lowQualScore : 1111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1111 5555555555555 2222 3333333333 55555555555555555555555555 111 2 11 3333333333 11 222 1111 1 1111111111 1111 2 22222222 444444444444444444444 22222 1111 8888888888888888888888888888888888888888888888 11 1111 1111111 11111 1111 222222222222222222 11111 1 5555555555555555 4444444444444444 22222 22222 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666 4 1 1
lowQualScore : 2 99 4444 0000000000000 1 3 0000 3 0000000000 22222222222222222222222222 111 6 4 1 00 77 2222222222 3 11 111 111 4 2222 6 1 8888888888 1 0 0000 0 22222222 66 9999 5 666666666666666666666 0 44444 22 2 22 0000 2222222222222222222222222222222222222222222222 1 33 66 3333 4 4 2 9999999 4 22222 8888 888 44 77 666 999 0 333333333333333333 6 6 00000 0 5555555555555555 8 0 8 3333333333333333 2 55555 22222 2 77 6 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9999 6 0 5 7
lowQualScore : . .. .... ............. . . .... . .......... .......................... ... . . . .. .. .......... . .. ... ... . .... . . .......... . . .... . ........ .. .... . ..................... . ..... .. . .. .... .............................................. . .. .. .... . . . ....... . ..... .... ... .. .. ... ... . .................. . . ..... . ................ . . . ................ . ..... ..... . .. . ............................................................................................................................... .... . . . .
lowQualScore : 5 22 2222 3333333333333 0 2 7777 2 0000000000 33333333333333333333333333 777 7 2 0 00 33 0000000000 5 00 666 666 8 6666 0 4 3333333333 7 7 1111 0 44444444 99 6666 0 444444444444444444444 4 99999 22 5 55 6666 1111111111111111111111111111111111111111111111 6 88 11 4444 4 0 2 1111111 2 55555 2222 888 44 99 000 777 4 222222222222222222 7 7 77777 0 5555555555555555 0 8 0 0000000000000000 5 00000 55555 8 88 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0000 0 0 0 0
consensus : ATGTNATGTA--CGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATTG--TGATT--TTATAATTGT-AATTCAA-TTTC-CT---TGTTA-GTTTT---G-ATTAA-GTCTTTACAAA-TTTA-T-AA--T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAAAGCA-T-TTTCACACG--TG--TG--CACAATACTCAA--C-TTTGACA--C----C--TCTT-TC-CTGTT-TC---A-CT-GGGGC-AG--TG-GAAATTG-G--GTTTCTNCAATCT----ATCG-AA-TTTANGGTCA-GAT-TCT-GGGATTGCG----------TCCTTTGATTTG-GTT--ATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAA-T--NT-ATGTCGTA-----GAGCTTTC--CCCTG---ATNT--T-G-CA-ACTTTCTTTA-----GTTT--A-T---TCC-AT-TGG-TCAATT-TGGGGA-TGCNNAAG-CGGGCGG-TTCTGTCAAAG-TTGAA---A-----C---G--TGTGAGTTTGCA-----TTAGGAATAA-TTNTACTAAAATTNTT-T-----G-AAAAA--TT-----AGGT-TTGTTACCTT-T-TGCTTGTGG--CTNTGTCGTTGATAGAATTCAACGCGTTCGNANTNTAATATATAGAGTAAACTNTGTGAAGACTT--NAAAACGATTGTGTTT-TATATATGGG-ACACTCAAATTA
Reference ( gi|2 ) : ATGTCATGTA--CATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATTG--TGATT--TTATAATTGT-AATTCAAATTTC-TT---TGTTA-GTTTT---G-ATTAATGTCTTTACAAG-TTTG-T-AA--T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACA-T-TT-CACACG--TG--TG--CACAATACTCAA--C-TT-GACA--C----C--TCTT-TC-CTGTT-TC---A-CT-TGGGC-AG--TATGAAATTG-G--GTTTCTCTAATCT----ATC--C--TTTAAAGTCACGATTTTTTGGGATTGTGATTATATTTTTCCTTTGATTTG-GTT--ATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAA-T--GT-ATGTCATA-----GAGCTTCC--CCCTG---ATGT--T-G-CA-ACTTTCTTTA-----GTTT--A-T---TCC-AT-TGA-TCAATT-TG-----TACCCAGG-TAGGCGG-TTCTGTCAAAG-TTGAG---A-----C---G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT-----AAGT-TTGTTAACTT-TCTGCTTGTAAAACTCT-T-GTTAATA-AATTCTA----TTCGGACTTTA----A-----TAAATTTTG-GA--ACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTATTA
gi|6 : ATGTCATATA--CGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATTG--TGATT--TTATAATTGT-AAT-CAATTTTCATTCAATGT-A-GTTTT---GGATTAA-GTCTTTACAAA-TTAG-T-AA--TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCA-T-TTTCACACG--TT--TT--CACAATACTCAA--C-TTTGACA--C----C--T---------GTT-TC---A-CT-GGGGC-AG--TA-GAAATTG-G--GTT-CTCTAATCT----ATCG-CA-TTTAAAGTCA-GATCTT--GGGATTGTA---------TTCCTTTGATTTG-GTA--ATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAA-T--TT-ATGTCATA-----GAGCTTTC--CCCTG---ATGT--T-G-CA-ACTTTCTTT
gi|14 : ccaatTGTAATGTA--CATGT----G--CTATATA------CAGGGTTTGTAAATGAAAAATCAGTGTTTTATC--TTATAATTGT-GATT----TCTC-CC---T-TTA---------G-ATCAAT-TTTGTATTAGATTTA-TCAG--T----GAAAATTAATTGCTT
gi|5 : tatgtTGTA--AATGT----ATTATATACACAT-GTCA----CTATAA-T-AA-AAT--TTT--TGCTTACTTATAGTAGTGAATTCA--TTTT-CT---TGTCA-GTTTT---G-GATAAAGTCTTTGCAAA-TTTA-T-GA--TTTAAAAAAAATAATTGCTTT--TCTTAAT-G-TTTGATTTTTAGGGAAAGGA-TATT-CTCATGATTG--TGTTCACAATACCCAA--CTTT-AACC--A----C--TCTT-TT-CCGTT-TC---A-CT-GTGGT-AG--TG-GAGATT--G--GTGTCTATACTCT----ATCA-CA-TTTAAGGTCA-GA--TCTTGGGATTGCA---------TTCCTTTG--------T--ATA------TCTCAC-TCAT-TTTACCATCATAAA-T--TT-ATGCCACA-----GTGCTT-T--CCTTG---GTAT--T-A-CA-ACATTCTTTG-----GTTA--A-T---TCC-TT-TGG-CCAATa
gi|7 : tgcaaatatTGTATTCA-GT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATTG--TGATT--TTATAATTGTGAATTTAA----T-TT---TATTAAGTTTG---G-ATTAA-GTCCATACAAA-ATTG-T-A---T----GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCA-T-TTTCACACA--TG--TT--CACGATACTCAA--C-TTTGACA--C----C--TCTT-TC-CTGTT-TT---A-C---GCGCCAGACTA-GAAATTG-A---TTCCTCTAATCT----ATCG-CA-TTTAACGTCAacgtcggttt
gi|4 : TGTA--CATGT----GTTTTA-----ATA--TAGGGTTT--------ATAATCATT--------------AATTGT-GA----AATTTC-CT----GCAA-GTTTTTTGG-ATTAA-GTATT-ACAAA-ATTAAT-AAATT----GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC----TT-CA---------------ACAATTCT-AA--C-TTTGACAGACGATACAATCTT-TC-TTGTT-TT---A-CCGTGGCC-CG--TAGGCA--TG-C--GTTT-TATAATCTTATCACC--A--TCTAAGGTCAAGATCTT---GG----------------------GATTTG-TTT--ATGCTTA-CTCTCACATCAA-TTTACCATTGTAAA-T--GA-ATACCATATCCTTTAGCTTTT--ACCCG---ATGT--TGG-CACACTTTTTTT-------TTT--ACT---TCCGATCTGG-TC-ATT-TA-----TACTCAAG-CAGGCGGTTTCTGTCAAAGTTTGAGC--A-----CGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT-----AGAT-TTG-TACCCTATCTGCTTtattgcattccatgcctgtctctcactcattttaccatcgtaaattgttatcatagagcttttccctgat
gi|9 : acTA--TGTGT----GTTTTA--------ATTAGGGTTTGTAAAT-GATATTCA------------TTATAATTG------GGAATTTT-TT---AGTT---TTTT---G-AATGTAGTATTTACAAA-TTCA-T-GAT-T----GAAAAAAAACTATTTT--ATATGAT-G-TTTGATCTTTAGGAAAACCATT-TT-CACATG--TGATTG--CAT--TTCTCAA--CTTT-GACT--A----C--TCTT-AT-CTGTT-TC---A-AG-GTGGC-AA--TG-GAAATT--G--GTTTCTACAAGTT----CTCAAA--TTTATGGTCG-GA--TCTAGAGATTGTGCGT---------CTTTGATTTG-GTT--ACGCTTGTTTCTCAC-TCAT-
gi|3 : --TG--TG--T-TAATA---AA--C-TTTGACA--C----C--TCTC-TC-TTGTTCTC---AGCT----GC-AG--TG-GAAATTT-ACTGTTTTACCAGT--------------TTTA---TCA-GAT--------ATTGTGGTCAGAT-----CTTAGGACTGCGTTTCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAA-T--TA-ATATCGTA-----AAGCTTTA--TCCTG---AATT--T-G-CA-GTTGTGTTTA-----CTTT--A-T---TTC-AT-TGGTTTAATT-TGAGAA-TGCAAAAG--GGGCGG-TTCTGTC-AAG-TTGAAAACA-----C---GCCTGTGAGTTTGCAGGTAGTTAGAA---A-TTTTATTCAAATTGTT---------AAGAAGCTT-----A--T-TT-TTA--TT-T---CTTGTGG---TCTGT-ATT--TAGAATTCAACG--TTTGGATTATAATATA-----TAAATTGTG-AA--ATTT--GA-AACA-TTGTGTTT---TATATGGA-ACA
gi|1 : tatatgtagggattctaaaaatcatttttattgttattttattattgcgatttcttcttgtagattaatttggtatcaaattcattagtgaaatccaattgcgtgtcgggggagtgcactggcacatgttgtcgttatcaacttggccacaattACTCAAGTT-TT-GACAA-C----C--TCTTCTCTCTGCT-TCTCAG-CT-TG--C-AG--TG-GAATTTATA--GTTCATCGAAATT----ATC--AGATATGTGGTCA-GATACTT-AGGACTGCG-TGAGGCTTGTC-----ATTCA--TT--AT-----TCTCTCAC---------ACCGT--TAAG-TTGAT-AT-TCGTA-----GAGCTTTTATCCGTGCATATAT--T-GGCA-GTTTGTTTTACTAAAGCTC--A-TAATTTC-AT-TGG-TTAAGTGTGGAGATTGCAAAGG---GGCGG-TTCTGTCAAAG-TTGAA---AACATGC---C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATTATTTTCTT-TGTGC--GT----CTGT-TCGTTGATAGAATTCAACGCGTTCATAGTTTA----ATAGAGTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTAtcaattaattccacaaattgaactctcacggaacccctaattactac
gi|8 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaa-TT-GACT--A----C--TCTT-AT-CTGTT-TC---A-AG-GTGGC-AA--TG-GAAATT--G--GTTTCTACAAGTT----CTCAAA--TTTATGGTCG-GA--TCTAGAGATTGTGCGT---------CTTTGATTTG-GTT--ACGCTTGTTTCTCAC-TCAT-attccaaattgtaactccatggaaccccataattacta
gi|12 : actATTTA--TT--ATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAA----GTAATACCGTG-----GAGTTTTC--CCCGA---ATTTCCT-G-CA----TTCTGTA-----GTTC--A-T---TTC-AA-AGG-TC-TTT-TA-----CATCCAAGTTAGTTGG-ATCTATCAAAG-agagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|7 : --ATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATT--GT--TATCATA-----GAGCTTTT--CCCTG---AT
gi|15 : tgtattcagtgttttacatatatagtgtttgtaaatgaaaaagcattgtgattttataattgtgaatttaattttattaagtttggattaagtccatacaaaattgtatgaacataattgttacttcattgtattatctttagggagagcattttcacacatgttcacgatactcaactttgacacctctttcctgttttacgcgccagactagaaattgattcctctaatctatcgcatttaacgtcatattgcattccAT-TTTACCATCGTAAA-T---T-ATGTCAAA-----AAGTTTTC--CCCTA---A-AT--C-A-CA-AATTTTCTTC-----GTTTCCA-----TCC-GT-TAA-T
gi|8 : tgctatcagatttcttta-TTCTGTCAAAG-TTGAA---A-----C---G--AGT-AGTT
gi|18 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTGAG---A-----C---G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTCctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAATTTTTATTTAAATTGTTCAGAAGCTTTTAACTTTTTCTTCTCTCTGTATTTCAGTATTTTTGAAATCTATTCAACGTTTGGACCAAAATAAATTGTGAAATTTAAAAATTGTGTTTCAATGCGAAACTTCATGTCATTTCCCCAAATTGAACTCTCACAGACCCAATATAATTGCTACA
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Unaligned ( gi|17 ): TTTGCAGTTTTGTTTACTAAAGTATATTTCATTGGTTAATTTGAGATGCAAAGGG
Alignments
lowQualScore : 1111 111 222222 2222222222 1 222222 1111111 111 1 2222222222 1 111111 1111111 111111 111 22222 6666666666666666666666666666666 11 11111 222222 2222 1 333333333333333333 22222 444444444 11 2222222222222222222222 333333333 1 33 666666666 111 111 1 3333 11
