lowQualScore : 333333 11 2222222222222222222222222222222222222 22222 11 11 111 11111 1 2222 11111 1111111 111 111 11111 11111 77777777777777777 11111 1111 11 111 1 1111
lowQualScore : 666666 2 2 33 66666 2 33 99 2 5 22 2 2 0 2 9999999999999999999999999999999999999 2 777 22222 3 3 00 00 1 5 3 2 2 33 33 4 2 999 11 33 222 00000 33 2 2 0 2 2 0 3333 66666 0 0 22222 33 0000000 33 2 2 2 444 5 33 7777777 2 444 2 11111 33 777 33 11111 2 2 66666 2 66666666666666666 2 88888 2 5555 22 1 2 2 222 8 3 0 0 33 2 444 2 11 0000 0 2 44 555 6666 2 3 5
lowQualScore : ...... . . .. ..... . .. .. . . .. . . . . ..................................... . ... ..... . . .. .. . . . . . .. .. . . ... .. .. ... ..... .. . . . . . . .... ..... . . ..... .. ....... .. . . . ... . .. ....... . ... . ..... .. ... .. ..... . . ..... . ................. . ..... . .... .. . . . ... . . . . .. . ... . .. .... . . .. ... .... . . .
lowQualScore : 111111 7 5 44 22222 5 44 22 5 0 44 7 7 5 7 3333333333333333333333333333333333333 9 999 88888 1 1 99 44 2 7 2 9 9 99 99 9 9 555 11 99 444 99999 88 5 9 9 9 9 9 6666 66666 1 1 66666 77 7777777 77 7 7 4 333 3 99 6666666 9 999 9 22222 99 999 99 11111 7 7 77777 7 99999999999999999 7 11111 7 2222 77 1 7 7 111 1 8 2 8 77 7 777 9 11 0000 7 9 66 000 2222 9 1 3
consensus : GGACTCC--G-GGTATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCA--TTCCGTTGT-AT-CCGTCA-TCA-CAA-TTTT-GAAA-TT--------CACA----AT-T---TT--T-CCCCCA-AT---GAAATC-G---G-T-TTTCTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TGAAGTT-ACA-TGAGG-ACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTA-AATGAACTATTGT---TAGGAGTG-TTAGGAGACACCTGTGTCG--TAC------CG--TT-AT-CTACCTGATAA-AGT-CCTGT--G-CG----A-TCAACC--ATG-TAG-CG-AG--C---ACGCC--TCG---TTATA-TCCGAG-GACGC-----TT-TCTGTA-G------A---GG-GGTTTNAA-TATT-ACCT-CGTTGTAAGC-GAAATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TA-TCTCGT
Reference ( gi|5 ) : GGACTCC--G-T-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCA--TTCCGTTGT-AT-CCATCA-TCA-CAA-TTTT-CAAA-CT--------CACT----AT-T---TC--C-CCCCCA-AT---GAAATC-C---G-T-TTTCTTTTGTGTGAAGCCATT-GTTGAAAGTGAAGGC-A-T--TGGTG--TGAAATT-ACA-CAAGA-ACTA--T-G-AA-A-C-AACTCAATTT-GTGATTTTCAAGTT-AATTA-AATGACCTATTGT---TAGGAGTG-TTCGGAGACACCTGTGTCG--TAC------TG--TT-AT-CTACCTGATTA-AGT-CCTGT--G-CG----A-TCAACC--TTG-TAA-TG-AG--C---ATGCC--TTG---TTATA-TCCGAG-GACGC-----TT-TC-----G------A---GG-GGTTTCGA-TATT-ACCT-TGTTGTAAGG-GAAATCTCGCTGT-A-AT-TGATCTTGTTGTAACAGGAGTATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TA-TCTTGT
gi|7 : GGACTCC--G-T-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCA--TTCCGTTGT-AT-CCATCA-TCA-CAA-TTTTTCAAA-CT--------CACT----AT-T---TC--C-CCCCCA-AT---GAAATC-C---G-T-TTTCTTTTGTGTGAAGCCATTTGTTGAAAGTGAAGGC-A-T--TGGTG--TGAAATTTACA-CAAGA-ACTA--T-G-AA-A-C-AACTCAATTTTGTGATTTTCAAGTT-AATTA-AATGACCTATTGT---TAGGAGTG-TTCGGAGACACCTGTGTCG--TAC------TG--TT-AT-CTACCTGATTA-AGT-CCTGT--G-CG----A-TCAACC--TTG-T-A-TG-AG--C---ATGCC--TTG---TTATA-TCCGAG-GACGC-----TT-TC-----G------A---GG-GGTTTCGA-TATT-ACCT-TGTTGTAAGG-AAAATCTCGCTGT-A-AT-TGATCTTGTTGTAACA-GAGTATTTCT-ATAGGAA---ATT-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGC-G-TATTCTT
gi|4 : GGACTCC--G-GGTATAAAGAGGAGGATGGGGAATGA-AAAA-T--ATCTCGTTG-----TA-ACCGTCA--TT-CATTGT-AT-CCGTCA-TCA-C---TTTT-C
gi|18 : gtGGACTCCA-G-G-TATAACGAGGTTGATGGGGAATGA-AAAT-T--ATCTCGTTA-----TA-ACCGTCA--TT-TGTTGT-AT-TCGTCA-TCA-AAA-GTTT-ccattgaaatcagggagggggggggggggggggtgggttgaatgaaattattgttgaaagtgaagacattggtgtgaagttacatgaggactatgaaaacaactcaatttgcgatctttaagataatgaaatgaacttttgttaggagacacctgtgttgtaccattatctacctgataaagtcctgtgcaatcaaccatgtagcaagcatgtctcgtttcggagaacgctttctgtagaagggttttaaatattacctcattgtaagtgaaatctcgctgtaaccgatctcgttgtaacaggaatatttctatgagaaatataaaggaaattggcctggacacaatttttttctcgttaaatgcggtatctcattatatctgagctcattatacccaaa
gi|2 : agtGACTCC--G-GGTATAACGAGTTGGATGGGGAATGA-AAAA-T--ATCTCGATA-----TA-ACTGTCA--TTC-GTTGT-AT-CTGCCA-TCA-CAA-TTTT-GAAA-TT--------CCCA----AT-TAA-TT--T-TTCCCA-AT---GAAATTGCATGG-T-TTTCTTTTGCATGAAGCCATC-GTTGAAAGTAAAGAC-A-T--TGGTG--TGAAGTT-ACA-CGAGG-ACAA--T-G-AA-AAC-AACCCAGTTT-GCGATT-----------TTG-AA---------GT-----GGACT---TTGGAGAC---TGTGTCG--TAC------CG--TT-AT-CTACCTGATAA-AGT-CCTGT--G-CG----A-TCAACC--ATG-TAG-CG-AG--C---ACGCC--TCG---TTATA-TCCGAG-GACGTTATAATT-TCTGTAGA------A---GG-GATTTATA-TATT-ACCT-CGTTGTAAGC-GAAATCTCTTTGT-A-AC-CGATCTTGTTGTAACAGGAATATTTCTAACAGAAATACATA-A---AGGAAATTG-GCCAGGAC----ACA-AATA-TTTTCTT---G-T--TATATGCGG-TA-TCTTGTga
gi|1 : agttGACTCCA-G-G-TATAATAAGATGGATGGG-AACGA-AAAAAT--ATCCTGTTA-----TAGACCGTTT--CTTCGTTGT----CCGTCA-TCA-CAAATTTT-GAAA-TTT-------CACG----AC-TAAATT--T-CCCCCATGT---GAAATC-----G-T-TTTTCTTTGCGTGAG--CAAT-GTTGAAAGTGTAAAC-AAT--TGTGG--TGAAGTT-ACT-CAAGG-ACCA--T-A-AA-AAC-AA-TCAATT--GTAATTTTTAAGTTTAATAA-AATGACTAATTGTGGTTAGGAGTG-TTAGGTGAGACCTGTGTTG--TAC------CG--TT-AT-CTA-CTGATAACAGTGCCTGCTAG-CG----A-TCAACCATTTGTTAG-CA-AG--C---AAGCT--CCGACCCTATA-TCTGAG-GACGC-----TT-TTGTA--G------A---AG-GGTTT-AA-TATA-ACCTCTG-TGTAAAGCGAAATCTCG-----------------ATTGTAACA-GAATATTTCTGATA-CAAT--AAA-A---AGGAAATTG-TCCGGGACAA--ACATAATTGTTTTCTC---G----TATATGCAG-TA-TCTCGTtatatccgagctcattatacccgaagcccactg
gi|3 : tGACTCCTGG-C-TATAGCATGGTGGGTTGG-AATTA-AAAA-TTAATCTCGTTA-----TA--TCGT----TTCATTTGT-TTGCTGTCA-TAA-CAA-TTTT-GAAA-TT--------CACA----AT-T---TT--T-CCCCCA-AT---GAAATC-G---GTT-TTTCTTTTGCATGAAGCCATTGGTTGGAAGTG-AGAC-A-T--T-GTC--TG-AATC-TTA-TGAG--ACTA--T-GAAA-A-CAAACTCAGTTT-GACATTTT-AA--T-ACTTC-AAAGAA--A--GT---T-----TG-TTAGTAGA-ACCTGT-TTT--TAC------TG--TT-AT-CTACA-GATAA-AGT-CCTGT--G-CGCTTCA-TCATCA--TT--CAG-TGTAG--CAGGACGCC--TCT---TTATA-TCCAAG-GACGC-----TTCTCTGTA-G------A---AG-G---TCA------------TG-TGTAA---GAATTCTCGCTGTAA-AC-CAATC---TCGTGAC-GGA-TATTTTTAATTCAAA---ATA-ATGTAGGAAA-TG-GCCA-GAC----ACC-AATT-TTTTTTCTCGG-C--TA-ATGTGG-tacatactgagctcattatatctcgaagccactg
gi|17 : tGACTCT--G-GGTATAACGAGGTGGATGGGGAATGA-AAAA-T--ACCTCGTTA-----TA-ACCGCCA--T-------------------TCA-CAA-TTGT-GAAA-TT--------TACA----ATCT---TC--T-TTCCCA-AT---TAActggaatcttccttgtatccgagcttcgttatcgctgaagcactcg
gi|9 : agctACTCC--G-GGTGTAACAAGGTGGATGGGAAACAA-AAAA-T--ATCTCGTTA-----TA--CCGTC----TTCGTTGTTATTCCATCA-TCA-CAA-TTTT-------T--------GGCT-------------------TCCA-AA---AAAATA-C---G-T-------------GAAGCCATT-GTTGAATGTGAAGACCG-T--TGGTG--TGAAGTT-ACC-TGAGG-ACTA--T-A-AACA-C-AAATCATTTT-GCAATTTTAAAG-T-AATTA-AATAAACTATTGT---TCGGAATG-TTAGGAGACACCCGTGTCG--CAC------CG--AT-AC-ATA-------------CCTGT--A-TG----A-TCAACC--ATG-TAAGCG-AG--C---ACACC--TCG---TTATA-TCCGAG-GACGC-----TT-TTTGTAGA------A---GG-AATTGAAA-TATT-ACCT-CTTTGTAAGC-GAAATCTCGCTGT-A-AC-TGATCTCGTT---ACAGGAATATATCTACTAGAAAT--ATG-A---AGGAAATTG-GCTGGGAC----ACA-ATTT-TTTTCTC---G-T--TATATGCGG-TA-TCTCGT
gi|14 : ACTCC--GGC-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----TA-ACCGTTA--TTCT-TTGT-AT-TCGTAA-TT--CAT-TTTT-TCTA-CTTCATTCAACATTTCAAAT-T---TT--G-TTTCCA-TT---GAAATC-G---C-T-TCTCTCTTGCGTGAA-------------AATGAA--C-T-T--TAGTG--TGAATTC-ACA-TGAGG-ACTA--TCA-AA-A-T-AACTCGATTT-GCAATTTTTAAGCT-AATTA-AATGAACTTTTGT---TAGGAGTG-TTAGAAAAAACCTGTGTCG--CAC------CG--TT-AT-CTACCTGATT----------------G----A-TCAACC--ATC-TAG-CG-AG--C---ATGCC--TCG---TTATA-TCCGAT-GGTGC-----TT-TCTGTA-G------A---AGCGGTTTAAG-TATT-ACCT-CGTTGTTAGT-GAAATCTCGCTGT-A-AC-CGATATCG--------------TTTCTAATAGAAAT--ATAGA---AGGGAtatactcgaa
