lowQualScore : 11111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1 1 555555 1 11 2 1 1 1 111 444444444 11 1111 3333333 444444444444444 1 333333 2 2222 11 22222 3333 1 33333333 3333 444444444444 3 44 2 22222222222 33333333 2222 22 1 3 1 11111 11 22 11111 11 11 1 1 222 1 1 222222222 66666 00000000000000000000000000000000000000000000 1 333 1 1 33333 4444444 111 222 444444444444444 3333333333 33333333333333333333333 1 2222 1 111111111111111111111111111111111111 55555555555 33333333333 2222222222 11 22222 11 77777777777777777777777777777777777777777 11 22 1111111 2222222222222222 22 5555555555555555555555555555555555555555 44444 11111 2222 11 22 22222222222 111111 11111111 11 11111111111 11111111 3333333333333333333 11 2 444444444444444444 77777777777777
lowQualScore : 4 7 3 3 777777 3 88 3 0 0 66 0 999 7 444444444 88 7 4444 2222222 7 777777777777777 6 6 7 111111 3 5555 33 44444 6666 8 0 3 6 33333333 6666 0 111111111111 2 00 0 99999999999 8 0 22222222 8 88 0 3 3 3 1111 2 33 0 0 3 66 7 0 8 444 77777 2 00 99 66 77777 66 33 3 0 0 111 0 8 0 999999999 2 33333 9 11111111111111111111111111111111111111111111 2 3 666 3 4 3 33333 3333333 66 222 000 6 000000000000000 8 8 1111111111 2 8 55555555555555555555555 3 0 1111 0 666666666666666666666666666666666666 55 77777777777 7 11 5 444 0 0 77777777777 8 1111111111 5 0 11 00000 22 55555555555555555555555555555555555555555 11 33 1 3333333 3333333333333333 22 99 6666666666666666666666666666666666666666 6 66666 00000 7777 00 99 5 5 5 5 5 7777 88888888888 222222 4 66 1 5 5 66666666 00 66 44444444444 0 7 6666 3 77 3 3 3 11111111 6 2 2 2 4444444444444444444 5 33 2 22 2 2 555 555 3 3 4 666666666666666666 4 00000000000000 0 4 4 66 5
lowQualScore : . . . . ...... . .. . . . .. . ... . ......... .. . .... ....... . ............... . . . ...... . .... .. ..... .... . . . . ........ .... . ............ . .. . ........... . . ........ . .. . . . . .... . .. . . . .. . . . ... ..... . .. .. .. ..... .. .. . . . ... . . . ......... . ..... . ............................................ . . ... . . . ..... ....... .. ... ... . ............... . . .......... . . ....................... . . .... . .................................... .. ........... . .. . ... . . ........... . .......... . . .. ..... .. ......................................... .. .. . ....... ................ .. .. ........................................ . ..... ..... .... .. .. . . . . . .... ........... ...... . .. . . . ........ .. .. ........... . . .... . .. . . . ........ . . . . ................... . .. . .. . . ... ... . . . .................. . .............. . . . .. .
lowQualScore : 0 0 3 3 333333 3 33 7 0 0 22 0 000 3 000000000 33 0 7777 3333333 7 777777777777777 7 0 3 333333 7 3333 88 22222 8888 8 0 2 5 55555555 2222 8 000000000000 0 22 4 00000000000 0 8 88888888 0 88 8 2 2 2 2222 5 88 0 0 2 88 0 0 8 222 00000 5 00 55 55 22222 88 33 2 0 0 000 0 8 0 222222222 5 22222 8 33333333333333333333333333333333333333333333 0 3 777 3 7 3 33333 3333333 55 000 000 4 444444444444444 0 0 4444444444 5 8 55555555555555555555555 5 0 0000 0 222222222222222222222222222222222222 22 55555555555 0 55 6 000 8 8 22222222222 0 8888888888 6 6 00 00000 00 22222222222222222222222222222222222222222 00 22 7 7777777 3333333333333333 88 22 7777777777777777777777777777777777777777 7 55555 77777 2222 22 33 7 7 7 1 7 1111 66666666666 888888 4 11 1 0 0 11111111 99 11 55555555555 5 3 9999 6 33 3 3 1 99999999 2 9 9 9 1111111111111111111 7 99 9 22 9 9 000 000 6 6 0 666666666666666666 0 00000000000000 8 4 4 99 0
consensus : TAAAGNAAAAGACCA-TTCAC-AGAATA------AGTGT-AAAAG--TAAT-AAAATAATT-CATTGATTTT-CATGAAACAAAANCGATATGA-AATATTT--AAATTTCTATTGAAATGTCA-ATT-----TCGACA--TATATGCGTGAATCCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATAT--AAG-ATAAAA-TAAAACGAATTGATAATGAA-TTAAAATCAATGA-ACAAAATA-CAAACCAA-A--TAAAAAA--AAAGA---CCGATC---AACAAAAAA-TATTGCACTC---A----AGTAT--TAGGAAAT------------CAAACACAGT--TTAAATCAATGGTTT----ATAA--TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAA----ATNAT-AA-ACCACGAATCTATTCAACTTCCTCTCCGAA-TGACTTCAANTTNACTATACTTNCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAA-ACAG-ATCCAAGATTTA-CATT-N-ACGGGNCGGCTC-----ATCCACTTTTTTAT------------NGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATGGCGTTTCG-ATCTTATATAAA--CGA-TNTGTG-TAAAA-----GGTGAA-------TTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCACACACCACCC--CCCATC---ACACANTTTG-ATN---AT-ATTGCA-------------T----------------GC---CAAAATTCTATGT----------CGCCTTTTTTTTTTTTTAAAAGTAAATGAAA-----AG----AA-AATTAAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG---------GC------C-A--TG------CGTA---GGTAGAA--GGTCNACTTTTTA---AT--TAAAA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NTAT------TT-TCGT------------------GTGC-AAATGC--GGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A-CAA--AA------TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGC-T--TGTT----T------ACGTG-CAC---GT-AGG-AGCG-C-CTA-CGACA-GC--CCGGGAC-CA-CT-CGT-AGAG-------------T-TAC-G-ATC--G-AT-NTT-GGTCGT-A---A---ATCGCAAGTCGT-AACT-TTTAGTGAAA---NC-GTCGTAAAGTG-GCTACG-TT-C---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( gi|2 ) : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAATA--TAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-----ATA---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAA----ATGA--AA-ACCACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAA-A-AG-ATCCAAGATGTA-CATT-A-AC-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATTTTG-ATTTTATATAA---TGA-TATGTG-TAAAA-----GGTGAA-------TTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCCCCCCC--CCCATC---AC-CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTCTGTG-----------CGCCTTTTTTTTTTTTTAAAAATAAATGAAA-----AG----AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG---------GC------C-A--TG------CGTA---GGT-GAA--GGTCCACTTTTTA---AT--TAAAATTTTCGTAATCAG-GGCTCGGAACTG--CA----ATAT------TT-TCGT------------------GTGC-AAATGC--G--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A-CAAC-AA------TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGT-T--TGTT----T------ATGTG-CAC---GT-AGG-AGCA-C-CTA-CGACA-GC--CCAGGAC-CA-CT-CGT-AGAG-------------T-T---G-ATC--G-AT-TTT-GGTCGT-A---A---ATCGCAAGTCGT-AACT-TTT-GTGAAA---AC-GTCATAAAGTGGGCTACG-TT-CAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAATA--TAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-----ATA---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAA----ATGA--AA-ACCACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAA-A-AG-ATCCAAGATGTA-CATT-A-AC-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATTTTG-ATTTTATATAA---TGA-TATGTG-TAAAA-----GGTGAA-------TTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCCCCCCC--CCCATC---AC-CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTCTGTG-----------CGCCTTTTTTTTTTTTTAAAAATAAATGAAA-----AG----AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG---------GC------C-A--TG------CGTA---GGT-GAA--GGTCCACTTTTTA---AT--TAAAATTTTCGTAATCAG-GGCTCGGAACTG--CA----ATAT------TT-TCGT------------------GTGC-AAATGC--G--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A-CAAC-AA------TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGT-T--TGTT----T------ATGTG-CAC---GT-AGG-AGCA-C-CTA-CGACA-GC--CCAGGAC-CA-CT-CGT-AGAG-------------T-T---G-ATC--G-AT-TTT-GGTCGT-A---A---ATCGCAAGTCGT-AACT-TTT-GTGAAA---AC-GTCATAAAGTGGGCTACG-TT-CAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAGA--TATATGCGTGAATCCTATCAA-GTCGAGTAAATCAT-----------ATTCACAGAAT---------------TAAAA--------TAATGAATTTAAAATCAATGA--CAAAATA-CAAACCCAAA--TAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGTAT---AGAGAAT------------CAAACACAGT--TCAAATCA-TGGTTTATAAGTA---TGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAA----ATCAT-AA-ACCACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CCA-TAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA-TT-AAACA-GG-ATCCAAAATTTA-CTCC-AGAC-GGACGGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATAGAGTTTCATATCTTATATAAA--CGA-TGAGTGGTAAAA-----GTGGAA-------TTAA-TCGTAAAG-GTTAT--AGGCTCGG-TACCTGAA----AACGTC---CGT-AG-CGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-C---ACACATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC-ATG-----------TGCCTTTTTT--------AAAGTAA-TGAAA-----GA----AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCTACATTTA--TTGG---------GC------C-A--TG-------GTA---CGTAGAATAAGTC-ACTTTTTA---CCGATAAAA--------ATC---GGCTCGGA-CTG--CA----TTAA------TTATCGCCAACATCACATCAGTACAGTGC-CAATGC--AGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACA---A-CAAA-AA-------GAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGC-T--TGTT----T------ACGTG-CAC---GT-AGGAAGCACC-CTA-CGACA-G---GCAAGAT-CA-CT-CGT-AGAG-------------TAC---G-ATC--G--T-TTT-TGTCGT-A---A---ATCGCAAGTCGT-AACT-TTA-GTGAAA---ACAGTCGTTAAGT--GCTACG-TT-C----------ATTGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATAAGAATTTAAAAAATAT--AAGGATAAAA-TAAAACGAATTGATAATGAA-TTAAA-TCAA----A-AAAATA-CAAACCAA-AGTTAAAAAA--AAAGA---T-GAT----AACAAAAAA-T-TTGCACTCGTGA----AGTA--ATAGGA--T------------CAAACACAGT---TAAATCAATGGTT-----ATA---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGA--AACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC--TT--AC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAA-ACAG-ATCCAAGATTTA-C--T-C-ACAGACAGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNTATAAATTTGATTTTATA-TAAAGATAGTGGTAAAAGGTGAATTA-ATCGTAA-G-TTA--TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACA-------C--ACCA-C---ACACACTTTG-ATT---AT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTCTATGT----------TGGCTTTTTTTTTTTTT-AAGTTCAATG--A-----AG----AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----TACATTTTATTTGG---------GT------CAA--TG------CATAC--GGTAGAA--GGT-AACTTTTTACACAT--TAAGAGTTTCGTAATC-G-GGCTCGG-ACTG--C-----TTA-------TT-TCGT------------------GTGCAAAATGCAGA--CAGC--A--GTC----ATTG--TTTCTAC--TTCATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATAC----G-TAACAAA------TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATC---------GGTCT--TGTT----T------ACGTGCCAC---GT-AGG-AGTG---CTACCGTCA-GC--CTGGAAT-CA-CTGCGTCAGAG-------------T-TAGCG-ATC--GCAT-TTTGGGTCGTAA---A---ATCGCCAGTCGTAAACT-GTT-ATGAAA---GCGGTCGTA---TGTGC-ACGCTT-C---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGGtcc
gi|23 : agtTT-CATTGATTTT-CATGAAACAAAATCGATACGA-A
gi|8 : AAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGTAT---AGGAAATATTATCCTGAATCAAACACAGT--TTAAATTA-TGGTTT----ATAAA-TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTC-AAACAA----ATCATGAA-ACCACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|16 : AAT------------CAAACACAGT--TTAAGTCA-TGGTT-----ATAATATGCATACA-TCGTTTGCTTAT--------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|9 : cctgTGGTGTATA-TTCTAA-ACAGCATCCAAGATTTACCATTCC-ACGGGACGGCTC-----ATCCACTTTT
gi|20 : AATCGTAA-ATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCCatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
gi|5 : -GTGAT-CAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACATCAACC--CCCATTTTGAC--AACTTGCATC---ATTATTACA-------------T----------------GC----AAAGTTCTATGTATTGCCCACTCCCCTCTTTCCTCCTTTAAAAA-AAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----TACATTTATTTTGGCCGACTCTGGCATTACAC-A--TG-------ATA---AA--GAA--GGATAACTCT--A---AT--TAA---TTTCATA-TTGG-GGCTCGG-ACTG--CCCGTTGTATTCCGAATT-TCGT------------------GTG---AATGC--GGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTACA---A-CAA--AA------TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGC-T--TGTT----TACGTACATGTA-CAC---GT-AGG-TGCA-C-TTA-CGACA-AC--CT-GGAC-CA-CT-CGT-AGAA-------------T-TAC-G-ATC--G-AT-ATT-GGTCGT-A---A---ATCGCAGGTCGT-AACT-TTTAGTGAAA---CG-GTCGT---TCGTGCTACG-TT-TA
gi|7 : tAAAAGTTAATGAAA------G----AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----TACATTT-ATTTTG---------GC------C-AAGTGGTATTTCATATATGATAGAA--GGT-CACTCTTCG---AA--TAAAATTTT-ATATTC-G-GGCTCGG-ACTG--CA----GAAT------AT-TCGT------------------GTAC-AAATGCAGA--CAGCAAA--ATC----ATTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC----A-ACAG-AA------TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGC-T--GGTT----T------ACATG-CAC---GT-AGG-AGTG-C-TTA-CGTCA-GC--CT-GGAT-CA-CT-CGT-AGAG-------------T-TAC-G-ATC--A-AT-ATT-TGTCGT-A---A---ATAGCAAGTCGT-AACT-TTTAGTGAAA---CG-GTCGT-AAGT--GCTACG-TT-C---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAcgatcgcgtagtg
gi|6 : taTCTA---AT--CAA---TTTC---ATCCGCGGATTGGA-CTGTACA----ATAT------TTCTC---------------------TAC-AATTGC--AGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC----AGCAA--AA------TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TAC-T--CGTT----T------ATTTA-TAC---GT-AGG-AGTA-T-TTA-CGACA-AA--CCTGGAC-CA-CT-GAC-AGAG-------------T-TAC-G-ATC--G-AT-GTT-GATAGT-A---A---ATTGCAAGTCAT-AACT-TTTAGTGAAACGGAT-GT----ACGT--GTTACG-TT----AGCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAA
