lowQualScore : 111111111111111111111
lowQualScore : 444444444444444444444
lowQualScore : 1 77 1 555 1 333 44444 2 888888888888888888888 2 55555 44444 333 1 555 1 1 1
lowQualScore : . .. . ... . ... ..... . ..................... . ..... ..... ... . ... . . .
lowQualScore : 9 99 9 888 9 333 88888 4 000000000000000000000 4 33333 88888 333 9 888 9 9 9
consensus : CTGATTAAA-ATCAA-ACCTC-TCAC--TTCG-CTCAT---T-----ATACGGACAGTCG-CTCGTGG--GAGTCACCC-------CCACGAG-CGACT-----GTCCGTAT-----A---ATGAG-CGAA--GTGA-GAGGT-TTGAT-TTTAATCAG
Reference ( gi|1 ) : CTGATTAAA-ATCAA-GCCTC-TCAT--TTCG-CTCAT---T-----ATACGGATAGTCG-CTCGTGG--GAGCCACCCGGGGGAGCCACGAG-CGACT-----ATCCGTAT-----A---ATGAG-CGAA--ATGA-GAGGT-TTGAT-TTTAATCAG
gi|3 : CTGATTACA-ATCGA-ACCTC-TCAC--TTCG-CTCAT---T-----ACA-GCATGAACG-----------AGTCGTTTGAGG-----ACGAG-CAACT-----GTCAGTAT-----A---ATGAG-CAAA--GTGA-GGGGT-TTGGT-TTTAATCAG
gi|3 : CTGATTAAA-ACCAA-ACCCC-TCAC--TTTG-CTCAT---T-----ATACTGACAGTTG-CTCGT--------------------CCTCAAA-CGACTCGTTCATGC-TGT-----A---ATGAG-CGAA--GTGA-GAGGT-TCGAT-TGTAATCAGg
gi|2 : CTGATTAAA-ATCAA-ACCTCATCACGGGTCG-CTCAT---T-----AT-C-GATAG--GACTCGTGG--GGGTCCTCT-------CCAC-AG--GACT-----AT-CGTAT-----A---ATGAG-CG-A--ATGA-GAGTTATTGATATTTg
gi|10 : cCTGATTAAA-ATCAA-ACCTC-TCAC--TTCG-CTCAT---T-----ATAAGGATAGTCG-CTCGac
gi|7 : CTGATTAAA-ATCAA-ACCTC-TCAC--TTCG-CTCAT---T-----ATACGTATAGTCG-CTCac
gi|8 : tCTGATTAAA-ATCAA-ACCTC-TCAC--TTAG-CTCAT---T-----ATACGGACAGTCA-CTCATac
gi|13 : CTGATTAAA-ATCAA-ACCTC-TCCT--TTTG-CTCAT---T-----ATACGGACAGTCG-a
gi|6 : CTGATTAAA-ATCAA-ACCTC-ACAC--TTCGCCTCAT---T-----ATGCGGATGATCG-CTCGTac
gi|4 : CTGATTAAA-ATCAA-ACCTC-TCAC--TTCG-TTCATAGATCATGAACACAGACAGTCG-CTCGTGAATGAGCCAg
gi|16 : tataatcaaacctctcactCTGATTAAA-TTCAA-ACCTC-TCAC--TTCG-CTCAT---T-----ATACCGACAGTa
gi|9 : CTGATTAAA-ATCAA-ACCTT-TCAC--TTCG-CTCAA---T-----GTATCGACAGTTG-CTCa
gi|15 : gtCTGATTAAA-ATCAA-AC------AC--TTCA-CTCAT---T-----ACACAGACAGTCG-CTCGt
gi|14 : CTGATTAAA-ATAAA-AC------AT-------CTCAC---T-----ATACGGATAGTCG-CTCGTGG--ac
gi|12 : CTTATTAAT-ATCAA-ATCTC-TTAC--TTCG-CTCAA---T-----ATACAGACAGTCA-CTTGact
gi|18 : CTAATAAAA-ATTAA-ACCTC-TCAC--TTTG-CTCAT---T-----ATACGG