lowQualScore : 1 0 2222 1 555 777777 5 7 1 1111111111 1 111111 5 7777777 0 000 1 5 5 5 5 3333333333 1 99 6 5 77 000000 0 4 8888888 66 6666 4 777 4 3 9 4 66 4 555555 0 22 8 888 4 1 8 44444 3333333333333333333333333333333 4 3 0 00 4 0 11111 999 777 1 66 8 666 0 777777 11 5 888 5 5 5 8 7777 8 99 9 8 0 111111111111111111 00000 6666 8 8 3 1 888888888 33 6666666666666666666666 333333333 2 6 00 1 1 1 000000000 3 1 7 888 999 2 2222 44 6 7
lowQualScore : . . .... . ... ...... . . . .......... . ...... . ....... . ... . . . . . .......... . .. . . .. ...... . . ....... .. .... . ... . . . . .. . ...... . .. . ... . . . ..... ............................... . . . .. . . ..... ... ... . .. . ... . ...... .. . ... . . . . .... . .. . . . .................. ..... .... . . . . ......... .. ...................... ......... . . .. . . . ......... . . . ... ... . .... .. . .
lowQualScore : 0 7 1111 7 333 333333 0 9 4 3333333333 4 444444 7 4444444 7 000 4 7 7 7 7 6666666666 7 22 7 5 99 999999 1 4 3333333 11 4444 4 888 4 4 4 4 11 4 444444 1 77 9 333 4 0 9 66666 9999999999999999999999999999999 0 6 9 33 4 7 11111 888 888 0 11 9 888 9 000000 44 0 888 0 0 0 0 8888 0 88 0 0 8 888888888888888888 00000 0000 0 8 8 0 555555555 88 8888888888888888888888 333333333 0 7 00 0 0 0 333333333 7 0 3 333 333 0 0000 00 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATTG--TGATT--TTATAATTGT-GATTCAA-TTTCC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTG-T-AA--TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--TG--TG--CACAATACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTT-TC---A-CTGNGGCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GATCTT--GGGATTG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATGT-CGTAG-----AGCTTTC--CCCTG---ATGT--TG-CA-ACTTTCTTTA-----GTTTA-T---TCC-AT-TGGTC-AATT-TGGAGAT-GCANAAGCGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTAAAATTNTT-T-----G-AAAAA--TT---AGATTTGTTA-CT-TT-TGCTTGTGNGTCTGT-CGTTGATAGAATTCAA--CGTTCGGANTTTAATA----GA-TAAACTTTGTGAAGACTT--TAAAACGATTGTGTTT-TACATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTNATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATTG--TGATT--TTATAATTGT-AATTCAA-TTTCC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-T-AA--T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAAAGCATTTTCACACG--TG--TG--CACAATACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTT-TC---A-CTGGGGCA-G--TG-GAAATTG-G--GTTTCTNCAATCT-ATCGA-AT-TTANGGTCA-GATTCT--GGGATTG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATNTATGT-CGTAG-----AGCTTTC--CCCTG---ATNT--TG-CA-ACTTTCTTTA-----GTTTA-T---TCC-AT-TGGTC-AATT-TGGGGAT-GCNNAAGCGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGGAATAA-TTNTACTAAAATTNTT-T-----G-AAAAA--TT---AGGTTTGTTACCT-TT-TGCTTGTGGCTNTGT-CGTTGATAGAATTCAACGCGTTCGNANTNTAATATATAGAGTAAACTNTGTGAAGACTT--NAAAACGATTGTGTTT-TATATATGGG-ACACTCAAATTA
gi|1 : ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCT-TCTCAG-CTTG--CA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT-AGGACTG--CG----------TGAGGCTTGTCATTCA-TTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGGCA-GTTTGTTTTACTAAAGCTCA-TAATTTC-AT-TGGTT-AAGTGTGGAGATTGCA-AAG-GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATTA--T-TT-TCTTTGTGCGTCTGTTCGTTGATAGAATTCAACGCGTTCATAGTTTAATA----GAGTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|12 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATAC-CGTGG-----AGTTTTC--CCCGA---ATTTCCTG-CA----TTCTGTA-----GTTCA-T---TTC-AA-AGGTC-attccaaattgtaactccatggaaccccataattacta
gi|14 : TGTAATGTACATGT----GCT------ATATA--CAGGGTTTGTAAATGAAAAATCAGTGTTTTATC--TTATAATTGT-GATT----TCTCC-CT---T-TA--------G-ATCA-A-TTTTGTATTAGATTTA-TCAG--T----GAAAATTAATTGCTTttttacatccaagttagttggatctatcaaag
gi|15 : tatgtAT-TTTACCATCGTAAAT-TATGT-CAAAA-----AGTTTTC--CCCTA---A-AT--CA-CA-AATTTTCTTC-----GT----T---TCC-AT-CCGTT-AATa
gi|17 : tgctatcagatttctttaT--TG-CA-GTTTTGTTTACTAAAGTATA-T---TTC-AT-TGGTT-AATT-T-GAGAT-GCAAAGG
gi|18 : tTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTg
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATTG--TGATT--TTATAATTGT-AATTCAAATTTCT-TT--GT-TAGTTTT---G-ATTA-ATGTCTTTA-CAAGTTTG-T-AA--T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--TG--TG--CACAATACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTT-TC---A-CTTGGGCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGATTTTTTGGGATTG--TGATTATATTTTT----CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATGT-CATAG-----AGCTTCC--CCCTG---ATGT--TG-CA-ACTTTCTTTA-----GTTTA-T---TCC-AT-TGATC-AATT-TG----T-ACCCAGGTAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT---AAGTTTGTTAACT-TTCTGCTTGTAAAACTCT-TGTTAATA-AATTCTA----TTCGGACTTTAA---------TAAATTTTG-GA--ACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : --TG--TG--T-TAATA---AA-CTTTGACA--C----C--TCTC-TC-TTGTTCTC---AGCTG---CA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GATCTT--AGGACTG--CG----------T----T-----------TCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATAT-CGTAA-----AGCTTTA--TCCTG---AATT--TG-CA-GTTGTGTTTA-----CTTTA-T---TTC-AT-TGGTTTAATT-TGAGAAT-GCAAAAG-GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTT---------AAGAAGCTT---A--TTT-TTA--T-TT---CTTGTGG-TCTGT--ATT--TAGAATTCAA--CGTTTGGATTATAATATATAAA-------TTGTGAAA--TT--TGAAAC-ATTGTGTTT---TATATGGA-ACA-TC-AATTAtta
gi|4 : tatatgtagggattctaaaaatcatttttattgttattttattattgcgatttcttcttgtagattaatttggtatcaaattcattagtgaaatccaattgcgtgtcgggggagtgcactggcacatgttgtcgttatcaacttggccacaattTGTACATGT----GTTTTA---ATATAG----GGTTTATAA--------TCATT--------------AATTGT-GA---AA-TTTCC-T---GC-AAGTTTTTTGG-ATTA-A-GTATT-A-CAAAATTAAT-AAATT----GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA---------------ACAATTCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTT-TT---A-CCGTGGCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGATCTT--GGGATT-----------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATAC-CATATCCTTTAGCTTTT--ACCCG---ATGT--TGGCACACTTTTTTT-------TTTACT---TCCGATCTGGTC-A-TT-T----AT-ACTCAAGCAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT---AGATTTGTACCCTATC-TGCTTattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACAT-GTCA----CTATAA-T--AAAAT--TTT--TGCTTACTTATAGTAGTGAATTCA--TTTTC-TT--GT-CAGTTTT---GGATAA-A-GTCTTTG-CAAATTTA-T-GA--TTTAAAAAAAATAATTGCTTT--TCTTAAT-GTTT-GATTTTTAGGGAAAGGATATTCTCATGATTG--TGTTCACAATACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTT-TC---A-CTGTGGTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GATCTT--GGGATTG--CAT---------T----CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATGC-CACAG-----TGCTTT---CCTTG---GTAT--TA-CA-ACATTCTTTG-----GTTAA-T---TCC-TT-TGGCC-AAT
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATTG--TGATT--TTATAATTGT-AAT-CAA-TTTTCATTCAATGTAGTTTT---GGATTA-A-GTCTTTA-CAAATTAG-T-AA--TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--TT--TT--CACAATACTCAA-CTTTGACA--C----C--T---------GTT-TC---A-CTGGGGCA-G--TA-GAAATTG-G--G-TTCTCTAATCT-ATCGC-AT-TTAAAGTCA-GATCTT--GGGATTG--TAT---------T----CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATGT-CATAG-----AGCTTTC--CCCTG---ATGT--TG-CA-ACTTTCTTTacgtcggttt
gi|7 : ccaatGT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATTG--TGATT--TTATAATTGTGAATTTAA-TTTTA-TT--A---AGTTTG---G-ATTA-A-GTCCATA-CAAAATTG-T-A---T----GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--TG--TT--CACGATACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTT-TT---A-C-GCGCCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT--------ATTG--CA----------T----TC-----------CATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTAT-CATAG-----AGCTTTT--CCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTT-TC---A-AGGTGGCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GATCTA--GAGATTGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA--------ATTAGGGTTTGTAAATGATAT-TCATT------------ATAATTGG-GA----A-TTTTT-TA--GT-T--TTTT---G-AATGTA-GTATTTA-CAAATTCA-T-GA--TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--TGATTG--CAT--TTCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTT-TC---A-AGGTGGCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GATCTA--GAGATTGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATTTTTATTTAAATTGTTCAGAAGCTTTTAACTTTTTCTTCTCTCTGTATTTCAGTATTTTTGAAATCTATTCAACGTTTGGACCAAAATAAATTGTGAAATTTAAAAATTGTGTTTCAATGCGAAACTTCATGTCATTTCCCCAAATTGAACTCTCACAGACCCAATATAATTGCTACA
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Alignments
lowQualScore : 1111 111 222222 111111 2222222222222222 3333333 1111111 111111 111111 1 444444444444444444444444 1111111 1111111 11 11111 5555555555555555555555555555555 11111 22222222222 11111 444444 111 22 333333333333333333 22222 444444444 11 3333333333333333333333 1 111 1 222 111111 1 111 11 1 2222 1
lowQualScore : 0 2222 1 333 999999 222222 0 9999999999999999 5555555 5 6666666 333333 5 5 1 33 5 5 1 000000 3 0 77 0 5 4 00 1 0 777777777777777777777777 5 0 6666666 4 8888888 66 6666 4 00 1 4 4 66 4 88888 0 1 8 99 4 1 8 4 66 66 7777777777777777777777777777777 4 3 0 5 4 0 11111 999 777 2 66 4 4 666 0 55555555555 00000 5 5 5 7777 000000 666 33 6 111111111111111111 00000 6666 8 8 3 1 888888888 33 3333333333333333333333 2 4 666 2 6 555 1 666666 2 7 888 88 2 6666 3 6 7
lowQualScore : . .... . ... ...... ...... . ................ ....... . ....... ...... . . . .. . . . ...... . . .. . . . .. . . ........................ . . ....... . ....... .. .... . .. . . . .. . ..... . . . .. . . . . .. .. ............................... . . . . . . ..... ... ... . .. . . ... . ........... ..... . . . .... ...... ... .. . .................. ..... .... . . . . ......... .. ...................... . . ... . . ... . ...... . . ... .. . .... . . .
