTTCCATCT-T-ATTCAA-A-TA----T---T-AGTGGGC--GATAGT-----AAGA----CCTGACA-TCACGTGAAAT--G---C--ATGA-CTTTTTTCAAAT--ATCAA----T-T-CGGT--G--AT----TG-GCA----AT---TT-TC-CA-A-GGTGTTG-ATA-------AAGCTGCT-AACCTACGTCTGA--------CCT-A-TT-GCC-AACT-TCGGT-AAT-A----GG-TCT-----------GGTGCCAGGCGTAACACACTCAGAAAGTTATT-CATAATC---GATA---T--T-AA-----ACTAT-TATTCGTAT---TAACTTGCACATCGACT-TGCGTGTATAGCACCGATTCATGTGTTATTCTCTACT---AAATATCTCAACCATAA-GTC--GCTCTTGC-TCTT-ATCAGAA-ATTGAAGTATAA--GCCT-c
gi|6 : aGT-AG--AA----TGTGCGTATCAT---TTATT-CACAAGGTGTTG-ATACA-----AAGTTGCT-AAT--GCATCTGA--------CCT-ATTTTGCC-AACTCTCGGTAAAT-ACAACTA-TCTCTAAA------GGTTTCG-GCGTAAACC-TTC---GAATT-TTTCA-AATC---GA-A---T--ACAA-----AATTT-TGTT--TAC---C---TT-TGTCTCGAC--TGCGAG-ATGCCACC---------GTTATT------A---AAA----TCAAC----A-ATC-AGC---TGC-C-TTGATTAGAA--TCGG---ATAG--GCCT-CGTTTTGTAGTGTAAATTTTTATCGT-TG-TTGCTCCTTAGGACG-TTGTCA-C-GAACATGGCTTGT-ATT
gi|7 : CTAGGTCACGC----AAGCCGTTTGACTCCCTACTtcacgtataacgacttgactggagtgatcct
gi|8 : atccatgccatcgaaagaaaaattacatgatatctgagaaaattcgccacacaacagaccctttaatatatcaattaaatcgattttttaaatctatattaatgctaataataaaaagttatcttattcacaaattcaagtatgcacaccccacatgtattgaacctacttgtatctgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatcgtagcTAAAAATATTAC-ACAGCGG-GTGTATGTACTGTTTAAGAAC--AGTAACTCTATTGTAAACGGTGACA--CC-AAAG--AAAACAAACATTAAGATT-ACAACAATTATTGAATTACAAC-AAACCCTCA-TTAT-A-CAA-TAT-CCAAA-TAAACACA--TTATA-TTTCTG-TAA-G-TTCCTAAC-TTGGTCTTT
gi|9 : TT-GCA-----------------AC-AAACCTTTATT-GTGA-CCG-TATCCCAAA-TATACACA--ATATC-TTTCTG-TAA-G-TTCCTAAC-TTGGTCATTC-AT-T-A-GTTTAA-A-GAAA-TT-----AGT-GGC--AATA-TTATCAGA-ATATTCCTGACA-TCACTTGAATTCTG---C--AGGT-CTTATT-CAAAC--Aa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TGTATCATAGCACATTTAGATTGAAAACAACATCTAGATGGTCACCT
Alignments
lowQualScore : 11 11 11 55555555555555555 22222 66666666666666 111 11 222222 11111111111 1111 111 1 3333333 22222222 1 1 222222 222222 11 111 222222222222222 11 2222222 11 1 222222222 3333333333 1111 111 111 111 11 1111 11 1 11 1111111
lowQualScore : 7777 3 6 6 6 99 6 6 8 8 8 0 1 11 555 1 3 11 8 11 8 66666666666666666 8 6 6 1 6 6 6 99 6 6 6 6 6 6 6 888 6 6 6 77777 6 99 6 88888888888888 6 111 99 6 44 99 111111 0 66666666666 6 4444 111 6 77 2 3 6 0000000 6 99 44444444 6 3 6 3 1 6 6 1 6 666666 6 3 333333 11 8 8 8 444 8 222222222222222 1 8 11 2222222 8 55 3 6 666666666 3333333333 7777 444 8 88 444 000 8 77 4444 11 8 3 0 33 4 3 3 3333333 4
lowQualScore : .... . . . . .. . . . . . . . .. ... . . .. . .. . ................. . . . . . . . .. . . . . . . . ... . . . ..... . .. . .............. . ... .. . .. .. ...... . ........... . .... ... . .. . . . ....... . .. ........ . . . . . . . . . ...... . . ...... .. . . . ... . ............... . . .. ....... . .. . . ......... .......... .... ... . .. ... ... . .. .... .. . . . .. . . . ....... .
