lowQualScore : 1 11 11 11 22222222222222 222222 111 4444444444444444444444444 111 2222222222222222 1111 1 8888888888888888888888888 1 33333333333333333333333333333 111111 5555555555555555555555555 111 222222222222 1 2 333 111 1111 55
lowQualScore : 8 9 44 99 11 8 88888888888888 999999 666 666 666 77 1111111111111111111111111 0 000 8 8 8 5555555555555555 2222 5 7 9999999999999999999999999 6 0 8 0 8 8 8 6 77777777777777777777777777777 5 333333 7777777777777777777777777 000 6 6 6 6 888888888888 0 1 8 8 6 777 6 888 6 3333 6 77 6 6 3 4 55
lowQualScore : . . .. .. .. . .............. ...... ... ... ... .. ......................... . ... . . . ................ .... . . ......................... . . . . . . . . ............................. . ...... ......................... ... . . . . ............ . . . . . ... . ... . .... . .. . . . . ..
lowQualScore : 0 6 00 22 00 0 66666666666666 666666 888 888 777 99 4444444444444444444444444 8 000 0 0 0 8888888888888888 2222 0 3 7777777777777777777777777 5 0 0 8 0 0 0 0 11111111111111111111111111111 7 444444 2222222222222222222222222 222 7 7 7 7 999999999999 0 4 0 0 0 000 7 333 7 5555 7 77 7 7 2 0 00
consensus : CATGAC-TGTTGAGA-TAAA-GAG--T-TATT-----AAT-AT-AACGTAAATG-TN--GAGTGACC-T-CA-A-CCTT-TAC--AAA-----AT-GA-CCT----C-GTGT-GACC-T-T-T-G-CC-----A-G--TT-AGTTCAT-T-TGCCTATTCCA---TTTTGTGC--C------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAAC-AG----TTTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-G--TATA-T---CT----------TCTC--AA-TGA-CCT-T-GGCTT-T---AAGAA--AT-ATCAGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TT-GAA-ATGA-AGTTTATTTTANTTTGGCATA
Reference ( gi|2 ) : CATGAC-TGTCGAGG-TAAA-GAG--T-TACT-----AAT-GT-AACGTAAATA-TG--GAGTGACC-T-CA-A-CCAT-TAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CC-----A-G--TT-A-TTCAT-T-TGCCTATTCC----TTGTATG----------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAAC-AG----TTTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CA-AG-G--TATT-T---TT----------TCTC--AA-TGA-CCT-T-GGCTT-T---GAGAG--AT-ATCGGAACGAAA-G-TCCATAAT-AACTG---TTGA-AATAT--T-G-TT-AAA-ATGA-AGTTTATTTTATTTT--CATA
gi|1 : CATGACGTGT-GAGA-TAGA-AAGGAT-TATTGTCATAAT-A--AACATAAAT--TGTTGAGTGACCAC-CATA-TCTT-TACCTATA-----AT-GAACCTATGGT-GTGT-G-CT-TAT-T-GACC-----A-G--TT-AGTTCAC-T-TGC-TATTCC----TATTGTG----------TG--GACATATAA-TC-TATTACC-TGATTCTCAAAC-AGCACATTTAA-------AT---A----AGGAACTTTTTCCTCA-T-A-CACAG-G--TATA-TAGGTG----------CGTC--AA-TGA-CCTCT-CGCTT-TCACAAGAG--AT-ATCCGAACGAAACG-TTC--AAT-AACTGTTTTTGATAATATAATAG-TTGAAA-ATGA-GTTTTACATTAATT
gi|8 : aagatatcagtaacaaacttgttattgaaaatatatttcccgaactatgcatctataatcaatgaaatacttattttcaagcaatgtacatatagactttaccaatgaacCATGAC-TGTTGAGAATAAAAGGG--T-TATT-----ATTCGTTAACGTAGATGGTC--GAGCGACC-TGCA-AACCGTCTAC--AAA-----AT--A-CCT----TGGTGT-GACC-C-T-TGG-CC-----A-GGTCT-AGTCCAT-TGTGCCataattaatcgataatgtatttataaatatgaccttcgcacaaactcgaaccttacgtcttctattacttaaaaatcgatcatttgcatatgttactaatctaatgtgatcacttcaattctttgttacaaaactgtgtgataatgaa