gi|14 : tttgacagtttgtcatcttttttcattacatgcaaacttcatgtattgtcccctacaactttttttattcagttttaggaaatgaaagtaatgacaacaaaattcaacgcttctggtgactggtatttatacacacaataaagttaaggatacTCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC----A--AGC-GAGAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TG--C--TGGT----T------ACGTG-CAC---GTGAGG-AGCG-CGCTA-CGACA-GC--Ctacaccatctgtctgattagta
gi|10 : cacccacttcAAAT--TATACTATCA-CAA--AA------TGAT-CCCAGGCCGG--GCCAACA
gi|12 : AAT--ACTACC---A-CAA--AA------TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGC-TCTTGTTACCGTG-----ATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTA-CCTGGAA-CATCT-CGT-AGGG-------------T-T---A-CTTAAG-AA-CTT-GGTCGT-A---G---ATCgctaacttaccacagcctagaccacttgtagagttacgattgatattattcgtaaatcgcatgttgcaactattagtgaaacggccgtaggtgctacgttttcgtttatgatctacgatcgattagtgaaacgaccctct
gi|11 : CATTT--------TGC-T--CCTT----T------ACCTG-CAT---AT-AGG-AGCA-C-CTG-TGACA-GC--CTTGGAC-CA-TT-CAT-AGAGTGTTAAAAGCATAT-T---G-ATC--A-AT-ACT-GGTTGT-A---A---ATCACAAGTCCT-CACT-TTTAGTGAAA---TG-GTTGTA---TGTGTTGCA-TT-C---ATGTTTA--TGTCT-ATGCTTTACAA
gi|18 : ------ACGTA-CAC----T-AGG--GCG-C-CTA-CAACA--CAACCGGGATTCA-CT-CGC-AG---------------T-T---ACATC--C-ATATGT-AGTCGT-A---A---ATCGCA
gi|17 : ------ACGTA-CAC----T-AGG--GCG-C-CTA-CAACA--CAACCGGGATTCA-CT-CGC-AG---------------T-T---ACATC--C-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|10 : A-C-TTA-CCACA-GC--CTAG-AC-CA-CT-TGT-AGAG-------------T-TAC-G-ATT--G-AT-ATT-ATTCGT-A---A---ATCGCATGTTGC-AACTATTA-GTGAAA---CG-GCCGT-AGGT--GCTACG-TT--------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACGcg
gi|21 : aaattatactatcacaaaatgatcccaggccgggccaacagcta-CGTCA-GC--CT-GGAT-CA-CT-CGT-AGAG-------------T-TAC-G-GTC--A-AT-ATT-TCTCGT-A---A---ATCGCAAGTCGC-AACT-TTaccctct
gi|19 : --CCAGGAC-CA-CT-CGT-AGAG-------------T-TAC-G-ATA--G-AA-GTT-GGTCGT-ACTTAAATATCGCAAGTCGT-AACT-TTTAGTG
gi|13 : ag-CT-CGT-AGAT-------------TAC---G-ATC--G-TG-GTT-GGTCGT-A---A---ATCGCAAGTCGT--ACT-TTTAGTG-AA---AC-GGCGTAAAGT--GCTACG-TT-----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|22 : caggtaagatgtaaaatgtgtGTTACG-TTTC----TGTTT--CTGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTCcc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT
Unaligned ( gi|24 ): TAGTGAAACGGTCGTAAGTGCTACGTTCAT
Alignments
lowQualScore : 1 1 6666666 1 11 2 11 222222222 11 1 111 1 1 3333333333 2 3333 2 1 2222 11 11111 3333 22222222 333 333333333333 11 2 3333333 222222 22 11 1 2 111 1 33333333333 44444 5555555555555 1 11 111111 11 444444444444 2 111 111 222222 1111 11 11 1111 888888888888888888888888888888 111 444444444444 11111 111 1111 11111 1 33333333333333333333333333333 111 11 111 2222 111 11 2222222222222222 444444444444444444 22222 1 2222222 11111111 111111 1111111 111111111 111 33333333 1111 11
lowQualScore : 1 2 0 0 0000000 0 33 0 8 8 1 8 33 3 666666666 2 33 2 0 77 777 0 0 8888888888 3 2 0 3 3 0000 0 0 4444 11 55555 0000 0 8 0 3 55555555 222 3 444444444444 7 88 7 3 4444444 6 555555 6 6 0 0 0 8 1 66 11 0 0 3 3 8 3 0 3 11 3 44 0 11 111 0 99 55 0 88 8 0 8 8 0 22222222222 1 00000 6 2222222222222 2 6 555 3 6 1 88 444444 22 99 111111111111 0 6 6 222 3 222 777777 6 6 4444 7777 5 0 11 55 5 88 1 8 5555 8 888888888888888888888888888888 444 0 888888888888 3 3 99999 111 6 99 6 99 7 2222 3 99 66666 1 66666666666666666666666666666 666 99 55 0 000 77 9999 0 1 444 77 77 0000000000000000 5 222222222222222222 5 4 5 77 00000 77 0 5 5 5 5 55 0 6666666 55 8 8888 4 55 4 4 33333333 55 888888 111111 5555 3 66 3 3 2 1111111 3 5 2 2 33 333333333 33 2 1 5 2 2 444 444 3 555 55555555 3 4444 00 4 4 66 4
lowQualScore : . . . . ....... . .. . . . . . .. . ......... . .. . . .. ... . . .......... . . . . . .... . . .... .. ..... .... . . . . ........ ... . ............ . .. . . ....... . ...... . . . . . . . .. .. . . . . . . . . .. . .. . .. ... . .. .. . .. . . . . . ........... . ..... . ............. . . ... . . . .. ...... .. .. ............ . . . ... . ... ...... . . .... .... . . .. .. . .. . . .... . .............................. ... . ............ . . ..... ... . .. . .. . .... . .. ..... . ............................. ... .. .. . ... .. .... . . ... .. .. ................ . .................. . . . .. ..... .. . . . . . .. . ....... .. . .... . .. . . ........ .. ...... ...... .... . .. . . . ....... . . . . .. ......... .. . . . . . ... ... . ... ........ . .... .. . . .. .
lowQualScore : 0 5 0 0 8888888 0 88 0 0 0 0 0 88 2 222222222 0 88 5 0 55 555 0 8 8888888888 2 5 0 2 2 8888 0 0 8888 00 44444 4444 6 0 8 2 00000000 666 8 222222222222 3 33 3 7 0000000 7 888888 7 7 8 8 8 0 0 66 00 6 8 2 8 0 6 8 8 88 8 66 0 66 888 8 88 00 8 88 0 0 0 0 6 66666666666 0 00000 0 2222222222222 2 8 888 6 0 8 66 444444 44 00 000000000000 4 7 7 222 5 333 555555 7 7 8888 7777 4 6 00 66 6 66 0 0 0000 0 000000000000000000000000000000 000 8 888888888888 8 2 33333 777 0 22 7 22 3 0000 2 22 77777 7 33333333333333333333333333333 555 22 00 1 000 99 1111 4 9 333 00 99 4444444444444444 7 111111111111111111 7 3 0 99 00000 44 0 0 0 0 0 55 6 5555555 55 0 5555 0 55 0 0 22222222 00 888888 999999 5555 1 66 1 1 9 8888888 5 7 7 7 77 333333333 77 7 0 3 7 7 777 777 3 555 88888888 3 8888 00 0 0 11 4
consensus : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATNCTACTC-AGTCGAGTAAATCATATT---CA-AGAATTAAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACC-AATA--TAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGG-TTATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACA-G-ATCCAAGATTTAC-ATTC-ACG--GGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATGANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-AT---NAT-ATTGCA-------------T----------------GC---CAAAATTCTATGT----------CGCCTTTTTTTTTTTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGGGC--------C-A--T-G------CGTAC--GGTA--GA--AGGTC-ACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTGAAACG-GTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( family-551 ) : TAAAGNAAAAGACCA-TTCAC-AGAATA------AGTGT-AAAAG--TAAT-AAAATAATT-CATTGATTTT-CATGAAACAAAANCGATATGA-AATATTT--AAATTTCTATTGAAATGTCA-ATT-----TCGAC--ATATATGCGTGAATCCTACTC-AGTCGAGTAAATCATATT---CA-AGAATTNAAAAAATA--TAA-GAT-AAAATAAAACGAATTGATAATG-AATTAAAATCAATG-AACAAAAT-ACAAACC-AA-A--TAAAAAA--AAAGA---CCGATC---AACAAAAAA-TATTGCACTC---A----AGTAT--TAGGAAAT------------CAAACACA--GTTTAAATCAATGGTTTATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TNAT-AAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACTTCAANTTNACTATACTTNCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACA-G-ATCCAAGATTTAC-ATTN-ACG--GGNCGGCTC-----ATCCACTTTTTTAT------------NGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATGGCGTTTCG-ATCTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCACACAC--CACCCCCCATCAC-ACANTTTG-AT---NAT-ATTGCA-------------T----------------GC---CAAAATTCTATGT----------CGCCTTTTTTTTTTTTTAAAAG---TAAA---TGAAAAG--AA-AATTAAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGGGC--------C-A--T-G------CGTA---GGTA--GA--AGGTCNACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTGAAANC-GTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATA-AGAATTTAAAAAATA--TAAGGAT-AAAATAAAACGAATTGATAATG-AATT-AAATCAA---A--AAAAT-ACAAACC-AA-AGTTAAAAAA--AAAGA----TGAT----AACAAAAAA-T-TTGCACTCGTGA----AGTAA--TAGG--AT------------CAAACACA--G-TTAAATCAATGG-TTAT---A---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGAAACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC----TTAC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAAACA-G-ATCCAAGATTTAC---TC-ACA--GACAGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNTATA-AATTTGATTTTAT--ATAAAGATAGTGGTAAAAGGTGAATT-AATCGT-AAG-TTA--TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACACAC--CA--------CAC-ACACTTTG-AT---TAT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTCTATGT----------TGGCTTTTTTTTTTTTT--AAGT--TCAA---TG--AAG--AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----TACATTTTATTTGGGT--------CAA--T-G------CATAC--GGTA--GA--AGGT-AACTTTTTACACAT--TAAGAG-TTTCGTAATC-G-GGCTCGG-ACTG--C-----TT-A-------TT-TCGT------------------GTGCAAAATGCAGACAGC--A--GTC----ATTG--TTTCTACT-T-CATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATAC----G--TAACA-AA----TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATCG--------GTCT--TGTTTAC------GTGC-----CAC---GT-AGG-AGTG---CTACCGTCAG---C--CTGGAAT-CACTGCGTCAGA--GTTAG--------C--GATCGCATTT-TGGGTCGTAA---A---ATCGCCAGTCGTAAACTGTTA-TGAAAGCGGTCGTA---T-GTGC-ACGCTTC---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGG
gi|10 : agtAAAT--TATACTATCA--CA--A-AA----TGAT-CCCAGGCCGG--GCC------AAC-AGCTAACT--------TAC-------------------------CAC---A---------G-C-CTA-----------------GAC-CACT-TGT-AGA--GTTA---------C--GATTG-ATAT-T-ATTCGT-A---A---ATCGCATGTTGC-AACTATTAGTGAAACG-GCCGT-AGGT---GCTACG-TT-------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACG
gi|11 : CATTT--------TGCT--CCTTTAC------CTG------CAT---AT-AGG-AGCA-C-CTG-TGACAG---C--CTTGGAC-CATT-CAT-AGAGTGTTAAAAGCATATT--GATCA-ATAC-T-GGTTGT-A---A---ATCACAAGTCCT-CACTTTTAGTGAAATG-GTTGTA---T-GTGTTGCA-TTC---ATGTTTA--TGTCT-ATGCTTTACAAaccctct
gi|12 : AAT--ACTACC---A--CA--A-AA----TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGCTCTTGTTACC------GTGATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTAC--CTGGAAC-ATCT-CGT-AGG--GTTA---------CTTAA--G-AACT-T-GGTCGT-A---G---ATC
gi|13 : CT-CGT-AGA---TTA---------C--GATCG-TGGT-T-GGTCGT-A---A---ATCGCAAGTCGT-A-CTTTTAGTGAAA-C-GGCGTAAAGT-G--CTACG-TT----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|14 : caggtaagatgtaaaatgtgtCCACT-TC--TCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC----AAGCG--A-GAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TGC---TGGTTAC------GTG------CAC---GTGAGG-AGCG-CGCTA-CGACAG---C--Ccc
gi|16 : cacAAT------------CAAACACA--GTTTAAGTC-ATGG-TTATAATA---TGCATACA-TCGTTTGCT--TAT------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|17 : cctgAC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCA
gi|18 : AC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|19 : --CCAGGAC-CACT-CGT-AGA--GTTA---------C--GATAG-AAGT-T-GGTCGT-ACTTAAATATCGCAAGTCGT-AACTTTTAGTGcg
gi|2 : agTAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATACTACTC-AGTTGAGTAAATCATATT---CA-AGAATTAAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACC-AATA--TAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGG-TTAT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-A-G-ATCCAAGATGTAC-ATTA-AC---GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-AT---AAT-ATTGCA-------------T----------------GC---CAAAATTCTGTG-----------CGCCTTTTTTTTTTTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGGGC--------C-A--T-G------CGTA---GGT---GA--AGGTCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTGAAAAC-GTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|20 : AATCGT-AAATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCC
gi|21 : -CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GGTCA-ATAT-T-TCTCGT-A---A---ATCGCAAGTCGC-AACTTT
gi|22 : -GTTACG-TTT---CTGTTTC--TGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTC
gi|23 : TT-CATTGATTTT-CATGAAACAAAATCGATACGA-Accg
gi|24 : TAGTGAAACG-GTCGT-AAGT---GCTACG-TTC---AT
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATACTACTC-AGTTGAGTAAATCATATT---CA-AGAATTAAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACC-AATA--TAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGG-TTAT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-A-G-ATCCAAGATGTAC-ATTA-AC---GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-AT---AAT-ATTGCA-------------T----------------GC---CAAAATTCTGTG-----------CGCCTTTTTTTTTTTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGGGC--------C-A--T-G------CGTA---GGT---GA--AGGTCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTGAAAAC-GTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAG--ATATATGCGTGAATCCTATCA-AGTCGAGTAAATCATATT---CACAGAATT-------------------AAAATAA--TGAATT-----------TAAAATCAATG-A-CAAAAT-ACAAACCCAA-A--TAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGTAT---AGAGAAT------------CAAACACA--GTTCAAATCA-TGGTTTATA--AGTATGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAAA-TCAT-AAAC--CACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CC-ATAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA--T-TAAACAGG-ATCCAAAATTTAC--TCC-A-GACGGACGGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATAGAGTTTCATATCTTATATA-AA--CGA-TGAGTG-GTAAA------------AGTGGAATT-AATCGTAAAG-GTTAT--AGGCTC-GGTACCTGAA----AACGTC---CGT-A-GCGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-CAC-ACATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC-ATGT-----------GCCTTTTTT--------AAAG---T-AA---TGAAAGA--AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCTACATTTA--TTGGGC--------C-A--T-G-------GTA---CGTA--GAATAAGTC-ACTTTTTA---CCGATAA-A--------AATC---GGCTCGG-ACTG--CA----TTAAT------TA-TCGCCAACATCACATCAGTACAGTGC-CAATGCAGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACA---A--CA--A-AA----AGAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGGAAGCACC-CTA-CGACAG------GCAAGAT-CACT-CGT-AGA--G-TA---------C--GATCG--TTT-T-TGTCGT-A---A---ATCGCAAGTCGT-AAC-TTTAGTGAAAACAGTCGTTAAGT---GCTACG-TTC---AT-------TGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|5 : -GTGAT-CAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACAT--CAACCCCCATTTTGACAACTTGCAT---CATTATTACA-------------T----------------GC----AAAGTTCTATGTATTGCCCACTCCCCTCTTTCCTCCTTTAAAAAAAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----TACATTTATTTTGGCCGACTCTGGC-A--TTA------CACAT--GATAAAGA--AGGATAACTCT--A---AT--TAA----TTTCATATTG-G-GGCTCGG-ACTG--CCCGTTGT-ATTCCGAATT-TCGT------------------GTG---AATGCGGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTACA---A--CA--A-AA----TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGCT--TGTTTACGTACATGTA------CAC---GT-AGG-TGCA-C-TTA-CGACAA---C--CT-GGAC-CACT-CGT-AGA--ATTA---------C--GATCG-ATAT-T-GGTCGT-A---A---ATCGCAGGTCGT-AACTTTTAGTGAAACG-GTCGT-TCGT---GCTACG-TTT---ACGATCG--CGTtcc
