lowQualScore : 22 22 11 222222 11 11 22222222222222 11 555555555555555 44444444444444444444 111111 1111 111 888888888888888888888
lowQualScore : 11 6 4 0 00 1 33 888888 3 33 2 2 1 6 99 3 0 99 99999999999999 5 5 11 3 3 33 3 33 666666666666666 44 555 3 00000000000000000000 999999 8888 4 2222 66 333 111111111111111111111 3
lowQualScore : .. . . . .. . .. ...... . .. . . . . .. . . .. .............. . . .. . . .. . .. ............... .. ... . .................... ...... .... . .... .. ... ..................... .
lowQualScore : 00 0 0 7 33 0 33 888888 2 88 5 2 2 0 00 0 2 88 33333333333333 0 0 22 1 1 22 1 55 444444444444444 66 888 3 22222222222222222222 333333 9999 0 5555 11 111 666666666666666666666 0
consensus : CAATTAGAGCATGACGAACGACGGC-GGGCACGGAC-AATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTNCGTATATAAAT---TATTG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTG-GGG-GAA--TGG-CGAGA--C--TC-GT--TAATTTCT--C-CACTTTATCT-AAAAC-AAAGAAA--A---AAT---AT-AC-CG-ATTT-AC----TAAA--ATC--ACAT----TATANCNT--C---CTCAAACATNCTTATG
Reference ( gi|3 ) : CAATTACGGCGTGACGAACAACGGA-AGACACGGACCAATAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTG-GGG-GAA--TGA-CAAGA--C--T--GT--CAATTTCT--C-CACTTTATCT-ACACC-AAGGAGA--A---AAT---AG-AC-TG-ATTT-AC----TAAA--ATC--ATAT----TATGCCATACCAAACTGAAACATATTTATGT
gi|4 : CAATTAGAGCATGACGACCCATGAC-GGGCATAGACAAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACTCTCT--ATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTG-TAG-GAA--TGG-C-AGA--C--T--GTGACCATTTCT--C-CATTCTATCT-A-A---AAGAAGAATA---AATC--AT-AC-TA-ATTT-AT----TAAA--AT
gi|8 : ACAACGGC-AGACACGGACCAATAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTG-GGG-GAA--TCA-C-AGACTC--T--GT--CAATCTGT--C-TACTTTATCT-ACAAC-AAtgcaataaaat
gi|16 : ACGATGGACAGGCACGGA----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTATcaac
gi|6 : aagaaactcgaaaatgtttAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT--GGG-GAA--TGATC--GA--CTTT--GT--CAGATGCTGCT-CATTTGATTG-AAAC--------A--G---CAT---AA-ACATG-ATTT-AT----TAAATGAT---ATATGAAATACGCCTCACC------AAACATACTTATgta
gi|10 : AAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTG-GGG-GAA--TGA-C-AGA--CTTT--GT--CAATTTCT--C-CATTTTATCT-ACAAT-AA-GAAA--A---AAT---AT-ACTTT-TTTT-AC----TAAA--ATT--ACAA----TAaattta
gi|17 : AT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAA-GGG-GAA--TGA-CAaatcttaaaatacatttctatg
gi|12 : aatgG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTG-GGG-GAAT-TG---GGGA--C--TCGGT--TAATTTCG--C-CACTTTAACT-AAA---AACGAAG--A---AAT---AT-AA-CA-ATTT-ACT---TAAA--ATT--ATAT----CActcttttttatttttgccaattcacctaaaacatgaaa
gi|13 : aaatTT-TT-CATATTGACA-TACCTCTCAC-ATTTG-GAG-GAAT-TG---GAGACTC--T--GC--TATTTTTT--T-CACTTTATCT-GAAAC-A---AAA--A---AGT---AT-AC-TG-ATTT-AC----TGAA--ATC--ACAaag
gi|5 : agaTT-TT-CAAATTGACA-TACCTCTTAC-ATTTC-GAG-GAAT-TG---GAGACTC--T--GC--TATTTTTT--T-CACCTCATCTAAAAAC-AA--AAA--A---AGT---AT-AC-TG-ATTT-AC----TAAA--ATC--ACAA----CATATCCT------TTCAAACATCTTTATGacatattt
gi|2 : aatcgaTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTG-C--GA--C--TCGGT--TAATTTC---A-CACTTTACCTAAAAAC-AAAGAAA--ATATAAT---AA-AT-CC-ATTT-ACTCAATAGA--A----ATAT----T-TAGCAT--CAAACTaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|1 : ggttatcTTTACT-TACCTCT-AC-ATTTG-GAGTGAAGTTG---GGGA--C--TCGGT--TAATT--T--C-CACTTT---T-AC-CT-AAAAAAA--A---AAtattttttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|15 : tggttatACA-TACCTCTCAC-ATGTA-TGG-GGA--TGG-C-TGA--T--TTCGT--C-ATTTCT--CTCACTTCATCT-AAAC---AGAAAC--A---AAT---TGTAC-TATATTT-GT----TTAA--TTCGAATAT----aaaaacccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|14 : ACA-TACCTCTTAC-ATTTT-GAG-GGA--TGA-C-CGATTC--C--TT--TAATTTCA--C-CATTTCATCTAAAACCGAAATAAA--T---AATGTAAT-AC-CG-ATTTCAT----TAGA--Aa
gi|11 : ataattgattaaacact-TACCTCTCAC-ATTTG-GGG-GAA--TGG--GGGA--C--TCGGT--TAATTTCG--C-CACTTTACCTAATAAC-AAAACAA--A---AAT---AT-AA-TA-ATCA-AT----TAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG
Alignments
lowQualScore : 1 22222 222222 11 11 111 111111 22222222222222 111 1111 444444444444444444444 11
lowQualScore : 2 4 0 2 66666 333333 0 11 4 3 00 22 111 3 999999 4 4 0 2 2 2 2 33 77777777777777 2 33 66 2 2 5 2 33 00 555 000 55 4 3333 2 777777777777777777777 11 33
lowQualScore : . . . . ..... ...... . .. . . .. .. ... . ...... . . . . . . . .. .............. . .. .. . . . . .. .. ... ... .. . .... . ..................... .. ..