lowQualScore : 7 1111 7 777 111111 666666 1 1111111111111111 2222222 0 8888888 999999 0 0 4 55 0 0 0 999999 4 1 99 3 7 1 33 4 4 444444444444444444444444 7 1 2222222 4 3333333 11 4444 4 11 0 4 4 11 4 11111 1 1 9 88 4 0 9 4 11 11 8888888888888888888888888888888 0 6 9 3 4 7 11111 888 888 2 11 4 4 888 9 66666666666 11111 0 0 0 2222 777777 777 11 7 888888888888888888 00000 0000 0 2 8 0 555555555 88 5555555555555555555555 5 0 333 0 7 000 0 333333 0 3 333 33 0 7777 3 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAA-TTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTT-TCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTAAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACT---TT-TGCTTGTG-GTCTG-TCGTTGATAGAATTCAA--CGTTCGGANTTTAATA-A-TAAACTTTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAA-TTTCC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTT-TCACTGNG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--NAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTAAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACT---TT-TGCTTGTGNGTCTG-TCGTTGATAGAATTCAA--CGTTCGGANTTTAATAGA-TAAACTTTGTGAAGACTT--TAAAACGATTGTGTTT-TACATATGGA-ACACTCAAATTA
gi|1 : -------ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCT-TCTCAGCTTGCA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT--AGGAC--TG--CG----------TGAGGCTTGTCATTC-ATTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGG-CA-GTTTGTTTTACTAAA-----GCTCATAA-TTTC-AT-TGGTT-AAGTGTGGAGATTGCA---AAG--GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATT-A-T---TT-TCTTTGTGCGTCTGTTCGTTGATAGAATTCAACGCGTTCATAGTTTAATAGAGTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|12 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATA-CCGTGG-----AGTTTT--CCCCGA---ATTTCCT-G-CA----TTCTGT-----A-----GTTC---A-TTTC-AA-AGGTC----TTT------TACATCCAAGTTAGTTGGAT-CTATCAAAGattccaaattgtaactccatggaaccccataattacta
gi|14 : TGTAATGTACATGT----GCT------ATATA--CAGGGTTTGTAAATGAAAAATCAGT------GTTTTATC--TTATAATTGTGA-TT----TCTCC-CT---T-TA--------G-ATCA-A-TTTTGTATTAGATTTA-TCA-GT---GAAAATTAATTGCTT
gi|15 : tatgtAT-TTTACCATCGTAAATT-ATG-TCAAAA-----AGTTTT--CCCCTA---A-AT--C-A-CA-AATTTTCTT-----C-----GT-------TTCC-AT-CCGTT-AA-Ta
gi|17 : tgctatcagatttctttaT--T-G-CA-GTTTTGTTT-----ACTAAAGTAT---A-TTTC-AT-TGGTT-AA-TTT-GAGA-TGCA--AAGG-
gi|18 : tTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTg
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATT------G--TGATT--TTATAATTGTAA-TTCAAATTTCT-TT--GT-TAGTTTT---G-ATTA-ATGTCTTTA-CAAGTTTG-TAA-T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTT-TCACTTGG-GCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGAT-TTTTTGGGAT--TG--TGATTATATTTTT----CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATG-TCATAG-----AGCTTC--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGATC-AA-TTTG-----TACC--CAGG-TAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT---AAGTTTGTTAACT---TTCTGCTTGTAAAACTC-TTGTTAATA-AATTCTA----TTCGGACTTTA----A-TAAATTTTG-GA--ACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : TATAT-GT-AGGGATTCTAAA-----AATCATTTTTATTG--TTATT--TTATTATTGCGA-TT----TCTTC-TT--GT--AGATT----A-ATTT-G-GTAT----CAAATTCA-TTA-GT---GAAATCCAATTGC-------------GTGTCGG------GGGAGTGCACTGGCACATG--TTGTCG--TTATCAACTTGG--CCACAATTTGTGTTAATAAA-CTTTGACA--C----C--TCTC-TC-TTGTTCTCA--GCT-GCA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GAT-CTT--AGGAC--TG--CG----------T----T-----------TCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATA-TCGTAA-----AGCTTT--ATCCTG---AATT--T-G-CA-GTTGTGTTT-----A-----CTTT---A-TTTC-AT-TGGTTTAA-TTTGAGAA-TGCA--AAAG--GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTT---------AAGAAGCTT-----ATTT-TT-ATT---T----CTTGTG-GTCTG-T-ATT--TAGAATTCAA--CGTTTGGATTATAATATA-TAAA--TTGTGAAA--TT--TGAAAC-ATTGTGTTT-T--ATATGGA-ACA-TC-AATTAtta
gi|4 : TGTACATGT----GTTTTA---ATATAG----GGTTTATAA--------TCATT--------------------AATTGTGA----AA-TTTCC-T---GC-AAGTTTTTTGG-ATTA-A-GTATT-A-CAAAATTAATAAATT---GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA------------------------------ACAAT-------TCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTT-TTACCGTG-GCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGAT-CTT--GGGAT--T-----------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATA-CCATATCCTTTAGCTTT--TACCCG---ATGT--T-GGCACACTTTTTTT------------TTT---ACTTCCGATCTGGTC-A--TTT----A-TACT--CAAG-CAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT---AGATTTG-T-ACCCTATC-TGCTTattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACAT-GTCA----CTATAA-T--AAAAT--TT------T--TGCTTACTTATAGTAGTGAATTCA--TTTTC-TT--GT-CAGTTTT---GGATAA-A-GTCTTTG-CAAATTTA-TGA-TTTAAAAAAAATAATTGCTTT--TCTTAAT-GTTT-GATTTTTAGGGAAAGGATATTCTCATGATT----G--T----------GTTC-ACAAT-------ACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTT-TCACTGTG-GTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GAT-CTT--GGGAT--TG--CAT---------T----CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATG-CCACAG-----TGCTTT---CCTTG---GTAT--T-A-CA-ACATTCTTT-----G-----GTTA---A-TTCC-TT-TGGCC-AA-T
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTAA-T-CAA-TTTTCATTCAATGTAGTTTT---GGATTA-A-GTCTTTA-CAAATTAG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--T----T--T----------T--C-ACAAT-------ACTCAA-CTTTGACA--C----C--T---------GTT-TCACTGGG-GCA-G--TA-GAAATTG-G--G-TTCTCTAATCT-ATCGC-AT-TTAAAGTCA-GAT-CTT--GGGAT--TG--TAT---------T----CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATG-TCATAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----acgtcggttt
gi|7 : ccaatGT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATT------G--TGATT--TTATAATTGTGAATTTAA-TTTTA-TT--A---AGTTTG---G-ATTA-A-GTCCATA-CAAAATTG-TA---T---GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--T----G--T----------T--C-ACGAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTT-TTAC-GCG-CCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT---------AT--TG--CA----------T----TC-----------CATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTA-TCATAG-----AGCTTT--TCCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTT-TCAAGGTG-GCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGAT--TGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA--------ATTAGGGTTTGTAAATGATAT-TCATT------------------ATAATTGGGA-----A-TTTTT-TA--GT-T--TTTT---G-AATGTA-GTATTTA-CAAATTCA-TGA-TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--T----GATT----------G--C-AT--T-------TCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTT-TCAAGGTG-GCA-A--TG-GAAATT--G--GTTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG--CG----------T-----CTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATTTTTATTTAAATTGTTCAGAAGCTTTTAACTTTTTCTTCTCTCTGTATTTCAGTATTTTTGAAATCTATTCAACGTTTGGACCAAAATAAATTGTGAAATTTAAAAATTGTGTTTCAATGCGAAACTTCATGTCATTTCCCCAAATTGAACTCTCACAGACCCAATATAATTGCTACA
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Alignments
lowQualScore : 1111 111 222222 111111 2222222222222222 333333 2222222 111111 111111 1 444444444444444444444444 1111111 1111111 11111 5555555555555555555555555555555 11111 22222222222 11111 444444 222 22 333333333333333333 22222 555555555555555555555555555555555555555555 2222 1111 333333333333333333 111 333333333 22 2222 11 11 1111 1
lowQualScore : 0 2222 1 333 999999 222222 0 9999999999999999 000000 5 1111111 333333 5 5 1 33 5 5 1 000000 3 0 77 0 5 4 00 1 0 777777777777777777777777 5 0 6666666 4 8888888 66 6666 5 2 4 4 66 4 88888 0 1 8 99 4 1 8 4 66 66 7777777777777777777777777777777 4 3 0 5 4 0 11111 999 777 2 66 4 4 666 0 55555555555 00000 5 5 5 7777 000000 000 33 6 111111111111111111 00000 1 888 7 33 1 000000000000000000000000000000000000000000 6666 4444 666666666666666666 666 1 111111111 22 3 5555 33 99 8888 0 6 7
lowQualScore : . .... . ... ...... ...... . ................ ...... . ....... ...... . . . .. . . . ...... . . .. . . . .. . . ........................ . . ....... . ....... .. .... . . . . .. . ..... . . . .. . . . . .. .. ............................... . . . . . . ..... ... ... . .. . . ... . ........... ..... . . . .... ...... ... .. . .................. ..... . ... . .. . .......................................... .... .... .................. ... . ......... .. . .... .. .. .... . . .
