lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11 111111 111 555555555555555 11 11 22 88888888 1 44444444444 22 22222222222222222222222222222222222222222222222222222222222222222222222 222 22 1 222222 77777777777 11 33333 222 1 111 5555555555555 222 11 111111 11 22222222222222222 4444444444444 55555555555 11 4444444444444444444444 1111 1 22 2 222 11 111 55555555 11 333333333333333 999999999 22222222
lowQualScore : 6 22 5 6 4 4 55 7 5 4 77777 4 222222 000 222222222222222 2 99 8 99 3 6 0 66 2 6 44444444 6 6 6 5 6 55555555555 11 6 6 99999999999999999999999999999999999999999999999999999999999999999999999 3 3 2 3 666 111 77 3 3 5 4 77 6 999999 4 77777777777 88 88888 777 111 7 3 999 3333333333333 6 555 6 22 777777 11 3 22222222222222222 7 6 2 7777777777777 22222222222 4 2 3 33 3333333333333333333333 3333 7 77 8 0 111 11 6 111 55555555 1 99 2 333333333333333 666666666 44444444 6
lowQualScore : . .. . . . . .. . . . ..... . ...... ... ............... . .. . .. . . . .. . . ........ . . . . . ........... .. . . ....................................................................... . . . . ... ... .. . . . . .. . ...... . ........... .. ..... ... ... . . ... ............. . ... . .. ...... .. . ................. . . . ............. ........... . . . .. ...................... .... . .. . . ... .. . ... ........ . .. . ............... ......... ........ .
lowQualScore : 0 55 7 3 0 0 55 5 7 0 55555 0 444444 222 444444444444444 2 22 0 55 2 7 7 00 5 0 00000000 0 0 0 0 0 00000000000 00 0 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0 5 0 555 000 55 0 0 5 0 00 0 555555 0 00000000000 00 55555 555 555 3 3 000 7777777777777 7 444 0 22 888888 88 2 33333333333333333 0 0 5 0000000000000 00000000000 0 5 0 22 8888888888888888888888 5555 0 55 8 0 000 22 7 777 77777777 0 00 5 333333333333333 777777777 22222222 0
consensus : TGTGTGCGAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-A-AAC--TGTCA-AACT--TTACCAGAC-CAAAA-----GTAATTTTACCGGACCG--AAATTTTTAAC--A----TACAAAATTCACTTCTT-GGCACTT-GCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCANACATTCTGAACGTCTGAGGCTGTCACTTATAATGCGATGCCCTTTACTNACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTCTT-------TCTGTACCAGATGAAAA-TGTGTTC-----ACATCAGGNCCGGCTCTCCTNCNAAGCATGNTCGCATTTTCTTTGAAGCCAATTTNCTCCNTACTCNGNNCTGGCTCCAATTTTCTCNACCTCCGCA--AAAGAATGGCTTGGGTCACAGATTTCCCGTGGGGAATCACACCT-TTAGTA--TAC---------AT--TAGTTACAGAATACCG-ACTCATANTCCCCGCCAAAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATGATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTNTCATCGGGTCACCGACGGAAATTTNCTNTATCGNNTGAAATTCTTATTTCTACCTTGCTNGTATTTNAAGCCAGACNTTTTTATTTTT-GAAAAA---------CAGAA-------GTAGTAT-TATAATGGAAATTTATTATCGTCGAGAAGGAA-A-GTACCGGACATT-TGGTCAG---AAGTTCT-CAAAATTTTACCGGACCGACT-CATTTTTCACCG----G----------AAATGTCCGA---GTCCGA--------CGTATTTCGCACACACTG
Reference ( gi|1 ) : TGTGTACGAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-A-AAC--TGTCA-AACT--TTACCAGAC-CAAAA-----GTAATTTTACCAGACCG--AAATTTCTATC--A----T--AAAATTTAC-TCTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTTAAGAAA-TTAATGCTCACACATTCTGAATGTCTAAGGCTGTCACTTGC--CGTTATGCCCTTTACTGACTGTTTTCTTGTTCTCTTATAGAATCAATTCTAGAATAATTTGCTTTGGACACGAACTTGCAGTATCTTGAGTATGACATTTTCCTTTCTCTTGAAAGTTTCCATACCAGATGAAAAATATATTTTAAAAAAAAAAGGATCGGTTCTCCTTCCAAGCATGATCGTATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTAGCTCCAATTTTCTCAACCTTCGTATTAAAGAATGGCTTGGGTCACCGATTTCCAACAGGGAATCACACCT-TTAGTA--CAC---------AT--TAGTTACAGAATACCAGACTTATAACCCCTGCTGGAAATATGGTACTGGCCTTCCAGGCATGCGCATCAATAATTTTT-GGTAGCCCAATCCCGACTATACTAGCTACTGTCATTGGGTTACCAATGGAAATGTACTTCATCGACTAAAATTCTTATTTTTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAGTAT-TATAAAGGAA--TTATTATTGTC-AGAAGAAA-A-ATACCAGACATT-TGGTCAG---AATCCCTACAAAATTTTACTGGACCGACA-CATTTTTCACCG----G----------AAAT---------GTCCGA--------CGTATTTCGCACACACTGG
gi|5 : TGTGTGCGAATGATTTTTAATTTTACAGGACAT-TTGGTCTGGT-A-AAC--TGTCA-AACT--TTACCAGAC-CAAAA-----GTAATTTTACCGGACCG--AAATTTTTAACGTA----C--AAAATTAAC-TCTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAA-CTAATGTTCACACATTCTGAATGTCTGAGGCTGTCACTT
gi|16 : gTGTGTGCAAATAAATTTTAATTTTAATGGACAT-TCGGTCTGGT-A-ATC--AGTTA-AGCT--ATACCAGAC-CAAAG-----GTAGT
gi|8 : gGATTGATTTTTAATGT-ACAGGACAT-T-GGTCTGGTAA-AAC--TGTCA-AAAC--TTACCAGAC-TTAAA------TAATTTTACTGGACCG--AAATTTTAAAC--A----TACAAAATTCACTTCTT-GGCACTT-GC-GTTTT
gi|9 : gtgtgtcgctgaGAATGATTTTTAATT--ACAG-ACATCTTGGTCTGGT-A-AAC--TGTCA-AAC---TTACCAGACTTTAAA-----GTATTTTT---GGACCGAAAAATTTA-AAC--A----TACAAAATTCACTTCTTGGGCACTTGGCTGTT