gi|6 : tTCTA---AT--CAA----TTTCAT--CC-GCGGATTGGA-CTGTACA----AT-AT------TTCTC---------------------TAC-AATTGCAGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC----AG-CA--A-AA----TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TACT--CGTTTAT------TTA------TAC---GT-AGG-AGTA-T-TTA-CGACAA---A--CCTGGAC-CACT-GAC-AGA--GTTA---------C--GATCG-ATGT-T-GATAGT-A---A---ATTGCAAGTCAT-AACTTTTAGTGAAACG-GATGT-ACGT---GTTACG-TTA---GCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAAagtg
gi|7 : tttgacagtttgtcatcttttttcattacatgcaaacttcatgtattgtcccctacaactttttttattcagttttaggaaatgaaagtaatgacaacaaaattcaacgcttctggtgactggtatttatacacacaataaagttaaggatacAAAAG---TTAA---TGAAA-G--AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----TACATTTA-TTTTGGC--------C-AAGT-GGTATTTCATATATGATA--GA--AGGTC-ACTCTTCG---AA--TAA-AA-TTTTATATTC-G-GGCTCGGA-CTG--CA----GA-AT------AT-TCGT------------------GTAC-AAATGCAGACAGCAAA--ATCA----TTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC----AA-CA--G-AA----TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGCT--GGTTTAC------ATG------CAC---GT-AGG-AGTG-C-TTA-CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GATCA-ATAT-T-TGTCGT-A---A---ATAGCAAGTCGT-AACTTTTAGTGAAACG-GTCGT-AAGT---GCTACG-TTC---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAtacaccatctgtctgattagta
gi|8 : taAAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGTAT---AGGAAATATTATCCTGAATCAAACACA--GTTTAAATTA-TGGTTTATA--AA--TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTC-AAACAAA-TCATGAAAC--CACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|9 : TGGTGTATA-TTCTAAACA-GCATCCAAGATTTACCATTCCACG--GGACGGCTC-----ATCCACTTTT
gi|9 : GAGAGTAGAGAGAGAGA-GATGAAAATTAGGATTTTATATATAA--C---TCAGTTGGTAAA------------AGGTGAATT-AATCGT-Aatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT
Alignments
lowQualScore : 1 1 222222 1 11 1 11 222222222 11 1 1111 11111111 111 1 1111 11 11111 2222 22222222 2222 333333333333 11 1 1 3333333 222222 22 11 1 2 111 1 1 1 1111 44444 555555555555 11 111111 11 444444444444 2 111 111 222222 1111 11 11 1111 777777777777777777777777777777777777 111 333333333333 1111 111111 11111 111 2222222222 22222222222 22222222 2222222222 111 2222 111 111 1111 111 11 2222222222222222 444444444444444444 22222 1 2222222 11111111 111111 1111111 111111111 33333333 1111 11
lowQualScore : 1 0 0 888888 0 33 5 8 8 1 8 33 3 666666666 33 1 0 77 3 7777 3 22222222 9 2 9 3 3 333 5 4444 11 55555 7777 0 8 0 3 55555555 1111 444444444444 7 88 1 5 3 4444444 6 555555 6 6 0 0 5 8 00 11 0 0 3 3 8 1 0 3 11 3 44 0 11 111 0 99 55 0 8 88 0 6 0 8 0 8 4444 5 11111 6 111111111111 1 6 8 1 3 8 88 444444 22 99 111111111111 0 6 6 222 3 222 777777 6 6 4444 7777 3 0 11 55 5 88 1 8 5555 6 222222222222222222222222222222222222 111 6 777777777777 4444 1 999999 22 77777 000 9999 5 1111111111 1 4 77 11111111111 77 8 0 00000000 5 5 5555555555 8 222 0000 111 0 000 77 8888 0 1 444 77 77 0000000000000000 5 222222222222222222 5 4 5 77 00000 77 0 5 5 5 5 55 0 6666666 55 8 8888 4 55 4 4 33333333 55 888888 111111 5555 3 66 3 3 2 1111111 3 5 2 2 33 333333333 33 2 1 5 2 2 444 444 3 3 3 55555555 3 4444 00 4 4 66 4
lowQualScore : . . . ...... . .. . . . . . .. . ......... .. . . .. . .... . ........ . . . . . ... . .... .. ..... .... . . . . ........ .... ............ . .. . . . ....... . ...... . . . . . . .. .. . . . . . . . . .. . .. . .. ... . .. .. . . .. . . . . . . .... . ..... . ............ . . . . . . .. ...... .. .. ............ . . . ... . ... ...... . . .... .... . . .. .. . .. . . .... . .................................... ... . ............ .... . ...... .. ..... ... .... . .......... . . .. ........... .. . . ........ . . .......... . ... .... ... . ... .. .... . . ... .. .. ................ . .................. . . . .. ..... .. . . . . . .. . ....... .. . .... . .. . . ........ .. ...... ...... .... . .. . . . ....... . . . . .. ......... .. . . . . . ... ... . . . ........ . .... .. . . .. .
lowQualScore : 0 0 0 555555 0 88 5 0 0 4 0 88 2 222222222 88 0 0 55 2 8888 5 88888888 2 5 8 2 2 222 5 5555 00 44444 6666 6 0 8 2 00000000 4444 222222222222 3 33 7 5 3 0000000 7 888888 7 7 8 8 6 0 66 00 6 8 2 8 0 0 8 8 88 8 44 0 66 888 8 88 00 8 0 88 0 0 6 0 6 0 2222 0 22222 0 222222222222 0 8 0 0 6 0 66 444444 44 00 000000000000 4 7 7 222 5 333 555555 7 7 8888 7777 8 6 00 66 6 66 0 0 0000 7 888888888888888888888888888888888888 777 7 555555555555 2222 7 222222 99 44444 000 7777 7 4444444444 4 9 99 77777777777 99 7 7 77777777 7 7 0000000000 9 999 0000 999 1 000 99 7777 4 9 333 00 99 4444444444444444 7 111111111111111111 7 3 0 99 00000 44 0 0 0 0 0 55 6 5555555 55 0 5555 0 55 0 0 22222222 00 888888 999999 5555 1 66 1 1 9 8888888 5 7 7 7 77 333333333 77 7 0 3 7 7 777 777 3 3 6 88888888 3 8888 00 0 0 11 4
consensus : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-AT---NAT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( family-551 ) : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-AT---NAT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATAAGAATTTAAAAAATAT--AAGGATAAAA-TAAAACGAATTGATAATGAA-TTAAA-TCAA----A-AAAATA-CAAACCAAAGT-TAAAAAA--AAAGA---T-GAT----AACAAAAAA-T-TTGCACTCGTGA----AGTA--ATAGGA--T------------CAAACACA--GTT-AAATCAATGGTT-AT---A---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGAAACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC----TTAC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAAACAG-ATCCAAGATTTA-C--T-CA--CAGACAGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNNNTATA-AATTTGATTTTAT--ATAAAGATAGTGGTAAAAGGTGAATT-AATCGT-AAG-TTA--TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACACAC--CA--------CAC-ACACTTTG-AT---TAT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTC---TAT-GT----------TGGCT----TTTTTTTT------TTTT--AAGT--TCAA---TG--AAG--AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----T-----AC--ATTTTATTTGG--------GTCAA-TGCA----------TACGGT--AGA----AGG-T-AACTTTTTACACAT--TAAGAG-TTTCGTAATC-G-GGCTCGG-ACTG--C-----TT-A-------TT-TCGT------------------GTGCAAAATGCAGACAGC--A--GTC----ATTG--TTTCTACT-T-CATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATAC----G--TAACA-AA----TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATCG--------GTCT--TGTTTAC------GTGC-----CAC---GT-AGG-AGTG---CTACCGTCAG---C--CTGGAAT-CACTGCGTCAGA--GTTAG--------C--GATCGCATTT-TGGGTCGTAA---A---ATCGCCAGTCGTAAACTGTTA-TG-AAAGCGGTCGTA---T-GTGC-ACGCTTC---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGG
gi|10 : agtAAAT--TATACTATCA--CA--A-AA----TGAT-CCCAGGCCGG--GCC------AAC-AGCTAACT--------TAC-------------------------CAC---A---------G-C-CTA-----------------GAC-CACT-TGT-AGA--GTTA---------C--GATTG-ATAT-T-ATTCGT-A---A---ATCGCATGTTGC-AACTATTAGTG-AAA-CGGCCGT-AGGT---GCTACG-TT-------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACG
gi|11 : CATTT--------TGCT--CCTTTAC------CTG------CAT---AT-AGG-AGCA-C-CTG-TGACAG---C--CTTGGAC-CATT-CAT-AGAGTGTTAAAAGCATATT--GATCA-ATAC-T-GGTTGT-A---A---ATCACAAGTCCT-CACTTTTAGTG-AAA-TGGTTGTA---T-GTGTTGCA-TTC---ATGTTTA--TGTCT-ATGCTTTACAAaccctct
gi|12 : AAT--ACTACC---A--CA--A-AA----TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGCTCTTGTTACC------GTGATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTAC--CTGGAAC-ATCT-CGT-AGG--GTTA---------CTTAA--G-AACT-T-GGTCGT-A---G---ATC
gi|13 : CT-CGT-AGA---TTA---------C--GATCG-TGGT-T-GGTCGT-A---A---ATCGCAAGTCGT-A-CTTTTAGTG-AAA-CGG-CGTAAAGT-G--CTACG-TT----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|14 : caggtaagatgtaaaatgtgtCCACT-TC--TCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC----AAGCG--A-GAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TGC---TGGTTAC------GTG------CAC---GTGAGG-AGCG-CGCTA-CGACAG---C--Ccc
gi|16 : cacAAT------------CAAACACA--GTTTAAGTCA-TGGTT-ATAATA---TGCATACA-TCGTTTGCT--TAT------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|17 : cctgAC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCA
gi|18 : AC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|19 : --CCAGGAC-CACT-CGT-AGA--GTTA---------C--GATAG-AAGT-T-GGTCGT-ACTTAAATATCGCAAGTCGT-AACTTTTAGTG-cg
gi|2 : agTAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-AT---AAT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|20 : AATCGT-AAATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCC
gi|21 : -CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GGTCA-ATAT-T-TCTCGT-A---A---ATCGCAAGTCGC-AACTTT
gi|22 : -GTTACG-TTT---CTGTTTC--TGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTC
gi|23 : TT-CATTGATTTT-CATGAAACAAAATCGATACGA-Accg
gi|24 : TAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---AT
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-AT---AAT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAGA--TATATGCGTGAATCCTATCAA-GTCGAGTAAATCAT-----------ATTCACAGAAT---------------TAAAA--------TAATGAATTTAAAATCAATGA--CAAAATA-CAAACCCA--AATAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGTAT---AGAGAAT------------CAAACACA--GTTCAAATCA-TGGTTTATA--AGTATGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAAA-TCAT-AAAC--CACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CC-ATAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA-TT--AAACAGGATCCAAAATTTA-C-TC-CAGACGGAC-GGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATA-GAGTTTCATATCTTATATA-AA--CGA-TGAGTG-GTAAA------------AGTGGAATT-AATCGTAAAG-GTTAT--AGGCTC-GGTACCTGAA----AACGTC---CGT-A-GCGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-CAC-ACATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC----AT-GT-----------GCCT----TTTTT--------------AAAG---T-AA---TGAAAGA--AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCT-----AC--ATTTA--TTGG--------GCC-A-TG-G----------TAC-GT--AGAAT--AAG-T-CACTTTTTA---CCGATAA-A--------AATC---GGCTCGG-ACTG--CA----TTAAT------TA-TCGCCAACATCACATCAGTACAGTGC-CAATGCAGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACA---A--CA--A-AA----AGAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGGAAGCACC-CTA-CGACAG------GCAAGAT-CACT-CGT-AGA--G-TA---------C--GATCG--TTT-T-TGTCGT-A---A---ATCGCAAGTCGT-AAC-TTTAGTGAAAA-CAGTCGTTAAGT---GCTACG-TTC---AT-------TGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|5 : -GTGAT-CAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACAT--CAACCCCCATTTTGACAACTTGCAT---CATTATTACA-------------T----------------GC----AAAGTTC---TAT-GTATTGCCCACTCCCCT----CTTTCCTC------CTTTAAAAAAAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----T-----AC--ATTTATTTTGGCCGACTCTGGC-ATTACA----------CATGATAAAGA----AGGAT-AAC--TCTA---AT--T---AA-TTTCATATTG-G-GGCTCGG-ACTG--CCCGTTGT-ATTCCGAATT-TCGT------------------GTG---AATGCGGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTACA---A--CA--A-AA----TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGCT--TGTTTACGTACATGTA------CAC---GT-AGG-TGCA-C-TTA-CGACAA---C--CT-GGAC-CACT-CGT-AGA--ATTA---------C--GATCG-ATAT-T-GGTCGT-A---A---ATCGCAGGTCGT-AACTTTTAGTG-AAA-CGGTCGT-TCGT---GCTACG-TTT---ACGATCG--CGTtcc
gi|6 : t-ATTACA-------------T----------------GC----AAACTTCATGTATTGT----------CCCCTACAACTTTTTTTATTCAGTTTTA---G---GAAA---TGAAAGT--AA----TGA----CAA---------------CAA--AATTCAACG-C--TT-----CTGGTGACTGGT---ATTT--------------A-TACA----------CACAAT--AAAGTTAAGG-A-TACTCT--A---AT--CAA----TTTCAT--CC-GCGGATTGGA-CTGTACA----AT-AT------TTCTC---------------------TAC-AATTGCAGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC----AG-CA--A-AA----TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TACT--CGTTTAT------TTA------TAC---GT-AGG-AGTA-T-TTA-CGACAA---A--CCTGGAC-CACT-GAC-AGA--GTTA---------C--GATCG-ATGT-T-GATAGT-A---A---ATTGCAAGTCAT-AACTTTTAGTG-AAA-CGGATGT-ACGT---GTTACG-TTA---GCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAAagtg
gi|7 : tttgacagtttgtcatcttttttcAAAAG---TTAA---TGAAA-G--AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----T-----AC--ATTTA-TTTTG--------GCC-A-AGTGGTATTTCATATATGAT--AGA----AGG-T-CACTCTTCG---AA--TAA-AA-TTTTATATTC-G-GGCTCGGA-CTG--CA----GA-AT------AT-TCGT------------------GTAC-AAATGCAGACAGCAAA--ATCA----TTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC----AA-CA--G-AA----TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGCT--GGTTTAC------ATG------CAC---GT-AGG-AGTG-C-TTA-CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GATCA-ATAT-T-TGTCGT-A---A---ATAGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAtacaccatctgtctgattagta
gi|8 : taAAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGTAT---AGGAAATATTATCCTGAATCAAACACA--GTTTAAATTA-TGGTTTATA--AA--TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTCAAA-CAAA-TCATGAAAC--CACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|9 : TGGTGTATA-TTCTAAACAGCATCCAAGATTTACCATTCCA--CGGGACGGCTC-----ATCCACTTTT
gi|9 : GAGAGTAGAGAGAGAG-AGATGAAAATTAGG-ATTTTATATATAA--C---TCAGTTGGTAAA------------AGGTGAATT-AATCGT-Aatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT
Alignments
lowQualScore : 1 1 222222 1 11 1 11 222222222 11 1 111111 11111111 111 1 1111 11 11111 2222 22222222 2222 333333333333 11 1 1 3333333 222222 22 11 1 2 111 1 1 1 1111 44444 555555555555 11 111111 1111 444444444444 1 111 111 222222 1111 111111 11 1111 777777777777777777777777777777777777 111 333333333333 1111 111111 111 111 2222222222 22222222222 22222222 2222222222 111 2222 111 111 1111 111 11 2222222222222222 444444444444444444 22222 1 2222222 11111111 111111 1111111 111111111 33333333 1111 11
lowQualScore : 1 0 0 888888 0 33 5 8 8 1 8 33 3 666666666 33 1 0 77 888888 1 22222222 9 2 9 3 3 333 5 4444 11 55555 7777 0 8 0 3 55555555 1111 444444444444 7 88 1 5 3 4444444 6 555555 6 6 0 0 5 8 00 11 0 0 3 3 8 1 0 3 11 3 44 0 11 111 0 99 55 0 8 88 0 6 0 8 0 8 4444 5 11111 6 111111111111 1 6 8 1 3 8 88 444444 22 2222 111111111111 0 8 6 222 3 3 222 777777 6 6 4444 7777 3 0 111111 5 88 1 8 5555 6 222222222222222222222222222222222222 111 6 777777777777 4444 1 999999 22 555 000 9999 5 1111111111 1 4 77 11111111111 77 8 0 00000000 5 5 5555555555 8 222 0000 111 0 000 77 8888 0 1 444 77 77 0000000000000000 5 222222222222222222 5 4 5 77 00000 77 0 5 5 5 5 55 0 6666666 55 8 8888 4 55 4 4 33333333 55 888888 111111 5555 3 66 3 3 2 1111111 3 5 2 2 33 333333333 33 2 1 5 2 2 444 444 3 3 3 55555555 3 4444 00 4 4 66 4
lowQualScore : . . . ...... . .. . . . . . .. . ......... .. . . .. ...... . ........ . . . . . ... . .... .. ..... .... . . . . ........ .... ............ . .. . . . ....... . ...... . . . . . . .. .. . . . . . . . . .. . .. . .. ... . .. .. . . .. . . . . . . .... . ..... . ............ . . . . . . .. ...... .. .... ............ . . . ... . . ... ...... . . .... .... . . ...... . .. . . .... . .................................... ... . ............ .... . ...... .. ... ... .... . .......... . . .. ........... .. . . ........ . . .......... . ... .... ... . ... .. .... . . ... .. .. ................ . .................. . . . .. ..... .. . . . . . .. . ....... .. . .... . .. . . ........ .. ...... ...... .... . .. . . . ....... . . . . .. ......... .. . . . . . ... ... . . . ........ . .... .. . . .. .
lowQualScore : 0 0 0 555555 0 88 5 0 0 4 0 88 2 222222222 88 0 0 55 000000 0 88888888 2 5 8 2 2 222 5 5555 00 44444 6666 6 0 8 2 00000000 4444 222222222222 3 33 7 5 3 0000000 7 888888 7 7 8 8 6 0 66 00 6 8 2 8 0 0 8 8 88 8 44 0 66 888 8 88 00 8 0 88 0 0 6 0 6 0 2222 0 22222 0 222222222222 0 8 0 0 6 0 66 444444 44 2222 000000000000 6 0 7 222 7 5 333 555555 7 7 8888 7777 8 6 666666 6 66 0 0 0000 7 888888888888888888888888888888888888 777 7 555555555555 2222 7 222222 99 777 000 7777 7 4444444444 4 9 99 77777777777 99 7 7 77777777 7 7 0000000000 9 999 0000 999 1 000 99 7777 4 9 333 00 99 4444444444444444 7 111111111111111111 7 3 0 99 00000 44 0 0 0 0 0 55 6 5555555 55 0 5555 0 55 0 0 22222222 00 888888 999999 5555 1 66 1 1 9 8888888 5 7 7 7 77 333333333 77 7 0 3 7 7 777 777 3 3 6 88888888 3 8888 00 0 0 11 4
consensus : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--G-TAAA------------AGGTGAATTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACACCACCC--CCCATCAC-ACAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( family-551 ) : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--G-TAAA------------AGGTGAATTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACACCACCC--CCCATCAC-ACAATTTG-ATN---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATAAGAATTTAAAAAATAT--AAGGATAAAA-TAAAACGAATTGATAATGAA-TTAAA-TCAA----A-AAAATA-CAAACCAAAGT-TAAAAAA--AAAGA---T-GAT----AACAAAAAA-T-TTGCACTCGTGA----AGTA--ATAGGA--T------------CAAACACA--GTT-AAATCAATGGTT-AT---A---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGAAACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC----TTAC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAAACAG-ATCCAAGATTTA-C--T-CA--CAGACAGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNNNTATA-AATTTGATTTTAT--A-TAAAGATAGTGGTAAAAGGTGAATT-AATCGTAA-G-TTA--TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACACACCA----------CAC-ACACTTTG-ATT---AT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTC---TAT-GT----------TGGCT----TTTTTTTT------TTTT--AAGT--TCAA---TG--AAG--AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----T-----AC--ATTTTATTTGG--------GTCAA-TGCA----------TACGGT--AGA----AGG-T-AACTTTTTACACAT--TAAGAG-TTTCGTAATC-G-GGCTCGG-ACTG--C-----TT-A-------TT-TCGT------------------GTGCAAAATGCAGACAGC--A--GTC----ATTG--TTTCTACT-T-CATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATAC----G--TAACA-AA----TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATCG--------GTCT--TGTTTAC------GTGC-----CAC---GT-AGG-AGTG---CTACCGTCAG---C--CTGGAAT-CACTGCGTCAGA--GTTAG--------C--GATCGCATTT-TGGGTCGTAA---A---ATCGCCAGTCGTAAACTGTTA-TG-AAAGCGGTCGTA---T-GTGC-ACGCTTC---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGG
gi|10 : agtAAAT--TATACTATCA--CA--A-AA----TGAT-CCCAGGCCGG--GCC------AAC-AGCTAACT--------TAC-------------------------CAC---A---------G-C-CTA-----------------GAC-CACT-TGT-AGA--GTTA---------C--GATTG-ATAT-T-ATTCGT-A---A---ATCGCATGTTGC-AACTATTAGTG-AAA-CGGCCGT-AGGT---GCTACG-TT-------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACG
gi|11 : CATTT--------TGCT--CCTTTAC------CTG------CAT---AT-AGG-AGCA-C-CTG-TGACAG---C--CTTGGAC-CATT-CAT-AGAGTGTTAAAAGCATATT--GATCA-ATAC-T-GGTTGT-A---A---ATCACAAGTCCT-CACTTTTAGTG-AAA-TGGTTGTA---T-GTGTTGCA-TTC---ATGTTTA--TGTCT-ATGCTTTACAAaccctct
gi|12 : AAT--ACTACC---A--CA--A-AA----TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGCTCTTGTTACC------GTGATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTAC--CTGGAAC-ATCT-CGT-AGG--GTTA---------CTTAA--G-AACT-T-GGTCGT-A---G---ATC
gi|13 : CT-CGT-AGA---TTA---------C--GATCG-TGGT-T-GGTCGT-A---A---ATCGCAAGTCGT-A-CTTTTAGTG-AAA-CGG-CGTAAAGT-G--CTACG-TT----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|14 : caggtaagatgtaaaatgtgtCCACT-TC--TCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC----AAGCG--A-GAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TGC---TGGTTAC------GTG------CAC---GTGAGG-AGCG-CGCTA-CGACAG---C--Ccc
gi|16 : cacAAT------------CAAACACA--GTTTAAGTCA-TGGTT-ATAATA---TGCATACA-TCGTTTGCT--TAT------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|17 : cctgAC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCA
gi|18 : AC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|19 : --CCAGGAC-CACT-CGT-AGA--GTTA---------C--GATAG-AAGT-T-GGTCGT-ACTTAAATATCGCAAGTCGT-AACTTTTAGTG-cg
gi|2 : agTAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--G-TAAA------------AGGTGAATTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCCCCCCC--CCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|20 : AATCGTAA-ATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCC
gi|21 : -CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GGTCA-ATAT-T-TCTCGT-A---A---ATCGCAAGTCGC-AACTTT
gi|22 : -GTTACG-TTT---CTGTTTC--TGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTC
gi|23 : TT-CATTGATTTT-CATGAAACAAAATCGATACGA-Accg
gi|24 : TAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---AT
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--G-TAAA------------AGGTGAATTAAATCGTAA-G-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCCCCCCC--CCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAGA--TATATGCGTGAATCCTATCAA-GTCGAGTAAATCATA-----------TTCACAGAAT---------------TAAAA--------TAATGAATTTAAAATCAATGA--CAAAATA-CAAACCCA--AATAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGTAT---AGAGAAT------------CAAACACA--GTTCAAATCA-TGGTTTATA--AGTATGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAAA-TCAT-AAAC--CACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CC-ATAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA-TT--AAACAGGATCCAAAATTTA-C-TC-CAGACGGAC-GGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATA-GAGTTTCATATCTTATATA-AA--CGA-TGAGT--GGTAAA------------AGTGGAATTAA-TCGTAAAG-GTTAT--AGGCTCGG-TACCTGAA----AACGTC---CGT-AG-CGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-CAC-ACATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC----AT-GT-----------GCCT----TTTTT--------------AAAG---TAA----TGAAAGA--AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCT-----AC--ATTTA--TTGG--------GCC-A-TG-G----------TAC-GT--AGAAT--AAG-T-CACTTTTTA---CCGATAA-A--------AATC---GGCTCGG-ACTG--CA----TTAAT------TA-TCGCCAACATCACATCAGTACAGTGC-CAATGCAGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACA---A--CA--A-AA----AGAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGGAAGCACC-CTA-CGACAG------GCAAGAT-CACT-CGT-AGA--G-TA---------C--GATCG--TTT-T-TGTCGT-A---A---ATCGCAAGTCGT-AAC-TTTAGTGAAAA-CAGTCGTTAAGT---GCTACG-TTC---AT-------TGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|5 : -GTGAT-CAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACATCAACC--CCCATTTTGACAACTTGCATC---ATTATTACA-------------T----------------GC----AAAGTTC---TAT-GTATTGCCCACTCCCCT----CTTTCCTC------CTTTAAAAAAAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----T-----AC--ATTTATTTTGGCCGACTCTGGC-ATTACA----------CATGATAAAGA----AGGAT-AAC--TCTA---AT--T---AA-TTTCATATTG-G-GGCTCGG-ACTG--CCCGTTGT-ATTCCGAATT-TCGT------------------GTG---AATGCGGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTACA---A--CA--A-AA----TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGCT--TGTTTACGTACATGTA------CAC---GT-AGG-TGCA-C-TTA-CGACAA---C--CT-GGAC-CACT-CGT-AGA--ATTA---------C--GATCG-ATAT-T-GGTCGT-A---A---ATCGCAGGTCGT-AACTTTTAGTG-AAA-CGGTCGT-TCGT---GCTACG-TTT---ACGATCG--CGTtcc
gi|6 : t-ATTACA-------------T----------------GC----AAACTTCATGTATTGT----------CCCCTACAACTTTTTTTATTCAGTTTTA---G---GAAA---TGAAAGT--AA----TGA----CAA---------------CAA--AATTCAACG-C--TT-----CTGGTGACTGGT---ATTT--------------A-TACA----------CACAAT--AAAGTTAAGG-A-TACTCT--A---AT--CAA----TTTCAT--CC-GCGGATTGGA-CTGTACA----AT-AT------TTCTC---------------------TAC-AATTGCAGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC----AG-CA--A-AA----TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TACT--CGTTTAT------TTA------TAC---GT-AGG-AGTA-T-TTA-CGACAA---A--CCTGGAC-CACT-GAC-AGA--GTTA---------C--GATCG-ATGT-T-GATAGT-A---A---ATTGCAAGTCAT-AACTTTTAGTG-AAA-CGGATGT-ACGT---GTTACG-TTA---GCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAAagtg
gi|7 : tttgacagtttgtcatcttttttcAAAAG---TTAA---TGAAA-G--AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----T-----AC--ATTTA-TTTTG--------GCC-A-AGTGGTATTTCATATATGAT--AGA----AGG-T-CACTCTTCG---AA--TAA-AA-TTTTATATTC-G-GGCTCGGA-CTG--CA----GA-AT------AT-TCGT------------------GTAC-AAATGCAGACAGCAAA--ATCA----TTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC----AA-CA--G-AA----TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGCT--GGTTTAC------ATG------CAC---GT-AGG-AGTG-C-TTA-CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GATCA-ATAT-T-TGTCGT-A---A---ATAGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAtacaccatctgtctgattagta
gi|8 : taAAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGTAT---AGGAAATATTATCCTGAATCAAACACA--GTTTAAATTA-TGGTTTATA--AA--TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTCAAA-CAAA-TCATGAAAC--CACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|9 : TGGTGTATA-TTCTAAACAGCATCCAAGATTTACCATTCCA--CGGGACGGCTC-----ATCCACTTTT
gi|9 : GAGAGTAGAGAGAGAG-AGATGAAAATTAGG-ATTTTATATATAA--C---TCAGTTGG-TAAA------------AGGTGAATT-AATCGTAatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT
Alignments