gi|11 : atCATGAC-TGTTGAAA-TAAAGGAG--TATATT-----ATT-AT-ACTGTAAA-A-TGT-GAGAGACC-T-CA-A-CT-T-TAC--AAA-----AT-GA-
gi|17 : acCATCAC-TGT-GAGA-TAAA--AG--T-TA-T-----AAT-AT-AACGTAAAT
gi|12 : ataacATGAC-TGTTGACA-TAAA-GGG--T-TATT-----AAT-TT-AACGTAAATG-TT--GAGTGACC-T-CA-A-ACTT-TAG--AAA-----AT-tt
gi|15 : ctGTAAATG-TT--GAGTAACC-T-CA-G-CCTT-TAC--AAA-----A-----------------T-GACC-T-T-T-G-CC-----A-G--TT-A-GTCA
gi|4 : tgtg--GAGTG-CC-T-CA-A-CTAA-TAA--AAACGGCTAT-GA-CAC----C-AGG--GACC-T-T-T-G-CCTGTTCA-G--TT-T-TTCAA-T-TGC-TAT-CCAA--TTTTATGCAACAGTCTTTA-CGA---ATGA-TC-AAT-ACC-TG-TTT-AAAAC-------TTTAAATTT--AA------------AATTTTTTCCT-A-T-A-CC-AGTA--CATA-T---CT----------TCTG--AA-TGA-CCT-TCAGCTT-
gi|3 : AC--AAA-----ATTGA-CCT----TTGTGTTGACCAT-TAT-G-CC-----ATG--TTTA-GTCATAT-TGCCTATTCCATCCTTGTTTGCCTT------TGTCGACATATGAATCTAAT-ACC-TG-TTCAAAAAC-AG----TTTAA---TAAAAT---AATATAGTAACTTTCTCCTCA-TAA-CA-AGCGTTTATC-T---CCACTCCACACATCTC--AA-TGA-CCT-T-GGCTT-T---AAGGATTAT-ATCAAAACGAAA-G-TTC-CAATAAACTG---TTGA-AATAT--TGG-TT-GAATATGAGAGTTTATTTT
gi|13 : aTGTG----------TG-AGATATATGA-TC-A-T-ATCATG-TTCAAAAACTA------TTAA------AAT---A----AGGAACTTTTTtcaattataca
gi|9 : attgat-AAT-ACC-TG-TTCAAA-----------------------T---A----AGGAATTTTTTCCTCA-T----G-AG-G---ATGAT---CT----------TCTT--AA-TGA-CCT-T-GACTT-T---TA-AA--AT-CTT----C-AAA-G-TTC--AAT-AACTA---TTGA-AATAT--T-G-TT-GAA-ATGA-AGt
gi|5 : AAC-AC----TTTAA---T--AAT---A----AGGAACGTTTTCCTCA-T-A-CA-gt
gi|6 : ccatgcctgttgagataaatgattattgatataacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC-AG----TTTAAA--T--AATTTAA----GGGGACTTTTTCCTCATT-ATCA-AG-G--GATA-T---CT----------TCTCCGAACTGACCCT-T-GGCTTAA---GGGAA--ATAATC-GAACGAAA-GCTTCAT-CT-AACTGT--TTGA-AATAT--T-GTTT-AAA-ATGA-AG----TTTTATTTTGGCATA
gi|16 : --AAC---A----AGGACCGTTTTCCTCT-T-T-TG-AG-G--TATA-T---CT----------TCCA--AA-TGA-CCT-T-GACCT-T---t
gi|14 : gaTCAGAACGAAA-G-TTCA--AT-ATCTA---TTGA-AATAT--T-G-TT-GAA-ATGA-AGTTTATTTT
gi|18 : AAT-ACCTG---TTGA-AGTAT--T-G-TT-GAA-ATGA-AGcatacac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGTGTTTAATACATATAAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAA
Unaligned ( gi|10 ): AACAAGAATATCAGTAAAAGTGATGAATATGCTCCCCGAATTGCATCTAACCAATGAAATACTTATTTGACGAATGAGGAATGACTTATAAAATGA
Alignments
lowQualScore : 11 11111 11111 222222 1 1111 11111 5555555555555555555 333333333333333333 11111111 111111 1 222222222222 111111111111 1 1111 111 1 11
lowQualScore : 5 7 5 44 77 5 44444 888 5 5 5 6 5 5 5 77 5 66 11111 5555 777777 5 666 5 5 5 5 77 1 5555 6 6 8 66666 7777777777777777777 2 6 5 5 5 5 1 1 888888888888888888 00000000 5 333333 1 3 5 77 999999999999 5 77 5 5 5 5 0 444444444444 8 3 5 5 7777 5 555 5 77 1 5 5 5 5 0 1 77
lowQualScore : . . . .. .. . ..... ... . . . . . . . .. . .. ..... .... ...... . ... . . . . .. . .... . . . ..... ................... . . . . . . . . .................. ........ . ...... . . . .. ............ . .. . . . . . ............ . . . . .... . ... . .. . . . . . . . ..