gi|10 : gtgtgtcgctgGGCAT-TCGGTCTGGT-A-AAC--TGTCA-AGCA--ATCCCAGAC-CAACT-----GTAATTTTACCAGACCA--AAATTTTTAGC--ATT--T--AAAATTTAT-TCTT-TGCAATT-AATGTTTTTAAATACCGTCAATAAAG--CAAGA
gi|5 : ACTT-TTGGTCTGGT-A-AAG--TTTGA-CAGT--TTACCAGAC-CAAAT-----GTttagt
gi|16 : gtgtgtgcgaatgatttttaattttacaggACCT-TTGGTCTGGT-ATAGC--T-T---AACTGATTACCAGAC-CGAAT-----GTaattttaccggaccgaaatttttaacgtacaaaattaactcttggcactttctgttttcaaatactctcattaaaggttaaaaaactaatgttcacacattctgaatgtctgaggctgtcactt
gi|8 : gtgtgtgcaaataaattttaattttaatggGTCTGGT-A-AGT--TTTGACAGTT--TTACCAGAC-CAAagt
gi|9 : gtgtgtcgctgagattgatttttaatgtacaggacaGTCTGGT-A-AGT--T-TGA-CAGT--TTACCAGAC-CAAGATGTCTGTAATTttaaataattttactggaccgaaattttaaacatacaaaattcacttcttggcacttgcgtttt
gi|17 : gtgtgtcgctggaatgatttttTCCGGT-A-AATAATTTTA-A--T--TTACCAAAC-CAAAA-----GTAATATTACCAGACC---AAACTTTTAtttaaagtatttttggaccgaaaaatttaaacatacaaaattcacttcttgggcacttggctgtt
gi|16 : TTACCAGACCG---AATGTCCATT--AAAATT--AAAATTTA----TT-TGCACa
gi|14 : gtgtTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCAAACATTCTAAACATCTGAGGCTGTCACTTATAATGCGATGCCCTTTACTtcagttaagctataccagaccaaaggtagt
gi|3 : ACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTCTT-------TCTGTACCAGATGAAAA-TGTGTTC-----ACATCAGGCCCAGCTCTCCTGCCAAACATACTGACATTTTTT---AAACCAATTTGCTTCCT-CTCAGTGTTGGCT------TTCTCTACCTCTG----AAAG---GG--TGGGTTA-----TTTCAGTAAGG-----C-CCTATCAGGAACCAC---------ATCCTATTTATA-----------TCATAATCTCT-CAGTAAATGT--TACTGGTCCACCGGGCATGCACGTCAATAATTTTT-GGT------ATCCCGATTTTACTAGCCACAGTCATCAGGCTACCA
gi|2 : tttGGATCGGTTCTCCTTCAAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATCTGGCTCCAATTTTTTCAACCTTCGCA----AGAATGGCTTGGGTCACAGATTTCCCATGGAGAATCACACCT-TTAGTA--TACCATGTATACAT--TAGCTACAGAATACCGGACTCATAAACCCCGCCAGAAATATGGTACTGGCCCTCCAGTCATGCACATCAATGATTTTT-GGTAGCCCAATCC------------CCACTGTCGTTGGGTTACCGATGGAAAT-TACTT-----AATAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACCTTTTTATTTTT-GAAAAA---------CGGAA-------GTAGTAT-TATAATGGAA--TTATTATCGTC-AGAAGAAA-A-GTACCGGACATT-TGGTCAG---AAGTTCTACAAAATTTTACCGAACCGACT-CATTTTTCACCG----G----------AAATATCCGACG-GTCCGA--------CGTATTTCGCACActtactttcgaagactgcag
gi|19 : CACACTT-TTAGTA--TAC---------AT--TAGTTACAGAATGCCGAACTCAT
gi|4 : AATACCA--CTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCATCAAT-------------------CCCGACTGTACTAGCCACTTTCATTGGGTCATCAACAAAAATTTTCTGTATCGTCTGAAATTCTT-----------GCTAGTATTTGAAGCCAAACATTTTTATTTT--GAAAAAAAAAACAAACAAAAAAAACCAGTAGTAT-GATAATGGAA--ATACTATAGTC-AGAAAAAATATATACCAGGCATT-TGGTCTG---AAGTTCTTCAAAATTTTACTGGACTGACT-CATTTTTAAATG----G----------AAAT---------GTTCGATTGTCCAGCATATTTCGCACACTCTG
gi|12 : AATACCA--CTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCAT-------------------CAATCCCGACTGTACTAGCCACTTTCATTGGGTCATC
gi|15 : TGTTACTAGCACACTGGGCATGCAAGTCAATAATTTTTGGGTAGCC
gi|18 : atggtcagtcaatagaacTGCGCATCGATGACTTTT-GGTAGCCCAATCCCGACTATACTAGacggtcataggactac
gi|7 : TTTATTTTTTGAAAAA---------CAGAA-------GTAGT---TATAATGGAAATTTATTATCGTTGAGAAGGAA-A-GTACTGGACATT-TGGTCAG---AA----------GTTCTACCAGACCGACT-CATTTTTCACTG----G----------AAATGCTGACG--GTCCGA--------CGTTATTCGCAAACAC
gi|6 : gTTTTT-GAAAA----------CAGAA-------GTAG-ATATATAATGGAAATTTATTATCGTTGAGAAGGAA-AGATACT-GACATTGTGGTCAG---AA----------GTTCTACCAGACCGACT-CATTTTTCACTG----G----------AAATGTCTGGACGGTCCGA--------CGTA-TTCGCAAACACT
gi|5 : tTACAGGACATT-TGGTCTGGTAAA---CTGTCAAACTTTACCAGACCAAAAGTAATTTT-ACCGGACCG----------AAAT---------TTTTAA--------CGTAaa
gi|11 : gtgtgtgcgaatgatttttaatttCATT-TGGTCAG---AAGTTCTACAAAATTTTACTGGACCGACC-CATTTTTCACCG----GACTTCACCGAAAATGTCCGACG-GTCCGA--------CGTATTTCGCACACACTcaaaattaactcttggcactttctgttttcaaatactctcattaaaggttaaaaaactaatgttcacacattctgaatgtctgaggctgtcactt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAAAAAAACTGCCGGACATTTTGACCGATAAAACTGAATTTTATCGGACTCATCAAAAATCTTCGGGGATCCCCGATGGTCCGGCGCGTTTCG
Alignments
lowQualScore : 1 222 11 11 333 222 88888888888888888888888 2 55555 33 2222 444444444 333 11 3333333333 2222222 111 2 111 3333 111111 2222222222 444444
lowQualScore : 6 555 66 6 3 5 77 2 5 1 6 3 1 11 8 11 0 7 7 1 0 88 2 1 2 4 4 55 2 555 111 77777777777777777777777 0 00000 2 66 11 0 1 1 1 7 00 1 1 7 11 222 7 1 0 9999 7 7 99 3 3 3 000000000 2 000 1 44 0 1 11 1 7 5 7777 3 1 2 0 0 7 1 33 22 0 88888 1 1 1 88 2222222222 6666666 11 8 222 0 0 6 222 3 5 5 3333 666666 0 5555555555 66 555555 1
lowQualScore : . ... .. . . . .. . . . . . . .. . .. . . . . . .. . . . . . .. . ... ... ....................... . ..... . .. .. . . . . . .. . . . .. ... . . . .... . . .. . . . ......... . ... . .. . . .. . . . .... . . . . . . . .. .. . ..... . . . .. .......... ....... .. . ... . . . ... . . . .... ...... . .......... .. ...... .