lowQualScore : 5 2 0 0 55555 000000 8 00 6 2 66 66 777 3 666666 4 4 1 9 9 9 9 99 66666666666666 9 99 88 9 9 7 9 99 66 888 000 77 4 9999 2 777777777777777777777 00 88
consensus : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAA-TAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CGATTT-AC----TAAAATCACAN-C---ATA-NCAT-C----TTCAA--ACATATTTATG
Reference ( family-5254 ) : CAATTAGAGCATGACGAACGACGG-CGGGCACGGAC-AA-TAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTNCGTATATAAAT---TATTG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CGATTT-AC----TAAAATCACAT-T---ATA-NCNT-C----CTCAA--ACATNCTTATG
gi|1 : TTTACT-TACCTCT-AC-ATTTGG-AGTGAAGTTG---GGGAC-T-CG-G-TTA--ATT--T--C-CACTTTTACCT-AA-AAA--AAAAAAAA---AA
gi|10 : tggttatAAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-C-AGACTT-T--G-TCA--ATTTCT--C-CAT-TTTATCT-AC-AAT---AAGAAAA---AAT---ATACTTTTTTT-AC----TAAAATTACA------ATA-A-AT-C----TTAAAATACATTTCTATGcccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|11 : -TACCTCTCAC-ATTTGG-GG-GAA--TGG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTACCT-AATAAC--AAAACAAA---AAT---ATA
gi|12 : TG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTGG-GG-GAA--TTG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTAACT-AA-A----AACGAAGA---AAT---ATAA-CAATTT-ACT---TAAAATTATAT-C---Aataatcaattaatttgatttagcgtcaaatttatatttcctccgcacat
gi|13 : aaaTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-TTTATCT-GA-AAC--A---AAAA---AGT---ATAC-TGATTT-AC----TGAAATCACAA-C---ATA-aag
gi|14 : agaACA-TACCTCTTAC-ATTTTG-AG-GGA--TGA-C-CGAT-TCC--T-TTA--ATTTCA--C-CAT-TTCATCT-AA-AACCGAAATAAAT---AATGTAATAC-CGATTTCAT----TAGAAttt
gi|15 : ataattgattaaacactACA-TACCTCTCAC-ATGTAT-GG-GGA--TGG-CTGATT-T-C--G-TC---ATTTCT--CTCAC-TTCATCT--A-AAC--AGAAACAA---ATT---GTAC-
gi|16 : ACGATGGACAGGCACGGA-----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTATtatatttgtttaattcgaatata
gi|17 : aagaaactcgaaaatgtttAT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAAG-GG-GAA--TGA-C---AC-T-CTTT-TTT--ATTTTTG-C-CAA-TTCACCT-AA-AAC--Agta
gi|2 : aatgTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTG-CGA--C-T-C--GGTTA--ATTTC---A-CAC-TTTACCTAAA-AAC--AAAGAAAATATAAT---AAAT-CCATTT-ACTCAATAGAA--ATAT-T----TA-GCA--------TCAA--ACTTATTTtgaaa
gi|3 : ggttatcCAATTACGGCGTGACGAACAACGG-AAGACACGGACCAA-TAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-CAAGAC-T----G-TCA--ATTTCT--C-CAC-TTTATCT-AC-ACC--AAGGAGAA---AAT---AGAC-TGATTT-AC----TAAAATCATAT-T---ATG-CCATACCAAACTGAA--ACATATTTATGtttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|4 : CAATTAGAGCATGACGACCCATGA-CGGGCATAGAC-AAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACTC--TCTATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTGT-AG-GAA--TGG-C-AGAC-T----G-TGACCATTTCT--C-CAT-TCTATCT-AA-AA---GAAGAATA---AATC--ATAC-TAATTT-AT----TAAAATTGCAA-T---At
gi|5 : TT-TT-CAAATTGACA-TACCTCTTAC-ATTTCG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-CTCATCTAAA-AAC--AA--AAAA---AGT---ATAC-TGATTT-AC----TAAAATCACAA-C---ATA-TCCT------TTCAA--ACATCTTTATGaaat
gi|6 : aatcgaAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT-G-GG-GAA--TGATC--GACTT-T--G-TCA--GATGCTGCT-CAT-TTGAT-T-GA-AAC----AGCATA---AAC---AT----GATTT-AT----T-AAATGATATATGAAATACGCCT-C----ACCAA--ACATACTTATaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|8 : ACAACGG-CAGACACGGACCAA-TAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TCA-C-AGAC-T-CT-G-TCA--ATCTGT--C-TAC-TTTATCT-AC-AAC--AAaattta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG
Alignments
lowQualScore : 1 222222 11 111 111111 22222222222222 111 1111111 2222222
lowQualScore : 2 4 0 55 333333 0 11 4 3 888 22 111 22 999999 4 4 0 2 2 2 2 33 77777777777777 2 33 66 2 2 5 2 33 00 555 000 55 4 4 66 66 8888888 66 8888888
lowQualScore : . . . .. ...... . .. . . ... .. ... .. ...... . . . . . . . .. .............. . .. .. . . . . .. .. ... ... .. . . .. .. ....... .. .......