lowQualScore : 1 1 222222 1 11 1 11 222222222 11 1 111111 11111111 111 1 1111 11 11111 2222 22222222 2222 333333333333 11 1 1 3333333 222222 22 11 1 2 111 1 1 1 1111 44444 555555555555 11 111111 11 444444444444 2 111 111 222222 1111 11 11 1111 777777777777777777777777777777777777 111 333333333333 1111 111111 11111 111 2222222222 22222222222 22222222 2222222222 111 2222 111 111 1111 111 11 2222222222222222 444444444444444444 22222 1 2222222 11111111 111111 1111111 111111111 33333333 1111 11
lowQualScore : 1 0 0 888888 0 33 5 8 8 1 8 33 3 666666666 33 1 0 77 888888 1 22222222 9 2 9 3 3 333 5 4444 11 55555 7777 0 8 0 3 55555555 1111 444444444444 7 88 1 5 3 4444444 6 555555 6 6 0 0 5 8 00 11 0 0 3 3 8 1 0 3 11 3 44 0 11 111 0 99 55 0 8 88 0 6 0 8 0 8 4444 5 11111 6 111111111111 1 6 8 1 3 8 88 444444 22 99 111111111111 0 6 6 222 3 222 777777 6 6 4444 7777 3 0 11 55 5 88 1 8 5555 6 222222222222222222222222222222222222 111 6 777777777777 4444 1 999999 22 77777 000 9999 5 1111111111 1 4 77 11111111111 77 8 0 00000000 5 5 5555555555 8 222 0000 111 0 000 77 8888 0 1 444 77 77 0000000000000000 5 222222222222222222 5 4 5 77 00000 77 0 5 5 5 5 55 0 6666666 55 8 8888 4 55 4 4 33333333 55 888888 111111 5555 3 66 3 3 2 1111111 3 5 2 2 33 333333333 33 2 1 5 2 2 444 444 3 3 3 55555555 3 4444 00 4 4 66 4
lowQualScore : . . . ...... . .. . . . . . .. . ......... .. . . .. ...... . ........ . . . . . ... . .... .. ..... .... . . . . ........ .... ............ . .. . . . ....... . ...... . . . . . . .. .. . . . . . . . . .. . .. . .. ... . .. .. . . .. . . . . . . .... . ..... . ............ . . . . . . .. ...... .. .. ............ . . . ... . ... ...... . . .... .... . . .. .. . .. . . .... . .................................... ... . ............ .... . ...... .. ..... ... .... . .......... . . .. ........... .. . . ........ . . .......... . ... .... ... . ... .. .... . . ... .. .. ................ . .................. . . . .. ..... .. . . . . . .. . ....... .. . .... . .. . . ........ .. ...... ...... .... . .. . . . ....... . . . . .. ......... .. . . . . . ... ... . . . ........ . .... .. . . .. .
lowQualScore : 0 0 0 555555 0 88 5 0 0 4 0 88 2 222222222 88 0 0 55 000000 0 88888888 2 5 8 2 2 222 5 5555 00 44444 6666 6 0 8 2 00000000 4444 222222222222 3 33 7 5 3 0000000 7 888888 7 7 8 8 6 0 66 00 6 8 2 8 0 0 8 8 88 8 44 0 66 888 8 88 00 8 0 88 0 0 6 0 6 0 2222 0 22222 0 222222222222 0 8 0 0 6 0 66 444444 44 00 000000000000 4 7 7 222 5 333 555555 7 7 8888 7777 8 6 00 66 6 66 0 0 0000 7 888888888888888888888888888888888888 777 7 555555555555 2222 7 222222 99 44444 000 7777 7 4444444444 4 9 99 77777777777 99 7 7 77777777 7 7 0000000000 9 999 0000 999 1 000 99 7777 4 9 333 00 99 4444444444444444 7 111111111111111111 7 3 0 99 00000 44 0 0 0 0 0 55 6 5555555 55 0 5555 0 55 0 0 22222222 00 888888 999999 5555 1 66 1 1 9 8888888 5 7 7 7 77 333333333 77 7 0 3 7 7 777 777 3 3 6 88888888 3 8888 00 0 0 11 4
consensus : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( family-551 ) : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATAAGAATTTAAAAAATAT--AAGGATAAAA-TAAAACGAATTGATAATGAA-TTAAA-TCAA----A-AAAATA-CAAACCAAAGT-TAAAAAA--AAAGA---T-GAT----AACAAAAAA-T-TTGCACTCGTGA----AGTA--ATAGGA--T------------CAAACACA--GTT-AAATCAATGGTT-AT---A---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGAAACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC----TTAC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAAACAG-ATCCAAGATTTA-C--T-CA--CAGACAGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNNNTATA-AATTTGATTTTAT--ATAAAGATAGTGGTAAAAGGTGAATT-AATCGT-AAG-TTA--TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACACAC--CA--------CAC-ACACTTTG-ATT---AT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTC---TAT-GT----------TGGCT----TTTTTTTT------TTTT--AAGT--TCAA---TG--AAG--AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----T-----AC--ATTTTATTTGG--------GTCAA-TGCA----------TACGGT--AGA----AGG-T-AACTTTTTACACAT--TAAGAG-TTTCGTAATC-G-GGCTCGG-ACTG--C-----TT-A-------TT-TCGT------------------GTGCAAAATGCAGACAGC--A--GTC----ATTG--TTTCTACT-T-CATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATAC----G--TAACA-AA----TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATCG--------GTCT--TGTTTAC------GTGC-----CAC---GT-AGG-AGTG---CTACCGTCAG---C--CTGGAAT-CACTGCGTCAGA--GTTAG--------C--GATCGCATTT-TGGGTCGTAA---A---ATCGCCAGTCGTAAACTGTTA-TG-AAAGCGGTCGTA---T-GTGC-ACGCTTC---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGG
gi|10 : agtAAAT--TATACTATCA--CA--A-AA----TGAT-CCCAGGCCGG--GCC------AAC-AGCTAACT--------TAC-------------------------CAC---A---------G-C-CTA-----------------GAC-CACT-TGT-AGA--GTTA---------C--GATTG-ATAT-T-ATTCGT-A---A---ATCGCATGTTGC-AACTATTAGTG-AAA-CGGCCGT-AGGT---GCTACG-TT-------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACG
gi|11 : CATTT--------TGCT--CCTTTAC------CTG------CAT---AT-AGG-AGCA-C-CTG-TGACAG---C--CTTGGAC-CATT-CAT-AGAGTGTTAAAAGCATATT--GATCA-ATAC-T-GGTTGT-A---A---ATCACAAGTCCT-CACTTTTAGTG-AAA-TGGTTGTA---T-GTGTTGCA-TTC---ATGTTTA--TGTCT-ATGCTTTACAAaccctct
gi|12 : AAT--ACTACC---A--CA--A-AA----TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGCTCTTGTTACC------GTGATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTAC--CTGGAAC-ATCT-CGT-AGG--GTTA---------CTTAA--G-AACT-T-GGTCGT-A---G---ATC
gi|13 : CT-CGT-AGA---TTA---------C--GATCG-TGGT-T-GGTCGT-A---A---ATCGCAAGTCGT-A-CTTTTAGTG-AAA-CGG-CGTAAAGT-G--CTACG-TT----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|14 : caggtaagatgtaaaatgtgtCCACT-TC--TCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC----AAGCG--A-GAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TGC---TGGTTAC------GTG------CAC---GTGAGG-AGCG-CGCTA-CGACAG---C--Ccc
gi|16 : cacAAT------------CAAACACA--GTTTAAGTCA-TGGTT-ATAATA---TGCATACA-TCGTTTGCT--TAT------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|17 : cctgAC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCA
gi|18 : AC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|19 : --CCAGGAC-CACT-CGT-AGA--GTTA---------C--GATAG-AAGT-T-GGTCGT-ACTTAAATATCGCAAGTCGT-AACTTTTAGTG-cg
gi|2 : agTAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|20 : AATCGT-AAATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCC
gi|21 : -CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GGTCA-ATAT-T-TCTCGT-A---A---ATCGCAAGTCGC-AACTTT
gi|22 : -GTTACG-TTT---CTGTTTC--TGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTC
gi|23 : TT-CATTGATTTT-CATGAAACAAAATCGATACGA-Accg
gi|24 : TAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---AT
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAGA--TATATGCGTGAATCCTATCAA-GTCGAGTAAATCATA-----------TTCACAGAAT---------------TAAAA--------TAATGAATTTAAAATCAATGA--CAAAATA-CAAACCCA--AATAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGTAT---AGAGAAT------------CAAACACA--GTTCAAATCA-TGGTTTATA--AGTATGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAAA-TCAT-AAAC--CACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CC-ATAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA-TT--AAACAGGATCCAAAATTTA-C-TC-CAGACGGAC-GGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATA-GAGTTTCATATCTTATATA-AA--CGA-TGAGTG-GTAAA------------AGTGGAATT-AATCGTAAAG-GTTAT--AGGCTC-GGTACCTGAA----AACGTC---CGT-A-GCGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-CAC-ACATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC----AT-GT-----------GCCT----TTTTT--------------AAAG---T-AA---TGAAAGA--AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCT-----AC--ATTTA--TTGG--------GCC-A-TG-G----------TAC-GT--AGAAT--AAG-T-CACTTTTTA---CCGATAA-A--------AATC---GGCTCGG-ACTG--CA----TTAAT------TA-TCGCCAACATCACATCAGTACAGTGC-CAATGCAGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACA---A--CA--A-AA----AGAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGGAAGCACC-CTA-CGACAG------GCAAGAT-CACT-CGT-AGA--G-TA---------C--GATCG--TTT-T-TGTCGT-A---A---ATCGCAAGTCGT-AAC-TTTAGTGAAAA-CAGTCGTTAAGT---GCTACG-TTC---AT-------TGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|5 : -GTGAT-CAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACAT--CAACCCCCATTTTGACAACTTGCATC---ATTATTACA-------------T----------------GC----AAAGTTC---TAT-GTATTGCCCACTCCCCT----CTTTCCTC------CTTTAAAAAAAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----T-----AC--ATTTATTTTGGCCGACTCTGGC-ATTACA----------CATGATAAAGA----AGGAT-AAC--TCTA---AT--T---AA-TTTCATATTG-G-GGCTCGG-ACTG--CCCGTTGT-ATTCCGAATT-TCGT------------------GTG---AATGCGGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTACA---A--CA--A-AA----TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGCT--TGTTTACGTACATGTA------CAC---GT-AGG-TGCA-C-TTA-CGACAA---C--CT-GGAC-CACT-CGT-AGA--ATTA---------C--GATCG-ATAT-T-GGTCGT-A---A---ATCGCAGGTCGT-AACTTTTAGTG-AAA-CGGTCGT-TCGT---GCTACG-TTT---ACGATCG--CGTtcc
gi|6 : t-ATTACA-------------T----------------GC----AAACTTCATGTATTGT----------CCCCTACAACTTTTTTTATTCAGTTTTA---G---GAAA---TGAAAGT--AA----TGA----CAA---------------CAA--AATTCAACG-C--TT-----CTGGTGACTGGT---ATTT--------------A-TACA----------CACAAT--AAAGTTAAGG-A-TACTCT--A---AT--CAA----TTTCAT--CC-GCGGATTGGA-CTGTACA----AT-AT------TTCTC---------------------TAC-AATTGCAGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC----AG-CA--A-AA----TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TACT--CGTTTAT------TTA------TAC---GT-AGG-AGTA-T-TTA-CGACAA---A--CCTGGAC-CACT-GAC-AGA--GTTA---------C--GATCG-ATGT-T-GATAGT-A---A---ATTGCAAGTCAT-AACTTTTAGTG-AAA-CGGATGT-ACGT---GTTACG-TTA---GCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAAagtg
gi|7 : tttgacagtttgtcatcttttttcAAAAG---TTAA---TGAAA-G--AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----T-----AC--ATTTA-TTTTG--------GCC-A-AGTGGTATTTCATATATGAT--AGA----AGG-T-CACTCTTCG---AA--TAA-AA-TTTTATATTC-G-GGCTCGGA-CTG--CA----GA-AT------AT-TCGT------------------GTAC-AAATGCAGACAGCAAA--ATCA----TTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC----AA-CA--G-AA----TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGCT--GGTTTAC------ATG------CAC---GT-AGG-AGTG-C-TTA-CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GATCA-ATAT-T-TGTCGT-A---A---ATAGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAtacaccatctgtctgattagta
gi|8 : taAAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGTAT---AGGAAATATTATCCTGAATCAAACACA--GTTTAAATTA-TGGTTTATA--AA--TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTCAAA-CAAA-TCATGAAAC--CACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|9 : TGGTGTATA-TTCTAAACAGCATCCAAGATTTACCATTCCA--CGGGACGGCTC-----ATCCACTTTT
gi|9 : GAGAGTAGAGAGAGAG-AGATGAAAATTAGG-ATTTTATATATAA--C---TCAGTTGGTAAA------------AGGTGAATT-AATCGT-Aatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT
Alignments
lowQualScore : 1 1 222222 1 11 1 11 222222222 11 1 111111 11111111 111 1 1111 11 11111 2222 22222222 2222 333333333333 11 1 1 3333333 222222 22 11 1 2 111 1 1 1 1111 44444 555555555555 11 111111 11 444444444444 2 111 111 222222 1111 11 11 1111 777777777777777777777777777777777777 111 333333333333 1111 111111 11111 111 2222222222 22222222222 22222222 2222222222 111 2222 111 111 1111 111 11 2222222222222222 444444444444444444 22222 1 2222222 11111111 111111 1111111 111111111 33333333 1111 11
lowQualScore : 1 0 0 888888 0 33 5 8 8 1 8 33 3 666666666 33 1 0 77 888888 1 22222222 9 2 9 3 3 333 5 4444 11 55555 7777 0 8 0 3 55555555 1111 444444444444 7 88 1 5 3 4444444 6 555555 6 6 0 0 5 8 00 11 0 0 3 3 8 1 0 3 11 3 44 0 11 111 0 99 55 0 8 88 0 6 0 8 0 8 4444 5 11111 6 111111111111 1 6 8 1 3 8 88 444444 22 99 111111111111 0 6 6 222 3 222 777777 6 6 4444 7777 3 0 11 55 5 88 1 8 5555 6 222222222222222222222222222222222222 111 6 777777777777 4444 1 999999 22 77777 000 9999 5 1111111111 1 4 77 11111111111 77 8 0 00000000 5 5 5555555555 8 222 0000 111 0 000 77 8888 0 1 444 77 77 0000000000000000 5 222222222222222222 5 4 5 77 00000 77 0 5 5 5 5 55 0 6666666 55 8 8888 4 55 4 4 33333333 55 888888 111111 5555 3 66 3 3 2 1111111 3 5 2 2 33 333333333 33 2 1 5 2 2 444 444 3 3 3 55555555 3 4444 00 4 4 66 4
lowQualScore : . . . ...... . .. . . . . . .. . ......... .. . . .. ...... . ........ . . . . . ... . .... .. ..... .... . . . . ........ .... ............ . .. . . . ....... . ...... . . . . . . .. .. . . . . . . . . .. . .. . .. ... . .. .. . . .. . . . . . . .... . ..... . ............ . . . . . . .. ...... .. .. ............ . . . ... . ... ...... . . .... .... . . .. .. . .. . . .... . .................................... ... . ............ .... . ...... .. ..... ... .... . .......... . . .. ........... .. . . ........ . . .......... . ... .... ... . ... .. .... . . ... .. .. ................ . .................. . . . .. ..... .. . . . . . .. . ....... .. . .... . .. . . ........ .. ...... ...... .... . .. . . . ....... . . . . .. ......... .. . . . . . ... ... . . . ........ . .... .. . . .. .