lowQualScore : 7 1 7 44 99 7 33333 111 0 0 7 6 0 0 0 88 0 11 11111 4444 999999 7 000 7 7 7 7 99 4 0000 7 7 5 11111 3333333333333333333 8 7 7 7 7 7 7 4 555555555555555555 99999999 0 999999 4 6 7 99 333333333333 7 99 7 7 7 7 1 999999999999 0 8 7 7 3333 7 777 7 99 4 7 7 7 7 8 0 55
consensus : CATGAC-TGTTGAGA-TAAA-GGG--T-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC---------T--G-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
Reference ( family-5283 ) : CATGAC-TGTTGAGA-TAAA-GAG--T-TATT-----AATA--TAACGT-AAAT-G-TNGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----C-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC--------CT--G-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCAGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTANTTTGGCATA
gi|1 : CATGACGTGT-GAGA-TAGA-AAGGAT-TATTGTCATAATA---AACAT-AAATTG-TTGAGTGACCAC-CATA-TC-TTTACCTATA-----AT-GAACCTATGGT-GTGT-G-CT-TAT-T-GACCA-G--TT-AGTT---CAC-T-TGC-TATTCCTATT-GTGT--G----------------GACATATAA-TC-TATTACC-TGATTCTCAAACAGCACAT-TTAA-------AT---A----AGGAACTTTTTCCTCA-T-A-CACAG-GTAT-ATAGGT------------GCGTC--AA-TGA-CCTCT-CGCTTTCACAA--GAG--AT-ATCCGAACGAAACG-TTC--AAT-AACTGTTTTTGATAATATAATAG-TTGAAA-ATGA-GTTTTACATTAATT
gi|11 : aagatatcagtaacaaacttgttattgaaaatatatttcccgaactatgcatctataatcaatgaaatacttattttcaagcaatgtacatatagactttaccaatgaacCATGAC-TGTTGAAA-TAAAGGAG--TATATT-----ATTA--TACTGTAAAAT-G-T-GAGAGACC-T-CA-A--C-TTTAC--AAA-----AT-GA-ataattaatcgataatgtatttataaatatgaccttcgcacaaactcgaaccttacgtcttctattacttaaaaatcgatcatttgcatatgttactaatctaatgtgatcacttcaattctttgttacaaaactgtgtgataatgaa
gi|12 : acATGAC-TGTTGACA-TAAA-GGG--T-TATT-----AATT--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-AC-TTTAG--AAA-----AT-
gi|13 : ct-TTGT--G----------T--G-AGATATATGA-TC-A-T-ATCATG-TTCAAAAAC------TATTAA------AAT---A----AGGAACTTTTT
gi|14 : attgaTCAGAACGAAA-G-TTCA-A-T-ATCTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTt
gi|15 : GT-AAAT-G-TTGAGTAACC-T-CA-G-CC-TTTAC--AAA-----A-----------------T-GACC-T-T-T-G-CCA-G--TT-AGTcatacac
gi|16 : tgtg--AAC---A----AGGACCGTTTTCCTCT-T-T-TG-AG-GTAT-AT--CT------------TC-CA--AA-TGA-CCT-T-GACCTT---ca
gi|17 : gaCATCAC-TGT-GAGA-TAAA--AG--T-TAT------AATA--TAACGT-AAAT-
gi|18 : ataacCAAAT-G-TTCA-A-T-ACCTG---TTGA-AGTAT--T-G-TTG-AA-ATGA-AGtt
gi|2 : atCATGAC-TGTCGAGG-TAAA-GAG--T-TACT-----AATG--TAACGT-AAAT-A-TGGAGTGACC-T-CA-A-CC-ATTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-A-TT---CAT-T-TGCCTATTCC-----TTGT--AT--------GT--G-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CA-AG-GTAT-TT--TT------------TC-TC--AA-TGA-CCT-T-GGCTTT---GA--GAG--AT-ATCGGAACGAAA-G-TCCATAAT-AACTG---TTGA-AATAT--T-G-TTA-AA-ATGA-AGTTTATTTTATTTT--CATAgt
gi|3 : AC--AAA-----ATTGA-CCT----TTGTGTTGACCAT-TAT-G-CCATG--TTTAGT----CATAT-TGCCTATTCC-ATCCTTGTTTGC--------CTTTGTCGACATATGAATCTAAT-ACC-TG-TTCAAAAACAG----T-TTAA---TAAAAT---AATATAGTAACTTTCTCCTCA-TAA-CA-AGCGTTT-AT--CTCCACTCCACACATC-TC--AA-TGA-CCT-T-GGCTTT---AA--GGATTAT-ATCAAAACGAAA-G-TTCC-AATAAACTG---TTGA-AATAT--TGG-TTG-AATATGAGAGTTTATTTT
gi|4 : aGAGTG-CC-T-CA-A-CT-AATAA--AAACGGCTAT-GA-CAC----C-AGG--GACC-T-T-T-G-CCT-G--TTCAGTTTTTCAA-T-TGC-TATCCA-ATT-TTAT--GCAACAGTCTTT--A-CGA---ATGA-TC-AAT-ACC-TG-TTT-AAAAC------T-TTAAATTT--AA------------AATTTTTTCCT-A-T-A-CC-AGTACAT-AT--CT------------TC-TG--AA-TGA-CCT-TCAGCTTtcaattataca