gi|11 : taACTCCA-G-G-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----CA-ACCGTCA--TTC-GTTGT-AT-C------------A-------AGA-TT--------CACA----AT-T---TC--C-CCCCCA-AT---GAAATC-G---G-C-TTTCTTTTGCATGAAGTCATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TGAAGTT-ACA-TGAGG-ACTT--TGG-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTA-AATGAAC--TTGT--------GT--TTAGGAGACTCCTTTGTTG--TAC------CA--TT-AT-CTTCCTGATAA-AGA-CCT
gi|6 : CTCC--G-GGTATAGCGAGGTAGATGGGGAATGA-AAAA-T--ATCTCGTTAATATATA-ACCGTCA--TTCGGTTGT-AT-CCATCA-CCA-CAA-TTTT-GAAA-TT--------CACA----AT-T---TT--TGTTTCCA-AT---GAAATC-----G-C-TTT-TTTTGCGTGAAGCAATT-GTTGAAAGTGAAGAC-A-C--TGGTG--TGAAGTT-ACA-TGAG-------------------GACTCAGTTT-GCGATTTTTAAGTT----------------TTGT---TA----------AGAGACACCTGTGTCG--TAC------CG--TT-------CCTG--TA-CAT--CTAT--G-T----------ACC---GG-TAG-TA-AGCAC---ATAACGATCG---TTCTA-TCCGAA-GACGC-----TT-TCT----GTACATTA---GG-AGTTTAAA-TATT-ACTT-CATTGTAAGC-AAAATCTTGCCGT-C-AC-CGTTCTCGTTGTAACAGGAATATTTCTAATAGATGT--ATA-A---AGGAAATTG-GCTGGGAC----ACA-AATT-TTTTCTT---G-TTATATATGTGG-TA-TCTaaggacgctttctgtagaaggggttcaatattacctctttgtaagcgaaatctcactgtaactgatctcattataacaggaatatttctaatagaaatataaaggaaattggccaggacacaatttttttcttgttatatgcagtatctcgttatatccgagctcgttataccaaaagtccact
gi|12 : -TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-GCCGTCA--TTT-GTTGT-AC-CCGACA-TCA-CGA-TTTT-GAAA-TT--------CACA----AT-T---TTTTC-CCACCA-AT---GAAATC-G---G-C-TTTCTTTTGCATGAAGCCATT-GTTGAAATTGAAGAC-A-T--TGGTG--TGAAGTT-ACA-TGAGG-ATTA--T-GAAA-A-C-AACTCAATTC-ACGATTTT-AAGTT-GATTA-AATCAACTTTTGA---TAGGAGTG-TTAGGAGACACCTGTGTCA--TAC------CG--TT-AT-TTACCTG-TT---GT-CTTGT--G-CA----A-TCAACC--ATG-T------AG--C---ATGCC--TCG---TTATA-TCCAAT-GACGC-----TT-TCTGCA-G------A---TG-GGTTTC------------------------AAAGCCTCAATAT-A-AC-CAATCTCGTTGTAATAG---------------AAAT--ATA-T---AGGAAATTG-ACCGTGAC----ACA-AA-T-ATTTCTC---G-C--TATATGTGG-TA-TCTAGTcattatatccgagctcatcatacttgaagcccact
gi|10 : a-TATAACGAGGTGGATGGGGAATG--AAAA-T--ATATCGTTA-----TA-GCCGTCA--TT-TGTTGT-AC-CCG-CACTCA-CGA-TTTT-GAAA-TT--------CACA----AT-T---TT--T-TCCACA-ATG--GAAATC-G---G-C-TTTC--TTGCGTGAAGCCATT-GTTGAAATTGAAGAC-A-TGGTGGTGGATGCAAGT-ACA-TGGAA-ATTA--T-GAAA-A-CAAACTCAATTA-CCGATTT---AGTT-GATTA-AATCAACTTTTGA---TAGGAGTGATTAGGAGACACCTGTGTCA--TAC------CG--TTCAT-TTACCTG-TT---GT-CTTGT--G-CA----A-TCAACC-------AG-T--AG--C---ATGCC--TCG---TTATATTCCAAT-GACGC-----TT-TCTGCA-G------A---TG-GGTTTCAA-----------------------AAGCCTCAATAT-ATAC-CAATCTCGTTGTAATG--------------AGAAAT--ATA-T---AGGAAATTGAACCGTGAC----AC--AATA-TATTCTC---G-C--TATAT-TGG-TA-TCTAGTtaaatccgaagcccag
gi|20 : gaATAACAAGGTGGATAGAGAATGA-AAAA-T--ATCTCGATT-----TA-GCCATCA--TT-TGTTGT-AT-CCtaaatccgaagcccag
gi|8 : agttgaatctggggATGAGGTGGATGGGGAATAAGAAAA-T--ATCTTGTTT-----AA-ACCGTCATTTTTCATTGT-AT--CATTA-ATATCGG-TTTT-------------------T----GT-T---T------------------------T---G-T-TT--TTTTGCATGAAGCCATT-GTTGAAAGTGAAGGC-G-T--TGGTG--TAAAGTT-ACA-TGAGG-ACTA--T-GAAA-A-C-AACTCAATTT-CTAATGTTTAAGTT-AATTA-AACGAACTATTGT---TAGGACTG-TTAGGAGACACTTGTGTCG--CAC------CG--TT-AT-CTACCCGATAA-AGT-CCTGT--G-CA----A-TCAACC--ATG-TAA-CG-AA--C---ATGCC--TCG---TTAAA-TCCGAG-GACGC-----TT-TC-----T------G---TG-GA----AA-TATT-ACCT-CGGTGTAAGC-GAAATCTCGCTGT-A-AC-CGATCTCATTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCTGGGAC----A-A--------TTCTC---G-T--TATATGCGG-TA-TCTCGTgcc
gi|13 : AAA-T--ATCTCGTTA-----TA-ACCGTCA--TTC-GTTGT-AT-CCATCA-TCA-CCA-TTTT-GAAAATT--------CACA----AT-T---TT--TGCTTCCA-AT---GAAATC-G---C-T-TTTCCTTTG--------CAT-----------GAAGGC-A-T--TG-T---TGAAA----------------G--T-G-AA-G----AC---ATTT-GTG----TGAAGTT-A--TACGAGGAC-TATGGA---AATAACTA-ATAGGAGACACCTGTGTCG--TAC------CG--GT-AT-CTACCTGATAA-AGT-CCTGT--G-CG----A-TCACCA--TTG-TTA-TG-AG------ACGCC--TCGA--ATCTA--CCGAGAGACGC-----TT-TCTGTAAG------AAG-GA-GGTT---A-AATT-A--------GTA--G-CAAACTTTGCTGT-A-ACGCAGTCT--TTGT-ACAGAACTA-TTCTA--AGGGAT--ATA-A---AGCAAATT--GCCA-GAC----A-A-AACA-GTTTATC----------TATGTGGCTA-TTTCtatatccgagctcgttcgtttatgcggaccgaaaagcccact
gi|15 : CCA-ATTGTAAAATC-----G-TCTTTACTTTGCATTGAACCACT-GTTGGAAGTGAGAAC-A-T----ATG--TGGG--T-ACAGTAATAGACTAATT-G-AA---C-AA-TCAATT--GCGATTTTAGAAT--GATTA-TATGA------G-----AAGAGC--TTTG------CCTAAGTCGCGTAG------CGGATC-ATACTATCTGATAG-AGTTCCTGT--GACA----ACTCCGCA--TTG-TA---G-AG--TG--ACACC--TCAA--CTATA-TCCAAG-GTTGC-----TT-TTTTGT-G------AAATGG-GGTTTAAA--ATTGACCT-T-CAGCGAGC-GAA-TCTCACTGT-A-AC-TAATCTCATTGGAACAAGATTGGTTCTAATTGActtataatccaaggctcttctacctcaagccactgg
gi|4 : TTGAATGAAATTATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TGAAGTT-ACA-TGAGG-ACTA--T-G-AA-AAC-AACTCAATTT-GCGATCTTTAAGAT-AATGA-AATGAACTTTTGT---TAGGAG----------ACACCTGTGTTG--TAC------CA--TT-AT-CTACCTGATAA-AGT-CCTGT--G-CA----A-TCAACC--ATG-TAG-CA-AG--C---ATGTC--TCG---TT----TCGGAG-AACGC-----TT-TCTGTA-G------A---AG-GGTTTTAAATATT-ACCT-CATTGTAAGT-GAAATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTATGAGAAAT--ATA-A---AGGAAATTG-GCCTGGAC----ACA-ATTT-TTTTCTC---G-T--TAAATGCGG-TA-TCT
gi|16 : gtggactccgggtataaagaggaggatggggaatgaaaaatatctcgttgtaaccgtcattcattgtatccgtcatcacttttcccattgaaatcagggagggggggggggggggggtgggGAGATAACTGTATCG--TACCTTTAATG--TT-AT-CTACATGAGAA-AAT-GTTGT--T-------A-TTAACC--ATG-TAG-CG-AG--T---ACGCC--TAT---TTATA-ACTGAG-AACAC-----TT-TCTGTGGA------A---GG-GATTTAAA-TATT-ACCT-CGTTGTAAGC-AAAACCTCA------------------TTGTAACAAGAACATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GACAGAAC--------AATT-TTTTCTC---A-T--TATATGCGT-TA-CCTCGTcattatatctgagctcattatacccaaa
gi|11 : A-CCTAAG-GACGC-----TT-TCTGTA-G------A---AG-GGGTTCAA-TATT-ACCT-CTTTGTAAGC-GAAATCTCACTGT-A-AC-TGATCTCATTATAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-ATTT-TTTTCTT---G-T--TATATGCAG-TA-TCTCGTtatacccgaag
gi|19 : actccaggtataacgaggtggatggggaatgaaaaatatcttgttacaaccgtcattcgttgtatcaagattcacaatttcccccccaatgaaatcggctttcttttgcatgaagtcattgttgaaagtgaagacattggtgtgaagttacatgaggactttggaaacaactcaatttgcgatttttaagttaattaaatgaacttgtgtttaggagactcctttgttgtaccattatcttcctgataaag--ATA-A---AGGAATTTG-GCTGGGACAAAAAAA-AAT-------TC---GAT--TATA-GCGG-TA-CCTCGTtatatccgagctcgttataccaaaagtccact
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): GGTGCATGAGGGATTCGGTTGTATTCCGGTATCTCGTTATACCCGAAGCCCACTGTAA
Alignments
lowQualScore : 2222 11111111111111 111 111 11111111
lowQualScore : 2 2 2 33 55555 2 0000 2 2 33 2 0 2 5555 33333333333333 2 5 2 888 000 33 2 777 999999 555 0 0 5 2 2 33 33 2 2 2 2 33 999 000 5 22 1 33 444 44444444 1 2 33 777777 33 2 2 666 5 33 33 88888888 5555 88 2 2 2 00 1 0 33 33 666 2 2 2 66666 2 2 99999 444 2 33 5 44 2 0 6666 2 2 444 2 2 2 33 11 6 0 1 0 33 2 444 2 3 9999 2 33 444 5555 2
lowQualScore : . . . .. ..... . .... . . .. . . . .... .............. . . . ... ... .. . ... ...... ... . . . . . .. .. . . . . .. ... ... . .. . .. ... ........ . . .. ...... .. . . ... . .. .. ........ .... .. . . . .. . . .. .. ... . . . ..... . . ..... ... . .. . .. . . .... . . ... . . . .. .. . . . . .. . ... . . .... . .. ... .... .