lowQualScore : 7 1111 7 777 111111 666666 1 1111111111111111 222222 0 8888888 999999 0 0 4 55 0 0 0 999999 4 1 99 3 7 1 33 4 4 444444444444444444444444 7 1 2222222 4 3333333 11 4444 3 7 4 4 11 4 11111 1 1 9 88 4 0 9 4 11 11 8888888888888888888888888888888 0 6 9 3 4 7 11111 888 888 2 11 4 4 888 9 66666666666 11111 0 0 0 2222 777777 000 11 7 888888888888888888 00000 7 888 8 55 0 888888888888888888888888888888888888888888 8888 0000 222222222222222222 222 0 000000000 00 2 5555 88 22 0000 0 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACT---TT-TNCTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTAAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACT---TT-TGCTTGT-G-GTCTG-TCGTTGA-TA-----GAA-----TTCAA--CGTTCGGANTTTAAT--A-ATAAACTTTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
gi|1 : -------ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCTTCTCAGCTTGCA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT--AGGAC--TG--CG----------TGAGGCTTGTCATTC-ATTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGG-CA-GTTTGTTTTACTAAA-----GCTCATAA-TTTC-AT-TGGTT-AAGTGTGGAGATTGCA---AAG--GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATT-A-T---TT-TCTTTGT-GCGTCTGTTCGTTGA-TA-----GAA-----TTCAACGCGTTCATAGTTTAATAGA-GTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|10 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaAAAT---TTTTATTTAAATTGTT-C-----A-GAA----------GCTTT-TA-ACT---TT-TTCTTCT-C--TCTG-TATTTCAGTATTTTTGAAATCTATTCAA--CGTTTGGACC--AA---A-ATAAA--TTGTGAAA--TT--TAAAA--ATTGTGTTT-CA-ATGCGAA-ACattccaaattgtaactccatggaaccccataattacta
gi|12 : ATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATA-CCGTGG-----AGTTTT--CCCCGA---ATTTCCT-G-CA----TTCTGT-----A-----GTTC---A-TTTC-AA-AGGTC----TTT------TACATCCAAGTTAGTTGGAT-CTATCAAAGttcatgtcatttccccaaattgaactctcacagacccaatataattgctaca
gi|14 : TGTAATGTACATGT----GCT------ATATA--CAGGGTTTGTAAATGAAAAATCAGT------GTTTTATC--TTATAATTGTGA-TT---TCTCC-CT---T-TA--------G-ATCA-A-TTTTGTATTAGATTTA-TCA-GT---GAAAATTAATTGCTT
gi|15 : tatgtAT-TTTACCATCGTAAATT-ATG-TCAAAA-----AGTTTT--CCCCTA---A-AT--C-A-CA-AATTTTCTT-----C-----GT-------TTCC-AT-CCGTT-AA-Ta
gi|17 : tgctatcagatttctttaT--T-G-CA-GTTTTGTTT-----ACTAAAGTAT---A-TTTC-AT-TGGTT-AA-TTT-GAGA-TGCA---AAG-
gi|18 : tTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTgg
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATT------G--TGATT--TTATAATTGTAA-TTCAAATTTC-TTT-GT-TAGTTTT---G-ATTA-ATGTCTTTA-CAAGTTTG-TAA-T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTTTCACTTGG-GCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGAT-TTTTTGGGAT--TG--TGATTATATTTTT----CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATG-TCATAG-----AGCTTC--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGATC-AA-TTTG-----TACC--CAGG-TAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT---AAGTTTGTTAACT---TTCTGCTTGTAA-AACTC-TTGTTAA-TA------AA-----TTCTA----TTCGGACTT---T--A-ATAAATTTTG-GA--ACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : TATAT-GT-AGGGATTCTAAA-----AATCATTTTTATTG--TTATT--TTATTATTGCGA-TT---TCTTC-TT--GT--AGATT----A-ATTT-G-GTAT----CAAATTCA-TTA-GT---GAAATCCAATTGC-------------GTGTCGG------GGGAGTGCACTGGCACATG--TTGTCG--TTATCAACTTGG--CCACAATTTGTGTTAATAAA-CTTTGACA--C----C--TCTC-TC-TTGTT-CTCAGCT-GCA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GAT-CTT--AGGAC--TG--CG----------T----T-----------TCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATA-TCGTAA-----AGCTTT--ATCCTG---AATT--T-G-CA-GTTGTGTTT-----A-----CTTT---A-TTTC-AT-TGGTTTAA-TTTGAGAA-TGCA--AAAG--GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTT---------AAGAAGCTT-----ATTT-TT-ATT---T----CTTGT-G-GTCTG-T-ATT---TA-----GAA-----TTCAA--CGTTTGGATTATAAT--ATATAAA--TTGTGAAA--TT--TGAAAC-ATTGTGTTT-T--ATATGGA-ACA-TC-AATTAtta
gi|4 : TGTACATGT----GTTTTA---ATATAG----GGTTTATAA--------TCATT--------------------AATTGTGA----AATTTCC-T---GC-AAGTTTTTTGG-ATTA-A-GTATT-A-CAAAATTAATAAATT---GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA------------------------------ACAAT-------TCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTTTTACCGTG-GCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGAT-CTT--GGGAT--T-----------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATA-CCATATCCTTTAGCTTT--TACCCG---ATGT--T-GGCACACTTTTTTT------------TTT---ACTTCCGATCTGGTC-A--TTT----A-TACT--CAAG-CAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT---AGATTTG-T-ACCCTATC-TGCTTattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACAT-GTCA----CTATAA-T--AAAAT--TT------T--TGCTTACTTATAGTAGTGAATTCA-TTTTC-TT--GT-CAGTTTT---GGATAA-A-GTCTTTG-CAAATTTA-TGA-TTTAAAAAAAATAATTGCTTT--TCTTAAT-GTTT-GATTTTTAGGGAAAGGATATTCTCATGATT----G--T----------GTTC-ACAAT-------ACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTTTCACTGTG-GTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GAT-CTT--GGGAT--TG--CAT---------T----CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATG-CCACAG-----TGCTTT---CCTTG---GTAT--T-A-CA-ACATTCTTT-----G-----GTTA---A-TTCC-TT-TGGCC-AA-T
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTAA-T-CAATTTTCATTCAATGTAGTTTT---GGATTA-A-GTCTTTA-CAAATTAG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--T----T--T----------T--C-ACAAT-------ACTCAA-CTTTGACA--C----C--T---------GTTTCACTGGG-GCA-G--TA-GAAATTG-G--GTT-CTCTAATCT-ATCGC-AT-TTAAAGTCA-GAT-CTT--GGGAT--TG--TA----------TT---CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATG-TCATAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----acgtcggttt
gi|7 : ccaatGT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATT------G--TGATT--TTATAATTGTGAATTTAATTTTA-TT--A---AGTTTG---G-ATTA-A-GTCCATA-CAAAATTG-TA---T---GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--T----G--T----------T--C-ACGAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTTAC-GCG-CCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT---------AT--TG--CA----------T----TC-----------CATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTA-TCATAG-----AGCTTT--TCCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGAT--TGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA--------ATTAGGGTTTGTAAATGATAT-TCATT------------------ATAATTGGGA-----ATTTTT-TA--GT-T--TTTT---G-AATGTA-GTATTTA-CAAATTCA-TGA-TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--T----GATT----------G--C-AT--T-------TCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATT--G--GTTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG--CG----------T-----CTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Alignments
lowQualScore : 1111 111 222222 111111 2222222222222222 333333 2222222 111111 111111 1 444444444444444444444444 1111111 1111111 11111 5555555555555555555555555555555 11111 22222222222 11111 444444 222 22 333333333333333333 22222 444444444444444444444444444444444 1 2222 1111 111 3333333333333 111 22222222222 22 11 11 11 1111 1
lowQualScore : 0 2222 1 333 999999 222222 0 9999999999999999 000000 5 1111111 333333 5 5 1 33 5 5 1 000000 3 0 77 0 5 4 00 1 0 777777777777777777777777 5 0 6666666 4 8888888 66 6666 5 2 4 4 66 4 88888 0 1 8 99 4 1 8 4 66 66 7777777777777777777777777777777 4 3 0 5 4 0 11111 999 777 2 66 4 4 666 0 55555555555 00000 5 5 5 7777 000000 000 33 6 111111111111111111 00000 1 888 7 22 1 444444444444444444444444444444444 0 1 6666 4444 777 4444444444444 666 66666666666 22 3 88 33 99 8888 0 6 7
lowQualScore : . .... . ... ...... ...... . ................ ...... . ....... ...... . . . .. . . . ...... . . .. . . . .. . . ........................ . . ....... . ....... .. .... . . . . .. . ..... . . . .. . . . . .. .. ............................... . . . . . . ..... ... ... . .. . . ... . ........... ..... . . . .... ...... ... .. . .................. ..... . ... . .. . ................................. . . .... .... ... ............. ... ........... .. . .. .. .. .... . . .