lowQualScore : 0 000 44 7 7 7 99 3 7 0 7 2 4 66 0 22 8 3 3 0 7 55 5 0 5 0 0 55 5 000 000 00000000000000000000000 0 00000 5 55 77 7 0 0 0 3 77 0 0 3 77 777 3 0 7 3333 3 7 77 7 2 2 000000000 5 888 0 66 8 0 77 4 6 7 0000 7 0 8 7 7 3 0 33 00 7 00000 0 0 0 88 8888888888 0000000 66 0 000 0 7 7 888 7 7 7 4444 444444 7 0000000000 66 999999 7
consensus : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTCATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAGTAT-TATAATGGAAATTTATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGA-AGTTCTACAAAATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCCG---ACGGTCCGACGTATTTCGCACACACTG
Reference ( family-5743 ) : TGTGT-GC---GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-GCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCANACATTCTGAACGTCTGAGGCTGTCACTTATAATGCGATGCCCTTTACTNACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTCTT-------TCTGTACCAGATGAAAA-TGTGTTC-----ACATCAGGNCCGGCTCTCCTNCNAAGCATGNTCGCATTTTCTTTGAAGCCAATTTNCTCCNTACTCNGNNCTGGCTCCAATTTTCTCNACCTCCGCA--AAAGAATGGCTTGGGTCACAGATTTCCCGTGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATANTCCCCGCCAAAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATGATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTNTCATCGGGTCACCGACGGAAATTTNCTNTATCGNNTGAAATTCTTATTTCTACCTTGCTNGTATTTNAAGCCAGACNTTTTTATTTTT-GAAAAA---------CAGAA-------GTAGTAT-TATAATGGAAATTTATTATCGTCGAGAAGGAA-A-G-TACCGGACATT-TGGTCAGA-AGTTCT-CAAAATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCCG---A--GTCCGACGTATTTCGCACACACTG
gi|1 : TGTGT-AC---GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCAGACCGAAATTTCTAT-CATA--AAATTTACT-CTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTTAAGAAA-TTAATGCTCACACATTCTGAATGTCTAAGGCTGTCACTTGC--CGTTATGCCCTTTACTGACTGTTTTCTTGTTCTCTTATAGAATCAATTCTAGAATAATTTGCTTTGGACACGAACTTGCAGTATCTTGAGTATGACATTTTCCTTTCTCTTGAAAGTTTCCATACCAGATGAAAAATATATTTTAAAAAAAAAAGGATCGGTTCTCCTTCCAAGCATGATCGTATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTAGCTCCAATTTTCTCAACCTTCGTATTAAAGAATGGCTTGGGTCACCGATTTCCAACAGGGAATCACACCTTTAGTACAC---------ATTAGTTACAGAATACCAG-ACTTATAACCCCTGCTGGAAATATGGTACTGGCCTTCCAGGCATGCGCATCAATAATTTTT-GGTAGCCCAATCCCGACTATACTAGCTACTGTCATTGGGTTACCAATGGAAATGTACTTCATCGACTAAAATTCTTATTTTTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAGTAT-TATAAAGGAA--TTATTATTGTC-AGAAGAAA-A-A-TACCAGACATT-TGGTCAGA-ATCCCTACAAAATTTTACTGGACCGACACAT------TTTTCACCGG----------AAAT-----------GTCCGACGTATTTCGCACACACTG
gi|10 : GGCAT-TCGGTCTGGT-AAAC--TGTCAAGCAATCCCAGACCA-ACTGTAATTTTACCAGACCAAAATTTTTAG-CATTTAAAATTTA-TTCTT-TGCAATT-AATGTTTTTAAATACCGTCAATAAAGg
gi|11 : CATT-TGGTCAGA-AGTTCTACAAAATTTTACTGGACCGACCCAT------TTTTCACCGGACTTCACCGAAAATGTCCG---ACGGTCCGACGTATTTCGCACACACTcaagattagt
gi|12 : AATACC---ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCAT-------------------CAATCCCGACTGTACTAGCCACTTTCATTGGGTCATC
gi|13 : AAAAAA-A-C-TGCCGGACATT-TTGACCGATAAAACT---GAATTTTATCG----GACTCATCAAAAATCTT---CGG----------GGATCCCCG---ATGGTCCGGCGCGTTTCG
gi|14 : aTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCAAACATTCTAAACATCTGAGGCTGTCACTTATAATGCGATGCCCTTTACT
gi|15 : TGTTACTAGCACACTGGGCATGCAAGTCAATAATTTTTGGGTAGCC
gi|16 : atggtcagtcaatagaacTGTGT-GC---AAATAAATTTTAATTTTAATGGACAT-TCGGTCTGGT-AATC--AGTTAAGCTATACCAGACCA-AAGGTAGTacggtcataggactac
gi|17 : gTCCGGT-AAATAATTTTAA--TTTACCAAACCA-AAAGTAATATTACCAGACC-AAACTTTTAA-
gi|18 : TGCGCATCGATGACTTTT-GGTAGCCCAATCCCGACTATACTAG
gi|19 : CACACTTTTAGTATAC---------ATTAGTTACAGAATGCC-GAACTCAT
gi|2 : GGATCGGTTCTCCTTCAAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATCTGGCTCCAATTTTTTCAACCTTCGCA--A--GAATGGCTTGGGTCACAGATTTCCCATGGAGAATCACACCTTTAGTATACCATGTATACATTAGCTACAGAATACC-GGACTCATAAACCCCGCCAGAAATATGGTACTGGCCCTCCAGTCATGCACATCAATGATTTTT-GGTAGCCCAATCC------------CCACTGTCGTTGGGTTACCGATGGAAA-TTACTT-----AATAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACCTTTTTATTTTT-GAAAAA---------CGGAA-------GTAGTAT-TATAATGGAA--TTATTATCGTC-AGAAGAAA-A-G-TACCGGACATT-TGGTCAGA-AGTTCTACAAAATTTTACCGAACCGACTCAT------TTTTCACCGG----------AAATATCCG---ACGGTCCGACGTATTTCGCACA