lowQualScore : 5 5 4 22 99999 4 2222 4 4 99 5 5 5 3333 66666666666666 7 7 9 999 111 77 7 333 666666 000 1 5 3 7 7 77 77 7 7 7 7 77 999 888 3 99 3 55 777 99999999 1 7 44 222222 44 5 5 999 0 44 44 44444444 3333 44 5 5 5 55 9 1 44 44 999 5 5 5 22222 5 5 55555 777 5 33 2 11 5 4 2222 5 4 444 5 5 5 44 11 1 5 6 2 44 5 444 7 7 3333 7 77 777 2222 7
consensus : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TG-AAGTT-ACA-CGA-GGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTTAAA-TATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CG--ATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
Reference ( family-5737 ) : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TG-AAGTT-ACA-TGA-GGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTTNAA-TATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CG--ATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
gi|1 : GACTCCAGG-TATAATAAGATGGATGGG-AACGA-AAAAAT--ATCCTGTTA-----TAGACCGTTTCTT--CGTTGT----CCGTCA-TCACAAATT----TT------------G-AAA-TTTCACGAC-TAAATTT--CCCC--CATGT---GAAATCG----T-TTTT---CTTT-GCGTGAG--CAAT-GTTGAAAGTGTAAAC-AAT--TGTGG--TG-AAGTT-ACT-CAA-GGACCA--T-A-AA-AAC-AA-TCAATT--GTAATTTTTAAGTTTAATAAAATGACTAATTGTGGTTAGGAGTG-TTAGGTGAGACCTGTGTTG--TACC------G--TT-AT-CTA-CTGATAACAGTGCCT--GCTAGCG-------ATCAAC----CATTT-GTTA-GCAAGCAAGC--T--CCGACCCTATA-T-CTGAG-GACGC-----TT-T-T-GTA---G-A--AG-GG-TTT-AA-TATA-ACCTCTG-TGTAAAGCGA---AATCTCG-------------------ATTGTAACA-GAATATTTCTGATA-CAAT--AAA-A---AGGAAATTG-TCCGGGACAA--ACATAATTGTTTTCTC---G----TATATGCAG-TATCTCGT
gi|10 : tGA-TATAACGAGGTGGATGGGGAATGA-AAA--T--ATATCGTTA-----TA-GCCGTCATTT---GTTGT-AC-CCG-CACTCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCA--CA-ATG--GAAATCG----G-CTTT---C--TTGCGTGAAGCCATT-GTTGAAATTGAAGAC-A-TGGTGGTGGATGCAAG-T-ACA-TGG-AAATTA--T-GAAA-A-CAAACTCAATTA-CCGATTT---AGTT-GATTAAATCA---ACTTTTGATAGGAGTGATTAGGAGACACCTGTGTCA--TACC------G--TTCAT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA----G-T-----AGCATGC--C--TCG---TTATATT-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTTCAA------------------AAGC--------CTCAATAT-ATAC-CA--ATCTCGTTGTAATG--------------AGAAAT--ATA-T---AGGAAATTGAACCGTGAC----AC--AATA-TATTCTC---G-C--TATAT-TGG-TATCTAGTtacatactgagctcattatatctcgaagccactg
gi|11 : ACTCCAGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----CA-ACCGTCATTC---GTTGT-AT-C---------------------------------A-AGA-TT-CACAAT-T---TCC--CCCC--CA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGTCATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TG-AAGTT-ACA-TGA-GGACTT--TGG-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---AC--TTGT-----GT--TTAGGAGACTCCTTTGTTG--TACC------A--TT-AT-CTTCCTGATAA-AGA-CCTAAGG--ACG-------CTT--T----C---T-G-TA-GAAGG---GG--T--TCA-----ATA-T-T------AC-C-----TC-TTT-GTA-----A--GC-G-----AAA-TCTC-AC------TGT-AACTG-----ATCTCATTAT-A-AC-AGGAATAT--TTCTAATAGAAATA-----------------TA-A---AGGAAATTG-GCCAGGAC----ACA-ATTT-TTTTCTT---G-T--TATATGCAG-TATCTCGTtaaatccgaagcccag
gi|12 : -TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-GCCGTCATTT---GTTGT-AC-CCGACA-TCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCCACCA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGCCATT-GTTGAAATTGAAGAC-A-T--TGGTG--TG-AAGTT-ACA-TGA-GGATTA--T-GAAA-A-C-AACTCAATTC-ACGA-TTTTAAGTT-GATTAAATCA---ACTTTTGATAGGAGTG-TTAGGAGACACCTGTGTCA--TACC------G--TT-AT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA--T-G-T-----AGCATGC--C--TCG---TTATA-T-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTTCA-------------------AAGC--------CTCAATAT-A-AC-CA--ATCTCGTTG---------------TAATAGAAAT--ATA-T---AGGAAATTG-ACCGTGAC----ACA-AA-T-ATTTCTC---G-C--TATATGTGG-TATCTAGTtatatccgagctcgttataccaaaagtccact
gi|13 : aAAA-T--ATCTCGTTA-----TA-ACCGTCATTC---GTTGT-AT-CCATCA-TCACCA-TT----TT------------G-AAAATT-CACAAT-T---TTTG-CTTC--CA-AT---GAAATCG----C-TTTT---CCTTTGCATGA-------------------AGGC-A-T--TGTTG---A-AAGT-------GA-AGAC---------------------ATTT-GTG----TGAAGTT-A--TACGAGG---ACTATGGAAATAACTA-ATAGGAGACACCTGTGTCG--TACC------G--GT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATC-AC----CAT-T-G-TT-ATGAG-ACGC--C--TCG----AATC-TACCGAGAGACGC-----TT-TCT-GTAAG-A-A--GG-AG-GTTAA---ATT-A----GT------AGC-A---AACTTTGCTGT-A-ACGCA--GTCT--TTGT-ACAGAACTA-TTCTA--AGGGAT--ATA-A---AGCAAATT--GCC-AGAC----A-A-AACA-GTTTATC----------TATGTGGCTATTTCGtaaatccgaagcccag
gi|14 : ACTCCGGC-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----TA-ACCGTTATTC--T-TTGT-AT-TCGTAA-TT-CAT-TT----TTTCTACTTCATTCA-ACA-TTTCA-AAT-T---TTG--TTTC--CA-TT---GAAATCG----C-TTCT---CTCTTGCGTGAA-------------AATGAA--C-T-T--TAGTG--TG-AATTC-ACA-TGA-GGACTA--TCA-AA-A-T-AACTCGATTT-GCAATTTTTAAGCT-AATTAAATGA---ACTTTTGTTAGGAGTG-TTAGAAAAAACCTGTGTCG--CACC------G--TT-AT-CTACCTGAT-----------------TG-------ATCAAC----CA--T-C-TA-GCGAGCATGC--C--TCG---TTATA-T-CCGAT-GGTGC-----TT-TCT-GTA---G-A--AGCGG-TTTAAG-TATT-ACCTCGT-TGT-TAGTGA---AATCTCGCTGT-A-AC-CG--ATATCG--------------TTTCTAATAGAAAT--ATAGA---AGGGActtataatccaaggctcttctacctcaagccactgg
gi|15 : taC--CA-ATTGTAAAATCG----T-CTTT---ACTTTGCATTGAACCACT-GTTGGAAGTGAGAAC-A-T----ATG--TG---GGT-ACAGTAATAGACTAATT-G-AA---C-AA-TCAATT--GCGATTTTAGAAT--GATTATATGA---G--------AAGAGCT-TTG-------CCTAAGTCGCGTAGC------GGATC-ATACTATCTGATAG-AGTTCCT--GT--G---------A-CAACTCCGCA--TTG-TA-GAGTG-ACAC--C--TCAA--CTATA-T-CCAAG-GTTGC-----TT-TTTTGTG---A-AATGG-GG-TTTAAA--ATTGACCT------T-CAGCGAGCGAATCTCACTGT-A-AC-TA--ATCTCATTGGAACAAGATTGGTTCTAATTGA
gi|16 : GAGATAACTGTATCG--TACCTTTAATG--TT-AT-CTACATGAGAA-AAT-GTT--GT--T---------ATTAAC----CA--T-G-TA-GCGAGTACGC--C--TAT---TTATA-A-CTGAG-AACAC-----TT-TCT-GTG---GAA--GG-GA-TTTAAA-TATT-ACCTCGT-TGT-AAGCAA---A--------------------ACCTCATTGTAACAAGAACATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GACAGAAC--------AATT-TTTTCTC---A-T--TATATGCGT-TACCTCGT
gi|16 : CTTCGGG-TATAACGAGGTtatacccgaag
gi|17 : gagataactgtatcgtacctttaatgttatctacatgagaaaatgttgttattaaccatgtagcgagtacgcctatttataactgagaacactttctgtggaagggatttaaatattacctcgttgtaagcaaaacctcattgtaacaagaacatttctaatagaaatataaaggaaattggacagaacaattttttctcattatatgcgttGACTCTGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ACCTCGTTA-----TA-ACCGCCAT---------------------TCACAA-TT----GT------------G-AAA-TT-TACAATCT---TCT--TTCC--CA-AT---TAA
gi|18 : agctGGACTCCAGG-TATAACGAGGTTGATGGGGAATGA-AAAT-T--ATCTCGTTA-----TA-ACCGTCATT---TGTTGT-AT-TCGTCA-TCAAAA-GT----TT------------G-A
gi|19 : agt--ATA-A---AGGAATTTG-GCTGGGACAAAAAAA-AAT-------TC---GAT--TATA-GCGG-TACCTCGT
gi|2 : GACTCCGGG-TATAACGAGTTGGATGGGGAATGA-AAAA-T--ATCTCGATA-----TA-ACTGTCATTC---GTTGT-AT-CTGCCA-TCACAA-TT----TT------------G-AAA-TT-CCCAAT-TAA-TTT--TTCC--CA-AT---GAAATTGCATGG-TTTT---CTTTTGCATGAAGCCATC-GTTGAAAGTAAAGAC-A-T--TGGTG--TG-AAGTT-ACA-CGA-GGACAA--T-G-AA-AAC-AACCCAGTTT-GCGATTTTGAAGT----------GG---ACT--------------TT-GGAGAC---TGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGTTATAATT-TCT-GTA---GAA--GG-GA-TTTATA-TATT-ACCTCGT-TGT-AAGCGA---AATCTCTTTGT-A-AC-CG--ATCTTGTTGTAACAGGAATATTTCTAACAGAAATACATA-A---AGGAAATTG-GCCAGGAC----ACA-AATA-TTTTCTT---G-T--TATATGCGG-TATCTTGTatagatctgagcattgaatataaccgaaccaactgt
gi|20 : agttGAATCTGGG-GATAACAAGGTGGATAGAGAATGA-AAAA-T--ATCTCGATT-----TA-GCCATCATT---TGTTGT-AT-CCGCCtatatccgagctcattatacccgaagcccactg
gi|3 : agttGACTCCTGGCTATAGCATGGTGGGTTGG-AATTA-AAAA-TTAATCTCGTTA-----TA--TCGT--TTC--ATTTGT-TTGCTGTCA-TAACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----GTTTTT---CTTTTGCATGAAGCCATTGGTTGGAAGTG-AGAC-A-T--T-GTC--TG-AATCT--TA-TGA--GACTA--T-GAAA-A-CAAACTCAGTTT-GACA-TTTTAA--T-ACTTCAAAGA---A--A--GTT-----TG-TTAGTAGA-ACCTGT-TTT--TACT------G--TT-AT-CTACA-GATAA-AGT-CCT--GT--GCGCTTCATCATCATT----CAG-T-G-TA-GC-AGGACGC--C--TCT---TTATA-T-CCAAG-GACGC-----TTCTCT-GTA---G-A--AG-G-----------------TCATGTGT-AA--GA---ATTCTCGCTGTAA-AC-CA--ATCTC---GTGAC--GGATATTTTTAATTCAAA---ATA-ATGTAGGAAA-TG-GCC-AGAC----ACC-AATT-TTTTTTCTCGG-C--TA-ATGTGG-
gi|4 : tGGACTCCGGG-TATAAAGAGGAGGATGGGGAATGA-AAAA-T--ATCTCGTTG-----TA-ACCGTCATT---CATTGT-AT-CCGTCA-TCACTT-TTCCCATT------------G-AAA-Tctggaatcttccttgtatccgagcttcgttatcgctgaagcactcg
gi|4 : gtTTGAATGAAATTATT-GTTGAAAGTGAAGAC-A-T--TGGTG--TG-AAGTT-ACA-TGA-GGACTA--T-G-AA-AAC-AACTCAATTT-GCGATCTTTAAGAT-AATGAAATGA---ACT----TT-----TG-TTAGGAGACACCTGTGTTG--TACC------A--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-GCAAGCATGT--C--TCG---TT----T-CGGAG-AACGC-----TT-TCT-GTA---G-A--AG-GG-TTTTAAATATT-ACCTCAT-TGT-AAGTGA---AATCTCGCTGT-A-AC-CG--ATCTCGTTGTAACAGGAATATTTCTATGAGAAAT--ATA-A---AGGAAATTG-GCCTGGAC----ACA-ATTT-TTTTCTC---G-T--TAAATGCGG-TATCTCATcagggagggggggggggggggggtgggttgaatgaaattattgttgaaagtgaagacattggtgtgaagttacatgaggactatgaaaacaactcaatttgcgatctttaagataatgaaatgaacttttgttaggagacacctgtgttgtaccattatctacctgataaagtcctgtgcaatcaaccatgtagcaagcatgtctcgtttcggagaacgctttctgtagaagggttttaaatattacctcattgtaagtgaaatctcgctgtaaccgatctcgttgtaacaggaatatttctatgagaaatataaaggaaattggcctggacacaatttttttctcgttaaatgcggtatctcattatatctgagctcattatacccaaa
gi|5 : gtggactccgggtataaagaggaggatggggaatgaaaaatatctcgttgtaaccgtcattcattgtatccgtcatcacttttcccattgaaatcagggagggggggggggggggggtgggGGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCATCA-TCACAA-TT----TT------------C-AAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATT-GTTGAAAGTGAAGGC-A-T--TGGTG--TG-AAATT-ACA-CAA-GAACTA--T-G-AA-A-C-AACTCAATTT-GTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA-ATGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTTCGA-TATT-ACCTTGT-TGT-AAGGGA---AATCTCGCTGT-A-AT-TG--ATCTTGTTGTAACAGGAGTATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTTGTtatatctgagctcattatacccaaa
gi|6 : CTCCGGG-TATAGCGAGGTAGATGGGGAATGA-AAAA-T--ATCTCGTTAATATATA-ACCGTCATTC--GGTTGT-AT-CCATCA-CCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTTG-TTTC--CA-AT---GAAATCG----C-TTTT-----TTTGCGTGAAGCAATT-GTTGAAAGTGAAGAC-A-C--TGGTG--TG-AAGTT-ACA-TGA-GG------------------ACTCAGTTT-GCGATTTTTAAGTT---T------------------------TG-TTAAGAGACACCTGTGTCG--TACC------G--TT-------CCTG-TAC-A---TCT--AT--GT------------AC----CG----G-TA-GTAAGCACATAACGATCG---TTCTA-T-CCGAA-GACGC-----TT-TCT-GTACATT-A--GG-AG-TTTAAA-TATT-ACTTCAT-TGT-AAGCAA---AATCTTGCCGT-C-AC-CG--TTCTCGTTGTAACAGGAATATTTCTAATAGATGT--ATA-A---AGGAAATTG-GCTGGGAC----ACA-AATT-TTTTCTT---G-TTATATATGTGG-TATCTCAT
gi|7 : GGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCATCA-TCACAA-TT----TT------------TCAAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATTTGTTGAAAGTGAAGGC-A-T--TGGTG--TG-AAATTTACA-CAA-GAACTA--T-G-AA-A-C-AACTCAATTTTGTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA--TGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTTCGA-TATT-ACCTTGT-TGT-AAGGAA---AATCTCGCTGT-A-AT-TG--ATCTTGTTGTAACA-GAGTATTTCT-ATAGGAA---ATT-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGC-G-TATtatatccgagctcatcatacttgaagcccact
gi|8 : ATGAGGTGGATGGGGAATAAGAAAA-T--ATCTTGTTT-----AA-ACCGTCATTTTTCATTGT-AT-----CA-TTA--A-T-----------------------A-T----CGGT-T---TTT---------------------------G-TTTTGTTTTTTTGCATGAAGCCATT-GTTGAAAGTGAAGGC-G-T--TGGTG--TA-AAGTT-ACA-TGA-GGACTA--T-G-AA-AAC-AACTCAATTT-CTAATGTTTAAGTT-AATTAAACGA---ACTATTGTTAGGACTG-TTAGGAGACACTTGTGTCG--CACC------G--TT-AT-CTACCCGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-ACGAACATGC--C--TCG---TTAAA-T-CCGAG-GACGC-----TT-TCT-GTG---G-A------------AA-TATT-ACCTCGG-TGT-AAGCGA---AATCTCGCTGT-A-AC-CG--ATCTCATTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCTGGGAC----A-A--------TTCTC---G-T--TATATGCGG-TATCTCGTtctt
gi|9 : ACTCCGGG-TGTAACAAGGTGGATGGGAAACAA-AAAA-T--ATCTCGTTA-----TA--CCGTC--TT--CGTTGTTAT-TC--CA-TCA-------------------------------T-CACAAT-T---TTTGGCTTC--CA-AA---AAAAT--------------------ACGTGAAGCCATT-GTTGAATGTGAAGACCG-T--TGGTG--TG-AAGTT-ACC-TGA-GGACTA--T-A-AACA-C-AAATCATTTT-GCAATTTTAAAGT--AATTAAATAA---ACTATTGTTCGGAATG-TTAGGAGACACCCGTGTCG--CACC------G-----AT---AC---ATA------CCT--GT--ATG-------ATCAAC----CA--T-G-TAAGCGAGCACAC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TTT-GTA---G-A--AG-GAATTGAAA-TATT-ACCTCTT-TGT-AAGCGA---AATCTCGCTGT-A-AC-TG--ATCTCGTT---ACAGGAATATATCTACTAGAAAT--ATG-A---AGGAAATTG-GCTGGGAC----ACA-ATTT-TTTTCTC---G-T--TATATGCGG-TATCTCGTtatatccgagctcgttcgtttatgcggaccgaaaagcccact
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GGTGCATGAGGGATTCGGTTGTATTCCGGTATCTCGTTATACCCGAAGCCCACTGTAA
Alignments
lowQualScore : 2222 11111111111111 111 111 11111111
lowQualScore : 2 2 2 33 55555 2 0000 2 2 33 2 0 2 5555 33333333333333 2 5 2 888 000 33 2 777 999999 555 0 0 5 2 2 888 33 2 2 4 33 999 000 5 22 1 33 444 44444444 1 2 33 777777 33 2 2 666 5 33 33 88888888 5555 88 2 2 2 00 1 0 33 33 666 2 2 2 66666 2 2 99999 33 2 33 33 1 2 2222 2 1 444 0 2 2 2 0 0 6 0 33 2 444 2 3 9999 2 33 444 5555 2
lowQualScore : . . . .. ..... . .... . . .. . . . .... .............. . . . ... ... .. . ... ...... ... . . . . . ... .. . . . .. ... ... . .. . .. ... ........ . . .. ...... .. . . ... . .. .. ........ .... .. . . . .. . . .. .. ... . . . ..... . . ..... .. . .. .. . . .... . . ... . . . . . . . . .. . ... . . .... . .. ... .... .