lowQualScore : 5 2 0 00 000000 8 00 6 2 444 22 777 44 666666 4 4 1 9 9 9 9 99 66666666666666 9 99 88 9 9 7 9 99 66 888 000 77 4 4 11 11 6666666 99 3333333
consensus : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CGATTT-AC-TAAA--AT-CACA-----ACA--TA-NCATCTTCAAACATATTTATG
Reference ( family-5254 ) : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CGATTT-AC-TAAA--AT-CACA-----NCA--TA-NCATCTTCAAACATATTTATG
gi|1 : TTTACT-TACCTCT-AC-ATTTGG-AGTGAAGTTG---GGGAC-T-CG-G-TTA--ATT--T--C-CACTTTTACCT-AA-AAA--AAAAAAAA---AA
gi|10 : tggttatAAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-C-AGACTT-T--G-TCA--ATTTCT--C-CAT-TTTATCT-AC-AAT---AAGAAAA---AAT---ATACTTTTTTT-AC-TAAA--AT-TACA-------A--TA-A-ATCTTAAAATACATTTcccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|11 : -TACCTCTCAC-ATTTGG-GG-GAA--TGG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTACCT-AATAAC--AAAACAAA---AAT---ATActatg
gi|12 : AATG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTGG-GG-GAA--TTG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTAACT-AA-A----AACGAAGA---AAT---ATAA-CAATTT-ACTTAAA--AT-TATA-----TCA--ataatcaattaatttgatttagcgtcaaatttatatttcctccgcacat
gi|13 : aTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-TTTATCT-GA-AAC--A---AAAA---AGT---ATAC-TGATTT-AC-TGAA--AT-CACA-----ACA--TA-aag
gi|14 : agaACA-TACCTCTTAC-ATTTTG-AG-GGA--TGA-C-CGAT-TCC--T-TTA--ATTTCA--C-CAT-TTCATCT-AA-AACCGAAATAAAT---AATGTAATAC-CGATTTCAT-TAGA--Attt
gi|15 : ataattgattaaacactACA-TACCTCTCAC-ATGTAT-GG-GGA--TGG-CTGATT-T-C--G-TC---ATTTCT--CTCAC-TTCATCT--A-AAC--AGAAACAA---ATT---GTAC-
gi|16 : ACGATGGACAGGCACGGA----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTATtatatttgtttaattcgaatata
gi|17 : aagaaactcgaaaatgtttAT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAAG-GG-GAA--TGA-C---AC-T-CTTT-TTT--ATTTTTG-C-CAA-TTCACCT-AA-AAC--Agta
gi|2 : aatgTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTG-CGA--C-T-C--GGTTA--ATTTC---A-CAC-TTTACCTAAA-AAC--AAAGAAAATATAAT---AAAT-CCATTT-AC-T-CA--AT-AGAA-----ATATTTA-GCA---TCAAACTTATTTtgaaa
gi|3 : ggttatcCAATTACGGCGTGACGAACAACGG-AAGACACGGACCAATAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-CAAGAC-T----G-TCA--ATTTCT--C-CAC-TTTATCT-AC-ACC--AAGGAGAA---AAT---AGAC-TGATTT-AC-TAAA--AT-CATATTATGCCA--TA-CCAAACTGAAACATATTTATGtttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|4 : CAATTAGAGCATGACGACCCATGA-CGGGCATAGACAAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACT-C-TCTATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTGT-AG-GAA--TGG-C-AGAC-T----G-TGACCATTTCT--C-CAT-TCTATCT-AA-AA---GAAGAATA---AATC--ATAC-TAATTT-AT-TAAA--AT-TGCA-----ATA--t
gi|5 : TT-TT-CAAATTGACA-TACCTCTTAC-ATTTCG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-CTCATCTAAA-AAC--AA--AAAA---AGT---ATAC-TGATTT-AC-TAAA--AT-CACA-----ACA--TA-TCCT-TTCAAACATCTTTATGaaat
gi|6 : aatcgaAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT-G-GG-GAA--TGATC--GACTT-T--G-TCA--GATGCTGCT-CAT-TTGAT-T-GA-AAC----AGCATA---AAC---AT----GATTT-AT-TAAATGATATATG-----AAA--TACGCCTCACCAAACATACTTATaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|8 : ACAACGG-CAGACACGGACCAATAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TCA-C-AGAC-T-CT-G-TCA--ATCTGT--C-TAC-TTTATCT-AC-AAC--AAaattta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG
Alignments
lowQualScore : 1 222222 11 111 111111 22222222222222 111 1111111 2222222
lowQualScore : 2 4 0 55 333333 0 11 4 3 888 22 111 22 999999 4 4 0 2 2 2 2 33 77777777777777 2 33 66 2 2 5 2 33 00 555 000 9999 4 4 55 4 3 4444444 66 7777777
lowQualScore : . . . .. ...... . .. . . ... .. ... .. ...... . . . . . . . .. .............. . .. .. . . . . .. .. ... ... .... . . .. . . ....... .. .......