gi|17 : TGATTAAA-ATCAA-ACCTC-TCAC--TTCG-CTCAT---T-----ATACGGATAGTa
gi|11 : TAATTAAA-ATCAA-ACCTC-ATAT--GT-G-CTCAT---T-----ATACGGATAGTCG-CTCGT
gi|5 : GATTAAA-ATCAA-ACCTC-TGAC--TTCG-CTCAT---T-----ATTTGGACAGTCA-CTTGTG--------ACTC----------CGA------------------AT-----A---ATGAG-CGAA--GTGA-GAGGT-TTGAT-a
gi|4 : TATA-ATCAA-ACCTC-TCAC--TTGG-CTCAT---T-----
gi|2 : AAATATCAATAACTC-TCAT--T-CG-CTCAT---T-----ATACG-ATAGTC--CT-GTGGA-GAGG-ACCC-------CCACGAGTC--CT-----ATC-G-AT-----A---ATGAG-CGACCCGTGATGAGGT-TTGAT-TTTAATCAGcacgagcgactgtctgtgttcatgatctatgaacgaagtgagaggtttgattttaatcaga
gi|5 : c-ATCAA-ACCTC-TCAC--TTCG-CTCAT---T-----AT--------TC--------G--GAGTCAC-------------AAG-TGACT-----GTCCAAAT-----A---ATGAG-CGAA--GTCA-GAGGT-TTGAT-TTTAATCac
gi|14 : CCACGAG-CGACT-----ATCCGTAT-----A---GTGAG-------AT------GT-TTTAT-TTTAATCAG
gi|4 : CACGAG-CGACT-----GTCTGTGTTCATGATCTATGAA-CGAA--GTGA-GAGGT-TTGAT-TTTAATCAGact
gi|8 : tataatcaaacctctcacttggctcattATGAG-TGACT-----GTCCGTAT-----A---ATGAG-CTAA--GTGA-GAGGT-TTGAT-TTTAATCAGa
gi|6 : ACGAG-CGATC-----ATCCGCAT-----A---ATGAGGCGAA--GTGT-GAGGT-TTGAT-TTTAATCAGa
gi|11 : ACGAG-CGACT-----ATCCGTAT-----A---ATGAG-C-AC--ATAT-GAGGT-TTGAT-TTTAATTAg
gi|10 : CGAG-CGACT-----ATCCTTAT-----A---ATGAG-CGAA--GTGA-GAGGT-TTGAT-TTTAATCAGa
gi|15 : CGAG-CGACT-----GTCTGTGT-----A---ATGAG-TGAA--GT------GT-TTGAT-TTTAATCAGac
gi|12 : CAAG-TGACT-----GTCTGTAT-----A---TTGAG-CGAA--GTAA-GAGAT-TTGAT-ATTAATAAGac
gi|7 : GAG-CGACT-----ATACGTAT-----A---ATGAG-CGAA--GTGA-GAGGT-TTGAT-TTTAATCAG
gi|9 : tGAG-CAACT-----GTCGATAC-----A---TTGAG-CGAA--GTGA-AAGGT-TTGAT-TTTAATCAGac
gi|13 : gt-CGACT-----GTCCGTAT-----A---ATGAG-CAAA--AGGA-GAGGT-TTGAT-TTTAATCAGt
gi|17 : ACT-----ATCCGTAT-----A---ATGAG-CGAA--GTGA-GAGGT-TTGAT-TTTAATCAac
gi|16 : ACT-----GTCGGTAT-----A---ATGAG-CGAA--GTGA-GAGGT-TTGAA-TTTAATCAG
gi|18 : CCGTAT-----A---ATGAG-CAAA--GTGA-GAGGT-TTAAT-TTTTATTAGa
gi|4 : -----A---ATGAG-CCAA--GTGA-GAGGT-TTGAT-TATAa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG
Alignments
lowQualScore : 1111 5555555555555555 1 111 1 1
lowQualScore : 2 22 2 333 55555 1 2 2222 1 1111111111111111 6 0 6 777 6 0 0
lowQualScore : . .. . ... ..... . . .... . ................ . . . ... . . .