lowQualScore : 5 5 4 22 99999 4 2222 4 4 99 5 5 5 3333 66666666666666 7 7 9 999 111 77 7 333 666666 000 1 5 3 7 7 333 77 7 7 6 77 999 888 3 99 3 55 777 99999999 1 7 44 222222 44 5 5 999 0 44 44 44444444 3333 44 5 5 5 55 9 1 44 44 999 5 5 5 22222 5 5 55555 44 5 33 33 0 4 6666 4 6 111 2 4 4 4 6 4 1 5 44 5 444 7 7 3333 7 77 777 2222 7
consensus : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
Reference ( family-5737 ) : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
gi|1 : GACTCCAGG-TATAATAAGATGGATGGG-AACGA-AAAAAT--ATCCTGTTA-----TAGACCGTTTCTT--CGTTGT----CCGTCA-TCACAAATT----TT------------G-AAA-TTTCACGAC-TAAATTT--CCCC--CATGT---GAAATCG----T-TTTT---CTTT-GCGTGAG--CAAT-GTTGAAAGTGTAAAC-AAT---TGTGG--TG-AAGTT-ACTCAAGGACCA--T-A-AA-AAC-AA-TCAATT--GTAATTTTTAAGTTTAATAAAATGACTAATTGTGGTTAGGAGTG-TTAGGTGAGACCTGTGTTG--TACC------G--TT-AT-CTA-CTGATAACAGTGCCT--GCTAGCG-------ATCAAC----CATTT-GTTA-GCAAGCAAGC--T--CCGACCCTATA-T-CTGAG-GACGC-----TT-T-T-GTA---G-A--AG-GG-TTT--AATATA-ACCTCTG-TGTAAAGCGA---AATCTCG-----------------ATTGTAACA-GAATATTTCTGATA-CAAT--AAA-A---AGGAAATTG-TCCGGGACAA--ACATAATTGTTTTCTC---G----TATATGCAG-TATCTCGT
gi|10 : tGA-TATAACGAGGTGGATGGGGAATGA-AAA--T--ATATCGTTA-----TA-GCCGTCATTT---GTTGT-AC-CCG-CACTCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCA--CA-ATG--GAAATCG----G-CTTT---C--TTGCGTGAAGCCATT-GTTGAAATTGAAGAC-A-TGG-TGGTGGATGCAAG-T-ACATGGAAATTA--T-GAAA-A-CAAACTCAATTA-CCGATTT---AGTT-GATTAAATCA---ACTTTTGATAGGAGTGATTAGGAGACACCTGTGTCA--TACC------G--TTCAT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA----G-T-----AGCATGC--C--TCG---TTATATT-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTT-CAA-----------------AAGC--------CTCAATAT-ATAC-CAATCTCGTTGTAATG--------------AGAAAT--ATA-T---AGGAAATTGAACCGTGAC----AC--AATA-TATTCTC---G-C--TATAT-TGG-TATCTAGTtacatactgagctcattatatctcgaagccactg
gi|11 : ACTCCAGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----CA-ACCGTCATTC---GTTGT-AT-C---------------------------------A-AGA-TT-CACAAT-T---TCC--CCCC--CA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGTCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGACTT--TGG-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---AC--TTGT-----GT--TTAGGAGACTCCTTTGTTG--TACC------A--TT-AT-CTTCCTGATAA-AGA-CCTAAGG--ACG-------CTT--T----C---T-G-TA-GAAGG---GG--T--TCA-----ATA-T-T------AC-C-----TC-TTT-GTA-----A--GC-G------AAAT------CTCAC-TGT-AACTG-----ATCTCATTAT-A-AC----------------AGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-ATTT-TTTTCTT---G-T--TATATGCAG-TATCTCGTtaaatccgaagcccag
gi|12 : -TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-GCCGTCATTT---GTTGT-AC-CCGACA-TCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCCACCA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGCCATT-GTTGAAATTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGATTA--T-GAAA-A-C-AACTCAATTC-ACGA-TTTTAAGTT-GATTAAATCA---ACTTTTGATAGGAGTG-TTAGGAGACACCTGTGTCA--TACC------G--TT-AT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA--T-G-T-----AGCATGC--C--TCG---TTATA-T-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTT-CA------------------AAGC--------CTCAATAT-A-AC-CAATCTCGTTG---------------TAATAGAAAT--ATA-T---AGGAAATTG-ACCGTGAC----ACA-AA-T-ATTTCTC---G-C--TATATGTGG-TATCTAGTtatatccgagctcgttataccaaaagtccact
gi|13 : aAAA-T--ATCTCGTTA-----TA-ACCGTCATTC---GTTGT-AT-CCATCA-TCACCA-TT----TT------------G-AAAATT-CACAAT-T---TTTG-CTTC--CA-AT---GAAATCG----C-TTTT---CCTTTGCATGA-------------------AGGC-A-T---TGTTG---A-AAGT------GAAGAC---------------------ATTT-GTG----TGAAGTT-A--TACGAGG---ACTATGGAAATAACTA-ATAGGAGACACCTGTGTCG--TACC------G--GT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATC-AC----CAT-T-G-TT-ATGAG-ACGC--C--TCG----AATC-TACCGAGAGACGC-----TT-TCT-GTAAG-A-A--GG-AG-GTT-AA--ATT-A----GT------AGC-A---AACTTTGCTGT-A-ACGCAGTCT--TTGT-ACAGAACTA-TTCTA--AGGGAT--ATA-A---AGCAAATT--GCC-AGAC----A-A-AACA-GTTTATC----------TATGTGGCTATTTCGtaaatccgaagcccag
gi|14 : ACTCCGGC-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----TA-ACCGTTATTC--T-TTGT-AT-TCGTAA-TT-CAT-TT----TTTCTACTTCATTCA-ACA-TTTCA-AAT-T---TTG--TTTC--CA-TT---GAAATCG----C-TTCT---CTCTTGCGTGAA-------------AATGAA--C-T-T---TAGTG--TG-AATTC-ACATGAGGACTA--TCA-AA-A-T-AACTCGATTT-GCAATTTTTAAGCT-AATTAAATGA---ACTTTTGTTAGGAGTG-TTAGAAAAAACCTGTGTCG--CACC------G--TT-AT-CTACCTGAT-----------------TG-------ATCAAC----CA--T-C-TA-GCGAGCATGC--C--TCG---TTATA-T-CCGAT-GGTGC-----TT-TCT-GTA---G-A--AGCGG-TTT-AAGTATT-ACCTCGT-TGT-TAGTGA---AATCTCGCTGT-A-AC-CGATATCG--------------TTTCTAATAGAAAT--ATAGA---AGGGActtataatccaaggctcttctacctcaagccactgg
gi|15 : taC--CA-ATTGTAAAATCG----T-CTTT---ACTTTGCATTGAACCACT-GTTGGAAGTGAGAAC-A-TATGTGG-G--TA-CAGTA-ATA----GACTAATT-G-AA---C-AA-TCAATT--GCGATTTTAGAAT--GATTATATGA---G--------AAGAGCT-TTG-------CCTAAGTCGCGTAGC------GGATC-ATACTATCTGATAG-AGTTCCT--GT--G---------A-CAACTCCGCA--TTG-TA-GAGTG-ACAC--C--TCAA--CTATA-T-CCAAG-GTTGC-----TT-TTTTGTG---A-AATGG-GG-TTT-AAA-ATTGACCT------T-CAGCGAGCGAATCTCACTGT-A-AC-TAATCTCATTGGAACAAGATTGGTTCTAATTGA
gi|16 : GAGATAACTGTATCG--TACCTTTAATG--TT-AT-CTACATGAGAA-AAT-GTT--GT--T---------ATTAAC----CA--T-G-TA-GCGAGTACGC--C--TAT---TTATA-A-CTGAG-AACAC-----TT-TCT-GTG---GAA--GG-GA-TTT-AAATATT-ACCTCGT-TGT-AAGCAA---A------------------ACCTCATTGTAACAAGAACATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GACAGAAC--------AATT-TTTTCTC---A-T--TATATGCGT-TACCTCGT
gi|16 : CTTCGGG-TATAACGAGGTtatacccgaag
gi|17 : gagataactgtatcgtacctttaatgttatctacatgagaaaatgttgttattaaccatgtagcgagtacgcctatttataactgagaacactttctgtggaagggatttaaatattacctcgttgtaagcaaaacctcattgtaacaagaacatttctaatagaaatataaaggaaattggacagaacaattttttctcattatatgcgttGACTCTGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ACCTCGTTA-----TA-ACCGCCAT---------------------TCACAA-TT----GT------------G-AAA-TT-TACAATCT---TCT--TTCC--CA-AT---TAA
gi|18 : agctGGACTCCAGG-TATAACGAGGTTGATGGGGAATGA-AAAT-T--ATCTCGTTA-----TA-ACCGTCATT---TGTTGT-AT-TCGTCA-TCAAAA-GT----TT------------G-A
gi|19 : agt--ATA-A---AGGAATTTG-GCTGGGACAAAAAAA-AAT-------TC---GAT--TATA-GCGG-TACCTCGT
gi|2 : GACTCCGGG-TATAACGAGTTGGATGGGGAATGA-AAAA-T--ATCTCGATA-----TA-ACTGTCATTC---GTTGT-AT-CTGCCA-TCACAA-TT----TT------------G-AAA-TT-CCCAAT-TAA-TTT--TTCC--CA-AT---GAAATTGCATGG-TTTT---CTTTTGCATGAAGCCATC-GTTGAAAGTAAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACAA--T-G-AA-AAC-AACCCAGTTT-GCGATTTTGAAGT----------GG---ACT--------------TT-GGAGAC---TGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGTTATAATT-TCT-GTA---GAA--GG-GA-TTT-ATATATT-ACCTCGT-TGT-AAGCGA---AATCTCTTTGT-A-AC-CGATCTTGTTGTAACAGGAATATTTCTAACAGAAATACATA-A---AGGAAATTG-GCCAGGAC----ACA-AATA-TTTTCTT---G-T--TATATGCGG-TATCTTGTatagatctgagcattgaatataaccgaaccaactgt
gi|2 : agtt-AAATATT-TTCTTGT-TAT-ATGCGG---TATCTTGTTAT-A-TC-CGAGCTCATTATAtatatccgagctcattatacccgaagcccactg
gi|20 : agttgactccgggtataacgagttggatggggaatgaaaaatatctcgatataactgtcattcgttgtatctgccatcacaattttgaaattcccaattaatttttcccaatgaaattgcatggttttcttttgcatgaagccatcgttgaaagtaaagacattggtgtgaagttacacgaggacaatgaaaacaacccagtttgcgattttgaagtggactttggagactgtgtcgtaccgttatctacctgataaagtcctgtgcgatcaaccatgtagcgagcacgcctcgttatatccgaggacgttataatttctgtagaagggatttatatattacctcgttgtaagcgaaatctctttgtaaccgatcttgttgtaacaggaatatttctaacagaaatacataaaggaaattggccaggacacGAATCTGGG-GATAACAAGGTGGATAGAGAATGA-AAAA-T--ATCTCGATT-----TA-GCCATCATT---TGTTGT-AT-CCGCCcccgaagcccactg
gi|3 : agttGACTCCTGGCTATAGCATGGTGGGTTGG-AATTA-AAAA-TTAATCTCGTTA-----TA--TCGT--TTC--ATTTGT-TTGCTGTCA-TAACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----GTTTTT---CTTTTGCATGAAGCCATTGGTTGGAAGTG-AGAC-A-T---T-GTC--TG-AATCT--TATGA-GACTA--T-GAAA-A-CAAACTCAGTTT-GACA-TTTTAA--T-ACTTCAAAGA---A--A--GTT-----TG-TTAGTAGA-ACCTGT-TTT--TACT------G--TT-AT-CTACA-GATAA-AGT-CCT--GT--GCGCTTCATCATCATT----CAG-T-G-TA-GC-AGGACGC--C--TCT---TTATA-T-CCAAG-GACGC-----TTCTCT-GTA---G-A--AG-G-----------------TCATGTGT-AA--GA---ATTCTCGCTGTAA-AC-CAATCTC---GTGAC--GGATATTTTTAATTCAAA---ATA-ATGTAGGAAA-TG-GCC-AGAC----ACC-AATT-TTTTTTCTCGG-C--TA-ATGTGG-
gi|4 : tGGACTCCGGG-TATAAAGAGGAGGATGGGGAATGA-AAAA-T--ATCTCGTTG-----TA-ACCGTCATT---CATTGT-AT-CCGTCA-TCACTT-TTCCCATT------------G-AAA-Tctggaatcttccttgtatccgagcttcgttatcgctgaagcactcg
gi|4 : gtTTGAATGAAATTATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGACTA--T-G-AA-AAC-AACTCAATTT-GCGATCTTTAAGAT-AATGAAATGA---ACT----TT-----TG-TTAGGAGACACCTGTGTTG--TACC------A--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-GCAAGCATGT--C--TCG---TT----T-CGGAG-AACGC-----TT-TCT-GTA---G-A--AG-GG-TTTTAAATATT-ACCTCAT-TGT-AAGTGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTATGAGAAAT--ATA-A---AGGAAATTG-GCCTGGAC----ACA-ATTT-TTTTCTC---G-T--TAAATGCGG-TATCTCATcagggagggggggggggggggggtgggttgaatgaaattattgttgaaagtgaagacattggtgtgaagttacatgaggactatgaaaacaactcaatttgcgatctttaagataatgaaatgaacttttgttaggagacacctgtgttgtaccattatctacctgataaagtcctgtgcaatcaaccatgtagcaagcatgtctcgtttcggagaacgctttctgtagaagggttttaaatattacctcattgtaagtgaaatctcgctgtaaccgatctcgttgtaacaggaatatttctatgagaaatataaaggaaattggcctggacacaatttttttctcgttaaatgcggtatctcattatatctgagctcattatacccaaa