lowQualScore : 5 2 0 00 000000 8 00 6 2 444 22 777 44 666666 4 4 1 9 9 9 9 99 66666666666666 9 99 88 9 9 7 9 99 66 888 000 9999 0 0 55 4 7 1111111 11 3333333
consensus : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT-CGCA--A---CA--TA-NCATCTTCAAACATATTTATG
Reference ( family-5254 ) : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT-CACA--A---CA--TA-NCATCTTCAAACATATTTATG
gi|1 : TTTACT-TACCTCT-AC-ATTTGG-AGTGAAGTTG---GGGAC-T-CG-G-TTA--ATT--T--C-CACTTTTACCT-AA-AAA--AAAAAAAA---AA
gi|10 : tggttatAAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-C-AGACTT-T--G-TCA--ATTTCT--C-CAT-TTTATCT-AC-AAT---AAGAAAA---AAT---ATACTTT-TTTT-AC-TAAA--AT-TACA-------A--TA-A-ATCTTAAAATACATTTcccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|11 : -TACCTCTCAC-ATTTGG-GG-GAA--TGG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTACCT-AATAAC--AAAACAAA---AAT---ATActatg
gi|12 : AATG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTGG-GG-GAA--TTG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTAACT-AA-A----AACGAAGA---AAT---ATAA-CA-ATTT-ACTTAAA--AT-TATA--T---CA--ataatcaattaatttgatttagcgtcaaatttatatttcctccgcacat
gi|13 : aTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-TTTATCT-GA-AAC--A---AAAA---AGT---ATAC-TG-ATTT-AC-TGAA--AT-CACA--A---CA--TA-aag
gi|14 : agaACA-TACCTCTTAC-ATTTTG-AG-GGA--TGA-C-CGAT-TCC--T-TTA--ATTTCA--C-CAT-TTCATCT-AA-AACCGAAATAAAT---AATGTAATAC-CG-ATTTCAT-TAGA--Attt
gi|15 : ataattgattaaacactACA-TACCTCTCAC-ATGTAT-GG-GGA--TGG-CTGATT-T-C--G-TC---ATTTCT--CTCAC-TTCATCT--A-AAC--AGAAACAA---ATT---GTAC-TATATTT-GT-TTAA--TT-CG-A--A---TA--TA-
gi|16 : ACGATGGACAGGCACGGA----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTAT
gi|17 : aagaaactcgaaaatgtttAT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAAG-GG-GAA--TGA-C---AC-T-CTTT-TTT--ATTTTTG-C-CAA-TTCACCT-AA-AAC--Agta
gi|2 : aatgTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTG-CGA--C-T-C--GGTTA--ATTTC---A-CAC-TTTACCTAAA-AAC--AAAGAAAATATAAT---AAAT-CC-ATTT-AC-T-CA--AT-AGAA--A---TATTTA-GCA---TCAAACTTATTTtgaaa
gi|3 : ggttatcCAATTACGGCGTGACGAACAACGG-AAGACACGGACCAATAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-CAAGAC-T----G-TCA--ATTTCT--C-CAC-TTTATCT-AC-ACC--AAGGAGAA---AAT---AGAC-TG-ATTT-AC-TAAA--AT-CATATTATGCCA--TA-CCAAACTGAAACATATTTATGtttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|4 : CAATTAGAGCATGACGACCCATGA-CGGGCATAGACAAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACT-C-TCTATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTGT-AG-GAA--TGG-C-AGAC-T----G-TGACCATTTCT--C-CAT-TCTATCT-AA-AA---GAAGAATA---AATC--ATAC-TA-ATTT-AT-TAAA--AT-TGCA--A---TA--t
gi|5 : TT-TT-CAAATTGACA-TACCTCTTAC-ATTTCG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-CTCATCTAAA-AAC--AA--AAAA---AGT---ATAC-TG-ATTT-AC-TAAA--AT-CACA--A---CA--TA-TCCT-TTCAAACATCTTTATGaaat
gi|6 : aatcgaAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT-G-GG-GAA--TGATC--GACTT-T--G-TCA--GATGCTGCT-CAT-TTGAT-T-GA-AAC----AGCATA---AAC---AT----G-ATTT-AT-TAAATGATATATG--A---AA--TACGCCTCACCAAACATACTTATaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|8 : ACAACGG-CAGACACGGACCAATAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TCA-C-AGAC-T-CT-G-TCA--ATCTGT--C-TAC-TTTATCT-AC-AAC--AAaattta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG
Alignments
lowQualScore : 1 222222 11 111 111111 22222222222222 111 11111111111111 222222
lowQualScore : 2 4 0 55 333333 0 11 4 3 888 22 111 22 999999 4 4 0 2 2 2 2 33 77777777777777 2 33 66 2 2 5 2 33 00 555 000 9999 4 4 55 44444444444444 66 666666
lowQualScore : . . . .. ...... . .. . . ... .. ... .. ...... . . . . . . . .. .............. . .. .. . . . . .. .. ... ... .... . . .. .............. .. ......