lowQualScore : 7 1111 7 777 111111 666666 1 1111111111111111 222222 0 8888888 999999 0 0 4 55 0 0 0 999999 4 1 99 3 7 1 33 4 4 444444444444444444444444 7 1 2222222 4 3333333 11 4444 3 7 4 4 11 4 11111 1 1 9 88 4 0 9 4 11 11 8888888888888888888888888888888 0 6 9 3 4 7 11111 888 888 2 11 4 4 888 9 66666666666 11111 0 0 0 2222 777777 000 11 7 888888888888888888 00000 7 888 8 77 0 555555555555555555555555555555555 0 0 8888 0000 888 5555555555555 222 00000000000 00 2 00 88 22 0000 0 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTT-TTCTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTT-TNCTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
gi|1 : -------ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCTTCTCAGCTTGCA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT--AGGAC--TG--CG----------TGAGGCTTGTCATTC-ATTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGG-CA-GTTTGTTTTACTAAA-----GCTCATAA-TTTC-AT-TGGTT-AAGTGTGGAGATTGCA---AAG--GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATT-A-TTT-TCTTTGT-GCGTCTGTTCGTTGA-TA-----GAA-----TTCAACGCGTTCATAGTTTAATAGA-GTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|10 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaAAAT---TTTTATTTAAATTGTT-C-----A-GAA----------GCTTT-TA-ACTTT-TTCTTCT-C--TCTG-TATTTCAGTATTTTTGAAATCTATTCAA--CGTTTGGAC--CAA---A-ATAAA--TTGTGAAA--TT--TAAAA--ATTGTGTTT-CA-ATGCGAA-ACattccaaattgtaactccatggaaccccataattacta
gi|12 : ATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATA-CCGTGG-----AGTTTT--CCCCGA---ATTTCCT-G-CA----TTCTGT-----A-----GTTC---A-TTTC-AA-AGGTC----TTT------TACATCCAAGTTAGTTGGAT-CTATCAAAGttcatgtcatttccccaaattgaactctcacagacccaatataattgctaca
gi|14 : TGTAATGTACATGT----GCT------ATATA--CAGGGTTTGTAAATGAAAAATCAGT------GTTTTATC--TTATAATTGTGA-TT---TCTCC-CT---T-TA--------G-ATCA-A-TTTTGTATTAGATTTA-TCA-GT---GAAAATTAATTGCTT
gi|15 : tatgtAT-TTTACCATCGTAAATT-ATG-TCAAAA-----AGTTTT--CCCCTA---A-AT--C-A-CA-AATTTTCTT-----C-----GT-------TTCC-AT-CCGTT-AA-Ta
gi|17 : tgctatcagatttctttaT--T-G-CA-GTTTTGTTT-----ACTAAAGTAT---A-TTTC-AT-TGGTT-AA-TTT-GAGA-TGCA---AAG-
gi|18 : tTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTgg
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATT------G--TGATT--TTATAATTGTAA-TTCAAATTTC-TTT-GT-TAGTTTT---G-ATTA-ATGTCTTTA-CAAGTTTG-TAA-T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTTTCACTTGG-GCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGAT-TTTTTGGGAT--TG--TGATTATATTTTT----CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATG-TCATAG-----AGCTTC--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGATC-AA-TTTG-----TACC--CAGG-TAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT---AAGTTTGTTAACTTTCTGCTTGTAA-AACTC-TTGTTAA-TA------AA-----TTCTA----TTCGGACTT---T--A-ATAAATTTTG---GAACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : TATAT-GT-AGGGATTCTAAA-----AATCATTTTTATTG--TTATT--TTATTATTGCGA-TT---TCTTC-TT--GT--AGATT----A-ATTT-G-GTAT----CAAATTCA-TTA-GT---GAAATCCAATTGC-------------GTGTCGG------GGGAGTGCACTGGCACATG--TTGTCG--TTATCAACTTGG--CCACAATTTGTGTTAATAAA-CTTTGACA--C----C--TCTC-TC-TTGTT-CTCAGCT-GCA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GAT-CTT--AGGAC--TG--CG----------T----T-----------TCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATA-TCGTAA-----AGCTTT--ATCCTG---AATT--T-G-CA-GTTGTGTTT-----A-----CTTT---A-TTTC-AT-TGGTTTAA-TTTGAGAA-TGCA--AAAG--GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTT---------AAGAAGCTT-----ATTT-TT-A---T-TTCTTGT-G-GTCTG-T-ATT---TA-----GAA-----TTCAA--CGTTTGGATTATAAT--ATATAAA--TTGTGAAA--TT--TGAAAC-ATTGTGTTT-T--ATATGGA-ACA-TC-AATTAtta
gi|4 : TGTACATGT----GTTTTA---ATATAG----GGTTTATAA--------TCATT--------------------AATTGTGA----AATTTCC-T---GC-AAGTTTTTTGG-ATTA-A-GTATT-A-CAAAATTAATAAATT---GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA------------------------------ACAAT-------TCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTTTTACCGTG-GCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGAT-CTT--GGGAT--T-----------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATA-CCATATCCTTTAGCTTT--TACCCG---ATGT--T-GGCACACTTTTTTT------------TTT---ACTTCCGATCTGGTC-A--TTT----A-TACT--CAAG-CAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT---AGATTTGTattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACAT-GTCA----CTATAA-T--AAAAT--TT------T--TGCTTACTTATAGTAGTGAATTCA-TTTTC-TT--GT-CAGTTTT---GGATAA-A-GTCTTTG-CAAATTTA-TGA-TTTAAAAAAAATAATTGCTTT--TCTTAAT-GTTT-GATTTTTAGGGAAAGGATATTCTCATGATT----G--T----------GTTC-ACAAT-------ACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTTTCACTGTG-GTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GAT-CTT--GGGAT--TG--CAT---------T----CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATG-CCACAG-----TGCTTT---CCTTG---GTAT--T-A-CA-ACATTCTTT-----G-----GTTA---A-TTCC-TT-TGGCC-AA-Taccctatctgctt
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTAA-T-CAATTTTCATTCAATGTAGTTTT---GGATTA-A-GTCTTTA-CAAATTAG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--T----T--T----------T--C-ACAAT-------ACTCAA-CTTTGACA--C----C--T---------GTTTCACTGGG-GCA-G--TA-GAAATTG-G--GTT-CTCTAATCT-ATCGC-AT-TTAAAGTCA-GAT-CTT--GGGAT--TG--TA----------TT---CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATG-TCATAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----acgtcggttt
gi|7 : ccaatGT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATT------G--TGATT--TTATAATTGTGAATTTAATTTTA-TT--A---AGTTTG---G-ATTA-A-GTCCATA-CAAAATTG-TA---T---GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--T----G--T----------T--C-ACGAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTTAC-GCG-CCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT---------AT--TG--CA----------T----TC-----------CATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTA-TCATAG-----AGCTTT--TCCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGAT--TGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA--------ATTAGGGTTTGTAAATGATAT-TCATT------------------ATAATTGGGA-----ATTTTT-TA--GT-T--TTTT---G-AATGTA-GTATTTA-CAAATTCA-TGA-TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--T----GATT----------G--C-AT--T-------TCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATT--G--GTTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG--CG----------T-----CTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Alignments
lowQualScore : 1111 111 222222 111111 2222222222222222 333333 2222222 111111 111111 1 444444444444444444444444 1111111 1111111 11111 5555555555555555555555555555555 11111 22222222222 11111 444444 222 22 333333333333333333 22222 444444444444444444444444444444444 2222 1111 111 3333333333333 111 22222222222 22 11 11 11 1111 1
lowQualScore : 0 2222 1 333 999999 222222 0 9999999999999999 000000 5 1111111 333333 5 5 1 33 5 5 1 000000 3 0 77 0 5 4 00 1 0 777777777777777777777777 5 0 6666666 4 8888888 66 6666 5 2 4 4 66 4 88888 0 1 8 99 4 1 8 4 66 66 7777777777777777777777777777777 4 3 0 5 4 0 11111 999 777 2 66 4 4 666 0 55555555555 00000 5 5 5 7777 000000 000 33 6 111111111111111111 00000 1 888 7 22 1 666666666666666666666666666666666 8 6666 4444 777 4444444444444 666 66666666666 22 3 88 33 99 8888 0 6 7
lowQualScore : . .... . ... ...... ...... . ................ ...... . ....... ...... . . . .. . . . ...... . . .. . . . .. . . ........................ . . ....... . ....... .. .... . . . . .. . ..... . . . .. . . . . .. .. ............................... . . . . . . ..... ... ... . .. . . ... . ........... ..... . . . .... ...... ... .. . .................. ..... . ... . .. . ................................. . .... .... ... ............. ... ........... .. . .. .. .. .... . . .
lowQualScore : 7 1111 7 777 111111 666666 1 1111111111111111 222222 0 8888888 999999 0 0 4 55 0 0 0 999999 4 1 99 3 7 1 33 4 4 444444444444444444444444 7 1 2222222 4 3333333 11 4444 3 7 4 4 11 4 11111 1 1 9 88 4 0 9 4 11 11 8888888888888888888888888888888 0 6 9 3 4 7 11111 888 888 2 11 4 4 888 9 66666666666 11111 0 0 0 2222 777777 000 11 7 888888888888888888 00000 7 888 8 77 0 000000000000000000000000000000000 0 8888 0000 888 5555555555555 222 00000000000 00 2 00 88 22 0000 0 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTTTT-CTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTTTT-CTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
gi|1 : -------ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCTTCTCAGCTTGCA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT--AGGAC--TG--CG----------TGAGGCTTGTCATTC-ATTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGG-CA-GTTTGTTTTACTAAA-----GCTCATAA-TTTC-AT-TGGTT-AAGTGTGGAGATTGCA---AAG--GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATT-A-TTTTC-TTTGT-GCGTCTGTTCGTTGA-TA-----GAA-----TTCAACGCGTTCATAGTTTAATAGA-GTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|10 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaAAAT---TTTTATTTAAATTGTT-C-----A-GAA----------GCTTT-TA-ACTTTTT-CTTCT-C--TCTG-TATTTCAGTATTTTTGAAATCTATTCAA--CGTTTGGAC--CAA---A-ATAAA--TTGTGAAA--TT--TAAAA--ATTGTGTTT-CA-ATGCGAA-ACattccaaattgtaactccatggaaccccataattacta
gi|12 : ATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATA-CCGTGG-----AGTTTT--CCCCGA---ATTTCCT-G-CA----TTCTGT-----A-----GTTC---A-TTTC-AA-AGGTC----TTT------TACATCCAAGTTAGTTGGAT-CTATCAAAGttcatgtcatttccccaaattgaactctcacagacccaatataattgctaca
gi|14 : TGTAATGTACATGT----GCT------ATATA--CAGGGTTTGTAAATGAAAAATCAGT------GTTTTATC--TTATAATTGTGA-TT---TCTCC-CT---T-TA--------G-ATCA-A-TTTTGTATTAGATTTA-TCA-GT---GAAAATTAATTGCTT
gi|15 : tatgtAT-TTTACCATCGTAAATT-ATG-TCAAAA-----AGTTTT--CCCCTA---A-AT--C-A-CA-AATTTTCTT-----C-----GT-------TTCC-AT-CCGTT-AA-Ta
gi|17 : tgctatcagatttctttaT--T-G-CA-GTTTTGTTT-----ACTAAAGTAT---A-TTTC-AT-TGGTT-AA-TTT-GAGA-TGCA---AAG-
gi|18 : tTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTgg
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATT------G--TGATT--TTATAATTGTAA-TTCAAATTTC-TTT-GT-TAGTTTT---G-ATTA-ATGTCTTTA-CAAGTTTG-TAA-T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTTTCACTTGG-GCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGAT-TTTTTGGGAT--TG--TGATTATATTTTT----CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATG-TCATAG-----AGCTTC--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGATC-AA-TTTG-----TACC--CAGG-TAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT---AAGTTTGTTAACTTTCTGCTTGTAA-AACTC-TTGTTAA-TA------AA-----TTCTA----TTCGGACTT---T--A-ATAAATTTTG---GAACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : TATAT-GT-AGGGATTCTAAA-----AATCATTTTTATTG--TTATT--TTATTATTGCGA-TT---TCTTC-TT--GT--AGATT----A-ATTT-G-GTAT----CAAATTCA-TTA-GT---GAAATCCAATTGC-------------GTGTCGG------GGGAGTGCACTGGCACATG--TTGTCG--TTATCAACTTGG--CCACAATTTGTGTTAATAAA-CTTTGACA--C----C--TCTC-TC-TTGTT-CTCAGCT-GCA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GAT-CTT--AGGAC--TG--CG----------T----T-----------TCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATA-TCGTAA-----AGCTTT--ATCCTG---AATT--T-G-CA-GTTGTGTTT-----A-----CTTT---A-TTTC-AT-TGGTTTAA-TTTGAGAA-TGCA--AAAG--GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTT---------AAGAAGCTT-----ATTT-TT-A---TTT-CTTGT-G-GTCTG-T-ATT---TA-----GAA-----TTCAA--CGTTTGGATTATAAT--ATATAAA--TTGTGAAA--TT--TGAAAC-ATTGTGTTT-T--ATATGGA-ACA-TC-AATTAtta