gi|5 : CATGCC-TGTTGAGA-TAAA-TGA--T-TATT-----GATA--TAACGN-NNNN-N-NNNNNNNNNN-N-NN-N-NN-NNNNN--NNN-----NN-NN-NNN----N-NNNN-NNNN-N-N-N-N-NNN-N--NN-NNNN---NNN-N-NNNNNNNNNN-NNN-NNNN--NN--------NN--N-NNNNNNNNNN-NN-AAC-AC-----TTTAA-------------------T--AAT---A----AGGAACGTTTTCCTCA-T-A-C
gi|6 : cCAG----T-TTAAA--T--AATTTAA----GGGGACTTTTTCCTCATT-ATCA-AG-GGAT-AT--CT------------TC-TCCGAACTGACCCT-T-GGC-TT---AAGGGAA--ATAATC-GAACGAAA-GCTTCA-TCT-AACTGT--TTGA-AATAT--T-GTTTA-AA-ATGA-AG----TTTTATTTTGGCATAa
gi|8 : CATGAC-TGTTGAGAATAAAAGGG--T-TATT-----ATTCGTTAACGT-AGAT-GGTCGAGCGACC-TGCA-AACCGTCTAC--AAA-----AT--A-CCT----TGGTGT-GACC-C-T-TGG-CCA-GGTCT-AGTC---CAT-TGTGCCt
gi|9 : at-AAT-ACC-TG-TTCAAA-----------------------T---A----AGGAATTTTTTCCTCA-T----G-AG-G-ATGAT--CT------------TC-TT--AA-TGA-CCT-T-GACTTT---TA---AA--AT-CTT----C-AAA-G-TTCA-A-T-AACTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGTTTAATACATATAAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAA
Unaligned ( gi|10 ): AACAAGAATATCAGTAAAAGTGATGAATATGCTCCCCGAATTGCATCTAACCAATGAAATACTTATTTGACGAATGAGGAATGACTTATAAAATGA
Alignments
lowQualScore : 11111 11111 222222 1 1111 1 11 6666666666666666 111111 222222 11111111 111111 1 222222222222 111111111111 1 1111 111 1 11
lowQualScore : 5 7 5 77 5 77 5 44444 888 5 5 6 5 5 5 88 5 66 22222 5555 555555 6 666 6 6 6 6 99 3 7777 8 8 0 33 88 9999999999999999 3 8 6 6 6 6 3 999999 5 666666 00000000 5 333333 1 3 5 77 999999999999 5 77 5 5 5 5 0 444444444444 8 6 5 5 7777 5 555 5 77 1 5 5 5 5 0 77
lowQualScore : . . . .. . .. . ..... ... . . . . . . .. . .. ..... .... ...... . ... . . . . .. . .... . . . .. .. ................ . . . . . . . ...... . ...... ........ . ...... . . . .. ............ . .. . . . . . ............ . . . . .... . ... . .. . . . . . . ..
lowQualScore : 7 1 7 99 7 44 7 33333 111 7 7 7 7 7 7 77 7 99 55555 9999 000000 7 888 7 7 7 7 22 3 8888 0 0 0 22 66 0000000000000000 2 0 7 7 7 7 5 444444 0 111111 99999999 0 999999 4 6 7 99 333333333333 7 99 7 7 7 7 1 999999999999 0 2 7 7 3333 7 777 7 99 4 7 7 7 7 8 55
consensus : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC---------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
Reference ( family-5283 ) : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC---------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
gi|1 : CATGACGTGT-GAGA-TAGAAA-GG-AT-TATTGTCATAATA---AACAT-AAATTG-TTGAGTGACCAC-CATA-TC-TTTACCTATA-----AT-GAACCTATGGT-GTGT-G-CT-TAT-T-GACCA-G--TT-AGTT---CAC-T-TGC-TATTCCTATT-GTGT--G--------------GACATATAA-TC-TATTACC-TGATTCTCAAACAGCACAT-TTAA-------AT---A----AGGAACTTTTTCCTCA-T-A-CACAG-GTAT-ATAGGT------------GCGTC--AA-TGA-CCTCT-CGCTTTCACAA--GAG--AT-ATCCGAACGAAACG-TTC--AAT-AACTGTTTTTGATAATATAATAG-TTGAAA-ATGA-GTTTTACATTAATT
gi|11 : aagatatcagtaacaaacttgttattgaaaatatatttcccgaactatgcatctataatcaatgaaatacttattttcaagcaatgtacatatagactttaccaatgaacCATGAC-TGTTGAAA-TA--AA-GGAGTATATT-----ATTA--TACTGTAAAAT-G--TGAGAGACC-T-CA-A--C-TTTAC--AAA-----AT-GA-ataattaatcgataatgtatttataaatatgaccttcgcacaaactcgaaccttacgtcttctattacttaaaaatcgatcatttgcatatgttactaatctaatgtgatcacttcaattctttgttacaaaactgtgtgataatgaa
gi|12 : acATGAC-TGTTGACA-TA--AA-GG-GT-TATT-----AATT--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-AC-TTTAG--AAA-----AT-
gi|13 : ct-TTGT--G----------TG-AGATATATGA-TC-A-T-ATCATG-TTCAAAAAC------TATTAA------AAT---A----AGGAACTTTTT