lowQualScore : 0 0 0 555555 0 88 5 0 0 4 0 88 2 222222222 88 0 0 55 000000 0 88888888 2 5 8 2 2 222 5 5555 00 44444 6666 6 0 8 2 00000000 4444 222222222222 3 33 7 5 3 0000000 7 888888 7 7 8 8 6 0 66 00 6 8 2 8 0 0 8 8 88 8 44 0 66 888 8 88 00 8 0 88 0 0 6 0 6 0 2222 0 22222 0 222222222222 0 8 0 0 6 0 66 444444 44 00 000000000000 4 7 7 222 5 333 555555 7 7 8888 7777 8 6 00 66 6 66 0 0 0000 7 888888888888888888888888888888888888 777 7 555555555555 2222 7 222222 99 44444 000 7777 7 4444444444 4 9 99 77777777777 99 7 7 77777777 7 7 0000000000 9 999 0000 999 1 000 99 7777 4 9 333 00 99 4444444444444444 7 111111111111111111 7 3 0 99 00000 44 0 0 0 0 0 55 6 5555555 55 0 5555 0 55 0 0 22222222 00 888888 999999 5555 1 66 1 1 9 8888888 5 7 7 7 77 333333333 77 7 0 3 7 7 777 777 3 3 6 88888888 3 8888 00 0 0 11 4
consensus : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( family-551 ) : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATAAGAATTTAAAAAATAT--AAGGATAAAA-TAAAACGAATTGATAATGAA-TTAAA-TCAA----A-AAAATA-CAAACCAAAGT-TAAAAAA--AAAGA---T-GAT----AACAAAAAA-T-TTGCACTCGTGA----AGTA--ATAGGA--T------------CAAACACA--GTT-AAATCAATGGTT-AT---A---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGAAACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC----TTAC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAAACAG-ATCCAAGATTTA-C--T-CA--CAGACAGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNNNTATA-AATTTGATTTTAT--ATAAAGATAGTGGTAAAAGGTGAATT-AATCGT-AAG-TTA--TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACACAC--CA--------CAC-ACACTTTG-ATT---AT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTC---TAT-GT----------TGGCT----TTTTTTTT------TTTT--AAGT--TCAA---TG--AAG--AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----T-----AC--ATTTTATTTGG--------GTCAA-TGCA----------TACGGT--AGA----AGG-T-AACTTTTTACACAT--TAAGAG-TTTCGTAATC-G-GGCTCGG-ACTG--C-----TT-A-------TT-TCGT------------------GTGCAAAATGCAGACAGC--A--GTC----ATTG--TTTCTACT-T-CATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATAC----G--TAACA-AA----TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATCG--------GTCT--TGTTTAC------GTGC-----CAC---GT-AGG-AGTG---CTACCGTCAG---C--CTGGAAT-CACTGCGTCAGA--GTTAG--------C--GATCGCATTT-TGGGTCGTAA---A---ATCGCCAGTCGTAAACTGTTA-TG-AAAGCGGTCGTA---T-GTGC-ACGCTTC---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGG
gi|10 : agtAAAT--TATACTATCA--CA--A-AA----TGAT-CCCAGGCCGG--GCC------AAC-AGCTAACT--------TAC-------------------------CAC---A---------G-C-CTA-----------------GAC-CACT-TGT-AGA--GTTA---------C--GATTG-ATAT-T-ATTCGT-A---A---ATCGCATGTTGC-AACTATTAGTG-AAA-CGGCCGT-AGGT---GCTACG-TT-------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACG
gi|11 : CATTT--------TGCT--CCTTTAC------CTG------CAT---AT-AGG-AGCA-C-CTG-TGACAG---C--CTTGGAC-CATT-CAT-AGAGTGTTAAAAGCATATT--GATCA-ATAC-T-GGTTGT-A---A---ATCACAAGTCCT-CACTTTTAGTG-AAA-TGGTTGTA---T-GTGTTGCA-TTC---ATGTTTA--TGTCT-ATGCTTTACAAaccctct
gi|12 : AAT--ACTACC---A--CA--A-AA----TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGCTCTTGTTACC------GTGATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTAC--CTGGAAC-ATCT-CGT-AGG--GTTA---------CTTAA--G-AACT-T-GGTCGT-A---G---ATC
gi|13 : CT-CGT-AGA---TTA---------C--GATCG-TGGT-T-GGTCGT-A---A---ATCGCAAGTCGT-A-CTTTTAGTG-AAA-CGG-CGTAAAGT-G--CTACG-TT----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|14 : caggtaagatgtaaaatgtgtCCACT-TC--TCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC----AAGCG--A-GAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TGC---TGGTTAC------GTG------CAC---GTGAGG-AGCG-CGCTA-CGACAG---C--Ccc
gi|16 : cacAAT------------CAAACACA--GTTTAAGTCA-TGGTT-ATAATA---TGCATACA-TCGTTTGCT--TAT------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|17 : cctgAC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCA
gi|18 : AC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|19 : --CCAGGAC-CACT-CGT-AGA--GTTA---------C--GATAG-AAGT-T-GGTCGT-ACTTAAATATCGCAAGTCGT-AACTTTTAGTG-cg
gi|2 : agTAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|20 : AATCGT-AAATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCC
gi|21 : -CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GGTCA-ATAT-T-TCTCGT-A---A---ATCGCAAGTCGC-AACTTT
gi|22 : -GTTACG-TTT---CTGTTTC--TGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTC
gi|23 : TT-CATTGATTTT-CATGAAACAAAATCGATACGA-Accg
gi|24 : TAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---AT
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATACTACTCA-GTTGAGTAAATCATATTC---AAGAATTAAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTA-CATT-AA--C-GGCCGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TGT-G-----------CGCCT----TTTTTTTT------TTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA----AGG-TCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC----A--CA--ACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAGA--TATATGCGTGAATCCTATCAA-GTCGAGTAAATCATA-----------TTCACAGAAT---------------TAAAA--------TAATGAATTTAAAATCAATGA--CAAAATA-CAAACCCA--AATAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGTAT---AGAGAAT------------CAAACACA--GTTCAAATCA-TGGTTTATA--AGTATGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAAA-TCAT-AAAC--CACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CC-ATAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA-TT--AAACAGGATCCAAAATTTA-C-TC-CAGACGGAC-GGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATA-GAGTTTCATATCTTATATA-AA--CGA-TGAGTG-GTAAA------------AGTGGAATT-AATCGTAAAG-GTTAT--AGGCTC-GGTACCTGAA----AACGTC---CGT-A-GCGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-CAC-ACATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC----AT-GT-----------GCCT----TTTTT--------------AAAG---T-AA---TGAAAGA--AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCT-----AC--ATTTA--TTGG--------GCC-A-TG-G----------TAC-GT--AGAAT--AAG-T-CACTTTTTA---CCGATAA-A--------AATC---GGCTCGG-ACTG--CA----TTAAT------TA-TCGCCAACATCACATCAGTACAGTGC-CAATGCAGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACA---A--CA--A-AA----AGAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGGAAGCACC-CTA-CGACAG------GCAAGAT-CACT-CGT-AGA--G-TA---------C--GATCG--TTT-T-TGTCGT-A---A---ATCGCAAGTCGT-AAC-TTTAGTGAAAA-CAGTCGTTAAGT---GCTACG-TTC---AT-------TGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|5 : -GTGAT-CAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACAT--CAACCCCCATTTTGACAACTTGCATC---ATTATTACA-------------T----------------GC----AAAGTTC---TAT-GTATTGCCCACTCCCCT----CTTTCCTC------CTTTAAAAAAAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----T-----AC--ATTTATTTTGGCCGACTCTGGC-ATTACA----------CATGATAAAGA----AGGAT-AAC--TCTA---AT--T---AA-TTTCATATTG-G-GGCTCGG-ACTG--CCCGTTGT-ATTCCGAATT-TCGT------------------GTG---AATGCGGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTACA---A--CA--A-AA----TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGCT--TGTTTACGTACATGTA------CAC---GT-AGG-TGCA-C-TTA-CGACAA---C--CT-GGAC-CACT-CGT-AGA--ATTA---------C--GATCG-ATAT-T-GGTCGT-A---A---ATCGCAGGTCGT-AACTTTTAGTG-AAA-CGGTCGT-TCGT---GCTACG-TTT---ACGATCG--CGTtcc
gi|6 : t-ATTACA-------------T----------------GC----AAACTTCATGTATTGT----------CCCCTACAACTTTTTTTATTCAGTTTTA---G---GAAA---TGAAAGT--AA----TGA----CAA---------------CAA--AATTCAACG-C--TT-----CTGGTGACTGGT---ATTT--------------A-TACA----------CACAAT--AAAGTTAAGG-A-TACTCT--A---AT--CAA----TTTCAT--CC-GCGGATTGGA-CTGTACA----AT-AT------TTCTC---------------------TAC-AATTGCAGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC----AG-CA--A-AA----TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TACT--CGTTTAT------TTA------TAC---GT-AGG-AGTA-T-TTA-CGACAA---A--CCTGGAC-CACT-GAC-AGA--GTTA---------C--GATCG-ATGT-T-GATAGT-A---A---ATTGCAAGTCAT-AACTTTTAGTG-AAA-CGGATGT-ACGT---GTTACG-TTA---GCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAAagtg
gi|7 : tttgacagtttgtcatcttttttcAAAAG---TTAA---TGAAA-G--AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----T-----AC--ATTTA-TTTTG--------GCC-A-AGTGGTATTTCATATATGAT--AGA----AGG-T-CACTCTTCG---AA--TAA-AA-TTTTATATTC-G-GGCTCGGA-CTG--CA----GA-AT------AT-TCGT------------------GTAC-AAATGCAGACAGCAAA--ATCA----TTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC----AA-CA--G-AA----TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGCT--GGTTTAC------ATG------CAC---GT-AGG-AGTG-C-TTA-CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GATCA-ATAT-T-TGTCGT-A---A---ATAGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAtacaccatctgtctgattagta
gi|8 : taAAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGTAT---AGGAAATATTATCCTGAATCAAACACA--GTTTAAATTA-TGGTTTATA--AA--TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTCAAA-CAAA-TCATGAAAC--CACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|9 : TGGTGTATA-TTCTAAACAGCATCCAAGATTTACCATTCCA--CGGGACGGCTC-----ATCCACTTTT
gi|9 : GAGAGTAGAGAGAGAG-AGATGAAAATTAGG-ATTTTATATATAA--C---TCAGTTGGTAAA------------AGGTGAATT-AATCGT-Aatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
blockSeqs : A A C CGCCTT G . T . T A C CA T TATTCGACC . A . TT TTC A ATTTAAG A C A A T AAT A TA CA GAACA CGGA A G GTGAT TCCT ATTATCCTGAAT A GT T A T AAGTA . CAATAT . C A . TG . T C T C G T AA T TT G AT TAT TA CC . CT C G C A C GACG C GATCA A . N N A C T T AT TGA AT TG . A A T ATT A T TAA . . TTCG CCCA C AA CC T GA A C ATAC T TCTTTATCATTGCGGAGGTC ATG T TATTGCCCACTC ACAA T ATTCAG AA AAACA ACT TGTT T GTTATTT A A . ACAGCT TG A CCGACTCT . T GTATTTCATA C AAA GTTA TC . GA AAT A AG AA TA CCGTTGTATTCCGAA C CAACATCACATCAGTACA . G A TG ATACA TC A G . . G TT TATCA . C GAAG T AA A G ATTAAGTC CT GTACAT ATGTGT ATTG G AA C G . AGTAC T T . . GT AAAGCATAT TT . A G . . CTT AAT . A . AAAGTGG . CAAA AT . C . C
blockSeqs : A . . CGCCTT . . T . . T . . T ATT . A . TT TTC A ATTTAAG A C A A T AAT A TA . CC T . G A TCCT . A GT T A T AATA . A . . A . T . T C T . G T AA T TT G AT T TA CC . T C C . A . CG C GATCA A . N N . C T . A TGA AT G . A . . ATT T T GTC . . TGC CCTC C . CC T A A . A . TGCC . . TC . T . AA TA . AG . GTTATTT A A . CTGGTG . A . . . . T A AT TC . . AAT A AG AA . ATTAAT . . . G A . AA T A . . . . . AAG . C . . . . . . . . . A . A . . . CAA G T . . . . . . A G . . . . . . . AAAGTGG . CAAA AT . . . .