lowQualScore : 7777 0 7 7 7 22 7 7 0 0 0 8 0 00 888 0 8 00 0 00 0 00000000000000000 0 0 7 0 7 7 7 22 7 7 7 7 7 7 7 777 7 7 7 77777 7 22 7 00000000000000 7 777 22 7 00 22 222222 8 22222222222 7 2222 777 7 77 5 3 7 8888888 7 22 22222222 7 3 7 3 0 7 7 0 7 777777 7 5 666666 00 0 0 0 000 0 222222222222222 0 0 00 0000000 0 88 3 7 777777777 2222222222 0000 000 0 88 000 000 0 00 8888 00 0 2 0 88 0 6 6 0000000 0
consensus : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACGCTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
Reference ( family-586 ) : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACGCTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
gi|1 : GTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-T-AAAAATATTGCCACCACGACG-G-AGGCGCTATTAAAGAAC--CGTAACTCTAATTTAAA-GGTGACAGCCC-AAAAGAAAAACAAACATTCGGATTTACA-----------------ACCAAACCTTCAATTGTGAACCA-TATCCCAAAATAAACACT--TCA-A-TTTCCG-TAAAG-TTCCTAAC-TTGGTTCTCG-AT-TCT-ATTTAA-AATAAA-TTTCAC-GTTGAGC--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAC----A-TTCGGTTAGCTAA----TG--CG----AT---TT-TCGCACAAGGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCTTATTT-GCC-AACT-TCCGTAAATTACA-CAA-TCTCTAAAC----AG-TTTCA-ACGTTAAAC--TC--AA--TT-TT-CA-AATC---GA-A---TTAA-AA-----ACTTT-TGTT--TAT---T---TT-TGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------TTAGAAT----TCAACC---AGATCAAGC---TGCTT-TT-ATCAGAATGTCGG----TAAGGGCCTACGTTTTGGAGTGTAAATTTTTATCGTAGGAATGCTCCT--AGACGTTTGTAGTCACAGCAC-GC-TGTGATTGAAAAACGGC-------TAGAGTGACC
gi|10 : CTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATTGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGA-ATGCTCCT--AGACATTTGTCA-CAG-GCACGGC-TGT-ATTGACAAACAGC-------TAG-GTGACCt
gi|11 : CCAAGTCACGC----AAGCCGTTTGACTCCCCACTCAAA
gi|11 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtattattgtcgcagagcacggctgtattgacaaacggctaggtgacctagac
gi|12 : ccaagtcacgcaagccgtttgactccccactcaaatattaTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACtagac
gi|12 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGAC-------TAG-GTGACCattgtcgcagagcacggctgtattgacaaacgactaggtgacctaga
gi|13 : taggtcacgcaagccgtttgactccccactcaaacaCTAGGTCACGC----AAGCCGTTTGAATTACCACTtaga
gi|13 : cGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GCAATCgtttgtcgcagagcacggctgtattgacaaacggctaggcaatctaa
gi|14 : cctaggtcacgcaagccgtttgaattaccactTAGGTTACGC----AAGCCGTTTGACTCCCCACTCtaa
gi|14 : TCG-CAGAGCACGGC-TGT-ATTGAGAAACGGCTACACTGTAG-GTGACCgcagagcacggctgtattgagaaacggctacactgtaggtgacctag
gi|15 : taggttacgcaagccgtttgactccccacCTAGGTCACGC----AAGCCGTTTGACTCCCTACTtag
gi|15 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtgtcgcagagcacggctgtattgacaaacggctaggtgacctaga
gi|16 : ctaggtcacgcaagccgtttgactccctacAT-ACCACGA-G-G-AG-CAC-----AAGAAC--GATAACTCTATTTTTAATGGTGACA--CCTAAAG--AAAACAAACATTCtaga
gi|17 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATGACCACC-TTGG-AG-CATTC--TAT-TTAAGAA
gi|18 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATAACCACC-TTGG-GG-CATTC--TAT-TTAAGAAat
gi|19 : CTAGATCATGC----AAGCCGTT-----------------GCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-at
gi|2 : CTAGGTCACGC----AAGCCGTTTGACTTCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCAAGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAA-----ATGGTGACA--AC-AAAG--AATACGAACATTCGGATT-ACT-----------------AC-AAACGTTCATTTGTGA-CTA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCTTAAC-TTGATTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGG-C--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAA----T-TTCGGT-AG--CA----TG-GCG----AT---TT-TC-CGCG-GGTGTTG-TTA-------AAGGGACT-AAC--ACGTCTGA--------ACT-ATTT-TCC-AACT-TCCGTAAAT-ACA-CAA-TTTCTAAACTAAAAGGTTTCA-GCGT---ACACTC--AA--TT-TG-CA-AATC---GA-A---T--A-AA-----ACAAT-TGGT--TAT---T---TT-TATCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-AGCAGAA-TTCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TAT-ATTGACAAACGAC-------TAG-GTGACC
gi|20 : ACGTTTGTCG-AAGAGCACGGC-TGT-GTTAACAAACGTG-------TAG-GTGACC
gi|22 : -TGT-ATTGACAAACGTC-------TAG-GTGACCta