lowQualScore : 1 99 1 777 33333 0 7 7777 8 1111111111111111 5 0 5 555 5 0 0
consensus : CTGATTAAAATCAAACCTC-TCAC--TTCG-CTCAT---T-----ATACGGACAGTCG-CTCGTGG--GAGCCACCC-------CCACGAGCGACT-GTCCG---TATAATGAGCGAAGTGAGAGGT-TTGAT-TTTAATCAG
Reference ( family-5529 ) : CTGATTAAAATCAAACCTC-TCAC--TTCG-CTCAT---T-----ATACGGACAGTCG-CTCGTGG--GAGTCACCC-------CCACGAGCGACT-GTCCG---TATAATGAGCGAAGTGAGAGGT-TTGAT-TTTAATCAG
gi|1 : CTGATTAAAATCAAGCCTC-TCAT--TTCG-CTCAT---T-----ATACGGATAGTCG-CTCGTGG--GAGCCACCCGGGGGAGCCACGAGCGACT-ATCCG---TATAATGAGCGAAATGAGAGGT-TTGAT-TTTAATCAG
gi|10 : CTGATTAAAATCAAACCTC-TCAC--TTCG-CTCAT---T-----ATAAGGATAGTCG-CTCG
gi|11 : TAATTAAAATCAAACCTC-ATAT--GT-G-CTCAT---T-----ATACGGATAGTCG-CTCGTac
gi|12 : CTTATTAATATCAAATCTC-TTAC--TTCG-CTCAA---T-----ATACAGACAGTCA-CTTGa
gi|13 : CTGATTAAAATCAAACCTC-TCCT--TTTG-CTCAT---T-----ATACGGACAGTCG-
gi|14 : CTGATTAAAATAAAACATC-TCAC--T------------------ATACGGATAGTCG-CTCGTGG--ac
gi|15 : CTGATTAAAATCAAAC------AC--TTCA-CTCAT---T-----ACACAGACAGTCG-CTCGact
gi|16 : CTGATTAAATTCAAACCTC-TCAC--TTCG-CTCAT---T-----ATACCGACAGTac
gi|17 : TGATTAAAATCAAACCTC-TCAC--TTCG-CTCAT---T-----ATACGGATAGTa
gi|18 : CTAATAAAAATTAAACCTC-TCAC--TTTG-CTCAT---T-----ATACGG
gi|2 : CTGATTAAAATCAAACCTCATCACGGGTCG-CTCAT---T-----AT-C-GATAG--GACTCGTGG--GGGTCCTCT-------CCAC-AG-GACT-AT-CG---TATAATGAGCGAA-TGAGAGTTATTGATATTTa
gi|3 : cCTGATTAAAACCAAACCCC-TCAC--TTTG-CTCAT---T-----ATACTGACAGTTG-CTCGT-----------CC-------TCA--AACGACTCGTTCATGCTGTAATGAGCGAAGTGAGAGGT-TCGAT-TGTAATCAGac
gi|4 : TATAATCAAACCTC-TCAC--TTGG-CTCAT---T-----g
gi|4 : CTGATTAAAATCAAACCTC-TCAC--TTCG-TTCATAGATCATGAACACAGACAGTCG-CTCGTGAATGAGCCAcacgagcgactgtctgtgttcatgatctatgaacgaagtgagaggtttgattttaatcaga
gi|5 : tataatcaaacctctcactATCAAACCTC-TCAC--TTCG-CTCAT---T-----AT-------------TCG-----GAGTCAC-------------AAGTGACT-GTCCA---AATAATGAGCGAAGTCAGAGGT-TTGAT-TTTAATCa
gi|6 : CTGATTAAAATCAAACCTC-ACAC--TTCGCCTCAT---T-----ATGCGGATGATCG-CTCGT
gi|7 : CTGATTAAAATCAAACCTC-TCAC--TTCG-CTCAT---T-----ATACGTATAGTCG-CTCg
gi|8 : tCTGATTAAAATCAAACCTC-TCAC--TTAG-CTCAT---T-----ATACGGACAGTCA-CTCATac
gi|9 : CTGATTAAAATCAAACCTT-TCAC--TTCG-CTCAA---T-----GTATCGACAGTTG-CTCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG
Alignments
lowQualScore : 999999999999999999999999999999999999999999 11 1
lowQualScore : 2 2 2 333 55555 666666666666666666666666666666666666666666 33 0
lowQualScore : . . . ... ..... .......................................... .. .