blockSeqs : C . . . . . . . . A . . T ATT . C . TC . C . . . T A T C . AA . CC T . A A T . A . T . . AAA . . . . C . . . . T T . T A TA T TG . AT T CT C . T . . . A . C C . T . A A . A C . . CGA GA . . . . . GT A T T . . TGC CCCA A . AC T . T . A . TGCC . . C . C . AA TA . AG . GATATTT A A . T . T . . . . C A . AT . . AA A GC A . AATAT . . . G A . AA T . . . . . . CA . . . . . . . . . . . A . G . . . CAA G . . . . . . . C . . . . . . . . AAAGTG . C . . . . .
blockSeqs : . . A . . CT . . . A T . . . C . . A . . . . . . . . . . C . C A G C . . T T A . . . . . . . C . . A T . . A G . . C CA . . . . . AT A . T . . . TCC . . AA . . A . C . TGC . . C . T . AA GA . GA . GTA C C . T . A . . . . T A . T . . AA T G A . AATAT . . . G A . A A . . . . . . AA . . . . . . . . . . . G . A . . . GC G . . . . . . . G . . . . . . . . TAAGT . T . . . . .
blockSeqs : . . . T . . A . . . . . . AT . . . . . . A . TGC . . T . . . A TT . GT . GTA A C . T . . . . . . . . . A . . A T G A . AATAT . . . . A . A T . . . . . . AA . . . . . . . . . . . G . A . . . GC A . . . . . . . A . . . . . . . . AGGT . C . . . . .
blockSeqs : A T . G . . A . . T . . . . . . . . . T . . . . . A . AGAAT . . . . . . A T . . . . . . AG . . . . . . . . . . . G . A . . . GC A . . . . . . . A . . . . . . . . ATGT . C . . . . .
blockSeqs : . . . . . . AA . . . . . . . . . . . G . T . . . GC G . . . . . . . G . . . . . . . . AAGT . T . . . . .
blockSeqs : . A . . . . . . . . . . . G . A . . . GC A . . . . . . . T . . . . . . . . TCGT . A . . . . .
blockSeqs : . A . . . . . . . . . . . G . A . . . AC A . . . . . . . A . . . . . . . . ACGT . C . . .
blockSeqs : . . . . G . . . . . AA T . . . . . . . T . . . . . . . . AAGT . . .
blockSeqs : . . . . . . . . GC G . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . A . . . . .
blockSeqCons : CC*** C*** A******* T*** T* ** AT T** TA C*** ***** A* CGA*** ************ AT* T** T***** CCCA NC G* TGCC******************************** C*********** AA TA*** GTTATTT*** ** TC* *** G** AATAT*********** T* AA***** ** ****** ********* **
originalCons : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGTATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CA--CGGGCCGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCAC-ACAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTC---TAT-GT----------CGCCT----TTTTTTTT------TTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGG-T-CACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC----A--CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
finalCons : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGACA--TATATGCGTGAATNCTACTCA-GTCGAGTAAATCATATTC---AAGAATTNAAAAAATATTTAAG-ATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAA--TATAAAAAA--AAAGACC---GATC---AACAAAAAA-TATTGCACTCA-------AGTAT---AGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCAT-AAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTTT--AATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTA-CATT-CAC---GGCCGGCTC-----ATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AACGA---TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGAT-CAGGCTCGGGTACCTGAAT--TAACT-----CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CNCCCCCCATCACG-CAATTTG-ATA---AT-ATTGCATGCC--------------------------------AAAATTC---TAT-GC-----------GCCT----TTTTTTTT------TTTTAAAAGTA---AA---TGAAAAG--AA-AATTGAAATACAAGAGTTATTT---AAGCAATTAATTCAACGAC--TT-----T-----AC--ATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA----AGGTC-CACTTTTTA---AT--TAA-AA-TTTCGTAATCG--GGCTCGGAACTG--CAATAT-----------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATACAA-----CA--A-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT
Alignments
lowQualScore : 1 1 222222 1 11 1 11 222222222 11 1 111111 1111111 111 1111 11 11111 3333 22222222 222 333333333333 11 1 1 3333333 222222 22 11 1 2 111 1 1 11 11 44444 555555555555 11 111111 11 444444444444 2 1 111 222222 1111 11 22 1111 888888888888888888888888888888 111 44444444444 11111 111 1111 11111 1 22222222 2222222222 1 111 11 111 1111 111 11 2222222222222222 444444444444444444 22222 1 11111 11111111 111111 1111111 111111111 33333333 1111 11
lowQualScore : 1 0 0 888888 0 33 5 8 8 1 8 33 3 666666666 33 1 0 77 888888 1 6666666 9 2 3 3 3 999 66 4444 11 55555 0000 0 8 0 3 55555555 8 888 3 444444444444 7 88 5 3 4444444 6 555555 6 6 0 0 0 8 66 11 0 0 3 3 8 1 0 3 11 3 44 0 11 111 0 99 55 0 8 88 0 6 0 88 8 11 8 8 00000 6 111111111111 1 6 8 1 3 8 88 444444 22 99 111111111111 0 6 99 3 3 222 777777 6 6 4444 7777 3 0 11 66 5 44 1 8 5555 8 888888888888888888888888888888 444 0 66666666666 3 3 99999 111 6 99 6 99 7 2222 3 99 66666 1 44444444 6 6 1 9999999999 2 666 99 66 000 77 8888 0 1 444 77 77 2222222222222222 5 222222222222222222 5 4 5 77 00000 77 0 5 5 5 5 55 0 88888 4 8 8888 4 55 4 4 33333333 55 888888 111111 5555 3 66 3 3 2 1111111 7 5 2 2 33 333333333 33 2 1 5 2 2 444 444 3 3 3 55555555 3 4444 00 4 4 66 4
lowQualScore : . . . ...... . .. . . . . . .. . ......... .. . . .. ...... . ....... . . . . . ... .. .... .. ..... .... . . . . ........ . ... . ............ . .. . . ....... . ...... . . . . . . .. .. . . . . . . . . .. . .. . .. ... . .. .. . . .. . . . .. . .. . . ..... . ............ . . . . . . .. ...... .. .. ............ . . .. . . ... ...... . . .... .... . . .. .. . .. . . .... . .............................. ... . ........... . . ..... ... . .. . .. . .... . .. ..... . ........ . . . .......... . ... .. .. ... .. .... . . ... .. .. ................ . .................. . . . .. ..... .. . . . . . .. . ..... . . .... . .. . . ........ .. ...... ...... .... . .. . . . ....... . . . . .. ......... .. . . . . . ... ... . . . ........ . .... .. . . .. .
lowQualScore : 0 0 0 555555 0 88 5 0 0 4 0 88 2 222222222 88 0 0 55 000000 0 5555555 2 5 2 2 2 222 55 5555 00 44444 4444 6 0 8 2 00000000 0 000 8 222222222222 3 33 5 3 0000000 7 888888 7 7 8 8 8 0 66 00 6 8 2 8 0 0 8 8 88 8 44 0 66 888 8 88 00 8 0 88 0 0 6 66 0 00 0 0 00000 0 222222222222 0 8 0 0 6 0 66 444444 44 00 000000000000 4 7 99 3 5 333 555555 7 7 8888 7777 8 6 00 00 6 44 0 0 0000 0 000000000000000000000000000000 000 8 00000000000 8 2 33333 777 0 22 7 22 3 0000 2 22 77777 7 22222222 7 7 0 2222222222 0 555 22 00 000 99 7777 4 9 333 00 99 1111111111111111 7 111111111111111111 7 3 0 99 00000 44 0 0 0 0 0 55 6 22222 0 0 5555 0 55 0 0 22222222 00 888888 999999 5555 1 66 1 1 9 8888888 1 7 7 7 77 333333333 77 7 0 3 7 7 777 777 3 3 6 88888888 3 8888 00 0 0 11 4
consensus : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATNCTACTC-AGTCGAGTAAATCATATT---CAAGAATTNAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAATA--TAAAAAA--AAAGA---CCGATT---AACAAAAAA-TATTGCACTC---A----AGT-ATCCTAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCATGAAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTAC-ATTC-A--C-GGC-CGGCTCGATCAATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGA-TCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CACCCCCCATCACG-CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTCTATGT----------CGCCTTTTTTTTTTTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA--AGGTCCACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----NT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC--A--A-CAA-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
Reference ( family-551 ) : TAAAGAAAAAGANCA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAACGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATNCTACTC-AGTCGAGTAAATCATATT---CAAGAATTNAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAATA--TAAAAAA--AAAGA---CCGATC---AACAAAAAA-TATTGCACTC---A----AGT-A---TAGGAAAT------------CAAACACA--GTTTAAATCAATGGTT-ATA--A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TCAT-AAAC--CACGAATCTATTCAACTTCCTCTCCGAA-TGACNTCAANTTNACTATACTTTCCGATACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAACAG-ATCCAAGATTTAC-ATTC-A--C-GGC-CGGCTC-----ATCCACTTTTTTAT------------GGAGAGAAAGAAGAGAGNAGAGAGAGAGAAGATG-ANATTTCG-ATTTTATATA-AA--CGA-TNTGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGA-TCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCNCACAC--CNCCCCCCATCACG-CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTCTATG-----------CGCCTTTTTTTTTTTTTAAAAG---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG--------GCC-A-TGCG----------TACGGT--AGA--AGGTCCACTTTTTA---AT--TAA-AA-TTTCGTAATC-G-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCGGACAGCAAA--GTCA---ATTGT-TTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC--A--A-CAA-AA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGG-AGCG-C-CTA-CGACAG---C--CCGGGAC-CACT-CGT-AGA--GTTA---------C--GATCG-ATNT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGTAAAGT-G-GCTACG-TTC---ATGTTTA--CGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|1 : AAAGACAA-TTCAC-AGAATA------AGTGA-AAAAAGCTAAT-AGAATAATTTCATTGATTTA-CATGAAACAAAATCGATATGA-ACTATTT--TAAATTCTAT--GAATGTCA---T-----TTGACAAATATATGCGTTAATCCTACTCAAG--GAGTAAATCATATTTCATAAGAATTTAAAAAATA--TAAGGAT-AAAATAAAACGAATTGATAATG-AATT-AAATCAA--A---AAAAT-ACAAACCAA-AGTTAAAAAA--AAAGA----TGAT----AACAAAAAA-T-TTGCACTCGTGA----AGTAA---TAGG--AT------------CAAACACA--G-TTAAATCAATGGTT-AT---A---TGCATCCAGTCGTTTGCTTATAT------TGTTTTGTCGTAAAATTC--CATATCTGTATGAATTTCAAAACAAATTCATGAAACAACACGAATCTATTCAATTATCTC-CCGAC-TGACTTC----TTAC--TACTTCCC-ATACA-TTTTATTT----ATAATT-TCTTTTTAAAAA-CATTTTTATTGGTGTATACTT-TAAACAG-ATCCAAGATTTAC---TC-A--CAGAC-AGGCTC-----ATCC-CTTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNNNTATA-AATTTGATTTTAT--ATAAAGATAGTGGTAAAAGGTGAATT-AATCGT-AA--GTTA-TCAGGCTCGGGAACCTGAATTTTAAC--TTCCCGTAAGGCGCAACACATGC-CA---ATGCCCCCCCACACAC--CA--------CACA-CACTTTG-ATT---AT-ATTGCATCGTTTATCCAATT----------------GCATGCAAAATTCTATGT----------TGGCTTTTTTTTTTTTT--AAGT--TCAA---TG--AAG--AA-AATTAAAATACAAGAAGATTATTTAAAGCAATTAATTC-ATGACTTTT-----TACATTTTATTTGG--------GTCAA-TGCA----------TACGGT--AGA--AGGT-AACTTTTTACACAT--TAAGAG-TTTCGTAATC-G-GGCTCGG-ACTG--C-----TT-A-------TT-TCGT------------------GTGCAAAATGCAGACAGC--A--GTC----ATTG--TTTCTACT-T-CATCGTGT-CAGACAGACTCCAGTCAGG-T-AAT---ATACGTA--A-C-A-AA----TGAT-CTCAGGCAGG--G-CGACAT-AGC-AGCCATCG--------GTCT--TGTTTAC------GTGC-----CAC---GT-AGG-AGTG---CTACCGTCAG---C--CTGGAAT-CACTGCGTCAGA--GTTAG--------C--GATCGCATTT-TGGGTCGTAA---A---ATCGCCAGTCGTAAACTGTTA-TG-AAAGCGGTCGTA---T-GTGC-ACGCTTC---ATGTTTA--CGCCTGACG-TTTACGATCCTTACGAT-CGCTTAGTG-AACGG