gi|4 : TGTACATGT----GTTTTA---ATATAG----GGTTTATAA--------TCATT--------------------AATTGTGA----AATTTCC-T---GC-AAGTTTTTTGG-ATTA-A-GTATT-A-CAAAATTAATAAATT---GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA------------------------------ACAAT-------TCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTTTTACCGTG-GCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGAT-CTT--GGGAT--T-----------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATA-CCATATCCTTTAGCTTT--TACCCG---ATGT--T-GGCACACTTTTTTT------------TTT---ACTTCCGATCTGGTC-A--TTT----A-TACT--CAAG-CAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT---AGATTTG-T-ACCCTAT-CTattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACAT-GTCA----CTATAA-T--AAAAT--TT------T--TGCTTACTTATAGTAGTGAATTCA-TTTTC-TT--GT-CAGTTTT---GGATAA-A-GTCTTTG-CAAATTTA-TGA-TTTAAAAAAAATAATTGCTTT--TCTTAAT-GTTT-GATTTTTAGGGAAAGGATATTCTCATGATT----G--T----------GTTC-ACAAT-------ACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTTTCACTGTG-GTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GAT-CTT--GGGAT--TG--CAT---------T----CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATG-CCACAG-----TGCTTT---CCTTG---GTAT--T-A-CA-ACATTCTTT-----G-----GTTA---A-TTCC-TT-TGGCC-AA-Tgctt
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTAA-T-CAATTTTCATTCAATGTAGTTTT---GGATTA-A-GTCTTTA-CAAATTAG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--T----T--T----------T--C-ACAAT-------ACTCAA-CTTTGACA--C----C--T---------GTTTCACTGGG-GCA-G--TA-GAAATTG-G--GTT-CTCTAATCT-ATCGC-AT-TTAAAGTCA-GAT-CTT--GGGAT--TG--TA----------TT---CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATG-TCATAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----acgtcggttt
gi|7 : ccaatGT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATT------G--TGATT--TTATAATTGTGAATTTAATTTTA-TT--A---AGTTTG---G-ATTA-A-GTCCATA-CAAAATTG-TA---T---GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--T----G--T----------T--C-ACGAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTTAC-GCG-CCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT---------AT--TG--CA----------T----TC-----------CATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTA-TCATAG-----AGCTTT--TCCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGAT--TGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA--------ATTAGGGTTTGTAAATGATAT-TCATT------------------ATAATTGGGA-----ATTTTT-TA--GT-T--TTTT---G-AATGTA-GTATTTA-CAAATTCA-TGA-TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--T----GATT----------G--C-AT--T-------TCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATT--G--GTTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG--CG----------T-----CTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Alignments
lowQualScore : 1111 111 222222 111111 2222222222222222 333333 2222222 111111 111111 1 444444444444444444444444 1111111 1111111 11111 5555555555555555555555555555555 11111 22222222222 11111 444444 222 22 333333333333333333 22222 444444444444444444444444444444444 2222 1111 111 3333333333333 111 22222222222 22 11 11 11 1111 1
lowQualScore : 0 2222 1 333 999999 222222 0 9999999999999999 000000 5 1111111 333333 5 5 1 33 5 5 1 000000 3 0 77 0 5 4 00 1 0 777777777777777777777777 5 0 6666666 4 8888888 66 6666 5 2 4 4 66 4 88888 0 1 8 99 4 1 8 4 66 66 7777777777777777777777777777777 4 3 0 5 4 0 11111 999 777 2 66 4 4 666 0 55555555555 00000 5 5 5 7777 000000 000 33 6 111111111111111111 00000 1 888 7 22 1 666666666666666666666666666666666 8 6666 4444 777 4444444444444 666 66666666666 22 3 88 33 99 8888 0 6 7
lowQualScore : . .... . ... ...... ...... . ................ ...... . ....... ...... . . . .. . . . ...... . . .. . . . .. . . ........................ . . ....... . ....... .. .... . . . . .. . ..... . . . .. . . . . .. .. ............................... . . . . . . ..... ... ... . .. . . ... . ........... ..... . . . .... ...... ... .. . .................. ..... . ... . .. . ................................. . .... .... ... ............. ... ........... .. . .. .. .. .... . . .
lowQualScore : 7 1111 7 777 111111 666666 1 1111111111111111 222222 0 8888888 999999 0 0 4 55 0 0 0 999999 4 1 99 3 7 1 33 4 4 444444444444444444444444 7 1 2222222 4 3333333 11 4444 3 7 4 4 11 4 11111 1 1 9 88 4 0 9 4 11 11 8888888888888888888888888888888 0 6 9 3 4 7 11111 888 888 2 11 4 4 888 9 66666666666 11111 0 0 0 2222 777777 000 11 7 888888888888888888 00000 7 888 8 77 0 000000000000000000000000000000000 0 8888 0000 888 5555555555555 222 00000000000 00 2 00 88 22 0000 0 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTTTT-CTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTTTT-CTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
gi|1 : -------ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCTTCTCAGCTTGCA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT--AGGAC--TG--CG----------TGAGGCTTGTCATTC-ATTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGG-CA-GTTTGTTTTACTAAA-----GCTCATAA-TTTC-AT-TGGTT-AAGTGTGGAGATTGCA---AAG--GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TT---CCGAAATTTTTAT-----GTACAAA--TTGTGAGAAGCATT-A-TTTTC-TTTGT-GCGTCTGTTCGTTGA-TA-----GAA-----TTCAACGCGTTCATAGTTTAATAGA-GTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|10 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaAAAT---TTTTATTTAAATTGTT-C-----A-GAA----------GCTTT-TA-ACTTTTT-CTTCT-C--TCTG-TATTTCAGTATTTTTGAAATCTATTCAA--CGTTTGGAC--CAA---A-ATAAA--TTGTGAAA--TT--TAAAA--ATTGTGTTT-CA-ATGCGAA-ACattccaaattgtaactccatggaaccccataattacta
gi|12 : ATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATA-CCGTGG-----AGTTTT--CCCCGA---ATTTCCT-G-CA----TTCTGT-----A-----GTTC---A-TTTC-AA-AGGTC----TTT------TACATCCAAGTTAGTTGGAT-CTATCAAAGttcatgtcatttccccaaattgaactctcacagacccaatataattgctaca
gi|14 : TGTAATGTACATGT----GCT------ATATA--CAGGGTTTGTAAATGAAAAATCAGT------GTTTTATC--TTATAATTGTGA-TT---TCTCC-CT---T-TA--------G-ATCA-A-TTTTGTATTAGATTTA-TCA-GT---GAAAATTAATTGCTT
gi|15 : tatgtAT-TTTACCATCGTAAATT-ATG-TCAAAA-----AGTTTT--CCCCTA---A-AT--C-A-CA-AATTTTCTT-----C-----GT-------TTCC-AT-CCGTT-AA-Ta
gi|17 : tgctatcagatttctttaT--T-G-CA-GTTTTGTTT-----ACTAAAGTAT---A-TTTC-AT-TGGTT-AA-TTT-GAGA-TGCA---AAG-
gi|18 : tTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATTgg
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGTTAGGGTTTGTAAAT-AATAATCATT------G--TGATT--TTATAATTGTAA-TTCAAATTTC-TTT-GT-TAGTTTT---G-ATTA-ATGTCTTTA-CAAGTTTG-TAA-T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTTTCACTTGG-GCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGAT-TTTTTGGGAT--TG--TGATTATATTTTT----CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATG-TCATAG-----AGCTTC--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGATC-AA-TTTG-----TACC--CAGG-TAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTT-T-----G-AAAAA--TT---AAGTTTGTTAACTTTCTGCTTGTAA-AACTC-TTGTTAA-TA------AA-----TTCTA----TTCGGACTT---T--A-ATAAATTTTG---GAACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : TATAT-GT-AGGGATTCTAAA-----AATCATTTTTATTG--TTATT--TTATTATTGCGA-TT---TCTTC-TT--GT--AGATT----A-ATTT-G-GTAT----CAAATTCA-TTA-GT---GAAATCCAATTGC-------------GTGTCGG------GGGAGTGCACTGGCACATG--TTGTCG--TTATCAACTTGG--CCACAATTTGTGTTAATAAA-CTTTGACA--C----C--TCTC-TC-TTGTT-CTCAGCT-GCA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GAT-CTT--AGGAC--TG--CG----------T----T-----------TCATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATA-TCGTAA-----AGCTTT--ATCCTG---AATT--T-G-CA-GTTGTGTTT-----A-----CTTT---A-TTTC-AT-TGGTTTAA-TTTGAGAA-TGCA--AAAG--GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTT---------AAGAAGCTT-----ATTT-TT-A---TTT-CTTGT-G-GTCTG-T-ATT---TA-----GAA-----TTCAA--CGTTTGGATTATAAT--ATATAAA--TTGTGAAA--TT--TGAAAC-ATTGTGTTT-T--ATATGGA-ACA-TC-AATTAtta
gi|4 : TGTACATGT----GTTTTA---ATATAG----GGTTTATAA--------TCATT--------------------AATTGTGA----AATTTCC-T---GC-AAGTTTTTTGG-ATTA-A-GTATT-A-CAAAATTAATAAATT---GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA------------------------------ACAAT-------TCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTTTTACCGTG-GCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGAT-CTT--GGGAT--T-----------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATA-CCATATCCTTTAGCTTT--TACCCG---ATGT--T-GGCACACTTTTTTT------------TTT---ACTTCCGATCTGGTC-A--TTT----A-TACT--CAAG-CAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATT-TAAAAGA-AAAAA--TT---AGATTTG-T-ACCCTAT-CTattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACAT-GTCA----CTATAA-T--AAAAT--TT------T--TGCTTACTTATAGTAGTGAATTCA-TTTTC-TT--GT-CAGTTTT---GGATAA-A-GTCTTTG-CAAATTTA-TGA-TTTAAAAAAAATAATTGCTTT--TCTTAAT-GTTT-GATTTTTAGGGAAAGGATATTCTCATGATT----G--T----------GTTC-ACAAT-------ACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTTTCACTGTG-GTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GAT-CTT--GGGAT--TG--CAT---------T----CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATG-CCACAG-----TGCTTT---CCTTG---GTAT--T-A-CA-ACATTCTTT-----G-----GTTA---A-TTCC-TT-TGGCC-AA-Tgctt
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATAG----GGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTAA-T-CAATTTTCATTCAATGTAGTTTT---GGATTA-A-GTCTTTA-CAAATTAG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--T----T--T----------T--C-ACAAT-------ACTCAA-CTTTGACA--C----C--T---------GTTTCACTGGG-GCA-G--TA-GAAATTG-G--GTT-CTCTAATCT-ATCGC-AT-TTAAAGTCA-GAT-CTT--GGGAT--TG--TA----------TT---CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATG-TCATAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----acgtcggttt
gi|7 : ccaatGT----GTTTTACATATATAGT----GTTTGTAAATGAAAAAGCATT------G--TGATT--TTATAATTGTGAATTTAATTTTA-TT--A---AGTTTG---G-ATTA-A-GTCCATA-CAAAATTG-TA---T---GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--T----G--T----------T--C-ACGAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTTAC-GCG-CCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT---------AT--TG--CA----------T----TC-----------CATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTA-TCATAG-----AGCTTT--TCCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGAT--TGTGCG----------T----C-TTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA--------ATTAGGGTTTGTAAATGATAT-TCATT------------------ATAATTGGGA-----ATTTTT-TA--GT-T--TTTT---G-AATGTA-GTATTTA-CAAATTCA-TGA-TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--T----GATT----------G--C-AT--T-------TCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATT--G--GTTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG--CG----------T-----CTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
blockSeqs : ACAT T TAT AGTTAG ATGAAA TTTATTGTTATT ATTTAA A TCAATGT TTTGG T T C TT . A A TTTAA A TA T C G TTGTCGTTATCAACTTGG C TTGTGTT . GACGATA AA TC T G . C AC T TACT C T CC A A C . TT TG TGATTATATTTTTCCTTTGATTTGG A C A . CCTTT C . T CC . G CAC ACTAAA TC C G C TAA GAGAA TCC TT T AACACGCC GGTAG A AAT T TT G TAAAAGAAAAAATTAGATTTGTAC G AAA TAT CAG TTTTTGAAATCTA C TTATAATAT TT T AC AG TA CTAC T C A
blockSeqs : . T TAC ATTAG ATGAAA TTGCTTAC TTCAA . TTGTT TGG . . A TT . . T ATT C . . T T ATTGTGTT . . . C . TC A C . . . . GG C T G . T A . . . TATTCCTTTGATTTGG . . T . . C . A . . . AA A AT . . . AA GAGA C T . GCACGGTG . A CA G TA C TGAAAAATTAAGTTTGTTAAC . GG TTG AA GAA C CCAAA . T . . C CA . . .