lowQualScore : 1 1 1 777 33333 222222222222222222222222222222222222222222 88 0
consensus : CTGATTAAA-ATCAA-ACCTCTCACTTCG-CTCAT---T-----ATACGGACAGTCGCTCGTGG--GAGCCACCC-------CCACGAG-CGACT-ATCCG---TATAATGAGCGAA--GTGA-GAGGTTTGATTTTAATCAG
Reference ( family-5529 ) : CTGATTAAA-ATCAA-ACCTCTCACTTCG-CTCAT---T-----ATACGGACAGTCGCTCGTGG--GAGCCACCC-------CCACGAG-CGACT-GTCCG---TATAATGAGCGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|1 : CTGATTAAA-ATCAA-GCCTCTCATTTCG-CTCAT---T-----ATACGGATAGTCGCTCGTGG--GAGCCACCCGGGGGAGCCACGAG-CGACT-ATCCG---TATAATGAGCGAA--ATGA-GAGGTTTGATTTTAATCAG
gi|10 : CTGATTAAA-ATCAA-ACCTCTCACTTCG-CTCAT---T-----ATAAGGATAGTCGCTCG
gi|11 : TAATTAAA-ATCAA-ACCTCATATGT-G-CTCAT---T-----ATACGGATAGTCGCTCGTac
gi|12 : CTTATTAAT-ATCAA-ATCTCTTACTTCG-CTCAA---T-----ATACAGACAGTCACTTGa
gi|13 : CTGATTAAA-ATCAA-ACCTCTCCTTTTG-CTCAT---T-----ATACGGACAGTCG
gi|14 : CTGATTAAA-ATAAA-ACATCTCACT------------------ATACGGATAGTCGCTCGTGG--ac
gi|15 : CTGATTAAA-ATCAA-AC-----ACTTCA-CTCAT---T-----ACACAGACAGTCGCTCGact
gi|16 : CTGATTAAA-TTCAA-ACCTCTCACTTCG-CTCAT---T-----ATACCGACAGTac
gi|17 : TGATTAAA-ATCAA-ACCTCTCACTTCG-CTCAT---T-----ATACGGATAGTa
gi|18 : CTAATAAAA-ATTAA-ACCTCTCACTTTG-CTCAT---T-----ATACGG
gi|2 : AAATATCAATAACTCTCA-TTCG-CTCAT---T-----ATACG-ATAGTC-CT-GTGGA-GAGG-ACCC-------CCACGAGTC--CT-ATC-G----ATAATGAGCGACCCGTGATGAGGTTTGATTTTAATCAGa
gi|3 : cCTGATTAAA-ACCAA-ACCCCTCACTTTG-CTCAT---T-----ATACTGACAGTTGCTCGT-----------CC-------TCA--AA-CGACTCGTTCATGCTGTAATGAGCGAA--GTGA-GAGGTTCGATTGTAATCAGac
gi|4 : TATA-ATCAA-ACCTCTCACTTGG-CTCAT---T-----g
gi|4 : CTGATTAAA-ATCAA-ACCTCTCACTTCG-TTCATAGATCATGAACACAGACAGTCGCTCGTGAATGAGCCAcacgagcgactgtctgtgttcatgatctatgaacgaagtgagaggtttgattttaatcaga
gi|5 : tataatcaaacctctcactGATTAAA-ATCAA-ACCTCTGACTTCG-CTCAT---T-----ATTTGGACAGTCACTTGTG--------AC------------------------TCCG---AATAATGAGCGAA--GTGA-GAGGTTTGATa
gi|6 : CTGATTAAA-ATCAA-ACCTCACACTTCGCCTCAT---T-----ATGCGGATGATCGCTCGT
gi|7 : CTGATTAAA-ATCAA-ACCTCTCACTTCG-CTCAT---T-----ATACGTATAGTCGCTCg
gi|8 : tCTGATTAAA-ATCAA-ACCTCTCACTTAG-CTCAT---T-----ATACGGACAGTCACTCATac
gi|9 : CTGATTAAA-ATCAA-ACCTTTCACTTCG-CTCAA---T-----GTATCGACAGTTGCTCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG
Alignments
lowQualScore : 7777777777777777777
lowQualScore : 3 3 555 77777 8888888888888888888 0 4 99999 22 3 55 3
lowQualScore : . . ... ..... ................... . . ..... .. . .. .