gi|5 : gtggactccgggtataaagaggaggatggggaatgaaaaatatctcgttgtaaccgtcattcattgtatccgtcatcacttttcccattgaaatcagggagggggggggggggggggtgggGGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCATCA-TCACAA-TT----TT------------C-AAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATT-GTTGAAAGTGAAGGC-A-T---TGGTG--TG-AAATT-ACACAAGAACTA--T-G-AA-A-C-AACTCAATTT-GTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA-ATGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTT-CGATATT-ACCTTGT-TGT-AAGGGA---AATCTCGCTGT-A-AT-TGATCTTGTTGTAACAGGAGTATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTTGTtatatctgagctcattatacccaaa
gi|6 : CTCCGGG-TATAGCGAGGTAGATGGGGAATGA-AAAA-T--ATCTCGTTAATATATA-ACCGTCATTC--GGTTGT-AT-CCATCA-CCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTTG-TTTC--CA-AT---GAAATCG----C-TTTT-----TTTGCGTGAAGCAATT-GTTGAAAGTGAAGAC-A-C---TGGTG--TG-AAGTT-ACATGAGG------------------ACTCAGTTT-GCGATTTTTAAGTT---T------------------------TG-TTAAGAGACACCTGTGTCG--TACC------G--TT-------CCTG-TAC-A---TCT--AT--GT------------AC----CG----G-TA-GTAAGCACATAACGATCG---TTCTA-T-CCGAA-GACGC-----TT-TCT-GTACATT-A--GG-AG-TTT-AAATATT-ACTTCAT-TGT-AAGCAA---AATCTTGCCGT-C-AC-CGTTCTCGTTGTAACAGGAATATTTCTAATAGATGT--ATA-A---AGGAAATTG-GCTGGGAC----ACA-AATT-TTTTCTT---G-TTATATATGTGG-TATCTCAT
gi|7 : GGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCATCA-TCACAA-TT----TT------------TCAAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATTTGTTGAAAGTGAAGGC-A-T---TGGTG--TG-AAATTTACACAAGAACTA--T-G-AA-A-C-AACTCAATTTTGTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA--TGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTT-CGATATT-ACCTTGT-TGT-AAGGAA---AATCTCGCTGT-A-AT-TGATCTTGTTGTAACA-GAGTATTTCT-ATAGGAA---ATT-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGC-G-TATtatatccgagctcatcatacttgaagcccact
gi|8 : ATGAGGTGGATGGGGAATAAGAAAA-T--ATCTTGTTT-----AA-ACCGTCATTTTTCATTGT-AT-----CA-TTA--A-T-----------------------A-T----CGGT-T---TTT---------------------------G-TTTTGTTTTTTTGCATGAAGCCATT-GTTGAAAGTGAAGGC-G-T---TGGTG--TA-AAGTT-ACATGAGGACTA--T-G-AA-AAC-AACTCAATTT-CTAATGTTTAAGTT-AATTAAACGA---ACTATTGTTAGGACTG-TTAGGAGACACTTGTGTCG--CACC------G--TT-AT-CTACCCGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-ACGAACATGC--C--TCG---TTAAA-T-CCGAG-GACGC-----TT-TCT-GTG---G--------------AAATATT-ACCTCGG-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCATTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCTGGGAC----A-A--------TTCTC---G-T--TATATGCGG-TATCTCGTtctt
gi|9 : ACTCCGGG-TGTAACAAGGTGGATGGGAAACAA-AAAA-T--ATCTCGTTA-----TA--CCGTC--TT--CGTTGTTAT-TC--CA-TCA-------------------------------T-CACAAT-T---TTTGGCTTC--CA-AA---AAAAT--------------------ACGTGAAGCCATT-GTTGAATGTGAAGACCG-T---TGGTG--TG-AAGTT-ACCTGAGGACTA--T-A-AACA-C-AAATCATTTT-GCAATTTTAAAGT--AATTAAATAA---ACTATTGTTCGGAATG-TTAGGAGACACCCGTGTCG--CACC------G-----AT---AC---ATA------CCT--GT--ATG-------ATCAAC----CA--T-G-TAAGCGAGCACAC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TTT-GTA---G-A--AG-GAATTG-AAATATT-ACCTCTT-TGT-AAGCGA---AATCTCGCTGT-A-AC-TGATCTCGTT---ACAGGAATATATCTACTAGAAAT--ATG-A---AGGAAATTG-GCTGGGAC----ACA-ATTT-TTTTCTC---G-T--TATATGCGG-TATCTCGTtatatccgagctcgttcgtttatgcggaccgaaaagcccact
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GGTGCATGAGGGATTCGGTTGTATTCCGGTATCTCGTTATACCCGAAGCCCACTGTAA
Alignments
lowQualScore : 2222 11111111111111 111 111 11111111
lowQualScore : 2 2 2 33 55555 2 0000 2 2 33 2 0 2 5555 33333333333333 2 5 2 888 000 33 2 777 999999 555 0 0 5 2 2 888 33 2 2 4 33 999 000 5 22 1 33 444 44444444 1 2 33 777777 33 2 2 666 5 33 33 88888888 5555 88 2 2 2 00 1 0 33 33 666 2 2 2 66666 2 2 99999 33 2 33 33 1 2 2222 2 1 444 0 2 2 2 0 0 6 0 33 2 444 2 3 9999 2 33 444 5555 2
lowQualScore : . . . .. ..... . .... . . .. . . . .... .............. . . . ... ... .. . ... ...... ... . . . . . ... .. . . . .. ... ... . .. . .. ... ........ . . .. ...... .. . . ... . .. .. ........ .... .. . . . .. . . .. .. ... . . . ..... . . ..... .. . .. .. . . .... . . ... . . . . . . . . .. . ... . . .... . .. ... .... .
lowQualScore : 5 5 4 22 99999 4 2222 4 4 99 5 5 5 3333 66666666666666 7 7 9 999 111 77 7 333 666666 000 1 5 3 7 7 333 77 7 7 6 77 999 888 3 99 3 55 777 99999999 1 7 44 222222 44 5 5 999 0 44 44 44444444 3333 44 5 5 5 55 9 1 44 44 999 5 5 5 22222 5 5 55555 44 5 33 33 0 4 6666 4 6 111 2 4 4 4 6 4 1 5 44 5 444 7 7 3333 7 77 777 2222 7
consensus : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
Reference ( family-5737 ) : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
gi|1 : GACTCCAGG-TATAATAAGATGGATGGG-AACGA-AAAAAT--ATCCTGTTA-----TAGACCGTTTCTT--CGTTGT----CCGTCA-TCACAAATT----TT------------G-AAA-TTTCACGAC-TAAATTT--CCCC--CATGT---GAAATCG----T-TTTT---CTTT-GCGTGAG--CAAT-GTTGAAAGTGTAAAC-AAT---TGTGG--TG-AAGTT-ACTCAAGGACCA--T-A-AA-AAC-AA-TCAATT--GTAATTTTTAAGTTTAATAAAATGACTAATTGTGGTTAGGAGTG-TTAGGTGAGACCTGTGTTG--TACC------G--TT-AT-CTA-CTGATAACAGTGCCT--GCTAGCG-------ATCAAC----CATTT-GTTA-GCAAGCAAGC--T--CCGACCCTATA-T-CTGAG-GACGC-----TT-T-T-GTA---G-A--AG-GG-TTT--AATATA-ACCTCTG-TGTAAAGCGA---AATCTCG-----------------ATTGTAACA-GAATATTTCTGATA-CAAT--AAA-A---AGGAAATTG-TCCGGGACAA--ACATAATTGTTTTCTC---G----TATATGCAG-TATCTCGT
gi|10 : tGA-TATAACGAGGTGGATGGGGAATGA-AAA--T--ATATCGTTA-----TA-GCCGTCATTT---GTTGT-AC-CCG-CACTCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCA--CA-ATG--GAAATCG----G-CTTT---C--TTGCGTGAAGCCATT-GTTGAAATTGAAGAC-A-TGG-TGGTGGATGCAAG-T-ACATGGAAATTA--T-GAAA-A-CAAACTCAATTA-CCGATTT---AGTT-GATTAAATCA---ACTTTTGATAGGAGTGATTAGGAGACACCTGTGTCA--TACC------G--TTCAT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA----G-T-----AGCATGC--C--TCG---TTATATT-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTT-CAA-----------------AAGC--------CTCAATAT-ATAC-CAATCTCGTTGTAATG--------------AGAAAT--ATA-T---AGGAAATTGAACCGTGAC----AC--AATA-TATTCTC---G-C--TATAT-TGG-TATCTAGTtacatactgagctcattatatctcgaagccactg
gi|11 : ACTCCAGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----CA-ACCGTCATTC---GTTGT-AT-C---------------------------------A-AGA-TT-CACAAT-T---TCC--CCCC--CA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGTCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGACTT--TGG-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---AC--TTGT-----GT--TTAGGAGACTCCTTTGTTG--TACC------A--TT-AT-CTTCCTGATAA-AGA-CCTAAGG--ACG-------CTT--T----C---T-G-TA-GAAGG---GG--T--TCA-----ATA-T-T------AC-C-----TC-TTT-GTA-----A--GC-G------AAAT------CTCAC-TGT-AACTG-----ATCTCATTAT-A-AC----------------AGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-ATTT-TTTTCTT---G-T--TATATGCAG-TATCTCGTtaaatccgaagcccag
gi|12 : -TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-GCCGTCATTT---GTTGT-AC-CCGACA-TCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCCACCA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGCCATT-GTTGAAATTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGATTA--T-GAAA-A-C-AACTCAATTC-ACGA-TTTTAAGTT-GATTAAATCA---ACTTTTGATAGGAGTG-TTAGGAGACACCTGTGTCA--TACC------G--TT-AT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA--T-G-T-----AGCATGC--C--TCG---TTATA-T-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTT-CA------------------AAGC--------CTCAATAT-A-AC-CAATCTCGTTG---------------TAATAGAAAT--ATA-T---AGGAAATTG-ACCGTGAC----ACA-AA-T-ATTTCTC---G-C--TATATGTGG-TATCTAGTtatatccgagctcgttataccaaaagtccact
gi|13 : aAAA-T--ATCTCGTTA-----TA-ACCGTCATTC---GTTGT-AT-CCATCA-TCACCA-TT----TT------------G-AAAATT-CACAAT-T---TTTG-CTTC--CA-AT---GAAATCG----C-TTTT---CCTTTGCATGA-------------------AGGC-A-T---TGTTG---A-AAGT------GAAGAC---------------------ATTT-GTG----TGAAGTT-A--TACGAGG---ACTATGGAAATAACTA-ATAGGAGACACCTGTGTCG--TACC------G--GT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATC-AC----CAT-T-G-TT-ATGAG-ACGC--C--TCG----AATC-TACCGAGAGACGC-----TT-TCT-GTAAG-A-A--GG-AG-GTT-AA--ATT-A----GT------AGC-A---AACTTTGCTGT-A-ACGCAGTCT--TTGT-ACAGAACTA-TTCTA--AGGGAT--ATA-A---AGCAAATT--GCC-AGAC----A-A-AACA-GTTTATC----------TATGTGGCTATTTCGtaaatccgaagcccag