gi|14 : attgaTCAGAACGAAA-G-TTCA-A-T-ATCTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTt
gi|15 : GT-AAAT-G-TTGAGTAACC-T-CA-G-CC-TTTAC--AAA-----A-----------------T-GACC-T-T-T-G-CCA-G--TT-AGTcatacac
gi|16 : tgtg--AAC---A----AGGACCGTTTTCCTCT-T-T-TG-AG-GTAT-AT--CT------------TC-CA--AA-TGA-CCT-T-GACCTT---ca
gi|17 : gaCATCAC-TGT-GAGA-TA--AA-AG--T-TAT------AATA--TAACGT-AAAT-
gi|18 : ataacCAAAT-G-TTCA-A-T-ACCTG---TTGA-AGTAT--T-G-TTG-AA-ATGA-AGtt
gi|2 : atCATGAC-TGTCGAGG-TA--AA-GA-GT-TACT-----AATG--TAACGT-AAAT-A-TGGAGTGACC-T-CA-A-CC-ATTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-A-TT---CAT-T-TGCCTATTCC--TT-GTAT--G----------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CA-AG-GTAT-TT--TT------------TC-TC--AA-TGA-CCT-T-GGCTTT---GA--GAG--AT-ATCGGAACGAAA-G-TCCATAAT-AACTG---TTGA-AATAT--T-G-TTA-AA-ATGA-AGTTTATTTTATTTT--CATAgt
gi|3 : AC--AAA-----ATTGA-CCT----TTGTGTTGACCAT-TAT-G-CCATG--TTTAGT----CATAT-TGCCTATTCC-ATCCTTGTTTGCCTT------TGTCGACATATGAATCTAAT-ACC-TG-TTCAAAAACAG----T-TTAA---TAAAAT---AATATAGTAACTTTCTCCTCA-TAA-CA-AGCGTTT-AT--CTCCACTCCACACATC-TC--AA-TGA-CCT-T-GGCTTT---AA--GGATTAT-ATCAAAACGAAA-G-TTCC-AATAAACTG---TTGA-AATAT--TGG-TTG-AATATGAGAGTTTATTTT
gi|4 : aGAGTG-CC-T-CA-A-CT-AATAA--AAACGGCTAT-GA-CAC----C-AGG--GACC-T-T-T-G-CCT-G--TTCAGTTTTTCAA-T-TGC-TATCCA-ATT-TTAT--GCAACAGTCTTTA-CGA---ATGA-TC-AAT-ACC-TG-TTT-AAAAC------T-TTAAATTT--AA------------AATTTTTTCCT-A-T-A-CC-AGTACAT-AT--CT------------TC-TG--AA-TGA-CCT-TCAGCTTtcaattataca
gi|5 : CATGCC-TGTTGAGA-TA--AA-TG-AT-TATT-----GATA--TAACG
gi|5 : cAACAC----T-TTAA---T--AAT---A----AGGAACGTTTTCCTCA-T-A-Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacactttaataataaggaacgttttcctcataca
gi|6 : ccatgcctgttgagataaatgattattgatataacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAG----T-TTAAA--T--AATTTAA----GGGGACTTTTTCCTCATT-ATCA-AG-GGAT-AT--CT------------TC-TCCGAACTGACCCT-T-GGC-TT---AAGGGAA--ATAATC-GAACGAAA-GCTTCA-TCT-AACTGT--TTGA-AATAT--T-GTTTA-AA-ATGA-AG----TTTTATTTTGGCATAa
gi|8 : CATGAC-TGTTGAGAATA--AAAGG-GT-TATT-----ATTCGTTAACGT-AGAT-GGTCGAGCGACC-TGCA-AACCGTCTAC--AAA-----AT--A-CCT----TGGTGT-GACC-C-T-TGG-CCA-GGTCT-AGTC---CAT-TGTGCCt
gi|9 : at-AAT-ACC-TG-TTCAAA-----------------------T---A----AGGAATTTTTTCCTCA-T----G-AG-G-ATGAT--CT------------TC-TT--AA-TGA-CCT-T-GACTTT---TA---AA--AT-CTT----C-AAA-G-TTCA-A-T-AACTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGTTTAATACATATAAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAA
Unaligned ( gi|10 ): AACAAGAATATCAGTAAAAGTGATGAATATGCTCCCCGAATTGCATCTAACCAATGAAATACTTATTTGACGAATGAGGAATGACTTATAAAATGA
Alignments
lowQualScore : 11111 11111 222222 1 1111 1 11 6666666666666666 111111 222222 11111111 111111 1 222222222222 111111111111 1 1111 111 1 11
lowQualScore : 5 7 5 77 5 77 5 44444 888 5 5 6 5 5 5 88 5 66 22222 5555 555555 6 666 6 6 6 6 99 3 7777 8 8 0 33 88 9999999999999999 3 8 6 6 6 6 3 999999 5 666666 00000000 5 333333 1 3 5 77 999999999999 5 77 5 5 5 5 0 444444444444 8 6 5 5 7777 5 555 5 77 1 5 5 5 5 0 77
lowQualScore : . . . .. . .. . ..... ... . . . . . . .. . .. ..... .... ...... . ... . . . . .. . .... . . . .. .. ................ . . . . . . . ...... . ...... ........ . ...... . . . .. ............ . .. . . . . . ............ . . . . .... . ... . .. . . . . . . ..