gi|3 : TC-AT-T-TTATTTAAGA-TAAAATT---CTAGTGGGTTGAATA-T-----AA-ATGTTCCTGACAATCAGAT-AAATCTGGATCTAATGATCTTTTT-CCAACATATTAATTTGT-TTCGGT-AC--AGATATTG-GCG----ATATCTC-TC-CAAC-GGTCCTGTCTAGGAGCACAAGCTGCTAAAC--ACGTCTGAGAAAATACTCT-ATTCGGCCAAACTCTCCGTAAAT-ACA-CAATTCTCTCAAT----ATGGTTCA-GCGTAAAACGATC-CAT--TT-TT-CA-TATCAGAGA-ACACT--A-AAATATGACTGTGTGTT--TATTCGT---TT-CGTCGAGACCTTGCG-G-ATGCCACC---------Gtaga
gi|4 : aatcctaaatggttggaaaatatccaagaataaggtgaaaccaacaatcgatctcaacaaacctcgatcgatcctgtgatatatcccaaaataggtaacttaacctaataggaattaacaacacagtatataaaatctatcctcgtgagagttgtcttaatactatgaattgCTAGG-CACGCCAAAAAGCCGTTTGG-TCCCCACTCAACAGCCCTTGGTAGACATTTCTTATCTTAAAAATAGTAC-ACCACGA-G-G-AGGCGCTATTAAAGAACCGGGTAACTCTAATCTAAATGGTGACA--CC-AAAG--AAACAAAACATTCGGATT-ACA-----------------GC-AAACCTTCATTTG-GA-CCATTAT-CCAAA-TAAACACG--TTATA-ATTCCGTTAA-G-TTCTTAACTTTTATTCTTC-AT-T-T-ATCT-A-A-TAAA-TT-----AGT--GC--GATA-T-----G---------CGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----TATTC-GT-AG--AA----TG-GCG----AT---TT-T--CACA--GTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GTC-AACG-TCTGTAAGT-ACA-CTT-TCTCTAA------AGGTTTCA-GCGTAAA
gi|5 : TTGTGA---A-TATCCC----TAAGCATGGTTTGTAATTTCCG-GAA-GGTTCTTCAT-TTTCTTCTTCCATCT-T-ATTCAA-A-TA----T---T-AGTGGGC--GATAGT-----AAGA----CCTGACA-TCACGTGAAAT--G---C--ATGA-CTTTTTTCAAAT--ATCAA----T-T-CGGT--G--AT----TG-GCA----AT---TT-TC-CA-A-GGTGTTG-ATA-------AAGCTGCT-AACCTACGTCTGA--------CCT-A-TT-GCC-AACT-TCGGT-AAT-A----GG-TCT-----------GGTGCCAGGCGTAACACACTCAGAAAGTTATT-CATAATC---GATA---T--T-AA-----ACTAT-TATTCGTAT---TAACTTGCACATCGACT-TGCGTGTATAGCACCGATTCATGTGTTATTCTCTACT---AAATATCTCAACCATAA-GTC--GCTCTTGC-TCTT-ATCAGAA-ATTGAAGTATAA--GCCT-c
gi|6 : aGT-AG--AA----TGTGCGTATCAT---TTATT-CACAAGGTGTTG-ATACA-----AAGTTGCT-AAT--GCATCTGA--------CCT-ATTTTGCC-AACTCTCGGTAAAT-ACAACTA-TCTCTAAA------GGTTTCG-GCGTAAACC-TTC-GAA--TT-TTTCA-AATC---GA-A---T--ACAA-----AATTT-TGTT--TAC---C---TT-TGTCTCGAC--TGCGAG-ATGCCACC---------GTTATT------A---AAA----TCAAC----A-ATC-AGC---TGC-C-TTGATTAGAA--TCGG---ATAG--GCCT-CGTTTTGTAGTGTAAATTTTTATCGT-TG-TTGCTCCTTAGGACG-TTGTCA-C-GAACATGGCTTGT-ATT
gi|7 : CTAGGTCACGC----AAGCCGTTTGACTCCCTACTtcacgtataacgacttgactggagtgatcct
gi|8 : atccatgccatcgaaagaaaaattacatgatatctgagaaaattcgccacacaacagaccctttaatatatcaattaaatcgattttttaaatctatattaatgctaataataaaaagttatcttattcacaaattcaagtatgcacaccccacatgtattgaacctacttgtatctgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatcgtagcTAAAAATATTAC-ACAGCGG-GTGTATGTACTGTTTAAGAAC--AGTAACTCTATTGTAAACGGTGACA--CC-AAAG--AAAACAAACATTAAGATT-ACAACAATTATTGAATTACAAC-AAACCCTCA-TTAT-A-CAA-TAT-CCAAA-TAAACACA--TTATA-TTTCTG-TAA-G-TTCCTAAC-TTGGTCTTT
gi|9 : TT-GCA-----------------AC-AAACCTTTATT-GTGA-CCG-TATCCCAAA-TATACACA--ATATC-TTTCTG-TAA-G-TTCCTAAC-TTGGTCATTC-AT-T-A-GTTTAA-A-GAAA-TT-----AGT-GGC--AATA-TTATCAGA-ATATTCCTGACA-TCACTTGAATTCTG---C--AGGT-CTTATT-CAAAC--Aa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TGTATCATAGCACATTTAGATTGAAAACAACATCTAGATGGTCACCT
Alignments
lowQualScore : 11 11 11 55555555555555555 22222 66666666666666 111 11 222222 11111111111 1111 111 1 3333333 22222222 1 1 222222 222222 11 111 222222222222222 11 2222222 11 1 222222222 3333333333 1111 111 111 111 11 1111 11 1 11 1111111
lowQualScore : 7777 3 6 6 6 99 6 6 8 8 8 0 1 11 555 1 3 11 8 11 8 66666666666666666 8 6 6 1 6 6 6 99 6 6 6 6 6 6 6 888 6 6 6 77777 6 99 6 88888888888888 6 111 99 6 44 99 111111 0 66666666666 6 4444 111 6 77 2 3 6 0000000 6 99 44444444 6 3 6 3 1 6 6 1 6 666666 6 3 333333 11 8 8 8 444 8 222222222222222 1 8 11 2222222 8 55 3 6 666666666 3333333333 7777 444 8 88 444 000 8 77 4444 11 8 3 0 33 4 3 3 3333333 4
lowQualScore : .... . . . . .. . . . . . . . .. ... . . .. . .. . ................. . . . . . . . .. . . . . . . . ... . . . ..... . .. . .............. . ... .. . .. .. ...... . ........... . .... ... . .. . . . ....... . .. ........ . . . . . . . . . ...... . . ...... .. . . . ... . ............... . . .. ....... . .. . . ......... .......... .... ... . .. ... ... . .. .... .. . . . .. . . . ....... .