lowQualScore : 5 2 0 00 000000 8 00 6 2 444 22 777 44 666666 4 4 1 9 9 9 9 99 66666666666666 9 99 88 9 9 7 9 99 66 888 000 9999 0 0 55 33333333333333 99 666666
consensus : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
Reference ( family-5254 ) : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
gi|1 : TTTACT-TACCTCT-AC-ATTTGG-AGTGAAGTTG---GGGAC-T-CG-G-TTA--ATT--T--C-CACTTTTACCT-AA-AAA--AAAAAAAA---AA
gi|10 : tggttatAAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-C-AGACTT-T--G-TCA--ATTTCT--C-CAT-TTTATCT-AC-AAT---AAGAAAA---AAT---ATACTTT-TTTT-AC-TAAA--AT---TACA-------A--TAA-ATCTTAAAATACATTTcccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|11 : -TACCTCTCAC-ATTTGG-GG-GAA--TGG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTACCT-AATAAC--AAAACAAA---AAT---ATActatg
gi|12 : AATG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTGG-GG-GAA--TTG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTAACT-AA-A----AACGAAGA---AAT---ATAA-CA-ATTT-ACTTAAA--AT---ataatcaattaatttgatttagcgtcaaatttatatttcctccgcacat
gi|13 : aTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-TTTATCT-GA-AAC--A---AAAA---AGT---ATAC-TG-ATTT-AC-TGAA--AT---CACA--A---CA--TAtatatcaaag
gi|14 : agaACA-TACCTCTTAC-ATTTTG-AG-GGA--TGA-C-CGAT-TCC--T-TTA--ATTTCA--C-CAT-TTCATCT-AA-AACCGAAATAAAT---AATGTAATAC-CG-ATTTCAT-TAGA--Attt
gi|15 : ataattgattaaacactACA-TACCTCTCAC-ATGTAT-GG-GGA--TGG-CTGATT-T-C--G-TC---ATTTCT--CTCAC-TTCATCT--A-AAC--AGAAACAA---ATT---GTAC-TATATTT-GT-TTAA--TT---CG-A--A---TA--TA
gi|16 : ACGATGGACAGGCACGGA----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTAT
gi|17 : aagaaactcgaaaatgtttAT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAAG-GG-GAA--TGA-C---AC-T-CTTT-TTT--ATTTTTG-C-CAA-TTCACCT-AA-AAC--Agta
gi|2 : aatgTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTG-CGA--C-T-C--GGTTA--ATTTC---A-CAC-TTTACCTAAA-AAC--AAAGAAAATATAAT---AAAT-CC-ATTT-AC-T-CA--AT---AGAA--A---TATTTAGCA---TCAAACTTATTTtgaaa
gi|3 : ggttatcCAATTACGGCGTGACGAACAACGG-AAGACACGGACCAATAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-CAAGAC-T----G-TCA--ATTTCT--C-CAC-TTTATCT-AC-ACC--AAGGAGAA---AAT---AGAC-TG-ATTT-AC-TAAA--AT---CATATTATGCCA--TACCAAACTGAAACATATTTATGtttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|4 : CAATTAGAGCATGACGACCCATGA-CGGGCATAGACAAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACT-C-TCTATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTGT-AG-GAA--TGG-C-AGAC-T----G-TGACCATTTCT--C-CAT-TCTATCT-AA-AA---GAAGAATA---AATC--ATAC-TA-ATTT-AT-TAAA--AT---TGCA--A---TA--t
gi|5 : TT-TT-CAAATTGACA-TACCTCTTAC-ATTTCG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-CTCATCTAAA-AAC--AA--AAAA---AGT---ATAC-TG-ATTT-AC-TAAA--AT---CACA--A---CA--TATCCT-TTCAAACATCTTTATGaaat
gi|6 : aatcgaAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT-G-GG-GAA--TGATC--GACTT-T--G-TCA--GATGCTGCT-CAT-TTGAT-T-GA-AAC----AGCATA---AAC---AT----G-ATTT-AT-TAAATGATATATGAA--A---TA--CGCC-TCACCAAACATACTTATaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|8 : ACAACGG-CAGACACGGACCAATAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TCA-C-AGAC-T-CT-G-TCA--ATCTGT--C-TAC-TTTATCT-AC-AAC--AAaattta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG
Alignments
lowQualScore : 1 222222 11 111 111111 22222222222222 111 11111111111111 222222
lowQualScore : 2 4 0 55 333333 0 11 4 3 888 22 111 22 999999 4 4 0 2 2 2 2 33 77777777777777 2 33 66 2 2 5 2 33 00 555 000 9999 4 4 55 44444444444444 66 666666
lowQualScore : . . . .. ...... . .. . . ... .. ... .. ...... . . . . . . . .. .............. . .. .. . . . . .. .. ... ... .... . . .. .............. .. ......