gi|10 : agtAAAT--TATACT-ATCA-CAA-AA----TGAT-CCCAGGCCGG--GCC------AAC-AGCTAACT--------TAC-------------------------CAC---A---------G-C-CTA-----------------GAC-CACT-TGT-AGA--GTTA---------C--GATTG-ATAT-T-ATTCGT-A---A---ATCGCATGTTGC-AACTATTAGTG-AAA-CGGCCGT-AGGT---GCTACG-TT-------TT-----------CG-TTTATGATC--TACGAT-CGATTAGTGAAACG
gi|11 : CATTT--------TGCT--CCTTTAC------CTG------CAT---AT-AGG-AGCA-C-CTG-TGACAG---C--CTTGGAC-CATT-CAT-AGAGTGTTAAAAGCATATT--GATCA-ATAC-T-GGTTGT-A---A---ATCACAAGTCCT-CACTTTTAGTG-AAA-TGGTTGTA---T-GTGTTGCA-TTC---ATGTTTA--TGTCT-ATGCTTTACAAaccctct
gi|12 : AAT--ACTAC--C--A-CAA-AA----TGTTTCTCAGGCAGGAAGCAGTTTT-GGC-AGCAATTTATTAAGTCTGCTCTTGTTACC------GTGATGTGTCATATTGT-CGA-GGCA-C-TTA-CGATAAGTAC--CTGGAAC-ATCT-CGT-AGG--GTTA---------CTTAA--G-AACT-T-GGTCGT-A---G---ATC
gi|13 : CT-CGT-AGA---TTA---------C--GATCG-TGGT-T-GGTCGT-A---A---ATCGCAAGTCGT-A-CTTTTAGTG-AAA-CGG-CGTAAAGT-G--CTACG-TT----ATGTTTA--CGTCT-ACG-TTTACGATC--TACGATCCGCTTAGTGAAACGGTC
gi|14 : caggtaagatgtaaaatgtgtCCACT-TC--TCGTGGGCA-ACGAGCG-CAGTCAGGGTAAATTTAATAC--A--AGCGA-GAGAAGTAAT-CTCAGCAAGG--GCCGACATAAGCGAGCCATCT--------TGC---TGGTTAC------GTG------CAC---GTGAGG-AGCG-CGCTA-CGACAG---C--Ccc
gi|16 : cacAAT------------CAAACACA--GTTTAAGTCA-TGGTT-ATAATA---TGCATACA-TCGTTTGCT--TAT------TG-TCTGTCGTAAAATTC-ACACATCTGT
gi|17 : cctgAC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCA
gi|18 : AC------GTA------CAC----T-AGG--GCG-C-CTA-CAACA----CAACCGGGATTCACT-CGC-AG----TTA---------C---ATCC-ATATGT-AGTCGT-A---A---ATCGCAcg
gi|19 : --CCAGGAC-CACT-CGT-AGA--GTTA---------C--GATAG-AAGT-T-GGTCGT-ACTTAAATATCGCAAGTCGT-AACTTTTAGTG-cg
gi|2 : agTAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATACTACTC-AGTTGAGTAAATCATATT---CAAGAATTAAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAATA--TAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGT-ATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTAC-ATTA-A--C-GGC-CGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTCTGTG-----------CGCCTTTTTTTTTTTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA--AGGTCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC-----A-CAACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|20 : AATCGT-AAATGTGG-TCAGTCTCGGATATCTATA--TTAAC--TAA-C-T-AGGCAC-ACACATTCGCACCTCCCC
gi|21 : -CGTCAG---C--CTGG-AT-CACT-CGT-AGA--GTTA---------C--GGTCA-ATAT-T-TCTCGT-A---A---ATCGCAAGTCGC-AACTTT
gi|22 : -GTTACG-TTT---CTGTTTC--TGTCT-ACG-TTTACGATC--TACACT-CGCTCAGTGAAACTGTC
gi|23 : TT-CATTGATTTT-CATGAAACAAAATCGATACGA-Accg
gi|24 : TAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---AT
gi|3 : TAAAGAAAAAGAACA-TTCAC-AGAATACGCCTTAGTGT-AAAAG--TAATTAAAATAATT-CATTGATTTT-CATGAAACAAAAATGATATGA-AATATTC--AAATTTCTATTGAAATGTCA-ATT-----TTGAC--ATATATGCGTGAATACTACTC-AGTTGAGTAAATCATATT---CAAGAATTAAAAAAATATTTAA-GATAAAAATAAAACGAATTGATAATGAAATTAAAATCAATGAAATAAAATAACAAACCAATA--TAAAAAA--AAAGA---CCGATT---AACAACAAA-TATTGCACTC---A----AGT-ATCCTAGGAAAT------------CAAAC-CAGTGTTTAAATCAATGGTT-AT---A---TGCATCCA-TCGTTTGCTTATAT------TG-TTTGTCGTAAAATTC-ACATATCTGTATGAATTTCAAAACAAA-TGA--AAAC--CACGAATC-ATTCAACTTCCTCTCTGAA-TGACGTCAATTTAACTATACTTTCCGGTACATTTTTATTT--TAATAATTATCTTTTTAAAAACCATTTTTATTGGTGTATA-TT-TAAA-AG-ATCCAAGATGTAC-ATTA-A--C-GGC-CGGCTCGATCAATCCACTTTTTTAT------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACATTTTG-ATTTTATAT--AA--TGA-TATGT--GTAAA------------AGGTGAATTAAATCGT-AAG-GTGATTCAGGCTCGGGTACCTGAA--TTAAC--T---CGT-AGGCGC-ACACATGC-CACCCACCCCCCCCCCCACCC--CCCCCCCCATCAC--CAATTTG-ATA---AT-ATTGCA-------------T----------------GC---CAAAATTCTGTG-----------CGCCTTTTTTTTTTTTTAAAAA---TAAA---TGAAAAG--AA-AATTGAAATACAAGA--GTTATTT-AAGCAATTAATTCAACGAC--TT-----TACATTTAATTTGG--------GCC-A-TGCG----------TA-GGT---GA--AGGTCCACTTTTTA---AT--TAA-AATTTTCGTAATCAG-GGCTCGGAACTG--CA----AT-AT------TT-TCGT------------------GTGC-AAATGCG--CAGCAAA--GTCA---ATTGT-TTTCTACTATCCATCGTGT-CA-ACAGACT-CAATCAGG-TAAAT--AATAC-----A-CAACAA----TGAT-CTCAGGCAGG--GCCGACAT-AGC-AGCCATCT--------TGTT--TGTTTAT------GTG------CAC---GT-AGG-AGCA-C-CTA-CGACAG---C--CCAGGAC-CACT-CGT-AGA--GTT-------------GATCG-ATTT-T-GGTCGT-A---A---ATCGCAAGTCGT-AACTTTT-GTG-AAA-ACGTCATAAAGTGG-GCTACG-TTCAAAATGTTTAATCGTCT-ACG-TTTACGATC--TACGAT-CGCTTAGTGAAACGGTC
gi|4 : AAGTAAAAGACCAATTCACCAGAATA-------GTGTGAAAAG--TAAT-AAAATAATT-CATTGATTTTTCATGAAACTAAAACGATATGACAATATTTCAAAATTCCCATTGAAATGTCATATTCGACCTCGAG--ATATATGCGTGAATCCTATCA-AGTCGAGTAAATCATA-----------TTCACAGAAT---------------TAAAA--------TAATGAATTTAAAATCAATGA--CAAAATA-CAAACCCAAA--TAAAAAACAAAAGAGAACAGATCGGAAACAAAAAAATATT-CACTC---GTGATAGT-A---TAGAGAAT------------CAAACACA--GTTCAAATCA-TGGTTTATA--AGTATGTATCCA-TCGTT-GCTTATATCAATATTG-TTTGTCGAAAAATTCCACATATCTG-A-GAATT-CAAACAAAA-TCAT-AAAC--CACGAATTTATTCA-CTTC-TCTCCGCACTGACTTCAAATTG--TATACT--CC-ATAC-TTTTTATTT--TA-TAAT-ATCTTTTTAAAAAC-ATTTTTAT-GGTGTATA-TT--AAACAGGATCCAAAATTTAC--TCC-AGAC-GGA-CGGCTC-----ATTCTCTTTTTCAT------------CGAGAGAAAGAAGAGAGAAGAGAGAGAGAAGATA-GAGTTTCATATCTTATATA-AA--CGA-TGAGTG-GTAAA------------AGTGGAATT-AATCGTAAAG-GTTA-T-AGGCTC-GGTACCTGAA----AACGTC---CGT-A-GCGC-ACACA----CATCC-CCCCCCCCCACACACAACACAGCACA-CACA-CATTTTG-ATATACAT-ATTGCA-------------TCTTTATCATTGCGGAGGT---CAAAATTC-ATG-----------TGCCTTTTTT--------AAAG---T-AA---TGAAAGA--AA-AATTGAAATACAAGA--GATATTT-AAGCAATTAATTCAATGAC--TTACAGCTACATTTA--TTGG--------GCC-A-TG-G----------TAC-GT--AGAATAAGT-CACTTTTTA---CCGATAA-A--------AATC---GGCTCGG-ACTG--CA----TTAAT------TA-TCGCCAACATCACATCAGTACAGTGC-CAATGCAGACAGCAAATGATGATACATTATCTTTCTACT-TCCATCGTGT-CA-ACAGACT-CAGTCAGG-TAAAT--AATAC--A--A-CAA-AA----AGAT-CTCAGGCAGG--ACCGACAT-AGC-AGCCATCT--------TGCT--TGTTTAC------GTG------CAC---GT-AGGAAGCACC-CTA-CGACAG------GCAAGAT-CACT-CGT-AGA--G-TA---------C--GATCG--TTT-T-TGTCGT-A---A---ATCGCAAGTCGT-AAC-TTTAGTGAAAA-CAGTCGTTAAGT---GCTACG-TTC---AT-------TGTTT-ACG-TTTACGAT---TACGAT-CGCTTAGTGAAACG
gi|5 : -GTGA-TCAGTCTTGGATACCTA---------------CGC-AGGCAC-AAATA---------ACCCC-------ACAT--CAACCCCCATTTTGACAACTTGCATC---ATTATTACA-------------T----------------GC----AAAGTTCTATGTATTGCCCACTCCCCTCTTTCCTCCTTTAAAAAAAACAAAACTTTAAATGTTAATAATGAAAATATAAGA--GT-A----AAACAATTCATTTCACGCC--TT-----TACATTTATTTTGGCCGACTCTGGC-ATTACA----------CATGATAAAGA--AGGATAAC--TCTA---AT--T---AA-TTTCATATTG-G-GGCTCGG-ACTG--CCCGTTGT-ATTCCGAATT-TCGT------------------GTG---AATGCGGACAGC-AA--GTC----ATTGA-TTTCTACC-TCCATCGTGT-CA-ACAATAT-CAGTCGGG-TAAAT--ACTAC--A--A-CAA-AA----TGAT-CTTAAGCAGG--GCAAACGT-GAC-AGCCATAT--------TGCT--TGTTTACGTACATGTA------CAC---GT-AGG-TGCA-C-TTA-CGACAA---C--CT-GGAC-CACT-CGT-AGA--ATTA---------C--GATCG-ATAT-T-GGTCGT-A---A---ATCGCAGGTCGT-AACTTTTAGTG-AAA-CGGTCGT-TCGT---GCTACG-TTT---ACGATCG--CGTtcc
gi|6 : tTCTA---AT--CAA----TTTCAT--CC-GCGGATTGGA-CTGTACA----AT-AT------TTCTC---------------------TAC-AATTGCAGACAACAA---GTTA----TTGT-GTTCTACT-TCTAGCGTGT-CA-ACAAACT-CGCTCATT-TAAAT--ACTAC--A--G-CAA-AA----TGTT-CTCAGGCAGG--GTAGACAC-AAC-ACCCATAT--------TACT--CGTTTAT------TTA------TAC---GT-AGG-AGTA-T-TTA-CGACAA---A--CCTGGAC-CACT-GAC-AGA--GTTA---------C--GATCG-ATGT-T-GATAGT-A---A---ATTGCAAGTCAT-AACTTTTAGTG-AAA-CGGATGT-ACGT---GTTACG-TTA---GCGTTTA--CGTCT-ACG-TTTACGATA--TACGAA-C----AGTGAAagtg
gi|7 : tttgacagtttgtcatcttttttcattacatgcaaacttcatgtattgtcccctacaactttttttattcagttttaggaaatgaaagtaatgacaacaaaattcaacgcttctggtgactggtatttatacacacaataaagttaaggatacAAAAG---TTAA---TGAAA-G--AA-AATTAAAATACAAGA--GT-A----AAGCGATTAATTCAATGCA--TT-----TACATTTA-TTTTG--------GCC-A-AGTGGTATTTCATATATGAT--AGA--AGGTC-ACTCTTCG---AA--TAA-AA-TTTTATATTC-G-GGCTCGGA-CTG--CA----GA-AT------AT-TCGT------------------GTAC-AAATGCAGACAGCAAA--ATCA----TTGT-TTTCTTCT-CCCATCGTGT-CC-ACAGACT-CAGTTAGG-TAAAT--ACTAC--A--A-CAG-AA----TGAT-CTCAGACGAT--GTAGACAT-GAC-ATCCATCT--------TGCT--GGTTTAC------ATG------CAC---GT-AGG-AGTG-C-TTA-CGTCAG---C--CT-GGAT-CACT-CGT-AGA--GTTA---------C--GATCA-ATAT-T-TGTCGT-A---A---ATAGCAAGTCGT-AACTTTTAGTG-AAA-CGGTCGT-AAGT---GCTACG-TTC---ATGTTTA--CG---------------TC--TACGAT-CGCTTAGTGAAAtacaccatctgtctgattagta
gi|8 : taAAA--AAAGA---CTGAT----AACAAAAAA-TATCACACTC---A----AGT-A---TAGGAAATATTATCCTGAATCAAACACA--GTTTAAATTA-TGGTTTATA--AA--TGCATCCA-TCGATTGCTTATAAA-----TG-TTAGTCGTAAAATTC-ACATATCTGTATGAATTTC-AAACAAA-TCATGAAAC--CACGACTCTATTCAACGTGTCCCCTGAA-TGACCTGAAATTTACCACA-TTGCC-ATACATTTTTATTCTATAATGATCTTCTTTTTAA
gi|9 : TGGTGTATA-TTCTAAACAGCATCCAAGATTTACCATTCCA--C-GGGACGGCTC-----ATCCACTTTT
gi|9 : GAGAGTAGAGAGAGAG-AGATGAAAATTAGG-ATTTTATATATAA--C---TCAGTTGGTAAA------------AGGTGAATT-AATCGT-Aatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtggaaatgttatagaccgagagtagagagagagagatgaaaattaggattttatatataactcagttggtaaaaggtgaattaatcgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATGTGAACTGTCTCGATTACGAAGGCATATACCCCCCCCCCCCTTTAAAAAAAAGACAACTTGCATCACTATTACTACACGCCATAATCTATGTATTCCGCCACCTCTCT