lowQualScore : 1 1 444 77777 7777777777777777777 1 0 11111 77 6 00 6
consensus : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG--GAG--ACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
Reference ( family-5529 ) : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG--GAGCCACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|1 : CTGATTAAA-ATCAA-GCCTCTCATTTCGCTCAT---T-----ATACGGATAGTCGCTCGTGG--GAGCCACCCGGGGGAGCCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--ATGA-GAGGTTTGATTTTAATCAG
gi|10 : CGAG-CGACT-----ATCCTTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|11 : ACGAG-CGACT-----ATCCGTATAATGAG-C-AC--ATAT-GAGGTTTGATTTTAATTAac
gi|12 : CTTATTAAT-ATCAA-ATCTCTTACTTCGCTCAA---T-----ATACAGACAGTCACTTGa
gi|13 : CTGATTAAA-ATCAA-ACCTCTCCTTTTGCTCAT---T-----ATACGGACAGTCG
gi|14 : -------CCACGAG-CGACT-----ATCCGTAT----------A--GTGA-GATGTTTTATTTTAATCAGac
gi|15 : CTGATTAAA-ATCAA-AC-----ACTTCACTCAT---T-----ACACAGACAGTCGCTCGact
gi|16 : CTGATTAAA-TTCAA-ACCTCTCACTTCGCTCAT---T-----ATACCGACAGTac
gi|17 : ACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAa
gi|18 : CTAATAAAA-ATTAA-ACCTCTCACTTTGCTCAT---T-----ATACGG
gi|2 : AAATATCAATAACTCTCA-TTCGCTCAT---T-----ATACG-ATAGTC-CT-GTGGA-GAGG-ACCC-------CCACGAGTC--CT-----ATC-G-ATAATGAG-CGACCCGTGATGAGGTTTGATTTTAATCAGa
gi|3 : cCTGATTAAA-ACCAA-ACCCCTCACTTTGCTCAT---T-----ATACTGACAGTTGCTCGT-----------CC-------TCA--AA-CGACTCGTTCATGC-TGTAATGAG-CGAA--GTGA-GAGGTTCGATTGTAATCAGac
gi|4 : TATA-ATCAA-ACCTCTCACTTGGCTCAT---T------CACGAGCGACTGTCTGTG-----------T-------TCATG-------------ATCT-----ATGAA-CGAA--GTGA-GAGGTTTGATTTTAATCAGg
gi|4 : CTGATTAAA-ATCAA-ACCTCTCACTTCGTTCATAGATCATGAACACAGACAGTCGCTCGTGAATGAGCCAa
gi|5 : tataatcaaacctctcactGATTAAA-ATCAA-ACCTCTGACTTCGCTCAT---T-----ATTTGGACAGTCACTTGTG--------AC----------------------------TCCGAATAATGAG-CGAA--GTGA-GAGGTTTGATa
gi|6 : ACGAG-CGATC-----ATCCGCATAATGAGGCGAA--GTGT-GAGGTTTGATTTTAATCAG
gi|7 : GAG-CGACT-----ATACGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAGg
gi|8 : tCTGATTAAA-ATCAA-ACCTCTCACTTAGCTCAT---T-----ATACGGACAGTCACTCATac
gi|9 : CTGATTAAA-ATCAA-ACCTTTCACTTCGCTCAA---T-----GTATCGACAGTTGCTCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG
Alignments
lowQualScore : 88888888888888888888
lowQualScore : 3 3 555 88888 0 33333333333333333333 0 4 99999 1 3 55 3
lowQualScore : . . ... ..... . .................... . . ..... . . .. .