lowQualScore : 7777 0 7 7 7 22 7 7 0 0 0 8 0 00 888 0 8 00 0 00 0 00000000000000000 0 0 7 0 7 7 7 22 7 7 7 7 7 7 7 777 7 7 7 77777 7 22 7 00000000000000 7 777 22 7 00 22 222222 8 22222222222 7 2222 777 7 77 5 3 7 8888888 7 22 22222222 7 3 7 3 0 7 7 0 7 777777 7 5 666666 00 0 0 0 000 0 222222222222222 0 0 00 0000000 0 88 3 7 777777777 2222222222 0000 000 0 88 000 000 0 00 8888 00 0 2 0 88 0 6 6 0000000 0
consensus : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACGCTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
Reference ( family-586 ) : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACGCTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
gi|1 : GTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-T-AAAAATATTGCCACCACGACG-G-AGGCGCTATTAAAGAAC--CGTAACTCTAATTTAAA-GGTGACAGCCC-AAAAGAAAAACAAACATTCGGATTTACA-----------------ACCAAACCTTCAATTGTGAACCA-TATCCCAAAATAAACACT--TCA-A-TTTCCG-TAAAG-TTCCTAAC-TTGGTTCTCG-AT-TCT-ATTTAA-AATAAA-TTTCAC-GTTGAGC--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAC----A-TTCGGTTAGCTAA----TG--CG----AT---TT-TCGCACAAGGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCTTATTT-GCC-AACT-TCCGTAAATTACA-CAA-TCTCTAAAC----AG-TTTCA-ACGTTAAAC--TC--AA--TT-TT-CA-AATC---GA-A---TTAA-AA-----ACTTT-TGTT--TAT---T---TT-TGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------TTAGAAT----TCAACC---AGATCAAGC---TGCTT-TT-ATCAGAATGTCGG----TAAGGGCCTACGTTTTGGAGTGTAAATTTTTATCGTAGGAATGCTCCT--AGACGTTTGTAGTCACAGCAC-GC-TGTGATTGAAAAACGGC-------TAGAGTGACC
gi|10 : CTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATTGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGA-ATGCTCCT--AGACATTTGTCA-CAG-GCACGGC-TGT-ATTGACAAACAGC-------TAG-GTGACCt
gi|11 : CCAAGTCACGC----AAGCCGTTTGACTCCCCACTCAAA
gi|11 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtattattgtcgcagagcacggctgtattgacaaacggctaggtgacctagac
gi|12 : ccaagtcacgcaagccgtttgactccccactcaaatattaTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACtagac
gi|12 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGAC-------TAG-GTGACCattgtcgcagagcacggctgtattgacaaacgactaggtgacctaga
gi|13 : taggtcacgcaagccgtttgactccccactcaaacaCTAGGTCACGC----AAGCCGTTTGAATTACCACTtaga
gi|13 : cGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GCAATCgtttgtcgcagagcacggctgtattgacaaacggctaggcaatctaa
gi|14 : cctaggtcacgcaagccgtttgaattaccactTAGGTTACGC----AAGCCGTTTGACTCCCCACTCtaa
gi|14 : TCG-CAGAGCACGGC-TGT-ATTGAGAAACGGCTACACTGTAG-GTGACCgcagagcacggctgtattgagaaacggctacactgtaggtgacctag
gi|15 : taggttacgcaagccgtttgactccccacCTAGGTCACGC----AAGCCGTTTGACTCCCTACTtag
gi|15 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtgtcgcagagcacggctgtattgacaaacggctaggtgacctaga
gi|16 : ctaggtcacgcaagccgtttgactccctacAT-ACCACGA-G-G-AG-CAC-----AAGAAC--GATAACTCTATTTTTAATGGTGACA--CCTAAAG--AAAACAAACATTCtaga
gi|17 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATGACCACC-TTGG-AG-CATTC--TAT-TTAAGAA
gi|18 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATAACCACC-TTGG-GG-CATTC--TAT-TTAAGAAat
gi|19 : CTAGATCATGC----AAGCCGTT-----------------GCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-at
gi|2 : CTAGGTCACGC----AAGCCGTTTGACTTCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCAAGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAA-----ATGGTGACA--AC-AAAG--AATACGAACATTCGGATT-ACT-----------------AC-AAACGTTCATTTGTGA-CTA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCTTAAC-TTGATTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGG-C--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAA----T-TTCGGT-AG--CA----TG-GCG----AT---TT-TC-CGCG-GGTGTTG-TTA-------AAGGGACT-AAC--ACGTCTGA--------ACT-ATTT-TCC-AACT-TCCGTAAAT-ACA-CAA-TTTCTAAACTAAAAGGTTTCA-GCGT---ACACTC--AA--TT-TG-CA-AATC---GA-A---T--A-AA-----ACAAT-TGGT--TAT---T---TT-TATCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-AGCAGAA-TTCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TAT-ATTGACAAACGAC-------TAG-GTGACC