gi|14 : ACTCCGGC-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----TA-ACCGTTATTC--T-TTGT-AT-TCGTAA-TT-CAT-TT----TTTCTACTTCATTCA-ACA-TTTCA-AAT-T---TTG--TTTC--CA-TT---GAAATCG----C-TTCT---CTCTTGCGTGAA-------------AATGAA--C-T-T---TAGTG--TG-AATTC-ACATGAGGACTA--TCA-AA-A-T-AACTCGATTT-GCAATTTTTAAGCT-AATTAAATGA---ACTTTTGTTAGGAGTG-TTAGAAAAAACCTGTGTCG--CACC------G--TT-AT-CTACCTGAT-----------------TG-------ATCAAC----CA--T-C-TA-GCGAGCATGC--C--TCG---TTATA-T-CCGAT-GGTGC-----TT-TCT-GTA---G-A--AGCGG-TTT-AAGTATT-ACCTCGT-TGT-TAGTGA---AATCTCGCTGT-A-AC-CGATATCG--------------TTTCTAATAGAAAT--ATAGA---AGGGActtataatccaaggctcttctacctcaagccactgg
gi|15 : taC--CA-ATTGTAAAATCG----T-CTTT---ACTTTGCATTGAACCACT-GTTGGAAGTGAGAAC-A-TATGTGG-G--TA-CAGTA-ATA----GACTAATT-G-AA---C-AA-TCAATT--GCGATTTTAGAAT--GATTATATGA---G--------AAGAGCT-TTG-------CCTAAGTCGCGTAGC------GGATC-ATACTATCTGATAG-AGTTCCT--GT--G---------A-CAACTCCGCA--TTG-TA-GAGTG-ACAC--C--TCAA--CTATA-T-CCAAG-GTTGC-----TT-TTTTGTG---A-AATGG-GG-TTT-AAA-ATTGACCT------T-CAGCGAGCGAATCTCACTGT-A-AC-TAATCTCATTGGAACAAGATTGGTTCTAATTGA
gi|16 : GAGATAACTGTATCG--TACCTTTAATG--TT-AT-CTACATGAGAA-AAT-GTT--GT--T---------ATTAAC----CA--T-G-TA-GCGAGTACGC--C--TAT---TTATA-A-CTGAG-AACAC-----TT-TCT-GTG---GAA--GG-GA-TTT-AAATATT-ACCTCGT-TGT-AAGCAA---A------------------ACCTCATTGTAACAAGAACATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GACAGAAC--------AATT-TTTTCTC---A-T--TATATGCGT-TACCTCGT
gi|16 : CTTCGGG-TATAACGAGGTtatacccgaag
gi|17 : gagataactgtatcgtacctttaatgttatctacatgagaaaatgttgttattaaccatgtagcgagtacgcctatttataactgagaacactttctgtggaagggatttaaatattacctcgttgtaagcaaaacctcattgtaacaagaacatttctaatagaaatataaaggaaattggacagaacaattttttctcattatatgcgttGACTCTGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ACCTCGTTA-----TA-ACCGCCAT---------------------TCACAA-TT----GT------------G-AAA-TT-TACAATCT---TCT--TTCC--CA-AT---TAA
gi|18 : agctGGACTCCAGG-TATAACGAGGTTGATGGGGAATGA-AAAT-T--ATCTCGTTA-----TA-ACCGTCATT---TGTTGT-AT-TCGTCA-TCAAAA-GT----TT------------G-A
gi|19 : agt--ATA-A---AGGAATTTG-GCTGGGACAAAAAAA-AAT-------TC---GAT--TATA-GCGG-TACCTCGT
gi|2 : GACTCCGGG-TATAACGAGTTGGATGGGGAATGA-AAAA-T--ATCTCGATA-----TA-ACTGTCATTC---GTTGT-AT-CTGCCA-TCACAA-TT----TT------------G-AAA-TT-CCCAAT-TAA-TTT--TTCC--CA-AT---GAAATTGCATGG-TTTT---CTTTTGCATGAAGCCATC-GTTGAAAGTAAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACAA--T-G-AA-AAC-AACCCAGTTT-GCGATTTTGAAGT----------GG---ACT--------------TT-GGAGAC---TGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGTTATAATT-TCT-GTA---GAA--GG-GA-TTT-ATATATT-ACCTCGT-TGT-AAGCGA---AATCTCTTTGT-A-AC-CGATCTTGTTGTAACAGGAATATTTCTAACAGAAATACATA-A---AGGAAATTG-GCCAGGAC----ACA-AATA-TTTTCTT---G-T--TATATGCGG-TATCTTGTatagatctgagcattgaatataaccgaaccaactgt
gi|2 : agtt-AAATATT-TTCTTGT-TAT-ATGCGG---TATCTTGTTAT-A-TC-CGAGCTCATTATAtatatccgagctcattatacccgaagcccactg
gi|20 : agttgactccgggtataacgagttggatggggaatgaaaaatatctcgatataactgtcattcgttgtatctgccatcacaattttgaaattcccaattaatttttcccaatgaaattgcatggttttcttttgcatgaagccatcgttgaaagtaaagacattggtgtgaagttacacgaggacaatgaaaacaacccagtttgcgattttgaagtggactttggagactgtgtcgtaccgttatctacctgataaagtcctgtgcgatcaaccatgtagcgagcacgcctcgttatatccgaggacgttataatttctgtagaagggatttatatattacctcgttgtaagcgaaatctctttgtaaccgatcttgttgtaacaggaatatttctaacagaaatacataaaggaaattggccaggacacGAATCTGGG-GATAACAAGGTGGATAGAGAATGA-AAAA-T--ATCTCGATT-----TA-GCCATCATT---TGTTGT-AT-CCGCCcccgaagcccactg
gi|3 : agttGACTCCTGGCTATAGCATGGTGGGTTGG-AATTA-AAAA-TTAATCTCGTTA-----TA--TCGT--TTC--ATTTGT-TTGCTGTCA-TAACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----GTTTTT---CTTTTGCATGAAGCCATTGGTTGGAAGTG-AGAC-A-T---T-GTC--TG-AATCT--TATGA-GACTA--T-GAAA-A-CAAACTCAGTTT-GACA-TTTTAA--T-ACTTCAAAGA---A--A--GTT-----TG-TTAGTAGA-ACCTGT-TTT--TACT------G--TT-AT-CTACA-GATAA-AGT-CCT--GT--GCGCTTCATCATCATT----CAG-T-G-TA-GC-AGGACGC--C--TCT---TTATA-T-CCAAG-GACGC-----TTCTCT-GTA---G-A--AG-G-----------------TCATGTGT-AA--GA---ATTCTCGCTGTAA-AC-CAATCTC---GTGAC--GGATATTTTTAATTCAAA---ATA-ATGTAGGAAA-TG-GCC-AGAC----ACC-AATT-TTTTTTCTCGG-C--TA-ATGTGG-
gi|4 : tGGACTCCGGG-TATAAAGAGGAGGATGGGGAATGA-AAAA-T--ATCTCGTTG-----TA-ACCGTCATT---CATTGT-AT-CCGTCA-TCACTT-TTCCCATT------------G-AAA-Tctggaatcttccttgtatccgagcttcgttatcgctgaagcactcg
gi|4 : gtTTGAATGAAATTATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGACTA--T-G-AA-AAC-AACTCAATTT-GCGATCTTTAAGAT-AATGAAATGA---ACT----TT-----TG-TTAGGAGACACCTGTGTTG--TACC------A--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-GCAAGCATGT--C--TCG---TT----T-CGGAG-AACGC-----TT-TCT-GTA---G-A--AG-GG-TTTTAAATATT-ACCTCAT-TGT-AAGTGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTATGAGAAAT--ATA-A---AGGAAATTG-GCCTGGAC----ACA-ATTT-TTTTCTC---G-T--TAAATGCGG-TATCTCATcagggagggggggggggggggggtgggttgaatgaaattattgttgaaagtgaagacattggtgtgaagttacatgaggactatgaaaacaactcaatttgcgatctttaagataatgaaatgaacttttgttaggagacacctgtgttgtaccattatctacctgataaagtcctgtgcaatcaaccatgtagcaagcatgtctcgtttcggagaacgctttctgtagaagggttttaaatattacctcattgtaagtgaaatctcgctgtaaccgatctcgttgtaacaggaatatttctatgagaaatataaaggaaattggcctggacacaatttttttctcgttaaatgcggtatctcattatatctgagctcattatacccaaa
gi|5 : gtggactccgggtataaagaggaggatggggaatgaaaaatatctcgttgtaaccgtcattcattgtatccgtcatcacttttcccattgaaatcagggagggggggggggggggggtgggGGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCATCA-TCACAA-TT----TT------------C-AAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATT-GTTGAAAGTGAAGGC-A-T---TGGTG--TG-AAATT-ACACAAGAACTA--T-G-AA-A-C-AACTCAATTT-GTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA-ATGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTT-CGATATT-ACCTTGT-TGT-AAGGGA---AATCTCGCTGT-A-AT-TGATCTTGTTGTAACAGGAGTATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTTGTtatatctgagctcattatacccaaa
gi|6 : CTCCGGG-TATAGCGAGGTAGATGGGGAATGA-AAAA-T--ATCTCGTTAATATATA-ACCGTCATTC--GGTTGT-AT-CCATCA-CCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTTG-TTTC--CA-AT---GAAATCG----C-TTTT-----TTTGCGTGAAGCAATT-GTTGAAAGTGAAGAC-A-C---TGGTG--TG-AAGTT-ACATGAGG------------------ACTCAGTTT-GCGATTTTTAAGTT---T------------------------TG-TTAAGAGACACCTGTGTCG--TACC------G--TT-------CCTG-TAC-A---TCT--AT--GT------------AC----CG----G-TA-GTAAGCACATAACGATCG---TTCTA-T-CCGAA-GACGC-----TT-TCT-GTACATT-A--GG-AG-TTT-AAATATT-ACTTCAT-TGT-AAGCAA---AATCTTGCCGT-C-AC-CGTTCTCGTTGTAACAGGAATATTTCTAATAGATGT--ATA-A---AGGAAATTG-GCTGGGAC----ACA-AATT-TTTTCTT---G-TTATATATGTGG-TATCTCAT
gi|7 : GGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCATCA-TCACAA-TT----TT------------TCAAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATTTGTTGAAAGTGAAGGC-A-T---TGGTG--TG-AAATTTACACAAGAACTA--T-G-AA-A-C-AACTCAATTTTGTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA--TGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTT-CGATATT-ACCTTGT-TGT-AAGGAA---AATCTCGCTGT-A-AT-TGATCTTGTTGTAACA-GAGTATTTCT-ATAGGAA---ATT-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGC-G-TATtatatccgagctcatcatacttgaagcccact
gi|8 : ATGAGGTGGATGGGGAATAAGAAAA-T--ATCTTGTTT-----AA-ACCGTCATTTTTCATTGT-AT-----CA-TTA--A-T-----------------------A-T----CGGT-T---TTT---------------------------G-TTTTGTTTTTTTGCATGAAGCCATT-GTTGAAAGTGAAGGC-G-T---TGGTG--TA-AAGTT-ACATGAGGACTA--T-G-AA-AAC-AACTCAATTT-CTAATGTTTAAGTT-AATTAAACGA---ACTATTGTTAGGACTG-TTAGGAGACACTTGTGTCG--CACC------G--TT-AT-CTACCCGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-ACGAACATGC--C--TCG---TTAAA-T-CCGAG-GACGC-----TT-TCT-GTG---G--------------AAATATT-ACCTCGG-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCATTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCTGGGAC----A-A--------TTCTC---G-T--TATATGCGG-TATCTCGTtctt
gi|9 : ACTCCGGG-TGTAACAAGGTGGATGGGAAACAA-AAAA-T--ATCTCGTTA-----TA--CCGTC--TT--CGTTGTTAT-TC--CA-TCA-------------------------------T-CACAAT-T---TTTGGCTTC--CA-AA---AAAAT--------------------ACGTGAAGCCATT-GTTGAATGTGAAGACCG-T---TGGTG--TG-AAGTT-ACCTGAGGACTA--T-A-AACA-C-AAATCATTTT-GCAATTTTAAAGT--AATTAAATAA---ACTATTGTTCGGAATG-TTAGGAGACACCCGTGTCG--CACC------G-----AT---AC---ATA------CCT--GT--ATG-------ATCAAC----CA--T-G-TAAGCGAGCACAC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TTT-GTA---G-A--AG-GAATTG-AAATATT-ACCTCTT-TGT-AAGCGA---AATCTCGCTGT-A-AC-TGATCTCGTT---ACAGGAATATATCTACTAGAAAT--ATG-A---AGGAAATTG-GCTGGGAC----ACA-ATTT-TTTTCTC---G-T--TATATGCGG-TATCTCGTtatatccgagctcgttcgtttatgcggaccgaaaagcccact
blockSeqs : C G . TA ATATA . TTTC T G GA C . CCCA TCTACTTCATTCA A T C AA GGC AC . TGT CATGG GTT G C . ATG GA C T T AT GA AA A TT T T . TTTGATAG G A CG TTTAAT GA C A AA T AA . GCTTCATC TCCG T T . A C AA GA A T A A TATAA C T CATT AT C AA TA T G CATG . G GCG A T G G AC G TGT A G AAAA . A TCG TTA C
blockSeqs : . . . . . . CT . . AT . . . TC . . . . GC . . G GT . T . . GG . . . T . GG AA A A T T . TTTGATAG G . . . . . . AA . . . A . G . . . C . . . . . . . . . AGA . . G C T . CAC . G . . . . G . . . . A . . T . AT .