lowQualScore : 3 3 888 33333 2 99999999999999999999 1 0 11111 4 6 00 6
consensus : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG-GAG--ACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
Reference ( family-5529 ) : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG-GAG--ACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|1 : CTGATTAAA-ATCAA-GCCTCTCATTTCGCTCAT---T-----ATACGGATAGTCGCTCGTGG-GAGCCACCCGGGGGAGCCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--ATGA-GAGGTTTGATTTTAATCAG
gi|10 : CGAG-CGACT-----ATCCTTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|11 : ACGAG-CGACT-----ATCCGTATAATGAG-C-AC--ATAT-GAGGTTTGATTTTAATTAac
gi|12 : CTTATTAAT-ATCAA-ATCTCTTACTTCGCTCAA---T-----ATACAGACAGTCACTTGa
gi|13 : CTGATTAAA-ATCAA-ACCTCTCCTTTTGCTCAT---T-----ATACGGACAGTCG
gi|14 : -------CCACGAG-CGACT-----ATCCGTAT----------A--GTGA-GATGTTTTATTTTAATCAGac
gi|15 : CTGATTAAA-ATCAA-AC-----ACTTCACTCAT---T-----ACACAGACAGTCGCTCGact
gi|16 : CTGATTAAA-TTCAA-ACCTCTCACTTCGCTCAT---T-----ATACCGACAGTac
gi|17 : ACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAa
gi|18 : CTAATAAAA-ATTAA-ACCTCTCACTTTGCTCAT---T-----ATACGG
gi|2 : AAATATCAATAACTCTCA-TTCGCTCAT---T-----ATACG-ATAGTC-CT-GTGGAGAGG-ACCC-------CCACGAGTC--CT-----ATC-G-ATAATGAG-CGACCCGTGATGAGGTTTGATTTTAATCAGa
gi|3 : cCTGATTAAA-ACCAA-ACCCCTCACTTTGCTCAT---T-----ATACTGACAGTTGCTCGT----------CC-------TCA--AA-CGACTCGTTCATGC-TGTAATGAG-CGAA--GTGA-GAGGTTCGATTGTAATCAGac
gi|4 : CTGATTAAA-ATCAA-ACCTCTCACTTCGTTCATAGATCATGAACACAGACAGTCGCTCGTGA-------------------ATGAG-CCA-------------------------A--GTGA-GAGGTTTGATTATAg
gi|5 : GATTAAA-ATCAA-ACCTCTGACTTCGCTCAT---T-----ATTTGGACAGTCACTTGT-----G--AC----------------------------TCCGAATAATGAG-CGAA--GTGA-GAGGTTTGATa
gi|6 : ACGAG-CGATC-----ATCCGCATAATGAGGCGAA--GTGT-GAGGTTTGATTTTAATCAG
gi|7 : GAG-CGACT-----ATACGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAGg
gi|8 : tCTGATTAAA-ATCAA-ACCTCTCACTTAGCTCAT---T-----ATACGGACAGTCACTCATac
gi|9 : CTGATTAAA-ATCAA-ACCTTTCACTTCGCTCAA---T-----GTATCGACAGTTGCTCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG
Alignments
lowQualScore : 88888888888888888888
lowQualScore : 3 3 555 88888 0 33333333333333333333 0 4 99999 1 3 55 3
lowQualScore : . . ... ..... . .................... . . ..... . . .. .