lowQualScore : 7 1 7 99 7 44 7 33333 111 7 7 7 7 7 7 77 7 99 55555 9999 000000 7 888 7 7 7 7 22 3 8888 0 0 0 22 66 0000000000000000 2 0 7 7 7 7 5 444444 0 111111 99999999 0 999999 4 6 7 99 333333333333 7 99 7 7 7 7 1 999999999999 0 2 7 7 3333 7 777 7 99 4 7 7 7 7 8 55
consensus : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC---------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
Reference ( family-5283 ) : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC---------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
gi|1 : CATGACGTGT-GAGA-TAGAAA-GG-AT-TATTGTCATAATA---AACAT-AAATTG-TTGAGTGACCAC-CATA-TC-TTTACCTATA-----AT-GAACCTATGGT-GTGT-G-CT-TAT-T-GACCA-G--TT-AGTT---CAC-T-TGC-TATTCCTATT-GTGT--G--------------GACATATAA-TC-TATTACC-TGATTCTCAAACAGCACAT-TTAA-------AT---A----AGGAACTTTTTCCTCA-T-A-CACAG-GTAT-ATAGGT------------GCGTC--AA-TGA-CCTCT-CGCTTTCACAA--GAG--AT-ATCCGAACGAAACG-TTC--AAT-AACTGTTTTTGATAATATAATAG-TTGAAA-ATGA-GTTTTACATTAATT
gi|11 : aagatatcagtaacaaacttgttattgaaaatatatttcccgaactatgcatctataatcaatgaaatacttattttcaagcaatgtacatatagactttaccaatgaacCATGAC-TGTTGAAA-TA--AA-GGAGTATATT-----ATTA--TACTGTAAAAT-G--TGAGAGACC-T-CA-A--C-TTTAC--AAA-----AT-GA-ataattaatcgataatgtatttataaatatgaccttcgcacaaactcgaaccttacgtcttctattacttaaaaatcgatcatttgcatatgttactaatctaatgtgatcacttcaattctttgttacaaaactgtgtgataatgaa
gi|12 : acATGAC-TGTTGACA-TA--AA-GG-GT-TATT-----AATT--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-AC-TTTAG--AAA-----AT-
gi|13 : ct-TTGT--G----------TG-AGATATATGA-TC-A-T-ATCATG-TTCAAAAAC------TATTAA------AAT---A----AGGAACTTTTT
gi|14 : attgaTCAGAACGAAA-G-TTCA-A-T-ATCTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTt
gi|15 : GT-AAAT-G-TTGAGTAACC-T-CA-G-CC-TTTAC--AAA-----A-----------------T-GACC-T-T-T-G-CCA-G--TT-AGTcatacac
gi|16 : tgtg--AAC---A----AGGACCGTTTTCCTCT-T-T-TG-AG-GTAT-AT--CT------------TC-CA--AA-TGA-CCT-T-GACCTT---ca
gi|17 : gaCATCAC-TGT-GAGA-TA--AA-AG--T-TAT------AATA--TAACGT-AAAT-
gi|18 : ataacCAAAT-G-TTCA-A-T-ACCTG---TTGA-AGTAT--T-G-TTG-AA-ATGA-AGtt
gi|2 : atCATGAC-TGTCGAGG-TA--AA-GA-GT-TACT-----AATG--TAACGT-AAAT-A-TGGAGTGACC-T-CA-A-CC-ATTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-A-TT---CAT-T-TGCCTATTCC--TT-GTAT--G----------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CA-AG-GTAT-TT--TT------------TC-TC--AA-TGA-CCT-T-GGCTTT---GA--GAG--AT-ATCGGAACGAAA-G-TCCATAAT-AACTG---TTGA-AATAT--T-G-TTA-AA-ATGA-AGTTTATTTTATTTT--CATAgt
gi|3 : AC--AAA-----ATTGA-CCT----TTGTGTTGACCAT-TAT-G-CCATG--TTTAGT----CATAT-TGCCTATTCC-ATCCTTGTTTGCCTT------TGTCGACATATGAATCTAAT-ACC-TG-TTCAAAAACAG----T-TTAA---TAAAAT---AATATAGTAACTTTCTCCTCA-TAA-CA-AGCGTTT-AT--CTCCACTCCACACATC-TC--AA-TGA-CCT-T-GGCTTT---AA--GGATTAT-ATCAAAACGAAA-G-TTCC-AATAAACTG---TTGA-AATAT--TGG-TTG-AATATGAGAGTTTATTTT
gi|4 : aGAGTG-CC-T-CA-A-CT-AATAA--AAACGGCTAT-GA-CAC----C-AGG--GACC-T-T-T-G-CCT-G--TTCAGTTTTTCAA-T-TGC-TATCCA-ATT-TTAT--GCAACAGTCTTTA-CGA---ATGA-TC-AAT-ACC-TG-TTT-AAAAC------T-TTAAATTT--AA------------AATTTTTTCCT-A-T-A-CC-AGTACAT-AT--CT------------TC-TG--AA-TGA-CCT-TCAGCTTtcaattataca
gi|5 : CATGCC-TGTTGAGA-TA--AA-TG-AT-TATT-----GATA--TAACG
gi|5 : cAACAC----T-TTAA---T--AAT---A----AGGAACGTTTTCCTCA-T-A-Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacactttaataataaggaacgttttcctcataca
gi|6 : ccatgcctgttgagataaatgattattgatataacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAG----T-TTAAA--T--AATTTAA----GGGGACTTTTTCCTCATT-ATCA-AG-GGAT-AT--CT------------TC-TCCGAACTGACCCT-T-GGC-TT---AAGGGAA--ATAATC-GAACGAAA-GCTTCA-TCT-AACTGT--TTGA-AATAT--T-GTTTA-AA-ATGA-AG----TTTTATTTTGGCATAa
gi|8 : CATGAC-TGTTGAGAATA--AAAGG-GT-TATT-----ATTCGTTAACGT-AGAT-GGTCGAGCGACC-TGCA-AACCGTCTAC--AAA-----AT--A-CCT----TGGTGT-GACC-C-T-TGG-CCA-GGTCT-AGTC---CAT-TGTGCCt
gi|9 : at-AAT-ACC-TG-TTCAAA-----------------------T---A----AGGAATTTTTTCCTCA-T----G-AG-G-ATGAT--CT------------TC-TT--AA-TGA-CCT-T-GACTTT---TA---AA--AT-CTT----C-AAA-G-TTCA-A-T-AACTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AG
blockSeqs : . T A . A AG A . CGT A . G . G . AC G . CGGCT TGA TT T AT A G . T GT T TTTT A G C A CT GCAACAGTCTTTA T A T . A . A AG A ATTT AATAT T AACA C T G . CCACTCCACACA . CG C C . C AAGGATT A A . C ATAA A T . . G T . T G GG
blockSeqs : . T . . . G . . A . . . . . . A . . . GA TG . T . . . . . C T . . C A T TTGCCTTTGT C . . . . . A AG . TAA TTAA . ATCA T T . . . . . . . . . AAGGGAA . G . . CAA . . . . . . . . .