gi|20 : ACGTTTGTCG-AAGAGCACGGC-TGT-GTTAACAAACGTG-------TAG-GTGACC
gi|22 : -TGT-ATTGACAAACGTC-------TAG-GTGACCta
gi|3 : TC-AT-T-TTATTTAAGA-TAAAATT---CTAGTGGGTTGAATA-T-----AA-ATGTTCCTGACAATCAGAT-AAATCTGGATCTAATGATCTTTTT-CCAACATATTAATTTGT-TTCGGT-AC--AGATATTG-GCG----ATATCTC-TC-CAAC-GGTCCTGTCTAGGAGCACAAGCTGCTAAAC--ACGTCTGAGAAAATACTCT-ATTCGGCCAAACTCTCCGTAAAT-ACA-CAATTCTCTCAAT----ATGGTTCA-GCGTAAAACGATC-CAT--TT-TT-CA-TATCAGAGA-ACACT--A-AAATATGACTGTGTGTT--TATTCGT---TT-CGTCGAGACCTTGCG-G-ATGCCACC---------Gtaga
gi|4 : aatcctaaatggttggaaaatatccaagaataaggtgaaaccaacaatcgatctcaacaaacctcgatcgatcctgtgatatatcccaaaataggtaacttaacctaataggaattaacaacacagtatataaaatctatcctcgtgagagttgtcttaatactatgaattgCTAGG-CACGCCAAAAAGCCGTTTGG-TCCCCACTCAACAGCCCTTGGTAGACATTTCTTATCTTAAAAATAGTAC-ACCACGA-G-G-AGGCGCTATTAAAGAACCGGGTAACTCTAATCTAAATGGTGACA--CC-AAAG--AAACAAAACATTCGGATT-ACA-----------------GC-AAACCTTCATTTG-GA-CCATTAT-CCAAA-TAAACACG--TTATA-ATTCCGTTAA-G-TTCTTAACTTTTATTCTTC-AT-T-T-ATCT-A-A-TAAA-TT-----AGT--GC--GATA-T-----G---------CGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----TATTC-GT-AG--AA----TG-GCG----AT---TT-T--CACA--GTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GTC-AACG-TCTGTAAGT-ACA-CTT-TCTCTAA------AGGTTTCA-GCGTAAA
gi|5 : TTGTGA---A-TATCCC----TAAGCATGGTTTGTAATTTCCG-GAA-GGTTCTTCAT-TTTCTTCTTCCATCT-T-ATTCAA-A-TA----T---T-AGTGGGC--GATAGT-----AAGA----CCTGACA-TCACGTGAAAT--G---C--ATGA-CTTTTTTCAAAT--ATCAA----T-T-CGGT--G--AT----TG-GCA----AT---TT-TC-CA-A-GGTGTTG-ATA-------AAGCTGCT-AACCTACGTCTGA--------CCT-A-TT-GCC-AACT-TCGGT-AAT-A----GG-TCT-----------GGTGCCAGGCGTAACACACTCAGAAAGTTATT-CATAATC---GATA---T--T-AA-----ACTAT-TATTCGTAT---TAACTTGCACATCGACT-TGCGTGTATAGCACCGATTCATGTGTTATTCTCTACT---AAATATCTCAACCATAA-GTC--GCTCTTGC-TCTT-ATCAGAA-ATTGAAGTATAA--GCCT-c
gi|6 : aGT-AG--AA----TGTGCGTATCAT---TTATT-CACAAGGTGTTG-ATACA-----AAGTTGCT-AAT--GCATCTGA--------CCT-ATTTTGCC-AACTCTCGGTAAAT-ACAACTA-TCTCTAAA------GGTTTCG-GCGTAAACC-TTC-GAA--TT-TTTCA-AATC---GA-A---T--ACAA-----AATTT-TGTT--TAC---C---TT-TGTCTCGAC--TGCGAG-ATGCCACC---------GTTATT------A---AAA----TCAAC----A-ATC-AGC---TGC-C-TTGATTAGAA--TCGG---ATAG--GCCT-CGTTTTGTAGTGTAAATTTTTATCGT-TG-TTGCTCCTTAGGACG-TTGTCA-C-GAACATGGCTTGT-ATT
gi|7 : CTAGGTCACGC----AAGCCGTTTGACTCCCTACTtcacgtataacgacttgactggagtgatcct
gi|8 : atccatgccatcgaaagaaaaattacatgatatctgagaaaattcgccacacaacagaccctttaatatatcaattaaatcgattttttaaatctatattaatgctaataataaaaagttatcttattcacaaattcaagtatgcacaccccacatgtattgaacctacttgtatctgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatcgtagcTAAAAATATTAC-ACAGCGG-GTGTATGTACTGTTTAAGAAC--AGTAACTCTATTGTAAACGGTGACA--CC-AAAG--AAAACAAACATTAAGATT-ACAACAATTATTGAATTACAAC-AAACCCTCA-TTAT-A-CAA-TAT-CCAAA-TAAACACA--TTATA-TTTCTG-TAA-G-TTCCTAAC-TTGGTCTTT
gi|9 : TT-GCA-----------------AC-AAACCTTTATT-GTGA-CCG-TATCCCAAA-TATACACA--ATATC-TTTCTG-TAA-G-TTCCTAAC-TTGGTCATTC-AT-T-A-GTTTAA-A-GAAA-TT-----AGT-GGC--AATA-TTATCAGA-ATATTCCTGACA-TCACTTGAATTCTG---C--AGGT-CTTATT-CAAAC--Aa
blockSeqs : CAAA A C T A CT C . . T T A CG TTT T T . T . . ACAATTATTGAATTACA . T . T T C . GT A T . G T C C TT G . A CT G TG G TATCAGAATATTC A GAT TA T TT AT TTTGT ACAGATAT T TATC ATC A C C A T GGAGCAC A CT GAAAATAC . G A C C . A A T ACTAAA G A ACTCAG AG A T T AGA T CACTAAAATATG A G CG TCGT G CT T T GATTCATGT CTCTACT TATC ATA . A TCT TC G A AGTA . . A . TA . T . TACACTG .