lowQualScore : 3 3 888 33333 2 99999999999999999999 1 0 11111 4 6 00 6
consensus : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG-GAG--ACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
Reference ( family-5529 ) : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG-GAG--ACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|1 : CTGATTAAA-ATCAA-GCCTCTCATTTCGCTCAT---T-----ATACGGATAGTCGCTCGTGG-GAGCCACCCGGGGGAGCCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--ATGA-GAGGTTTGATTTTAATCAG
gi|10 : CGAG-CGACT-----ATCCTTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|11 : ACGAG-CGACT-----ATCCGTATAATGAG-C-AC--ATAT-GAGGTTTGATTTTAATTAac
gi|12 : CTTATTAAT-ATCAA-ATCTCTTACTTCGCTCAA---T-----ATACAGACAGTCACTTGa
gi|13 : CTGATTAAA-ATCAA-ACCTCTCCTTTTGCTCAT---T-----ATACGGACAGTCG
gi|14 : -------CCACGAG-CGACT-----ATCCGTAT----------A--GTGA-GATGTTTTATTTTAATCAGac
gi|15 : CTGATTAAA-ATCAA-AC-----ACTTCACTCAT---T-----ACACAGACAGTCGCTCGact
gi|16 : CTGATTAAA-TTCAA-ACCTCTCACTTCGCTCAT---T-----ATACCGACAGTac
gi|17 : ACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAa
gi|18 : CTAATAAAA-ATTAA-ACCTCTCACTTTGCTCAT---T-----ATACGG
gi|2 : AAATATCAATAACTCTCA-TTCGCTCAT---T-----ATACG-ATAGTC-CT-GTGGAGAGG-ACCC-------CCACGAGTC--CT-----ATC-G-ATAATGAG-CGACCCGTGATGAGGTTTGATTTTAATCAGa
gi|3 : cCTGATTAAA-ACCAA-ACCCCTCACTTTGCTCAT---T-----ATACTGACAGTTGCTCGT----------CC-------TCA--AA-CGACTCGTTCATGC-TGTAATGAG-CGAA--GTGA-GAGGTTCGATTGTAATCAGac
gi|4 : CTGATTAAA-ATCAA-ACCTCTCACTTCGTTCATAGATCATGAACACAGACAGTCGCTCGTGA-------------------ATGAG-CCA-------------------------A--GTGA-GAGGTTTGATTATAg
gi|5 : GATTAAA-ATCAA-ACCTCTGACTTCGCTCAT---T-----ATTTGGACAGTCACTTGT-----G--AC----------------------------TCCGAATAATGAG-CGAA--GTGA-GAGGTTTGATa
gi|6 : ACGAG-CGATC-----ATCCGCATAATGAGGCGAA--GTGT-GAGGTTTGATTTTAATCAG
gi|7 : GAG-CGACT-----ATACGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAGg
gi|8 : tCTGATTAAA-ATCAA-ACCTCTCACTTAGCTCAT---T-----ATACGGACAGTCACTCATac
gi|9 : CTGATTAAA-ATCAA-ACCTTTCACTTCGCTCAA---T-----GTATCGACAGTTGCTCa
blockSeqs : T T AGA CATGA GGAGAGGACCCC T CGTTC T G CC T
blockSeqs : . . . . CCT . . T . . .
blockSeqs : . . . . GAC . . T . . .
blockSeqs : . . . . GA . . T . . .
blockSeqs : . . . . . . T . . .
blockSeqs : . . . . . . A . . .
blockSeqs : . . . . . . C . . .