blockSeqs : . . . . . . CA . . GT . . . G . . . . GT . . . G . . . . . . . . T . GA AA . T G T . ATGGAAAT G . . . . . . AG . . . G . . . . . C . . . . . . . . . GA . . G A T . CGT . G . . . . A . . . . G . . T . C .
blockSeqs : . . . . . . CC . . GT . . . A . . . . T . . . G . . . . . . . . T . CA CA . C T T . TTTGTTAG C . . . . . . AA . . . A . . . . . T . . . . . . . . . GA . . G C T . CGT . A . . . . A . . . . A . . A . T .
blockSeqs : . . . . . . CG . . GC . . . G . . . . C . . . G . . . . . . . . C . GA A . T A T . ATTGTTAG G . . . . . . AA . . . G . . . . . C . . . . . . . . . G . . G A T . CGT . G . . . . G . . . . G . . T . C .
blockSeqs : . . . . . . CC . . GC . . . G . . . . T . . . C . . . . . . . . T . G A . T G T . ATTGTTAG G . . . . . . AA . . . G . . . . . G . . . . . . . . . G . . G A T . TGT . G . . . . G . . . . A . . A . T .
blockSeqs : . . . . . . TC . . GT . . . G . . . . T . . . C . . . . . . . . T . G A . T T T . ATTGTTAG G . . . . . . AA . . . G . . . . . C . . . . . . . . . G . . A A T . CAT . G . . . . G . . . . T . . T . T .
blockSeqs : . . . . . . T . . GT . . . G . . . . T . . . T . . . . . . . . C . G A . T T T . ATTGTTCG G . . . . . . TA . . . A . . . . . C . . . . . . . . . A . . A A T . TGT . G . . . . G . . . . A . . T . C .
blockSeqs : . . . . . . C . . AT . . . G . . . . T . . . G . . . . . . . . T . G A . T C T . TTGT C . . . . . . AC . . . G . . . . . C . . . . . . . . . G . . G A T . CAT . G . . . . G . . . . G . . T . T .
blockSeqs : . . . . . . T . . AT . . . G . . . . C . . . C . . . . . . . . C . G A . T T T . AGTT A . . . . . . TA . . . G . . . . . C . . . . . . . . . G . . G A T . TGT . A . . . . G . . . . A . . T . T .
blockSeqs : . . . . . . C . . AT . . . G . . . . C . . . G . . . . . . . . T . G A . T C T . AA . . . . . . . AA . . . A . . . . . C . . . . . . . . . G . . G C T . CGG . A . . . . . . . . . G . . T . T .
blockSeqs : . . . . . . T . . G . . . C . . . . C . . . G . . . . . . . . T . A . . T T . . TT . . . . . . . A . . . G . . . . . C . . . . . . . . . G . . G A . . CTT . G . . . . . . . . . G . . T . T .
blockSeqs : . . . . . . C . . . . . . G . . . . . . . . . . . . . . . . . . . . . . T A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . C . . GT . G . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqCons : C*** *** A** T* T* *** AA* ** ** *** A* **** T* T***
originalCons : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC--CGTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
finalCons : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGTCATTC---GTTGT-AT-CCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AAA--C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTTA-AATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---GT---TATATGCGG-TATCTCGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GGTGCATGAGGGATTCGGTTGTATTCCGGTATCTCGTTATACCCGAAGCCCACTGTAA
Alignments
lowQualScore : 11111111111111 111 111 11111111
lowQualScore : 2 2 2 33 55555 2 66 55555 2 2 33 2 0 2 5555 33333333333333 2 5 2 888 000 33 2 777 999999 555 0 0 5 2 2 888 33 2 2 4 33 999 000 5 22 1 33 444 44444444 1 2 33 777777 33 2 2 666 5 33 33 88888888 5555 88 2 2 2 00 1 0 33 33 666 2 2 2 66666 2 2 99999 33 2 33 33 1 2 2222 2 1 444 0 2 2 2 0 0 6 0 33 2 444 2 3 9999 2 33 444 5555 2
lowQualScore : . . . .. ..... . .. ..... . . .. . . . .... .............. . . . ... ... .. . ... ...... ... . . . . . ... .. . . . .. ... ... . .. . .. ... ........ . . .. ...... .. . . ... . .. .. ........ .... .. . . . .. . . .. .. ... . . . ..... . . ..... .. . .. .. . . .... . . ... . . . . . . . . .. . ... . . .... . .. ... .... .
lowQualScore : 5 5 4 22 99999 4 55 00000 4 4 99 5 5 5 3333 66666666666666 7 7 9 999 111 77 7 333 666666 000 1 5 3 7 7 333 77 7 7 6 77 999 888 3 99 3 55 777 99999999 1 7 44 222222 44 5 5 999 0 44 44 44444444 3333 44 5 5 5 55 9 1 44 44 999 5 5 5 22222 5 5 55555 44 5 33 33 0 4 6666 4 6 111 2 4 4 4 6 4 1 5 44 5 444 7 7 3333 7 77 777 2222 7
consensus : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGT--CATT---C-G-TTGT-ATCCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
Reference ( family-5737 ) : GGACTCCGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGT--CATT---C-G-TTGT-ATCCGTCA-TCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----G-TTTT---CTTTTGCGTGAAGCCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACTA--T-G-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---ACTATTGTTAGGAGTG-TTAGGAGACACCTGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TCT-GTA---G-A--GG-GG-TTT-AAATATT-ACCTCGT-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCGGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTCGT
gi|1 : GACTCCAGG-TATAATAAGATGGATGGG-AACGA-AAAAAT--ATCCTGTTA-----TAGACCGTTTC-TT---C-G-TTGT---CCGTCA-TCACAAATT----TT------------G-AAA-TTTCACGAC-TAAATTT--CCCC--CATGT---GAAATCG----T-TTTT---CTTT-GCGTGAG--CAAT-GTTGAAAGTGTAAAC-AAT---TGTGG--TG-AAGTT-ACTCAAGGACCA--T-A-AA-AAC-AA-TCAATT--GTAATTTTTAAGTTTAATAAAATGACTAATTGTGGTTAGGAGTG-TTAGGTGAGACCTGTGTTG--TACC------G--TT-AT-CTA-CTGATAACAGTGCCT--GCTAGCG-------ATCAAC----CATTT-GTTA-GCAAGCAAGC--T--CCGACCCTATA-T-CTGAG-GACGC-----TT-T-T-GTA---G-A--AG-GG-TTT--AATATA-ACCTCTG-TGTAAAGCGA---AATCTCG-----------------ATTGTAACA-GAATATTTCTGATA-CAAT--AAA-A---AGGAAATTG-TCCGGGACAA--ACATAATTGTTTTCTC---G----TATATGCAG-TATCTCGT
gi|10 : tGA-TATAACGAGGTGGATGGGGAATGA-AAA--T--ATATCGTTA-----TA-GCCGT--CATT---T-G-TTGT-ACCCG-CACTCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCA--CA-ATG--GAAATCG----G-CTTT---C--TTGCGTGAAGCCATT-GTTGAAATTGAAGAC-A-TGG-TGGTGGATGCAAG-T-ACATGGAAATTA--T-GAAA-A-CAAACTCAATTA-CCGATTT---AGTT-GATTAAATCA---ACTTTTGATAGGAGTGATTAGGAGACACCTGTGTCA--TACC------G--TTCAT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA----G-T-----AGCATGC--C--TCG---TTATATT-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTT-CAA-----------------AAGC--------CTCAATAT-ATAC-CAATCTCGTTGTAATG--------------AGAAAT--ATA-T---AGGAAATTGAACCGTGAC----AC--AATA-TATTCTC---G-C--TATAT-TGG-TATCTAGTtacatactgagctcattatatctcgaagccactg
gi|11 : ACTCCAGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----CA-ACCGT--CATT---C-G-TTGT-ATC---------------------------------A-AGA-TT-CACAAT-T---TCC--CCCC--CA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGTCATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGACTT--TGG-AA-A-C-AACTCAATTT-GCGATTTTTAAGTT-AATTAAATGA---AC--TTGT-----GT--TTAGGAGACTCCTTTGTTG--TACC------A--TT-AT-CTTCCTGATAA-AGA-CCTAAGG--ACG-------CTT--T----C---T-G-TA-GAAGG---GG--T--TCA-----ATA-T-T------AC-C-----TC-TTT-GTA-----A--GC-G------AAAT------CTCAC-TGT-AACTG-----ATCTCATTAT-A-AC----------------AGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-ATTT-TTTTCTT---G-T--TATATGCAG-TATCTCGTtaaatccgaagcccag
gi|12 : -TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-GCCGT--CATT---T-G-TTGT-ACCCGACA-TCACGA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--TCCCACCA-AT---GAAATCG----G-CTTT---CTTTTGCATGAAGCCATT-GTTGAAATTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGATTA--T-GAAA-A-C-AACTCAATTC-ACGA-TTTTAAGTT-GATTAAATCA---ACTTTTGATAGGAGTG-TTAGGAGACACCTGTGTCA--TACC------G--TT-AT-TTACCTGTT----GT-CTT--GT--GCA-------ATCAAC----CA--T-G-T-----AGCATGC--C--TCG---TTATA-T-CCAAT-GACGC-----TT-TCT-GCA---G-A--TG-GG-TTT-CA------------------AAGC--------CTCAATAT-A-AC-CAATCTCGTTG---------------TAATAGAAAT--ATA-T---AGGAAATTG-ACCGTGAC----ACA-AA-T-ATTTCTC---G-C--TATATGTGG-TATCTAGTtatatccgagctcgttataccaaaagtccact
gi|13 : aAAA-T--ATCTCGTTA-----TA-ACCGT--CATT---C-G-TTGT-ATCCATCA-TCACCA-TT----TT------------G-AAAATT-CACAAT-T---TTTG-CTTC--CA-AT---GAAATCG----C-TTTT---CCTTTGCATGA-------------------AGGC-A-T---TGTTG---A-AAGT------GAAGAC---------------------ATTT-GTG----TGAAGTT-A--TACGAGG---ACTATGGAAATAACTA-ATAGGAGACACCTGTGTCG--TACC------G--GT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATC-AC----CAT-T-G-TT-ATGAG-ACGC--C--TCG----AATC-TACCGAGAGACGC-----TT-TCT-GTAAG-A-A--GG-AG-GTT-AA--ATT-A----GT------AGC-A---AACTTTGCTGT-A-ACGCAGTCT--TTGT-ACAGAACTA-TTCTA--AGGGAT--ATA-A---AGCAAATT--GCC-AGAC----A-A-AACA-GTTTATC----------TATGTGGCTATTTCGtaaatccgaagcccag