blockSeqs : . A . . . . . . . . . A . ATC A T . . . . . . T . C . C . . . . . . . . . T . . . C G . . AAATGTTC . . . . T . TA AGCA . . . . C A . . CA . . . . T . C C . . A . AT . A GATCC . . . . . . TACAA G . . TAAC . T A . . T . . . A . T . T A . . A . . . . . . .
blockSeqs : . C . . . . . . . . . T . TTG A T . . . . . . T . A . C . . . . . . . . . T . . . T G . . AAGAC . . . . T . T AGAA . . . . C C . . . . . . . . . . T . . T . A . A ACTC . . . . . . TAAA A . . T . . . . . T . . . A . T . A A . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . . A . C . . . . . . . . C . . . . . . . . . . . T . . . . . . . G . . . . T . T AGAA . . . . T C . . . . . . . . . . G . . G . . . A TTCG . . . . . . TTAA T . . C . . . . . A . . . . . C . . A . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . . . A . . . . . . . G . . . . . . GAT . . . . . . . . . . . . . . . . G . . T . . . . . . . . . . . . .
blockSeqs : . C . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : ** ** T** C**** T* AGAA******* C* A***** ATTCG* TAAA*********** T****** T********* A* T** A* A*** **
originalCons : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAAC----AGGTTTCA-GCGTAAAACGCTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
finalCons : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-TT--ATTTAA-A-TAAA-TTC----AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGTAGAA-------TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAA-----AGGTTTCA-GCGTAAAACATTCG-AA--TT-TT-CA-AATC---GA-ATAAA-----------ACTNT-TGTT--TATT------TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATTT---------AAA----TCAACC---A-ATCA-GC---TGCT--TT-ATCAGAAA-TCGGA---TAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TGTATCATAGCACATTTAGATTGAAAACAACATCTAGATGGTCACCT
Alignments
lowQualScore : 11 11 11 55555555555555555 22222 66666666666666 111 11 222222 11111111111 1111 111 1 3333333 22222222 1 1 333333 222222 11 111 222222222222222 11 2222222 11 1 222222222 3333333333 1111 111 111 111 11 1111 11 1 11 1111111
lowQualScore : 7777 3 6 6 6 99 6 6 8 8 8 0 1 11 555 1 3 11 8 11 8 66666666666666666 8 6 6 1 6 6 6 99 6 6 6 6 6 6 6 888 6 6 6 77777 6 99 6 88888888888888 6 111 99 6 44 99 111111 0 66666666666 6 4444 111 6 77 2 3 6 0000000 6 99 44444444 6 3 6 3 1 6 6 1 6 7 000000 6 0 444444 11 8 8 8 444 8 222222222222222 1 8 11 2222222 8 55 3 6 666666666 3333333333 7777 444 8 88 444 000 8 77 4444 11 8 3 0 33 4 3 3 3333333 4
lowQualScore : .... . . . . .. . . . . . . . .. ... . . .. . .. . ................. . . . . . . . .. . . . . . . . ... . . . ..... . .. . .............. . ... .. . .. .. ...... . ........... . .... ... . .. . . . ....... . .. ........ . . . . . . . . . . ...... . . ...... .. . . . ... . ............... . . .. ....... . .. . . ......... .......... .... ... . .. ... ... . .. .... .. . . . .. . . . ....... .
lowQualScore : 7777 0 7 7 7 22 7 7 0 0 0 8 0 00 888 0 8 00 0 00 0 00000000000000000 0 0 7 0 7 7 7 22 7 7 7 7 7 7 7 777 7 7 7 77777 7 22 7 00000000000000 7 777 22 7 00 22 222222 8 22222222222 7 2222 777 7 77 5 3 7 8888888 7 22 22222222 7 3 7 3 0 7 7 0 7 2 555555 7 6 666666 00 0 0 0 000 0 222222222222222 0 0 00 0000000 0 88 3 7 777777777 2222222222 0000 000 0 88 000 000 0 00 8888 00 0 2 0 88 0 6 6 0000000 0
consensus : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAA-----AGGTTTCA-GCGTAAAACGCTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