gi|3 : TTACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTCTT-------TCTGTACCAGATGAAAA-TGTGTTC-----ACATCAGGCCCAGCTCTCCTGCCAAACATACTGACATTTTTT---AAACCAATTTGCTTCCT-CTCAGTGTTGGC------TTTCTCTACCTCTG----AAAGGGTGGGTTATTTCAGTAAGGCCCTATCAGGAACCACATCC----TAT----------------TTATA------------TCATAATCTC--TCAGTAA-ATGTTACTGGTCCACCGGGCATGCACGTCAATAATTTTT-GGT------ATCCCGATTTTACTAGCCACAGTCATCAGGCTACC
gi|4 : tAATACC---ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCATCAAT-------------------CCCGACTGTACTAGCCACTTTCATTGGGTCATCAACAAAAATTTTCTGTATCGTCTGAAATTCTT-----------GCTAGTATTTGAAGCCAAACATTTTTATTTT--GAAAAAAAAAACAAACAAAAAAAACCAGTAGTAT-GATAATGGAAAT--ACTATAGTC-AGAAAAAATATA-TACCAGGCATT-TGGTCTGA-AGTTCTTCAAAATTTTACTGGACTGACTCAT------TTTTAAATGG----------AAATGTTCG---ATTGTCCAGCATATTTCGCACACTCTGacttactttcgaagactgcag
gi|5 : TGTGT-GC---GAATGATTTTTAATTTTACAGGACAT-TTGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CGTACAAAATTAAC-TCTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTT-AAAAAACTAATGTTCACACATTCTGAATGTCTGAGGCTGTCACTT
gi|6 : gTTTTT-GAAAA----------CAGAA-------GTAG-ATATATAATGGAAATTTATTATCGTTGAGAAGGAA-A-GATACT-GACATTGTGGTCAGA-AGTTC----------TACCAGACCGACTCAT------TTTTCACTGG----------AAATGTCTGGACG--GTCCGACGTA-TTCGCAAACACT
gi|7 : tTTTATTTTTTGAAAAA---------CAGAA-------GTAGT---TATAATGGAAATTTATTATCGTTGAGAAGGAA-A-G-TACTGGACATT-TGGTCAGA-AGTTC----------TACCAGACCGACTCAT------TTTTCACTGG----------AAATG-CTG---ACGGTCCGACGTTATTCGCAAACACaa
gi|8 : gTGTGTCGCTGAGATTGATTTTTAATGT-ACAGGACAT-T-GGTCTGGTAAAAC--TGTCAAAACTTACCAGACTT-AAA-TAATTTTACTGGACCGAAATTTTAAA-CATACAAAATTCACTTCTT-GGCACTT-GC-GTTTT
gi|9 : gTGTGTCGCTG-GAATGATTTTTAATT--ACAG-ACATCTTGGTCTGGT-AAAC--TGTCAAACTT-ACCAGACTTTAAAGTATTTTT---GGACCGAAAAATTTAAACATACAAAATTCACTTCTTGGGCACTTGGCTGTT
Alignments
lowQualScore : 1 222 11 222 111 333333333 3333333 1 22222 11 2222 444444444 333 11111 1 3333333333 2222222 111 2 111 11111111 111111 2222222222
lowQualScore : 5 666 66 6 3 5 77 2 5 1 6 3 1 11 8 99 0 7 7 0 88 2 1 1 1 1 22 2 111 666 888888888 2222222 5 77777 1 22 7 88 7 7 9999 7 1 1 44 3 3 000000000 2 000 1 44 0 1 11 1 5 5 7777 3 22222 3 2 2 3 88888 88 2222222222 6666666 8 0 5 222 0 6 222 3 5 33333333 666666 0 5555555555 66 5 1
lowQualScore : . ... .. . . . .. . . . . . . .. . .. . . . . .. . . . . . .. . ... ... ......... ....... . ..... . .. . .. . . .... . . . .. . . ......... . ... . .. . . .. . . . .... . ..... . . . . ..... .. .......... ....... . . . ... . . ... . . ........ ...... . .......... .. . .
lowQualScore : 0 000 44 7 7 7 99 3 7 0 7 2 4 66 0 00 8 3 3 7 55 5 0 0 0 0 00 5 000 000 000000000 5555555 5 55555 0 00 3 33 3 3 3333 3 0 0 33 2 2 000000000 5 888 4 66 8 0 77 4 7 7 0000 7 22222 2 8 5 5 00000 88 8888888888 0000000 0 8 6 000 0 7 888 7 7 00000000 444444 7 0000000000 66 7 7
consensus : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAATTTATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
Reference ( family-5743 ) : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTCATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAATTTATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
gi|1 : -GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCAGACCGAAATTTCTAT-CATA--AAATTTACT-CTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTTAAGAAA-TTAATGCTCACACATTCTGAATGTCTAAGGCTGTCACTTGC--CGTTATGCCCTTTACTGACTGTTTTCTTGTTCTCTTATAGAATCAATTCTAGAATAATTTGCTTTGGACACGAACTTGCAGTATCTTGAGTATGACATTTTCCTTTCTCTTGAAAGTTTCCATACCAGATGAAAAATATATTTTAAAAAAAAAAGGATCGGTTCTCCTTCCAAGCATGATCGTATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTAGCTCCAATTTTCTCAACCTTCGTATTAAAGAATGGCTTGGGTCACCGATTTCCAACAGGGAATCACACCTTTAGTACAC---------ATTAGTTACAGAATACCAG-ACTTATAACCCCTGCTGGAAATATGGTACTGGCCTTCCAGGCATGCGCATCAATAATTTTT-GGTAGCCCAATCCCGACTATACTAGCTACTGTCATTGGGTTACCAATGGAAATGTACTTCATCGACTAAAATTCTTATTTTTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAAAGGAA--TTATTATTGTC-AGAAGAAA-A-A-TACCAGACATT-TGGTCAGAATCCCTACAA---AATTTTACTGGACCGACACAT------TTTTCACCGG----------AAAT---------GTCCGACGTATTTCGCACACACTG