lowQualScore : 5 2 0 00 000000 8 00 6 2 444 22 777 44 666666 4 4 1 9 9 9 9 99 66666666666666 9 99 88 9 9 7 9 99 66 888 000 9999 0 0 55 33333333333333 99 666666
consensus : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
Reference ( family-5254 ) : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
gi|1 : TTTACT-TACCTCT-AC-ATTTGG-AGTGAAGTTG---GGGAC-T-CG-G-TTA--ATT--T--C-CACTTTTACCT-AA-AAA--AAAAAAAA---AA
gi|10 : tggttatAAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-C-AGACTT-T--G-TCA--ATTTCT--C-CAT-TTTATCT-AC-AAT---AAGAAAA---AAT---ATACTTT-TTTT-AC-TAAA--AT---TACA-------A--TAA-ATCTTAAAATACATTTcccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|11 : -TACCTCTCAC-ATTTGG-GG-GAA--TGG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTACCT-AATAAC--AAAACAAA---AAT---ATActatg
gi|12 : AATG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTGG-GG-GAA--TTG--GGGAC-T-CG-G-TTA--ATTTCG--C-CAC-TTTAACT-AA-A----AACGAAGA---AAT---ATAA-CA-ATTT-ACTTAAA--AT---ataatcaattaatttgatttagcgtcaaatttatatttcctccgcacat
gi|13 : aTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-TTTATCT-GA-AAC--A---AAAA---AGT---ATAC-TG-ATTT-AC-TGAA--AT---CACA--A---CA--TAtatatcaaag
gi|14 : agaACA-TACCTCTTAC-ATTTTG-AG-GGA--TGA-C-CGAT-TCC--T-TTA--ATTTCA--C-CAT-TTCATCT-AA-AACCGAAATAAAT---AATGTAATAC-CG-ATTTCAT-TAGA--Attt
gi|15 : ataattgattaaacactACA-TACCTCTCAC-ATGTAT-GG-GGA--TGG-CTGATT-T-C--G-TC---ATTTCT--CTCAC-TTCATCT--A-AAC--AGAAACAA---ATT---GTAC-TATATTT-GT-TTAA--TT---CG-A--A---TA--TA
gi|16 : ACGATGGACAGGCACGGA----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTAT
gi|17 : aagaaactcgaaaatgtttAT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAAG-GG-GAA--TGA-C---AC-T-CTTT-TTT--ATTTTTG-C-CAA-TTCACCT-AA-AAC--Agta
gi|2 : aatgTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTG-CGA--C-T-C--GGTTA--ATTTC---A-CAC-TTTACCTAAA-AAC--AAAGAAAATATAAT---AAAT-CC-ATTT-AC-T-CA--AT---AGAA--A---TATTTAGCA---TCAAACTTATTTtgaaa
gi|3 : ggttatcCAATTACGGCGTGACGAACAACGG-AAGACACGGACCAATAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGA-CAAGAC-T----G-TCA--ATTTCT--C-CAC-TTTATCT-AC-ACC--AAGGAGAA---AAT---AGAC-TG-ATTT-AC-TAAA--AT---CATATTATGCCA--TACCAAACTGAAACATATTTATGtttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|4 : CAATTAGAGCATGACGACCCATGA-CGGGCATAGACAAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACT-C-TCTATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTGT-AG-GAA--TGG-C-AGAC-T----G-TGACCATTTCT--C-CAT-TCTATCT-AA-AA---GAAGAATA---AATC--ATAC-TA-ATTT-AT-TAAA--AT---TGCA--A---TA--t
gi|5 : TT-TT-CAAATTGACA-TACCTCTTAC-ATTTCG-AG-GAA--TTG--GAGAC-T-CT-G-CTA--TTTTTT--T-CAC-CTCATCTAAA-AAC--AA--AAAA---AGT---ATAC-TG-ATTT-AC-TAAA--AT---CACA--A---CA--TATCCT-TTCAAACATCTTTATGaaat
gi|6 : aatcgaAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT-G-GG-GAA--TGATC--GACTT-T--G-TCA--GATGCTGCT-CAT-TTGAT-T-GA-AAC----AGCATA---AAC---AT----G-ATTT-AT-TAAATGATATATGAA--A---TA--CGCC-TCACCAAACATACTTATaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|8 : ACAACGG-CAGACACGGACCAATAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TCA-C-AGAC-T-CT-G-TCA--ATCTGT--C-TAC-TTTATCT-AC-AAC--AAaattta
blockSeqs : G A . CC . . T G ATG GT ATT AT GGTTTT C A A T T . . ACAGACTTT G CC GC T . A T CG TAT GTA TAT C T TG CATATTATGCC TT CCAAAC
blockSeqs : C . CA . . A A CTG CT . AT C . . . . . . . GGGGACTCG . . G . . A . . . C CA . . . ATATGAAAT . TCCTT
blockSeqs : A . CC . . T G ATG AT . GC A . . . . . . . GGGGACTCG . . . . . . . . . . TG . . . CACAAC . CCTCA
blockSeqs : . . T . C A . TT C . . . . . . . GGAGACTCT . . . . . . . . . . CG . . . AGAAAT . GCA
blockSeqs : . TC C . . . . . . . ACCGATTCC . . . . . . . . . . CC . . . TGCAAT .