Reference ( family-586 ) : CTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCACGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAATTTAAATGGTGACA--CC-AAAG--AAAACAAACATTCGGATT-ACA-----------------AC-AAACCTTCATTTGTGA-CCA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCCTAAC-TTGGTTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGGGC--GATA-T-----GA-A----CCTGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----T-TTCGGT-AG--AA----TG-GCG----AT---TT-TC-CACA-GGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GCC-AACT-TCCGTAAAT-ACA-CNA-TCTCTAAA-----AGGTTTCA-GCGTAAAACATTC-GAA--TT-TT-CA-AATC---GA-A---T--A-AA-----ACTNT-TGTT--TAT---T---TT-CGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACC
gi|1 : GTTTGACTCCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-T-AAAAATATTGCCACCACGACG-G-AGGCGCTATTAAAGAAC--CGTAACTCTAATTTAAA-GGTGACAGCCC-AAAAGAAAAACAAACATTCGGATTTACA-----------------ACCAAACCTTCAATTGTGAACCA-TATCCCAAAATAAACACT--TCA-A-TTTCCG-TAAAG-TTCCTAAC-TTGGTTCTCG-AT-TCT-ATTTAA-AATAAA-TTTCAC-GTTGAGC--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAC----A-TTCGGTTAGCTAA----TG--CG----AT---TT-TCGCACAAGGTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCTTATTT-GCC-AACT-TCCGTAAATTACA-CAA-TCTCTAAA-----CAGTTTCA-ACGTTAAAC--TC--AA--TT-TT-CA-AATC---GA-A---TTAA-AA-----ACTTT-TGTT--TAT---T---TT-TGTCTCGAC--TGCG-G-ATGCCACC---------GTTATT------TTAGAAT----TCAACC---AGATCAAGC---TGCTT-TT-ATCAGAATGTCGG----TAAGGGCCTACGTTTTGGAGTGTAAATTTTTATCGTAGGAATGCTCCT--AGACGTTTGTAGTCACAGCAC-GC-TGTGATTGAAAAACGGC-------TAGAGTGACC
gi|10 : CTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-ATCAGAA-ATTGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGA-ATGCTCCT--AGACATTTGTCA-CAG-GCACGGC-TGT-ATTGACAAACAGC-------TAG-GTGACCt
gi|11 : CCAAGTCACGC----AAGCCGTTTGACTCCCCACTCAAA
gi|11 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtattattgtcgcagagcacggctgtattgacaaacggctaggtgacctagac
gi|12 : ccaagtcacgcaagccgtttgactccccactcaaatattaTAGGTCACGC----AAGCCGTTTGACTCCCCACTCAAACtagac
gi|12 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGAC-------TAG-GTGACCattgtcgcagagcacggctgtattgacaaacgactaggtgacctaga
gi|13 : taggtcacgcaagccgtttgactccccactcaaacaCTAGGTCACGC----AAGCCGTTTGAATTACCACTtaga
gi|13 : cGTTTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GCAATCgtttgtcgcagagcacggctgtattgacaaacggctaggcaatctaa
gi|14 : cctaggtcacgcaagccgtttgaattaccactTAGGTTACGC----AAGCCGTTTGACTCCCCACTCtaa
gi|14 : TCG-CAGAGCACGGC-TGT-ATTGAGAAACGGCTACACTGTAG-GTGACCgcagagcacggctgtattgagaaacggctacactgtaggtgacctag
gi|15 : taggttacgcaagccgtttgactccccacCTAGGTCACGC----AAGCCGTTTGACTCCCTACTtag
gi|15 : TTGTCG-CAGAGCACGGC-TGT-ATTGACAAACGGC-------TAG-GTGACCtgtcgcagagcacggctgtattgacaaacggctaggtgacctaga
gi|16 : ctaggtcacgcaagccgtttgactccctacAT-ACCACGA-G-G-AG-CAC-----AAGAAC--GATAACTCTATTTTTAATGGTGACA--CCTAAAG--AAAACAAACATTCtaga
gi|17 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATGACCACC-TTGG-AG-CATTC--TAT-TTAAGAA
gi|18 : TAGGTCACAC----AAGCTGTTTGACTCCCCAAATAACCACC-TTGG-GG-CATTC--TAT-TTAAGAAat
gi|19 : CTAGATCATGC----AAGCCGTT-----------------GCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-at