gi|10 : tgtgtacGGCAT-TCGGTCTGGT-AAAC--TGTCAAGCAATCCCAGACCA-ACTGTAATTTTACCAGACCAAAATTTTTAG-CATTTAAAATTTA-TTCTT-TGCAATT-AATGTTTTTAAATACCGTCAATAAAGg
gi|11 : CATT-TGGTCAGAAGTTCTACAA---AATTTTACTGGACCGACCCAT------TTTTCACCGGACTTCACCGAAAATGTCC-GACGGTCCGACGTATTTCGCACACACTcaagattagt
gi|12 : AATACC---ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCAT-------------------CAATCCCGACTGTACTAGCCACTTTCATTGGGTCATC
gi|13 : AAAAAA-A-C-TGCCGGACATT-TTGACCGA-----TAAAACTGAATTTTATCG----GACTCATCAAAAATCTT---CGG----------GGATCCCC-GATGGTCCGGCGCGTTTCG
gi|14 : aTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCAAACATTCTAAACATCTGAGGCTGTCACTTATAATGCGATGCCCTTTACT
gi|15 : TGTTACTAGCACACTGGGCATGCAAGTCAATAATTTTTGGGTAGCC
gi|16 : atggtcagtcaatagaacTGTGT-GC---AAATAAATTTTAATTTTAATGGACAT-TCGGTCTGGT-AATC--AGTTAAGCTATACCAGACCA-AAGGTAGTacggtcataggactac
gi|17 : gTCCGGT-AAATAATTTTAA--TTTACCAAACCA-AAAGTAATATTACCAGACC-AAACTTTTAA-
gi|18 : TGCGCATCGATGACTTTT-GGTAGCCCAATCCCGACTATACTAG
gi|19 : CACACTTTTAGTATAC---------ATTAGTTACAGAATGCC-GAACTCAT
gi|2 : GGATCGGTTCTCCTTCAAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATCTGGCTCCAATTTTTTCAACCTTCGCA--A--GAATGGCTTGGGTCACAGATTTCCCATGGAGAATCACACCTTTAGTATACCATGTATACATTAGCTACAGAATACC-GGACTCATAAACCCCGCCAGAAATATGGTACTGGCCCTCCAGTCATGCACATCAATGATTTTT-GGTAGCCCAATCCC------------CACTGTCGTTGGGTTACCGATGGAAATT-ACTTAAT-----AAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACCTTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAA--TTATTATCGTC-AGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGAACCGACTCAT------TTTTCACCGG----------AAATATCC-GACGGTCCGACGTATTTCGCACA
gi|3 : TTACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTC-------TTTCTGTACCAGATG-AAAATGTGTTC-----ACATCAGGCCCAGCTCTCCTGCCAAACATACTGACATTTTTT---AAACCAATTTGCTTCCT-CTCAGTGTTGGC------TTTCTCTACCTCTG----AAAGGGTGGGTTATTTCAGTAAGGCCCTATCAGGAACCACATCC----TAT----------------TTATA------------TCATAATCTC--TCAGTAA-ATGTTACTGGTCCACCGGGCATGCACGTCAATAATTTTT-GGT------ATCCCGATTTTACTAGCCACAGTCATCAGGCTACC-------ACTTACTT--TCGA
gi|4 : tAATACC---ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCATCAAT-------------------CCCGACTGTACTAGCCACTTTCATTGGGTCATCAACAAAAATTTTCTGTATCGTCTGAAATTCTT-----------GCTAGTATTTGAAGCCAAACATTTTTATTTT--GAAAAAAAAAACAAACAAAAAAAACCAGTAG-TATGATAATGGAAAT--ACTATAGTC-AGAAAAAATATA-TACCAGGCATT-TGGTCTGAAGTTCTTCAA---AATTTTACTGGACTGACTCAT------TTTTAAATGG----------AAATGTTC-GATTGTCCAGCATATTTCGCACACTCTGagactgcag
gi|5 : TGTGT-GC---GAATGATTTTTAATTTTACAGGACAT-TTGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CGTACAAAATTAAC-TCTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTT-AAAAAACTAATGTTCACACATTCTGAATGTCTGAGGCTGTCACTT
gi|6 : gTTTTT-GAAAA----------CAGAA-------GTAGATAT-ATAATGGAAATTTATTATCGTTGAGAAGGAA-A-GATACT-GACATTGTGGTCAGAAGTTC-------------TACCAGACCGACTCAT------TTTTCACTGG----------AAATGTCTGGACGGTCCGACGTA-TTCGCAAACACT
gi|7 : tTTTATTTTTTGAAAAA---------CAGAA-------GTAG-T--TATAATGGAAATTTATTATCGTTGAGAAGGAA-A-G-TACTGGACATT-TGGTCAGAAGTTC-------------TACCAGACCGACTCAT------TTTTCACTGG----------AAATG-CT-GACGGTCCGACGTTATTCGCAAACACaa
gi|8 : gTGTGTCGCTGAGATTGATTTTTAATGT-ACAGGACAT-T-GGTCTGGTAAAAC--TGTCAAAACTTACCAGACTT-AAA-TAATTTTACTGGACCGAAATTTTAAA-CATACAAAATTCACTTCTT-GGCACTT-GC-GTTTT
gi|9 : gTGTGTCGCTG-GAATGATTTTTAATT--ACAG-ACATCTTGGTCTGGT-AAAC--TGTCAAACTT-ACCAGACTTTAAAGTATTTTT---GGACCGAAAAATTTAAACATACAAAATTCACTTCTTGGGCACTTGGCTGTT
Alignments
lowQualScore : 1 222 11 222 111 333333333 3333333 1 22222 11 2222 444444444 333 11111 1 3333333333 2222222 111 2 111 11111111 111111 2222222222
lowQualScore : 5 666 66 6 3 5 77 2 5 1 6 3 1 11 8 99 0 7 7 0 88 2 1 1 1 1 22 2 111 666 888888888 2222222 5 77777 1 22 7 88 7 7 9999 7 1 1 44 3 3 000000000 2 000 1 44 0 1 11 1 5 5 7777 3 22222 3 0 2 3 88888 88 2222222222 6666666 8 0 5 222 0 6 222 3 5 33333333 666666 0 5555555555 66 5 1
lowQualScore : . ... .. . . . .. . . . . . . .. . .. . . . . .. . . . . . .. . ... ... ......... ....... . ..... . .. . .. . . .... . . . .. . . ......... . ... . .. . . .. . . . .... . ..... . . . . ..... .. .......... ....... . . . ... . . ... . . ........ ...... . .......... .. . .