blockSeqs : GT . . . . . . . . GCTGATTTC . . . . . . . . . . TG . . . CACAAC .
blockSeqs : . . . . . . . GGAGACTCT . . . . . . . . . . TA . . . CGAAT .
blockSeqs : . . . . . . . ATCGACTTT . . . . . . . . . . TG . . .
blockSeqs : . . . . . ACAGACTCT . . . . . . . . . . G . . .
blockSeqs : . . . . . ACACTCTT . . . . . . . . . .
blockSeqs : . . . . . ACAAGACT . . . . . . . . .
blockSeqs : . . . . . GCGACTC . . . . . . . .
blockSeqs : . . . . . GCAGACT . . . . . . . .
blockSeqCons : ****** ** ** GCGGACTCT***** CG** CGCAAC********
originalCons : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGG-CGAGAC-T-C--G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
finalCons : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGGCGGACTCT-----G-TTA--ATTTCT--C-CAC-TTTATCT-AA-AAC--AAAGAAAA---AAT---ATACCG--ATTT-AC-TAAA--ATCGCAAC--------A--TANCATCTTCAAACATATTTATG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG
Alignments
lowQualScore : 1 222222 11 111 111111 111 111 11111111111111 222222
lowQualScore : 2 4 0 55 333333 0 11 4 3 888 22 111 22 999999 4 4 0 2 2 2 2 33 000 2 66 2 2 2 2 5555 00 555 000 9999 4 4 55 44444444444444 66 666666
lowQualScore : . . . .. ...... . .. . . ... .. ... .. ...... . . . . . . . .. ... . .. . . . . .... .. ... ... .... . . .. .............. .. ......
lowQualScore : 5 2 0 00 000000 8 00 6 2 444 22 777 44 666666 4 4 1 9 9 9 9 99 555 9 88 9 9 9 9 1111 66 888 000 9999 0 0 55 33333333333333 99 666666
consensus : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGGC-GGACTC-TGTCAATTTCT--C-CAC-TTTATCT-AA-AA-C--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
Reference ( family-5254 ) : CAATTACGGCGTGACGAACGACGG-CAGGCACGGACCAATAGCAATAGGTC------CTC--TCAGGTGACCCGATAAAATGCTACGTGTATAAAT---TANCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGGC-GGACTC-TGTTAATTTCT--C-CAC-TTTATCT-AA-AA-C--AAAGAAAA---AAT---ATAC-CG-ATTT-AC-TAAA--AT---CGCA--A---CA--TANCATCTTCAAACATATTTATG
gi|1 : TTTACT-TACCTCT-AC-ATTTGG-AGTGAAGTTGG--GGACTC-GGTTAATT--T--C-CACTTTTACCT-AA-AA-A--AAAAAAAA---AA
gi|10 : tggttatAAAT---GATTG-----TTTT-TT-CACATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGAC-AGACTT-TGTCAATTTCT--C-CAT-TTTATCT-AC-AA-T---AAGAAAA---AAT---ATACTTT-TTTT-AC-TAAA--AT---TACA-------A--TAA-ATCTTAAAATACATTTcccaaaaaaaaaagtaataatctatttagaaagagaaaagatagagcatccagcttatttttgtgcaaacatttatagacaccttcttcatcaaacaatggaatgtaatattaatacgtccaccagactgttatctctggacaccttactcta
gi|11 : -TACCTCTCAC-ATTTGG-GG-GAA--TGGG-GGACTC-GGTTAATTTCG--C-CAC-TTTACCT-AATAA-C--AAAACAAA---AAT---ATActatg
gi|12 : AATG-----CTTT-CT-T-TAATGACT-TACCTCTCAC-ATTTGG-GG-GAA--TTGG-GGACTC-GGTTAATTTCG--C-CAC-TTTAACT-AA-A-----AACGAAGA---AAT---ATAA-CA-ATTT-ACTTAAA--AT---ataatcaattaatttgatttagcgtcaaatttatatttcctccgcacat