blockSeqs : . A TAT GTAG ATGATA GTGATT ATTCA . TGTC TGG . . A TT . . A GT A . . T T TGATTG . . . C . TC C T . . . . GC A . C . A . . . . TGCGTCTTTGATTTGG . . A . . C . G . . . GT C TT . . . AA G A C . ACG . A CA C TA G AAGAAGCTTATTTTTA . C TA . AA . CTTTA . . . . . T .
blockSeqs : . T CAT GTCA ATAAT GTGATT TCAA . AGTT TG . . C AT . . G TT A . . . T TTTT . . . A . TT T T . . . . GG A . C . A . . . . CGTCTTTGATTTGG . . A . . A . T . . . AC A TT . . . AA A C . . ACG . A AA T TC A CAGAAGCTTTTAAC .
blockSeqs : . T . AGT TAA GTGATT TT . TGT GG . . C TT . . A TT A . . . T TGTT . . . C . TC T G . . . . GG C . C . A . . . . CATTCCTTTG . . T . . T . G . . . GT A TT . . . AA . . . ACG . . C A
blockSeqs : . T . AG A . AA . GCA TG . . C T . . A T A . . . T . . . . C . AT G C . . . . G C . A . A . . . . CATTC . . T . . C . A . . . AC G TA . . . A
blockSeqs : AG . . A . TA A . . A . . . G T . . . A . AT G T . . . . G A . A . T . . . . CGTT . . G . . T . G . . . AC . . . . . .
blockSeqs : . A . . . T . . . . G A . . . T . . . . TGT . . . . . . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : TAT ATTAG* GTGATT********** TGG*** C****** TC** GG*** CGTTCCTTTGATTTGG*************** C** *** A********** TT*** AA** GA**** C** C* ACG*************** CAAAAAATTAGTTTTTAAC**************
originalCons : ATGTCATGTACGTGT----GTTTTATATATATAGTCAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT---G-ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TG--CG----------T----CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTT--CCCCTG---ATGT--T-G-CA-ACTTTCTTT-----A-----GTTT---A-TTCC-AT-TGGTC-AA-TTTGGAGA-TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTT-T-----G-AAAAA--TT---AGATTTGTT-ACTTTTT-CTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
finalCons : ATGTCATGTACGTGT----GTTTTATATATATATTAG-GGTTTGTAAATGAAAAATCATTGTGATT----------TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTTGG---ATTA-A-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACAC------C--TCTTTC--CTGTTTCACNGCG-GCA-G--TG-GAAATTGG---GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGAT--TGCGTTCCTTTGATTTGG---------------TTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATG-TCGTAG-----AGCTTTC--CCCTG---ATGT--T-G-CA-ACTTTCTTTA----------GTTT---A-TTCC-AT-TGGTCAA--TTTGA----TGCAC--AAGC-GGGCGGTT-CTGTCAAAGTTGAAACG---------------TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTTCAAAAAATTAGTTTTTAAC--------------TTTTT-CTTGT-G-GTCTG-TCGTTNA-TA-----GAA-----TTCAA--CGTTCGGACTTTAAT--A-ATAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Alignments
lowQualScore : 1111 111 2222 111111 2222222222222222 3333333333333333333333 1 111111 444444444444444444444444 1111111 1111111 11111 33333333333333333333333333 11111 1 111111 111 444444444 1111 22 333333333333333333 22222 55555555555555555555555 11 2222 33333333333333333333333 11 222222222222 22 11 11 11 1111 1
lowQualScore : 0 2222 1 555 6666 222222 0 9999999999999999 4444444444444444444444 66 5 0 0 0 5 1 000000 3 0 77 0 5 0 7 00 1 0 777777777777777777777777 5 0 6666666 4 8888888 66 6666 5 2 4 4 66 4 88888 0 1 8 99 4 1 8 4 66 77777777777777777777777777 4 3 0 5 4 0 11111 999 777 2 66 0 666 777777 2 5 000 5 5 5 1 8 999999999 7777 44 6 111111111111111111 00000 1 888 44 1 00000000000000000000000 2 8 3333 22 6666 99999999999999999999999 2 33 000000000000 22 3 88 33 99 8888 0 6 7
lowQualScore : . .... . ... .... ...... . ................ ...................... .. . . . . . . ...... . . .. . . . . .. . . ........................ . . ....... . ....... .. .... . . . . .. . ..... . . . .. . . . . .. .......................... . . . . . . ..... ... ... . .. . ... ...... . . ... . . . . . ......... .... .. . .................. ..... . ... .. . ....................... . . .... .. .... ....................... . .. ............ .. . .. .. .. .... . . .
lowQualScore : 7 1111 7 333 2222 666666 1 1111111111111111 4444444444444444444444 99 0 2 2 0 0 0 999999 4 1 99 3 7 1 1 33 4 4 444444444444444444444444 7 1 2222222 4 3333333 11 4444 3 7 4 4 11 4 11111 1 1 9 88 4 0 9 4 11 99999999999999999999999999 0 6 9 3 4 7 11111 888 888 2 99 0 111 999999 4 7 000 7 7 7 4 0 666666666 0000 44 7 888888888888888888 00000 7 888 22 0 22222222222222222222222 2 0 8888 55 8888 22222222222222222222222 5 88 888888888888 00 2 00 88 22 0000 0 7 3
consensus : ATGTCATGTACGTGT----GTTTTATATATATA-T-TAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT--GGATTAA-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGATTGCG---------TT---CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATGT-CGTAG-----AGCTTTC--CCCTG---ATGT--TG-CA-ACTTTCTTTA-----GTTTA-T---TCC-AT-TGG-TCAATT-TG---A----TACA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTTT-----A---AAAAATT------AGCTT-TTAACTTTCT-CTTGT-G-GTCTGT-CGTTNA-TA-----GAA-----TTCAACG--TTCGGACTTTAATA-A--TAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
Reference ( family-5520 ) : ATGTCATGTACGTGT----GTTTTATATATATA-T-TAGGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTGA-TTCAATTTTC-TT--GT-TAGTTTT--GGATTAA-GTCTTTA-CAAATTTA-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAGCATTTTCACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTCACNGCG-GCA-G--TG-GAAATTG-G--GTTTCTCTAATCT-ATCAN-AT-TTANGGTCA-GAT-CTT--GGGATTGCG---------TT---CCTTTGATTTGGTTATGCTTGTCTCTCAC-TCAT-TTTACCATCGTAAATTNATGT-CGTAG-----AGCTTTC--CCCTG---ATGT--TG-CA-ACTTTCTTTA-----GTTTA-T---TCC-AT-TGG-TCAATT-TG---A----TGCA--CAAG-CGGGCGGTT-CTGTCAAAGTTGAA---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATAA-TTCTACTNAAATTNTTC-----A---AAAAATT------AGTTT-TTAACTTTTT-CTTGT-G-GTCTGT-CGTTNA-TA-----GAA-----TTCAACG--TTCGGACTTTAATA-A--TAAACTTTGTGAAAACTT--TAAAACGATTGTGTTT-TA-ATATGGA-ACACTCAAATTA
gi|1 : -------ACTCAAGTTTTGACAA-C----C--TCTTCTCTCTGCTTCTCAGCTTGCA-G--TG-GAATTTATA--GTTCATCGAAATT-ATCAG-AT-ATGTGGTCA-GATACTT--AGGACTGCG---------TGAGGCTTGTCATTCA-TTAT-----TCTCTCAC---------ACCGT--TAAGTTGATATTCGTAG-----AGCTTTTATCCGTGCATATAT--TGGCA-GTTTGTTTTACTAAAGCTCA-TAATTTC-AT-TGG-TTAAGTGTG---GAGATTGCA---AAG--GGGCGGTT-CTGTCAAAGTTGAA---AACATGC-----C--TGTGAGTTTG--------TAGGGAGAA-TTCC---GAAATTTTT------ATGTACAAATTGTGAGAAGCAT-T--ATTTTCT--TTGT-GCGTCTGTTCGTTGA-TA-----GAA-----TTCAACGCGTTCATAGTTTAATA-GAGTAAACTCTGTGAAGACTT--TAAAACGATTGTGTTT-TA-ATATGGG-ATACTCAAATTA