lowQualScore : 0 000 44 7 7 7 99 3 7 0 7 2 4 66 0 00 8 3 3 7 55 5 0 0 0 0 00 5 000 000 000000000 5555555 5 55555 0 00 3 33 3 3 3333 3 0 0 33 2 2 000000000 5 888 4 66 8 0 77 4 7 7 0000 7 22222 2 8 5 5 00000 88 8888888888 0000000 0 8 6 000 0 7 888 7 7 00000000 444444 7 0000000000 66 7 7
consensus : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAATTTATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
Reference ( family-5743 ) : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAATTTATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
gi|1 : -GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCAGACCGAAATTTCTAT-CATA--AAATTTACT-CTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTTAAGAAA-TTAATGCTCACACATTCTGAATGTCTAAGGCTGTCACTTGC--CGTTATGCCCTTTACTGACTGTTTTCTTGTTCTCTTATAGAATCAATTCTAGAATAATTTGCTTTGGACACGAACTTGCAGTATCTTGAGTATGACATTTTCCTTTCTCTTGAAAGTTTCCATACCAGATGAAAAATATATTTTAAAAAAAAAAGGATCGGTTCTCCTTCCAAGCATGATCGTATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTAGCTCCAATTTTCTCAACCTTCGTATTAAAGAATGGCTTGGGTCACCGATTTCCAACAGGGAATCACACCTTTAGTACAC---------ATTAGTTACAGAATACCAG-ACTTATAACCCCTGCTGGAAATATGGTACTGGCCTTCCAGGCATGCGCATCAATAATTTTT-GGTAGCCCAATCCCGACTATACTAGCTACTGTCATTGGGTTACCAATGGAAATGTACTTCATCGACTAAAATTCTTATTTTTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAAAGGAA--TTATTATTGTC-AGAAGAAA-A-A-TACCAGACATT-TGGTCAGAATCCCTACAA---AATTTTACTGGACCGACACAT------TTTTCACCGG----------AAAT---------GTCCGACGTATTTCGCACACACTG
gi|10 : tgtgtacGGCAT-TCGGTCTGGT-AAAC--TGTCAAGCAATCCCAGACCA-ACTGTAATTTTACCAGACCAAAATTTTTAG-CATTTAAAATTTA-TTCTT-TGCAATT-AATGTTTTTAAATACCGTCAATAAAGg
gi|11 : CATT-TGGTCAGAAGTTCTACAA---AATTTTACTGGACCGACCCAT------TTTTCACCGGACTTCACCGAAAATGTCC-GACGGTCCGACGTATTTCGCACACACTcaagattagt
gi|12 : AATACC---ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCAT-------------------CAATCCCGACTGTACTAGCCACTTTCATTGGGTCATC
gi|13 : AAAAAA-A-C-TGCCGGACATT-TTGACCGA-----TAAAACTGAATTTTATCG----GACTCATCAAAAATCTT---CGG----------GGATCCCC-GATGGTCCGGCGCGTTTCG
gi|14 : aTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCAAACATTCTAAACATCTGAGGCTGTCACTTATAATGCGATGCCCTTTACT
gi|15 : TGTTACTAGCACACTGGGCATGCAAGTCAATAATTTTTGGGTAGCC
gi|16 : atggtcagtcaatagaacTGTGT-GC---AAATAAATTTTAATTTTAATGGACAT-TCGGTCTGGT-AATC--AGTTAAGCTATACCAGACCA-AAGGTAGTacggtcataggactac
gi|17 : gTCCGGT-AAATAATTTTAA--TTTACCAAACCA-AAAGTAATATTACCAGACC-AAACTTTTAA-
gi|18 : TGCGCATCGATGACTTTT-GGTAGCCCAATCCCGACTATACTAG
gi|19 : CACACTTTTAGTATAC---------ATTAGTTACAGAATGCC-GAACTCAT
gi|2 : GGATCGGTTCTCCTTCAAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATCTGGCTCCAATTTTTTCAACCTTCGCA--A--GAATGGCTTGGGTCACAGATTTCCCATGGAGAATCACACCTTTAGTATACCATGTATACATTAGCTACAGAATACC-GGACTCATAAACCCCGCCAGAAATATGGTACTGGCCCTCCAGTCATGCACATCAATGATTTTT-GGTAGCCCAATCCC------------CACTGTCGTTGGGTTACCGATGGAAATT-ACTTAAT-----AAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACCTTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAA--TTATTATCGTC-AGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGAACCGACTCAT------TTTTCACCGG----------AAATATCC-GACGGTCCGACGTATTTCGCACA
gi|3 : TTACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTC-------TTTCTGTACCAGATG-AAAATGTGTTC-----ACATCAGGCCCAGCTCTCCTGCCAAACATACTGACATTTTTT---AAACCAATTTGCTTCCT-CTCAGTGTTGGC------TTTCTCTACCTCTG----AAAGGGTGGGTTATTTCAGTAAGGCCCTATCAGGAACCACATCC----TAT----------------TTATA------------TCATAATCTC--TCAGTAA-ATGTTACTGGTCCACCGGGCATGCACGTCAATAATTTTT-GGT------ATCCCGATTTTACTAGCCACAGTCATCAGGCTACC-------ACTTACTT--TCGA
gi|4 : tAATACC---ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCATCAAT-------------------CCCGACTGTACTAGCCACTTTCATTGGGTCATCAACAAAAATTTTCTGTATCGTCTGAAATTCTT-----------GCTAGTATTTGAAGCCAAACATTTTTATTTT--GAAAAAAAAAACAAACAAAAAAAACCAGTAG-TATGATAATGGAAAT--ACTATAGTC-AGAAAAAATATA-TACCAGGCATT-TGGTCTGAAGTTCTTCAA---AATTTTACTGGACTGACTCAT------TTTTAAATGG----------AAATGTTC-GATTGTCCAGCATATTTCGCACACTCTGagactgcag
gi|5 : TGTGT-GC---GAATGATTTTTAATTTTACAGGACAT-TTGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CGTACAAAATTAAC-TCTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTT-AAAAAACTAATGTTCACACATTCTGAATGTCTGAGGCTGTCACTT