gi|14 : ACTCCGGC-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTTGTTA-----TA-ACCGT--TATT---C-T-TTGT-ATTCGTAA-TT-CAT-TT----TTTCTACTTCATTCA-ACA-TTTCA-AAT-T---TTG--TTTC--CA-TT---GAAATCG----C-TTCT---CTCTTGCGTGAA-------------AATGAA--C-T-T---TAGTG--TG-AATTC-ACATGAGGACTA--TCA-AA-A-T-AACTCGATTT-GCAATTTTTAAGCT-AATTAAATGA---ACTTTTGTTAGGAGTG-TTAGAAAAAACCTGTGTCG--CACC------G--TT-AT-CTACCTGAT-----------------TG-------ATCAAC----CA--T-C-TA-GCGAGCATGC--C--TCG---TTATA-T-CCGAT-GGTGC-----TT-TCT-GTA---G-A--AGCGG-TTT-AAGTATT-ACCTCGT-TGT-TAGTGA---AATCTCGCTGT-A-AC-CGATATCG--------------TTTCTAATAGAAAT--ATAGA---AGGGActtataatccaaggctcttctacctcaagccactgg
gi|15 : taC--CA-ATTGTAAAATCG----T-CTTT---ACTTTGCATTGAACCACT-GTTGGAAGTGAGAAC-A-TATGTGG-G--TA-CAGTA-ATA----GACTAATT-G-AA---C-AA-TCAATT--GCGATTTTAGAAT--GATTATATGA---G--------AAGAGCT-TTG-------CCTAAGTCGCGTAGC------GGATC-ATACTATCTGATAG-AGTTCCT--GT--G---------A-CAACTCCGCA--TTG-TA-GAGTG-ACAC--C--TCAA--CTATA-T-CCAAG-GTTGC-----TT-TTTTGTG---A-AATGG-GG-TTT-AAA-ATTGACCT------T-CAGCGAGCGAATCTCACTGT-A-AC-TAATCTCATTGGAACAAGATTGGTTCTAATTGA
gi|16 : GAGATAACTGTATCG--TACCTTTAATG--TT-AT-CTACATGAGAA-AAT-GTT--GT--T---------ATTAAC----CA--T-G-TA-GCGAGTACGC--C--TAT---TTATA-A-CTGAG-AACAC-----TT-TCT-GTG---GAA--GG-GA-TTT-AAATATT-ACCTCGT-TGT-AAGCAA---A------------------ACCTCATTGTAACAAGAACATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GACAGAAC--------AATT-TTTTCTC---A-T--TATATGCGT-TACCTCGT
gi|16 : CTTCGGG-TATAACGAGGTtatacccgaag
gi|17 : gagataactgtatcgtacctttaatgttatctacatgagaaaatgttgttattaaccatgtagcgagtacgcctatttataactgagaacactttctgtggaagggatttaaatattacctcgttgtaagcaaaacctcattgtaacaagaacatttctaatagaaatataaaggaaattggacagaacaattttttctcattatatgcgttGACTCTGGG-TATAACGAGGTGGATGGGGAATGA-AAAA-T--ACCTCGTTA-----TA-ACCGC--CAT----------------------TCACAA-TT----GT------------G-AAA-TT-TACAATCT---TCT--TTCC--CA-AT---TAA
gi|18 : agctGGACTCCAGG-TATAACGAGGTTGATGGGGAATGA-AAAT-T--ATCTCGTTA-----TA-ACCGT--CATT---T-G-TTGT-ATTCGTCA-TCAAAA-GT----TT------------G-A
gi|19 : agt--ATA-A---AGGAATTTG-GCTGGGACAAAAAAA-AAT-------TC---GAT--TATA-GCGG-TACCTCGT
gi|2 : GACTCCGGG-TATAACGAGTTGGATGGGGAATGA-AAAA-T--ATCTCGATA-----TA-ACTGT--CATT---C-G-TTGT-ATCTGCCA-TCACAA-TT----TT------------G-AAA-TT-CCCAAT-TAA-TTT--TTCC--CA-AT---GAAATTGCATGG-TTTT---CTTTTGCATGAAGCCATC-GTTGAAAGTAAAGAC-A-T---TGGTG--TG-AAGTT-ACACGAGGACAA--T-G-AA-AAC-AACCCAGTTT-GCGATTTTGAAGT----------GG---ACT--------------TT-GGAGAC---TGTGTCG--TACC------G--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCG-------ATCAAC----CA--T-G-TA-GCGAGCACGC--C--TCG---TTATA-T-CCGAG-GACGTTATAATT-TCT-GTA---GAA--GG-GA-TTT-ATATATT-ACCTCGT-TGT-AAGCGA---AATCTCTTTGT-A-AC-CGATCTTGTTGTAACAGGAATATTTCTAACAGAAATACATA-A---AGGAAATTG-GCCAGGAC----ACA-AATA-TTTTCTT---G-T--TATATGCGG-TATCTTGTatagatctgagcattgaatataaccgaaccaactgt
gi|2 : agtt-AAATATT-TTCTTGT-TAT-ATGCGG---TATCTTGTTAT-A-TC-CGAGCTCATTATAtatatccgagctcattatacccgaagcccactg
gi|20 : agttgactccgggtataacgagttggatggggaatgaaaaatatctcgatataactgtcattcgttgtatctgccatcacaattttgaaattcccaattaatttttcccaatgaaattgcatggttttcttttgcatgaagccatcgttgaaagtaaagacattggtgtgaagttacacgaggacaatgaaaacaacccagtttgcgattttgaagtggactttggagactgtgtcgtaccgttatctacctgataaagtcctgtgcgatcaaccatgtagcgagcacgcctcgttatatccgaggacgttataatttctgtagaagggatttatatattacctcgttgtaagcgaaatctctttgtaaccgatcttgttgtaacaggaatatttctaacagaaatacataaaggaaattggccaggacacGAATCTGGG-GATAACAAGGTGGATAGAGAATGA-AAAA-T--ATCTCGATT-----TA-GCCAT--CATT---T-G-TTGT-ATCCGCCcccgaagcccactg
gi|3 : agttGACTCCTGGCTATAGCATGGTGGGTTGG-AATTA-AAAA-TTAATCTCGTTA-----TA--TCGTTTCATT---T-G-TT-T-G-CTGTCA-TAACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTT--CCCC--CA-AT---GAAATCG----GTTTTT---CTTTTGCATGAAGCCATTGGTTGGAAGTG-AGAC-A-T---T-GTC--TG-AATCT--TATGA-GACTA--T-GAAA-A-CAAACTCAGTTT-GACA-TTTTAA--T-ACTTCAAAGA---A--A--GTT-----TG-TTAGTAGA-ACCTGT-TTT--TACT------G--TT-AT-CTACA-GATAA-AGT-CCT--GT--GCGCTTCATCATCATT----CAG-T-G-TA-GC-AGGACGC--C--TCT---TTATA-T-CCAAG-GACGC-----TTCTCT-GTA---G-A--AG-G-----------------TCATGTGT-AA--GA---ATTCTCGCTGTAA-AC-CAATCTC---GTGAC--GGATATTTTTAATTCAAA---ATA-ATGTAGGAAA-TG-GCC-AGAC----ACC-AATT-TTTTTTCTCGG-C--TA-ATGTGG-
gi|4 : tGGACTCCGGG-TATAAAGAGGAGGATGGGGAATGA-AAAA-T--ATCTCGTTG-----TA-ACCGT--CATT---C-A-TTGT-ATCCGTCA-TCACTT-TTCCCATT------------G-AAA-Tctggaatcttccttgtatccgagcttcgttatcgctgaagcactcg
gi|4 : gtTTGAATGAAATTATT-GTTGAAAGTGAAGAC-A-T---TGGTG--TG-AAGTT-ACATGAGGACTA--T-G-AA-AAC-AACTCAATTT-GCGATCTTTAAGAT-AATGAAATGA---ACT----TT-----TG-TTAGGAGACACCTGTGTTG--TACC------A--TT-AT-CTACCTGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-GCAAGCATGT--C--TCG---TT----T-CGGAG-AACGC-----TT-TCT-GTA---G-A--AG-GG-TTTTAAATATT-ACCTCAT-TGT-AAGTGA---AATCTCGCTGT-A-AC-CGATCTCGTTGTAACAGGAATATTTCTATGAGAAAT--ATA-A---AGGAAATTG-GCCTGGAC----ACA-ATTT-TTTTCTC---G-T--TAAATGCGG-TATCTCATcagggagggggggggggggggggtgggttgaatgaaattattgttgaaagtgaagacattggtgtgaagttacatgaggactatgaaaacaactcaatttgcgatctttaagataatgaaatgaacttttgttaggagacacctgtgttgtaccattatctacctgataaagtcctgtgcaatcaaccatgtagcaagcatgtctcgtttcggagaacgctttctgtagaagggttttaaatattacctcattgtaagtgaaatctcgctgtaaccgatctcgttgtaacaggaatatttctatgagaaatataaaggaaattggcctggacacaatttttttctcgttaaatgcggtatctcattatatctgagctcattatacccaaa
gi|5 : gtggactccgggtataaagaggaggatggggaatgaaaaatatctcgttgtaaccgtcattcattgtatccgtcatcacttttcccattgaaatcagggagggggggggggggggggtgggGGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGT--CATT---CCG-TTGT-ATCCATCA-TCACAA-TT----TT------------C-AAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATT-GTTGAAAGTGAAGGC-A-T---TGGTG--TG-AAATT-ACACAAGAACTA--T-G-AA-A-C-AACTCAATTT-GTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA-ATGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTT-CGATATT-ACCTTGT-TGT-AAGGGA---AATCTCGCTGT-A-AT-TGATCTTGTTGTAACAGGAGTATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGCGG-TATCTTGTtatatctgagctcattatacccaaa
gi|6 : CTCCGGG-TATAGCGAGGTAGATGGGGAATGA-AAAA-T--ATCTCGTTAATATATA-ACCGT--CATT---C-GGTTGT-ATCCATCA-CCACAA-TT----TT------------G-AAA-TT-CACAAT-T---TTTG-TTTC--CA-AT---GAAATCG----C-TTTT-----TTTGCGTGAAGCAATT-GTTGAAAGTGAAGAC-A-C---TGGTG--TG-AAGTT-ACATGAGG------------------ACTCAGTTT-GCGATTTTTAAGTT---T------------------------TG-TTAAGAGACACCTGTGTCG--TACC------G--TT-------CCTG-TAC-A---TCT--AT--GT------------AC----CG----G-TA-GTAAGCACATAACGATCG---TTCTA-T-CCGAA-GACGC-----TT-TCT-GTACATT-A--GG-AG-TTT-AAATATT-ACTTCAT-TGT-AAGCAA---AATCTTGCCGT-C-AC-CGTTCTCGTTGTAACAGGAATATTTCTAATAGATGT--ATA-A---AGGAAATTG-GCTGGGAC----ACA-AATT-TTTTCTT---G-TTATATATGTGG-TATCTCAT
gi|7 : GGACTCCGT--TATAACGAGGTGGATGGGGAATGA-AAAA-T--ATCTCGTTA-----TA-ACCGT--CATT---CCG-TTGT-ATCCATCA-TCACAA-TT----TT------------TCAAA-CT-CACTAT-T---TCC--CCCC--CA-AT---GAAATCC----G-TTTT---CTTTTGTGTGAAGCCATTTGTTGAAAGTGAAGGC-A-T---TGGTG--TG-AAATTTACACAAGAACTA--T-G-AA-A-C-AACTCAATTTTGTGATTTTCAAGTT-AATTAAATGA---CCTATTGTTAGGAGTG-TTCGGAGACACCTGTGTCG--TACT------G--TT-AT-CTACCTGATTA-AGT-CCT--GT--GCG-------ATCAAC----CT--T-G-TA--TGAGCATGC--C--TTG---TTATA-T-CCGAG-GACGC-----TT-TC--------G-A--GG-GG-TTT-CGATATT-ACCTTGT-TGT-AAGGAA---AATCTCGCTGT-A-AT-TGATCTTGTTGTAACA-GAGTATTTCT-ATAGGAA---ATT-A---AGGAAATTG-GCCAGGAC----ACA-AATT-TTTTCTC---G-T--TATATGC-G-TATtatatccgagctcatcatacttgaagcccact
gi|8 : ATGAGGTGGATGGGGAATAAGAAAA-T--ATCTTGTTT-----AA-ACCGT--CATTTTTC-A-TTGT-AT----CA-TTA--A-T-----------------------A-T----CGGT-T---TTT---------------------------G-TTTTGTTTTTTTGCATGAAGCCATT-GTTGAAAGTGAAGGC-G-T---TGGTG--TA-AAGTT-ACATGAGGACTA--T-G-AA-AAC-AACTCAATTT-CTAATGTTTAAGTT-AATTAAACGA---ACTATTGTTAGGACTG-TTAGGAGACACTTGTGTCG--CACC------G--TT-AT-CTACCCGATAA-AGT-CCT--GT--GCA-------ATCAAC----CA--T-G-TA-ACGAACATGC--C--TCG---TTAAA-T-CCGAG-GACGC-----TT-TCT-GTG---G--------------AAATATT-ACCTCGG-TGT-AAGCGA---AATCTCGCTGT-A-AC-CGATCTCATTGTAACAGGAATATTTCTAATAGAAAT--ATA-A---AGGAAATTG-GCTGGGAC----A-A--------TTCTC---G-T--TATATGCGG-TATCTCGTtctt
gi|9 : ACTCCGGG-TGTAACAAGGTGGATGGGAAACAA-AAAA-T--ATCTCGTTA-----TA--CCGT--C-TT---C-G-TTGTTATTC--CA-TCA-------------------------------T-CACAAT-T---TTTGGCTTC--CA-AA---AAAAT--------------------ACGTGAAGCCATT-GTTGAATGTGAAGACCG-T---TGGTG--TG-AAGTT-ACCTGAGGACTA--T-A-AACA-C-AAATCATTTT-GCAATTTTAAAGT--AATTAAATAA---ACTATTGTTCGGAATG-TTAGGAGACACCCGTGTCG--CACC------G-----AT---AC---ATA------CCT--GT--ATG-------ATCAAC----CA--T-G-TAAGCGAGCACAC--C--TCG---TTATA-T-CCGAG-GACGC-----TT-TTT-GTA---G-A--AG-GAATTG-AAATATT-ACCTCTT-TGT-AAGCGA---AATCTCGCTGT-A-AC-TGATCTCGTT---ACAGGAATATATCTACTAGAAAT--ATG-A---AGGAAATTG-GCTGGGAC----ACA-ATTT-TTTTCTC---G-T--TATATGCGG-TATCTCGTtatatccgagctcgttcgtttatgcggaccgaaaagcccact
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GGTGCATGAGGGATTCGGTTGTATTCCGGTATCTCGTTATACCCGAAGCCCACTGTAA