gi|10 : ggattctctatacaatttcatgcttgagttgtatttgtcctataattggcgatcttctctacttgtttgataatattggtatgaatcatcataagtggaaatctacgttctgttcggaggagtgtccactggcagtggttgttccgtgaaAAAT---TTTTATTTAAATTGTTC-----A---GAA-----------GCTT-TTAACTTTTT-CTTCT-C--TCTGT-ATTTCAGTATTTTTGAAATCTATTCAACG--TTTGGAC--CAA-A-A--TAAA--TTGTGAAA--TT--TAAAA--ATTGTGTTT-CA-ATGCGAA-ACattccaaattgtaactccatggaaccccataattacta
gi|12 : ATTTA-TTATGGCTGTCTCTCAC-T-ATCTTCATCATTGCAAAGTAATAC-CGTGG-----AGTTTTC--CCCGA---ATTTCCTG-CA----TTCTGTA-----GTTCA-T---TTC-AA-AGG-TC--TT-T---------TACATCCAAGTTAGTTGGAT-CTATCAAAGttcatgtcatttccccaaattgaactctcacagacccaatataattgctaca
gi|14 : TGTAATGTACATGT----GCT------ATATA-C--AGGGTTTGTAAATGAAAAATCAGT------GTTTTATC--TTATAATTGTGA-TT---TCTCC-----------CTTT--AGATCAA-TTTTGTATTAGATTTA-TCA-GT---GAAAATTAATTGCTT
gi|15 : tatgtAT-TTTACCATCGTAAATT-ATGT-CAAAA-----AGTTTTC--CCCTA---A-AT--CA-CA-AATTTTCTTC-----GT----T---TCC-AT-CCG-TTAATa
gi|18 : tgctatcagatttctttaTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTGTACTAAAATT
gi|2 : ATGTCATGTACATGT----GTTTTATATATATAGT-TAGGGTTTGTAAAT-AATAATCATT------G--TGATT--TTATAATTGTAA-TTCAAATTTC-TTT-GT-TAGTTTT--G-ATTAATGTCTTTA-CAAGTTTG-TAA-T----GAAAAATAATTGTTTT--ACTTGAT-GTTTTGATCTTTAGGGAGAACATTT-CACACG--T----G--T----------G--C-ACAAT-------ACTCAA-CTT-GACA--C----C--TCTT-TC-CTGTTTCACTTGG-GCA-G--TATGAAATTG-G--GTTTCTCTAATCT-ATCC---T-TTAAAGTCACGAT-TTTTTGGGATTGTGATTATATTTTT---CCTTTGATTTGGTTATGCTCATCTCTCAC-TCAT-TTTACCATCGTAAATGTATGT-CATAG-----AGCTTCC--CCCTG---ATGT--TG-CA-ACTTTCTTTA-----GTTTA-T---TCC-AT-TGA-TCAATT-TG--------TACC--CAGG-TAGGCGGTT-CTGTCAAAGTTGAG---A-----C-----G--TGTGAGTTTGCA-----TTAGAAATCA-TTCTACTAAAATTCTTT-----G---AAAAATTA-----AGTTTGTTAACTTTCTGCTTGTAA-AACTCT-TGTTAA-TA------AA-----TTCTA----TTCGGACTT---TA-A--TAAATTTTG---GAACTTAGGATAATAGTTGTGTTTCTACATATAGATACACGCATATTAc
gi|3 : TATA-TGTAGGGATTCTAAA-----AATCATTTTTATTG--TTATT--TTATTATTGCGA-TT---TCTTC-TT--GT----------AGATTAA-TTTGGTATCAAATTCA-TTA-GT---GAAATCCAATTGC-------------GTGTCGG------GGGAGTGCACTGGCACATG--TTGTCG--TTATCAACTTGG--CCACAATTTGTGTTAATAAA-CTTTGACA--C----C--TCTC-TC-TTGTT-CTCAGCT-GCA-G--TG-GAAATTT-ACTGTTTTACCAGTTTTATCAG-ATATTGTGGTCA-GAT-CTT--AGGACTGCG---------TT---TC------------ATGCTTGTCATTCAC-TCAT-TTTCAAACTGTTAATTAATAT-CGTAA-----AGCTTTA--TCCTG---AATT--TG-CA-GTTGTGTTTA-----CTTTA-T---TTC-AT-TGGTTTAATT-TGAGAA----TGCA--AAAG--GGGCGGTT-CTGTC-AAGTTGAAAACA-----C-----GCCTGTGAGTTTGCAGGTAGTTAGA---AA-TTTTATTCAAATTGTTA-----A---GAAGCTT------A-TTT-TTA----TTT-CTTGT-G-GTCTGT--ATT---TA-----GAA-----TTCAACG--TTTGGATTATAATATA--TAAA--TTGTGAAA--TT--TGAAAC-ATTGTGTTT-T--ATATGGA-ACA-TC-AATTAtta
gi|4 : TGTACATGT----GTTTTA-----ATA-T--AGGGTTTATAA--------TCATT--------------------AATTGTGA----AATTTCC-T---GC-AAGTTTTTTGGATTAA-GTATT-A-CAAAATTAATAAATT---GAAAAATAATTGTTTTTAATCGGAT--CTTTG-CCTTCACGAAAGAC---TTCA------------------------------ACAAT-------TCT-AA-CTTTGACAGACGATACAATCTT-TC-TTGTTTTACCGTG-GCCCG--TA-GGCAT-G-C--GTTT-TATAATCTTATCACCAT-CTAAGGTCAAGAT-CTT--GGGATT--------------------------TGTTTATGCTTA-CTCTCACATCAA-TTTACCATTGTAAATGAATAC-CATATCCTTTAGCTTTT--ACCCG---ATGT--TGGCACACTTTTTTT-------TTTACT---TCCGATCTGG-TCA-TT-T----A----TACT--CAAG-CAGGCGGTTTCTGTCAAAGTTTGA---G-----CACGGTG--TGTGAGTTTGCA-----TAAGGATTAATTTCTAC-AAAATTATTTAAAAGA---AAAAATT------AGATT-Tattccacaaattgaactctcacggaacccctaattactac
gi|5 : acTGTAAATGT----ATTATATACACATG-T-CA----CTATAA-T--AAAAT--TT------T--TGCTTACTTATAGTAGTGAATTCA-TTTTC-TT--GT-CAGTTTT--GGATAAA-GTCTTTG-CAAATTTA-TGA-TTTAAAAAAAATAATTGCTTT--TCTTAAT-G-TTTGATTTTTAGGGAAAGGATATTCTCATGATT----G--T----------GTTC-ACAAT-------ACCCAA-CTTTAACC--A----C--TCTT-TT-CCGTTTCACTGTG-GTA-G--TG-GAGATT--G--GTGTCTATACTCT-ATCAC-AT-TTAAGGTCA-GAT-CTT--GGGATTGCA---------TT---CCTTTG-------TATA------TCTCAC-TCAT-TTTACCATCATAAATTTATGC-CACAG-----TGCTTT---CCTTG---GTAT--TA-CA-ACATTCTTTG-----GTTAA-T---TCC-TT-TGG-CCAATgtaccctatctgctt
gi|6 : tgcaaatatATGTCATATACGTGTACATGTTTTATATATATA-----GGGTTTGTAAATGAAAAATCATT------G--TGATT--TTATAATTGTAA-T-CAATTTTCATTCAATGTAGTTTT--GGATTAA-GTCTTTA-CAAATTAG-TAA-TT---GAAAAATAATTGTTTT--ACTTGAT-GTTT-GATCTTTAGGGAGAGCATTTTCACACG--T----T--T----------T--C-ACAAT-------ACTCAA-CTTTGACA--C----C--T---------GTTTCACTGGG-GCA-G--TA-GAAATTG-G--GTT-CTCTAATCT-ATCGC-AT-TTAAAGTCA-GAT-CTT--GGGATTGTA---------TT---CCTTTGATTTGGTAATGCTTATCTCTCAC-TCAT-TTTACCATCGTAAATTTATGT-CATAG-----AGCTTTC--CCCTG---ATGT--TG-CA-ACTTTCTTTacgtcggttt
gi|7 : ccaatGT----GTTTTACATATATA-----GTGTTTGTAAATGAAAAAGCATT------G--TGATT--TTATAATTGTGAATTTAATTTT------AT-TAAGTTT--GGATTAA-GTCCATA-CAAAATTG-TA---T---GAACA-TAATTGTT----ACTTCATTGTATT-ATCTTTAGGGAGAGCATTTTCACACA--T----G--T----------T--C-ACGAT-------ACTCAA-CTTTGACA--C----C--TCTT-TC-CTGTTTTAC-GCG-CCA-GACTA-GAAATT--G--ATTCCTCTAATCT-ATCGC-AT-TTAACGTC---AT---------ATTGCA---------TT---CC------------ATGCCTGTCTCTCAC-TCAT-TTTACCATCGTAAATTGTTAT-CATAG-----AGCTTTT--CCCTG---AT
gi|8 : tgtattcaA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATTG-G---TTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG---------CG---TCTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-
gi|8 : TT-CTGTCAAAGTTGAA---A-----C-----G--AGT-AGTTagagcttttctttgaatttgcatttgtcaatttctgtcaaagttgaaacgagtagttctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
gi|9 : actttgactactcttatctgtttcaaggtggcaatggaaattggtttctacaagttctcaaatttatggtcggatctagagattgtgcgtctttgatttggttacgcttgtttctcactcatagagcttttctttgaatttgcatttgtcaatTATGTGT----GTTTTA-------A-T-TAGGGTTTGTAAATGATAT-TCATT------------------ATAATTGGGA-----ATTTTT-TA--GT-T--TTTT--GAATGTA-GTATTTA-CAAATTCA-TGA-TT---GAAAAAAAACTATTTT--ATATGAT-GTTT-GATCTTTAGGAAAACCATTTTCACATG--T----GATT----------G--C-AT--T-------TCTCAA-CTTTGACT--A----C--TCTT-AT-CTGTTTCAAGGTG-GCA-A--TG-GAAATT--G--GTTTCTACAAGTT-CTCAA-AT-TTATGGTCG-GAT-CTA--GAGATTGTG---------CG---TCTTTGATTTGGTTACGCTTGTTTCTCAC-TCAT-ctaaagttttattcaacagttaagaagctttcattttctgtacatttaataaattgtgaaatcgaaacaatgtgttttaaatttgaaactccaatattgaaccctcctgaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATGCTATTGTAAAGATTCTAAAATCATCTTTTTATATGTTAATTCCAATAAATTGCGAAATTTGTCTTCATGTAGAATGTAATTTTGGTATCAAATTCATATATGAAATCTAATTGCGTATCGAGGGAGTGCACTTGGCACATGTCGTTATCAACTT
Unaligned ( gi|13 ): CTAAAAATCATTTTTATTGTTATTTAATAATTGCAATTTCTTCATGTAGATTAATTTTGGTATCAAATTCATTAGTGAAATCTAATTGCGTATCGAGGGAGTGCACTGGCACATGTCGTTATCAACTT
Unaligned ( gi|16 ): ATAATAAATTGTGAAATTTGAAACATGGAGCTTCAAATTAATTCCCCAAATTGAACTCTCACGGAACCCCATAATTACTACA
Unaligned ( gi|17 ): TTTGCAGTTTTGTTTACTAAAGTATATTTCATTGGTTAATTTGAGATGCAAAGGG