gi|6 : gTTTTT-GAAAA----------CAGAA-------GTAGATAT-ATAATGGAAATTTATTATCGTTGAGAAGGAA-A-GATACT-GACATTGTGGTCAGAAGTTC-------------TACCAGACCGACTCAT------TTTTCACTGG----------AAATGTCTGGACGGTCCGACGTA-TTCGCAAACACT
gi|7 : tTTTATTTTTTGAAAAA---------CAGAA-------GTAG-T--TATAATGGAAATTTATTATCGTTGAGAAGGAA-A-G-TACTGGACATT-TGGTCAGAAGTTC-------------TACCAGACCGACTCAT------TTTTCACTGG----------AAATG-CT-GACGGTCCGACGTTATTCGCAAACACaa
gi|8 : gTGTGTCGCTGAGATTGATTTTTAATGT-ACAGGACAT-T-GGTCTGGTAAAAC--TGTCAAAACTTACCAGACTT-AAA-TAATTTTACTGGACCGAAATTTTAAA-CATACAAAATTCACTTCTT-GGCACTT-GC-GTTTT
gi|9 : gTGTGTCGCTG-GAATGATTTTTAATT--ACAG-ACATCTTGGTCTGGT-AAAC--TGTCAAACTT-ACCAGACTTTAAAGTATTTTT---GGACCGAAAAATTTAAACATACAAAATTCACTTCTTGGGCACTTGGCTGTT
blockSeqs : C TGA TT C C A AA G T A A T T TT G GG A A AA G T C T A AG G . CA . . . . C TC T AA A T CA A A C TG T A CATGTATAC G GA T CA A AA A A G AGCC G GATGG T A C A ATTTC TT AAAAAACAAA AAAACCA A T ATT G T TA G G TAAAACTG CAAAAA ACTTCACCGA GT G T
blockSeqs : C TG TT . C . . G . G . C A TT . A . A . . . . . . T T TC T A . G GG A CG C TG G G . AGCC A AACAA T T C T . T A . . G ATT G . GA G . TACAA . . CC . T
blockSeqs : . . T . T . . A . G . C C TT . T . . . . . A CA C CA A G . AGCC T . . . . . T A . . T AT . . C A . TACAA . . AT . T
blockSeqs : . . T . . A . G . C C T . G . T . C CG A A . . G . . . . . T . . G G . TTCAA . . GT . T
blockSeqs : . . . . A . . . . A AA G . . . . . G . . . . . GT . A
blockSeqs : . . . . A . . . . . . . G . .
blockSeqCons : TT *** AGCC AT* GT
originalCons : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC-G-ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAATTTATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
finalCons : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC---ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAAT-TATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
Alignments
lowQualScore : 1 222 11 222 111 333333333 3333333 1 22222 11 2222 444444444 22 11111 1 3333333333 2222222 2 111 11111111 111111 2222222222
lowQualScore : 5 666 66 6 3 5 77 2 5 1 6 3 1 11 8 99 0 7 7 0 88 2 1 1 1 1 22 2 111 666 888888888 2222222 5 77777 1 22 7 88 7 7 9999 7 1 1 44 3 3 000000000 2 77 1 44 0 1 11 1 5 5 7777 3 22222 3 0 2 3 88888 88 2222222222 6666666 8 0 5 0 88 88 0 6 222 3 5 33333333 666666 0 5555555555 66 5 1
lowQualScore : . ... .. . . . .. . . . . . . .. . .. . . . . .. . . . . . .. . ... ... ......... ....... . ..... . .. . .. . . .... . . . .. . . ......... . .. . .. . . .. . . . .... . ..... . . . . ..... .. .......... ....... . . . . .. .. . . ... . . ........ ...... . .......... .. . .
lowQualScore : 0 000 44 7 7 7 99 3 7 0 7 2 4 66 0 00 8 3 3 7 55 5 0 0 0 0 00 5 000 000 000000000 5555555 5 55555 0 00 3 33 3 3 3333 3 0 0 33 2 2 000000000 5 55 4 66 8 0 77 4 7 7 0000 7 22222 2 8 5 5 00000 88 8888888888 0000000 0 8 6 8 88 88 0 7 888 7 7 00000000 444444 7 0000000000 66 7 7
consensus : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACCGGACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAA-TT-ATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
Reference ( family-5743 ) : TGTGTCGCTG-GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CATACAAAATTCACTTCTT-GGCACTT-NCTGTTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCACACATTCTGAACGTCTGAGGCTGTCACTTGCAACGCGATGCCCTTTACTNACTGTTTCCTTGTTCTCTTACANAATCAATTCTAGANTGANCTGNNCTGGACACGAACTTGCAGTATCTTGCGTATGACATTTTCCTTCCTCTTGAAAGTTTCCGTACCAGATGAAAAATGTGTTCTAAAAANANNAGGATCGGTTCTCCTTCCAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTGGCTCCAATTTTCTCAACCTTCGCA--AAAGAATGGCTTGGGTCACNGATTTCCNACGGGGAATCACACCTTTAGTATAC---------ATTAGTTACAGAATACC--ACTCATAATCCCCGCCAGAAATATGGTACTGGCCCTCCGGGCATGCGCGTCAATAATTTTT-GGTAGCCCAATCCCGACTGTACTAGCCACTGTCATTGGGTTACCGACGGAAATTTACTTNATCGACTAAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAAA-TT-ATTATCGTCGAGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGGACCGACTCAT------TTTTCACCGG----------AAATGTCC-GACGGTCCGACGTATTTCGCACACACTG