blockSeqs : . . . . . . T . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : GNC*****************
originalCons : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGG-GAG--ACCC-------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
finalCons : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTGNC-----------------CACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG
Alignments
lowQualScore : 99999999999999999999999999
lowQualScore : 3 3 555 88888 0 11111111111111111111111111 22 4 99999 1 3 55 3
lowQualScore : . . ... ..... . .......................... .. . ..... . . .. .
lowQualScore : 3 3 888 33333 2 33333333333333333333333333 88 0 11111 4 6 00 6
consensus : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTG----------------G---------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
Reference ( family-5529 ) : CTGATTAAA-ATCAA-ACCTCTCACTTCGCTCAT---T-----ATACGGACAGTCGCTCGTG----------------N---------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|1 : CTGATTAAA-ATCAA-GCCTCTCATTTCGCTCAT---T-----ATACGGATAGTCGCTCGTGGGAGCCACCCGGGGGAG---------CCACGAG-CGACT-----ATCCGTATAATGAG-CGAA--ATGA-GAGGTTTGATTTTAATCAG
gi|10 : CGAG-CGACT-----ATCCTTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAG
gi|11 : ACGAG-CGACT-----ATCCGTATAATGAG-C-AC--ATAT-GAGGTTTGATTTTAATTAac
gi|12 : CTTATTAAT-ATCAA-ATCTCTTACTTCGCTCAA---T-----ATACAGACAGTCACTTGa
gi|13 : CTGATTAAA-ATCAA-ACCTCTCCTTTTGCTCAT---T-----ATACGGACAGTCG
gi|14 : ---------CCACGAG-CGACT-----ATCCGTAT----------A--GTGA-GATGTTTTATTTTAATCAGac
gi|15 : CTGATTAAA-ATCAA-AC-----ACTTCACTCAT---T-----ACACAGACAGTCGCTCGact
gi|16 : CTGATTAAA-TTCAA-ACCTCTCACTTCGCTCAT---T-----ATACCGACAGTac
gi|17 : ACT-----ATCCGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAa
gi|18 : CTAATAAAA-ATTAA-ACCTCTCACTTTGCTCAT---T-----ATACGG
gi|2 : AAATATCAATAACTCTCA-TTCGCTCAT---T-----ATACG-ATAGTC-CT-GTG----------------GAGAGGACCCCCACGAGTC--CT-----ATC-G-ATAATGAG-CGACCCGTGATGAGGTTTGATTTTAATCAGa
gi|3 : cCTGATTAAA-ACCAA-ACCCCTCACTTTGCTCAT---T-----ATACTGACAGTTGCTCGT---------------------------CCTCAAA-CGACTCGTTCATGC-TGTAATGAG-CGAA--GTGA-GAGGTTCGATTGTAATCAGac
gi|4 : CTGATTAAA-ATCAA-ACCTCTCACTTCGTTCATAGATCATGAACACAGACAGTCGCTCGTG----------------------------------------------------AATGAG-CCAA--GTGA-GAGGTTTGATTATAg
gi|5 : GATTAAA-ATCAA-ACCTCTGACTTCGCTCAT---T-----ATTTGGACAGTCACTTGTG----------------A---------C------------------TCCGAATAATGAG-CGAA--GTGA-GAGGTTTGATa
gi|6 : ACGAG-CGATC-----ATCCGCATAATGAGGCGAA--GTGT-GAGGTTTGATTTTAATCAG
gi|7 : GAG-CGACT-----ATACGTATAATGAG-CGAA--GTGA-GAGGTTTGATTTTAATCAGg
gi|8 : tCTGATTAAA-ATCAA-ACCTCTCACTTAGCTCAT---T-----ATACGGACAGTCACTCATac
gi|9 : CTGATTAAA-ATCAA-ACCTTTCACTTCGCTCAA---T-----GTATCGACAGTTGCTCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGAAATCGTACCTTTCAGTTCACGGAAAGCAGCTCTG