gi|2 : CTAGGTCACGC----AAGCCGTTTGACTTCCCACTCAAACGCC-TTGG-AG-CATTC--TAT-TTAAAAATATTAC-ACCAAGA-G-G-AGGCGCTATTAAAGAAC--GGTAACTCTAA-----ATGGTGACA--AC-AAAG--AATACGAACATTCGGATT-ACT-----------------AC-AAACGTTCATTTGTGA-CTA-TATCCCAAA-TAAACACG--TTATA-TTTCCG-TAA-G-TTCTTAAC-TTGATTCTTC-AT-T-T-ATTTAA-A-TAAA-TT---C-AGTGG-C--GATA-T-----G--------CTGACA-TCACGTGAAATCTG---C--ATGA-CTTTT--CAAAC--ATCAA----T-TTCGGT-AG--CA----TG-GCG----AT---TT-TC-CGCG-GGTGTTG-TTA-------AAGGGACT-AAC--ACGTCTGA--------ACT-ATTT-TCC-AACT-TCCGTAAAT-ACA-CAA-TTTCTAAACTAAAAGGTTTCA-GCGTA---CACTC--AA--TT-TG-CA-AATC---GA-A---T--A-AA-----ACAAT-TGGT--TAT---T---TT-TATCTCGAC--TGCG-G-ATGCCACC---------GTTATT------T---AAA----TCAACC---A-ATC-AGC---TGC-T-TT-AGCAGAA-TTCGG---ATAA--GCCT-CGTTTTGGAGTGTAAATTTTTATCGTAGG-ATGCTCCT--AGACGTTTGTCG-CAGAGCACGGC-TAT-ATTGACAAACGAC-------TAG-GTGACC
gi|20 : ACGTTTGTCG-AAGAGCACGGC-TGT-GTTAACAAACGTG-------TAG-GTGACC
gi|22 : -TGT-ATTGACAAACGTC-------TAG-GTGACCta
gi|3 : TC-AT-T-TTATTTAAGA-TAAAATT---CTAGTGGGTTGAATA-T-----AA-ATGTTCCTGACAATCAGAT-AAATCTGGATCTAATGATCTTTTT-CCAACATATTAATTTGT-TTCGGT-AC--AGATATTG-GCG----ATATCTC-TC-CAAC-GGTCCTGTCTAGGAGCACAAGCTGCTAAAC--ACGTCTGAGAAAATACTCT-ATTCGGCCAAACTCTCCGTAAAT-ACA-CAATTCTCTCAAT----ATGGTTCA-GCGTAAAACGATC-CAT--TT-TT-CA-TATCAGAGA-ACACT--A-AAATATGACTGTGTGTT--TATTCGT---TT-CGTCGAGACCTTGCG-G-ATGCCACC---------Gtaga
gi|4 : aatcctaaatggttggaaaatatccaagaataaggtgaaaccaacaatcgatctcaacaaacctcgatcgatcctgtgatatatcccaaaataggtaacttaacctaataggaattaacaacacagtatataaaatctatcctcgtgagagttgtcttaatactatgaattgCTAGG-CACGCCAAAAAGCCGTTTGG-TCCCCACTCAACAGCCCTTGGTAGACATTTCTTATCTTAAAAATAGTAC-ACCACGA-G-G-AGGCGCTATTAAAGAACCGGGTAACTCTAATCTAAATGGTGACA--CC-AAAG--AAACAAAACATTCGGATT-ACA-----------------GC-AAACCTTCATTTG-GA-CCATTAT-CCAAA-TAAACACG--TTATA-ATTCCGTTAA-G-TTCTTAACTTTTATTCTTC-AT-T-T-ATCT-A-A-TAAA-TT-----AGT--GC--GATA-T-----G---------CGACA-TCACGTGAAATCTG---C--ATGA-CTTTTT-CAAAC--ATCAA----TATTC-GT-AG--AA----TG-GCG----AT---TT-T--CACA--GTGTTG-ATA-------AAGCTGCT-AAC--ACGTCTGA--------CCT-ATTT-GTC-AACG-TCTGTAAGT-ACA-CTT-TCTCT-AA-----AGGTTTCA-GCGTAAA
gi|5 : TTGTGA---A-TATCCC----TAAGCATGGTTTGTAATTTCCG-GAA-GGTTCTTCAT-TTTCTTCTTCCATCT-T-ATTCAA-A-TA----T---T-AGTGGGC--GATAGT-----AAGA----CCTGACA-TCACGTGAAAT--G---C--ATGA-CTTTTTTCAAAT--ATCAA----T-T-CGGT--G--AT----TG-GCA----AT---TT-TC-CA-A-GGTGTTG-ATA-------AAGCTGCT-AACCTACGTCTGA--------CCT-A-TT-GCC-AACT-TCGGT-AAT-A----GG-TCT-----------GGTGCCAGGCGTAACACACTCAGAAAGTTATT-CATAATC---GATA---T--T-AA-----ACTAT-TATTCGTAT---TAACTTGCACATCGACT-TGCGTGTATAGCACCGATTCATGTGTTATTCTCTACT---AAATATCTCAACCATAA-GTC--GCTCTTGC-TCTT-ATCAGAA-ATTGAAGTATAA--GCCT-c
gi|6 : aGT-AG--AA----TGTGCGTATCAT---TTATT-CACAAGGTGTTG-ATACA-----AAGTTGCT-AAT--GCATCTGA--------CCT-ATTTTGCC-AACTCTCGGTAAAT-ACAACTA-TCTCTAAA------GGTTTCG-GCGTAAACC-TTC-GAA--TT-TTTCA-AATC---GA-A---T--ACAA-----AATTT-TGTT--TAC---C---TT-TGTCTCGAC--TGCGAG-ATGCCACC---------GTTATT------A---AAA----TCAAC----A-ATC-AGC---TGC-C-TTGATTAGAA--TCGG---ATAG--GCCT-CGTTTTGTAGTGTAAATTTTTATCGT-TG-TTGCTCCTTAGGACG-TTGTCA-C-GAACATGGCTTGT-ATT
gi|7 : CTAGGTCACGC----AAGCCGTTTGACTCCCTACTtcacgtataacgacttgactggagtgatcct
gi|8 : atccatgccatcgaaagaaaaattacatgatatctgagaaaattcgccacacaacagaccctttaatatatcaattaaatcgattttttaaatctatattaatgctaataataaaaagttatcttattcacaaattcaagtatgcacaccccacatgtattgaacctacttgtatctgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatcgtagcTAAAAATATTAC-ACAGCGG-GTGTATGTACTGTTTAAGAAC--AGTAACTCTATTGTAAACGGTGACA--CC-AAAG--AAAACAAACATTAAGATT-ACAACAATTATTGAATTACAAC-AAACCCTCA-TTAT-A-CAA-TAT-CCAAA-TAAACACA--TTATA-TTTCTG-TAA-G-TTCCTAAC-TTGGTCTTT
gi|9 : TT-GCA-----------------AC-AAACCTTTATT-GTGA-CCG-TATCCCAAA-TATACACA--ATATC-TTTCTG-TAA-G-TTCCTAAC-TTGGTCATTC-AT-T-A-GTTTAA-A-GAAA-TT-----AGT-GGC--AATA-TTATCAGA-ATATTCCTGACA-TCACTTGAATTCTG---C--AGGT-CTTATT-CAAAC--Aa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TGTATCATAGCACATTTAGATTGAAAACAACATCTAGATGGTCACCT