gi|1 : -GAATGATTTTTAATTTTACAGGACAT-TCGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCAGACCGAAATTTCTAT-CATA--AAATTTACT-CTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTTAAGAAA-TTAATGCTCACACATTCTGAATGTCTAAGGCTGTCACTTGC--CGTTATGCCCTTTACTGACTGTTTTCTTGTTCTCTTATAGAATCAATTCTAGAATAATTTGCTTTGGACACGAACTTGCAGTATCTTGAGTATGACATTTTCCTTTCTCTTGAAAGTTTCCATACCAGATGAAAAATATATTTTAAAAAAAAAAGGATCGGTTCTCCTTCCAAGCATGATCGTATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATTTAGCTCCAATTTTCTCAACCTTCGTATTAAAGAATGGCTTGGGTCACCGATTTCCAACAGGGAATCACACCTTTAGTACAC---------ATTAGTTACAGAATACCAGACTTATAACCCCTGCTGGAAATATGGTACTGGCCTTCCAGGCATGCGCATCAATAATTTTT-GGTAGCCCAATCCCGACTATACTAGCTACTGTCATTGGGTTACCAATGGAAATGTACTTCATCGACTAAAATTCTTATTTTTACCTTGCTTGTATTTCAAGCCAGACATTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAAAGG-AA-TT-ATTATTGTC-AGAAGAAA-A-A-TACCAGACATT-TGGTCAGAATCCCTACAA---AATTTTACTGGACCGACACAT------TTTTCACCGG----------AAAT---------GTCCGACGTATTTCGCACACACTG
gi|10 : tgtgtacGGCAT-TCGGTCTGGT-AAAC--TGTCAAGCAATCCCAGACCA-ACTGTAATTTTACCAGACCAAAATTTTTAG-CATTTAAAATTTA-TTCTT-TGCAATT-AATGTTTTTAAATACCGTCAATAAAGg
gi|11 : CATT-TGGTCAGAAGTTCTACAA---AATTTTACTGGACCGACCCAT------TTTTCACCGGACTTCACCGAAAATGTCC-GACGGTCCGACGTATTTCGCACACACTcaagattagt
gi|12 : AATACC--ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCAT-------------------CAATCCCGACTGTACTAGCCACTTTCATTGGGTCATC
gi|13 : AAAAAA-A-C-TGCCGGACATT-TTGACCGA-----TAAAACTGAATTTTATCG----GACTCATCAAAAATCTT---CGG----------GGATCCCC-GATGGTCCGGCGCGTTTCG
gi|14 : aTTTCAAATACTCTCATTAAAGGTTAAAAAAACTAATGCTCAAACATTCTAAACATCTGAGGCTGTCACTTATAATGCGATGCCCTTTACT
gi|15 : TGTTACTAGCACACTGGGCATGCAAGTCAATAATTTTTGGGTAGCC
gi|16 : atggtcagtcaatagaacTGTGT-GC---AAATAAATTTTAATTTTAATGGACAT-TCGGTCTGGT-AATC--AGTTAAGCTATACCAGACCA-AAGGTAGTacggtcataggactac
gi|17 : gTCCGGT-AAATAATTTTAA--TTTACCAAACCA-AAAGTAATATTACCAGACC-AAACTTTTAA-
gi|18 : TGCGCATCGATGACTTTT-GGTAGCCCAATCCCGACTATACTAG
gi|19 : CACACTTTTAGTATAC---------ATTAGTTACAGAATGCCGAACTCAT
gi|2 : GGATCGGTTCTCCTTCAAAGCATGATCGCATTTTCTTTGAAGCC--TTTTCTCCATACTTTGATCTGGCTCCAATTTTTTCAACCTTCGCA--A--GAATGGCTTGGGTCACAGATTTCCCATGGAGAATCACACCTTTAGTATACCATGTATACATTAGCTACAGAATACCGGACTCATAAACCCCGCCAGAAATATGGTACTGGCCCTCCAGTCATGCACATCAATGATTTTT-GGTAGCCCAATCCC------------CACTGTCGTTGGGTTACCGATGGAAATT-ACTTAAT-----AAAATTCTTATTTCTACCTTGCTTGTATTTCAAGCCAGACCTTTTTATTTTT-GAAAAA---------CGGAA-------GTAG-TATTATAATGGAA--TT-ATTATCGTC-AGAAGAAA-A-G-TACCGGACATT-TGGTCAGAAGTTCTACAA---AATTTTACCGAACCGACTCAT------TTTTCACCGG----------AAATATCC-GACGGTCCGACGTATTTCGCACA
gi|3 : TTACTATTTCCTTGTTCTCTTACACAATCAATTCTAAATTGAACTGAGCTGGACAGAAACTTACAAT---TTGCA-ATGA---------TCCTC-------TTTCTGTACCAGATG-AAAATGTGTTC-----ACATCAGGCCCAGCTCTCCTGCCAAACATACTGACATTTTTT---AAACCAATTTGCTTCCT-CTCAGTGTTGGC------TTTCTCTACCTCTG----AAAGGGTGGGTTATTTCAGTAAGGCCCTATCAGGAACCACATCC----TAT----------------TTATA-----------TCATAATCTC--TCAGTAA-ATGTTACTGGTCCACCGGGCATGCACGTCAATAATTTTT-GGT------ATCCCGATTTTACTAGCCACAGTCATCAGGCTACC-------ACTTACTT--TCGA
gi|4 : tAATACC--ACTCATATTCCCCACCAAAAATATGGTACTGGCCATCAAGGCATGCGCATCAAT-------------------CCCGACTGTACTAGCCACTTTCATTGGGTCATCAACAAAAATTTTCTGTATCGTCTGAAATTCTT-----------GCTAGTATTTGAAGCCAAACATTTTTATTTT--GAAAAAAAAAACAAACAAAAAAAACCAGTAG-TATGATAATGGAAA-T--ACTATAGTC-AGAAAAAATATA-TACCAGGCATT-TGGTCTGAAGTTCTTCAA---AATTTTACTGGACTGACTCAT------TTTTAAATGG----------AAATGTTC-GATTGTCCAGCATATTTCGCACACTCTGagactgcag
gi|5 : TGTGT-GC---GAATGATTTTTAATTTTACAGGACAT-TTGGTCTGGT-AAAC--TGTCAAACTTTACCAGACCA-AAAGTAATTTTACCGGACCGAAATTTTTAA-CGTACAAAATTAAC-TCTT-GGCACTT-TCTGTTTTCAAATACTCTCATTAAAGGTT-AAAAAACTAATGTTCACACATTCTGAATGTCTGAGGCTGTCACTT
gi|6 : gTTTTT-GAAAA----------CAGAA-------GTAGATAT-ATAATGGAAATTT-ATTATCGTTGAGAAGGAA-A-GATACT-GACATTGTGGTCAGAAGTTC-------------TACCAGACCGACTCAT------TTTTCACTGG----------AAATGTCTGGACGGTCCGACGTA-TTCGCAAACACT
gi|7 : tTTTATTTTTTGAAAAA---------CAGAA-------GTAG-T--TATAATGGAAA-TTTATTATCGTTGAGAAGGAA-A-G-TACTGGACATT-TGGTCAGAAGTTC-------------TACCAGACCGACTCAT------TTTTCACTGG----------AAATG-CT-GACGGTCCGACGTTATTCGCAAACACaa
gi|8 : gTGTGTCGCTGAGATTGATTTTTAATGT-ACAGGACAT-T-GGTCTGGTAAAAC--TGTCAAAACTTACCAGACTT-AAA-TAATTTTACTGGACCGAAATTTTAAA-CATACAAAATTCACTTCTT-GGCACTT-GC-GTTTT
gi|9 : gTGTGTCGCTG-GAATGATTTTTAATT--ACAG-ACATCTTGGTCTGGT-AAAC--TGTCAAACTT-ACCAGACTTTAAAGTATTTTT---GGACCGAAAAATTTAAACATACAAAATTCACTTCTTGGGCACTTGGCTGTT