gi|13 : aTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-AG-GAA--TTGG-AGACTC-TGCTATTTTTT--T-CAC-TTTATCT-GA-AA-C--A---AAAA---AGT---ATAC-TG-ATTT-AC-TGAA--AT---CACA--A---CA--TAtatatcaaag
gi|14 : agaACA-TACCTCTTAC-ATTTTG-AG-GGA--TGAC-CGATTC-CTTTAATTTCA--C-CAT-TTCATCT-AA-AA-CCGAAATAAAT---AATGTAATAC-CG-ATTTCAT-TAGA--Attt
gi|15 : ataattgattaaacactACA-TACCTCTCAC-ATGTAT-GG-GGA--TGGC-TGATTT-CGTC-ATTTCT--CTCAC-TTCATCT--A-AA-C--AGAAACAA---ATT---GTAC-TATATTT-GT-TTAA--TT---CG-A--A---TA--TA
gi|16 : ACGATGGACAGGCACGGA----TAGCAATAGGTCACACAACTCATTCAGGTGACCCAATAAAATG-TACATGTAT
gi|17 : aagaaactcgaaaatgtttAT---TGATG-----ATTT-TT-----TCGACA-TACCTCTCTT-ATTAAG-GG-GAA--TGAC---ACTCTTTTTTATTTTTG-C-CAA-TTCACCT-AA-AA-C--Agta
gi|2 : aatgTAATGACT-TACC-CTCAC-ATTTGTTGG-GAA--TTGC-G-ACTC-GGTTAATTTC---A-CAC-TTTACCT-AA-AAAC--AAAGAAAATATAAT---AAAT-CC-ATTT-AC-T-CA--AT---AGAA--A---TATTTAGCA---TCAAACTTATTTtgaaa
gi|3 : ggttatcCAATTACGGCGTGACGAACAACGG-AAGACACGGACCAATAGCAATAGGTC------CTC--TCAGGTGATCTGATAAAGTGCTATGTGTATAAAT---TAGCG-----CTTT-TT-CATATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TGACAAGA--C-TGTCAATTTCT--C-CAC-TTTATCT-AC-AC-C--AAGGAGAA---AAT---AGAC-TG-ATTT-AC-TAAA--AT---CATATTATGCCA--TACCAAACTGAAACATATTTATGtttctgcacacatttatagacatctgagaacctttttcatcaacgaattacatgtaatagtatacgtccataagaacattatctgtgtaaagcatacttcac
gi|4 : CAATTAGAGCATGACGACCCATGA-CGGGCATAGACAAATTGTAATACGTC------CTC--TCAAGTGACCAGAAAAAATACT-C-TCTATAAAT---TATTG------TTT-TT-CATATTGACA-TACCTCTCAC-ATTTGT-AG-GAA--TGGC-AGACTG-TGACCATTTCT--C-CAT-TCTATCT-AA-AA----GAAGAATA---AATC--ATAC-TA-ATTT-AT-TAAA--AT---TGCA--A---TA--t
gi|5 : TT-TT-CAAATTGACA-TACCTCTTAC-ATTTCG-AG-GAA--TTGG-AGACTC-TGCTATTTTTT--T-CAC-CTCATCTAAA-AA-C--AA--AAAA---AGT---ATAC-TG-ATTT-AC-TAAA--AT---CACA--A---CA--TATCCT-TTCAAACATCTTTATGaaat
gi|6 : aatcgaAGATC------C-C--T-AAGTAACCTAATAAAAT-CTCTGTA-ATAAATATTTATCGGGTTTTTTT-TTACATACTGACAATACCTCTCACTAGTT-G-GG-GAA--TGAT-CGACTT-TGTCAGATGCTGCT-CAT-TTGAT-T-GA-AA-C----AGCATA---AAC---AT----G-ATTT-AT-TAAATGATATATGAA--A---TA--CGCC-TCACCAAACATACTTATaacacttttaagatatacatgtatatgacttcatcagccatcttaatgcaatagtatatt
gi|8 : ACAACGG-CAGACACGGACCAATAGCAAAAGGTC------CTC--TCAGGTGATCTGATAAAATGCTATGTATATACAT---TAGTG-----CTTTCTT-CAAATTGACA-TACCTCTCAC-ATTTGG-GG-GAA--TCAC-AGACTC-TGTCAATCTGT--C-TAC-TTTATCT-AC-AA-C--AAaattta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTTCTTCATCAGCCATCTAAATGTAATAGCATGTTGATAGGAAGTATATTTATCAGACGAGTGTTTAGGTTGGTTCAGTGTCATTGTCCAGTTTCTGTATCTCAGGGAAAATGTCATATTTCACATTACTGCTATGAAGCATTAAAGTATATATAAACCTGAATATG
Unaligned ( gi|9 ): AAGGCTTCTTCATCAGCCATCTAAAATGCAATAGTATTCTGATAAAAAGTATATCACATGAAGTTGGTTCAGAGTCATTGTCCATTTTCTGTATCTCAGGAAAATGTAATACTATGAAAATTTAAGCTGTATATTAGCATACAGATG
Unaligned ( gi|18 ): CATGTCTCTATAAACATCAGCCACCTTAATGCATTAATCTATTG