blockSeqs : . C . . . G . . T . . . . . . C . . . GA T . T . . . . . . C . . C . G GTG C . . . . . A AC . AT A . TTG . T . . . . . . . . . GAGAG . A . . ATC . . . . . . . . .
blockSeqs : . T . . . A . . A . . . . . . C . . . GA C . T . . . . . . . . . . T GTG . . . . . . A AG . T A . ACA . C . . . . . . . . . TAAA . . . . AA . . . . . . . . .
blockSeqs : . T . . . G . . G . . . . . . C . . . A . . C . . . . . . . . . . . . . T A . ACC . G . . . . . . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . A . G . . . . . . . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . A .
blockSeqs : .
blockSeqCons : ** ***** ** GA** T***** T** GTG************* AG**** ACG*** ** NAGAN******* *** **
originalCons : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGT--GC---------TG-CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GAA--AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
finalCons : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----ATGA--CCTT-----GTGT-GACCT--T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCC-ATT-TTGTGTG-------------CGACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-TACG---AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTTNAGAN-------AT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGTTTAATACATATAAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAA
Unaligned ( gi|10 ): AACAAGAATATCAGTAAAAGTGATGAATATGCTCCCCGAATTGCATCTAACCAATGAAATACTTATTTGACGAATGAGGAATGACTTATAAAATGA
Alignments
lowQualScore : 11111 11111 222222 1 1111 1 1111 55555555555555555555 111111 222222 11111111 111111 1 222222222222 222222222222 1 1111 111 1 11
lowQualScore : 5 7 5 77 5 77 5 44444 888 5 5 6 5 5 5 88 5 66 22222 5555 555555 6 666 6 6 6 6 99 3 7777 8 8 0 5555 00000000000000000000 3 8 6 6 6 6 3 999999 5 666666 00000000 5 333333 1 3 5 77 999999999999 5 77 5 5 5 5 0 000000000000 8 6 5 5 7777 5 555 5 77 1 5 5 5 5 0 77
lowQualScore : . . . .. . .. . ..... ... . . . . . . .. . .. ..... .... ...... . ... . . . . .. . .... . . . .... .................... . . . . . . . ...... . ...... ........ . ...... . . . .. ............ . .. . . . . . ............ . . . . .... . ... . .. . . . . . . ..
lowQualScore : 7 1 7 99 7 44 7 33333 111 7 7 7 7 7 7 77 7 99 55555 9999 000000 7 888 7 7 7 7 22 3 8888 0 0 0 8888 22222222222222222222 2 0 7 7 7 7 5 444444 0 111111 99999999 0 999999 4 6 7 99 333333333333 7 99 7 7 7 7 1 777777777777 0 2 7 7 3333 7 777 7 99 4 7 7 7 7 8 55
consensus : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCCATT-TTGTG----------TGC-------GACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---AA--GA--GAT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
Reference ( family-5283 ) : CATGAC-TGTTGAGA-TA--AA-GG-GT-TATT-----AATA--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-CC-TTTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-AGTT---CAT-T-TGCCTATTCCATT-TTGTG----------TGC-------GACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CG-AG-GTAT-AT--CT------------TC-TC--AA-TGA-CCT-T-GGCTTT---NA--GA--NAT-ATCGGAACGAAA-G-TTCA-AAT-AACTG---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTATTTTGGCATA
gi|1 : CATGACGTGT-GAGA-TAGAAA-GG-AT-TATTGTCATAATA---AACAT-AAATTG-TTGAGTGACCAC-CATA-TC-TTTACCTATA-----AT-GAACCTATGGT-GTGT-G-CT-TAT-T-GACCA-G--TT-AGTT---CAC-T-TGC-TATTCC-TA-TTGTG----------TG--------GACATATAA-TC-TATTACC-TGATTCTCAAACAGCACAT-TTAA-------AT---A----AGGAACTTTTTCCTCA-T-A-CACAG-GTAT-ATAGGT------------GCGTC--AA-TGA-CCTCT-CGCTTTCACAA--GA--GAT-ATCCGAACGAAACG-TTC--AAT-AACTGTTTTTGATAATATAATAG-TTGAAA-ATGA-GTTTTACATTAATT
gi|11 : aagatatcagtaacaaacttgttattgaaaatatatttcccgaactatgcatctataatcaatgaaatacttattttcaagcaatgtacatatagactttaccaatgaacCATGAC-TGTTGAAA-TA--AA-GGAGTATATT-----ATTA--TACTGTAAAAT-G--TGAGAGACC-T-CA-A--C-TTTAC--AAA-----AT-GA-ataattaatcgataatgtatttataaatatgaccttcgcacaaactcgaaccttacgtcttctattacttaaaaatcgatcatttgcatatgttactaatctaatgtgatcacttcaattctttgttacaaaactgtgtgataatgaa
gi|12 : acATGAC-TGTTGACA-TA--AA-GG-GT-TATT-----AATT--TAACGT-AAAT-G-TTGAGTGACC-T-CA-A-AC-TTTAG--AAA-----AT-
gi|13 : ct-TTGTG----------TGA-------GATATATGA-TC-A-T-ATCATG-TTCAAAAAC------TATTAA------AAT---A----AGGAACTTTTT
gi|14 : attgaTCAGAACGAAA-G-TTCA-A-T-ATCTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AGTTTATTTTt
gi|15 : GT-AAAT-G-TTGAGTAACC-T-CA-G-CC-TTTAC--AAA-----A-----------------T-GACC-T-T-T-G-CCA-G--TT-AGTcatacac
gi|16 : tgtg--AAC---A----AGGACCGTTTTCCTCT-T-T-TG-AG-GTAT-AT--CT------------TC-CA--AA-TGA-CCT-T-GACCTT---ca
gi|17 : gaCATCAC-TGT-GAGA-TA--AA-AG--T-TAT------AATA--TAACGT-AAAT-
gi|18 : ataacCAAAT-G-TTCA-A-T-ACCTG---TTGA-AGTAT--T-G-TTG-AA-ATGA-AGtt
gi|2 : atCATGAC-TGTCGAGG-TA--AA-GA-GT-TACT-----AATG--TAACGT-AAAT-A-TGGAGTGACC-T-CA-A-CC-ATTAC--AAA-----AT-GA-CCT----T-GTGT-GACC-T-T-T-G-CCA-G--TT-A-TT---CAT-T-TGCCTATTCC-TT-GTATG----------TGC-------GACATATGA-TC-AAT-ACC-TG-TTCAAAAACAG----T-TTAA---T--AAT---A----AGGAACTTTTTCCTCA-T-A-CA-AG-GTAT-TT--TT------------TC-TC--AA-TGA-CCT-T-GGCTTT---GA--GA--GAT-ATCGGAACGAAA-G-TCCATAAT-AACTG---TTGA-AATAT--T-G-TTA-AA-ATGA-AGTTTATTTTATTTT--CATAgt
gi|3 : AC--AAA-----ATTGA-CCT----TTGTGTTGACCAT-TAT-G-CCATG--TTTAGT----CATAT-TGCCTATTCCATCCTTGTT----------TGCCTTTGTCGACATATGAATCTAAT-ACC-TG-TTCAAAAACAG----T-TTAA---TAAAAT---AATATAGTAACTTTCTCCTCA-TAA-CA-AGCGTTT-AT--CTCCACTCCACACATC-TC--AA-TGA-CCT-T-GGCTTT---AA--GGATTAT-ATCAAAACGAAA-G-TTCC-AATAAACTG---TTGA-AATAT--TGG-TTG-AATATGAGAGTTTATTTT
gi|4 : aGAGTG-CC-T-CA-A-CT-AATAA--AAACGGCTAT-GA-CAC----C-AGG--GACC-T-T-T-G-CCT-G--TTCAGTTTTTCAA-T-TGC-TATCCAATT-TTATGCAACAGTCTTTAC-------GA---ATGA-TC-AAT-ACC-TG-TTT-AAAAC------T-TTAAATTT--AA------------AATTTTTTCCT-A-T-A-CC-AGTACAT-AT--CT------------TC-TG--AA-TGA-CCT-TCAGCTTtcaattataca
gi|5 : CATGCC-TGTTGAGA-TA--AA-TG-AT-TATT-----GATA--TAACG
gi|5 : cAACAC----T-TTAA---T--AAT---A----AGGAACGTTTTCCTCA-T-A-Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacactttaataataaggaacgttttcctcataca
gi|6 : ccatgcctgttgagataaatgattattgatataacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAG----T-TTAAA--T--AATTTAA----GGGGACTTTTTCCTCATT-ATCA-AG-GGAT-AT--CT------------TC-TCCGAACTGACCCT-T-GGC-TT---AAGGGA--AATAATC-GAACGAAA-GCTTCA-TCT-AACTGT--TTGA-AATAT--T-GTTTA-AA-ATGA-AG----TTTTATTTTGGCATAa
gi|8 : CATGAC-TGTTGAGAATA--AAAGG-GT-TATT-----ATTCGTTAACGT-AGAT-GGTCGAGCGACC-TGCA-AACCGTCTAC--AAA-----AT--A-CCT----TGGTGT-GACC-C-T-TGG-CCA-GGTCT-AGTC---CAT-TGTGCCt
gi|9 : at-AAT-ACC-TG-TTCAAA-----------------------T---A----AGGAATTTTTTCCTCA-T----G-AG-G-ATGAT--CT------------TC-TT--AA-TGA-CCT-T-GACTTT---TA---A--AAT-CTT----C-AAA-G-TTCA-A-T-AACTA---TTGA-AATAT--T-G-TTG-AA-ATGA-AG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGTTTAATACATATAAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAA
Unaligned ( gi|10 ): AACAAGAATATCAGTAAAAGTGATGAATATGCTCCCCGAATTGCATCTAACCAATGAAATACTTATTTGACGAATGAGGAATGACTTATAAAATGA