lowQualScore : 4 11111 2 2222222222 2 333 1 1 11 333333 11 222 1 33333 1 1 55 1
lowQualScore : 0 66666 6 3 0000000000 1 6 0 6 888 2 6 3 1 6 3 6 11 6 999999 11 8 0 333 7 3 66666 3 8 6 7 1 55 8 2 2 5 2
lowQualScore : . ..... . . .......... . . . . ... . . . . . . . .. . ...... .. . . ... . . ..... . . . . . .. . . . . .
lowQualScore : 0 77777 7 8 0000000000 4 7 0 7 000 3 7 3 7 7 3 0 00 4 888888 00 0 8 000 3 3 77777 3 3 0 3 0 00 3 5 5 5 5
consensus : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAG-TACTGGTATTG-GGCCTGCTTTTATGC-ACAGCTGNCATCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCT--GACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA-TTTTTCTA----TGTTAAATACC-GGCGAGCACCGTTAATTATTGTAGCA-TCAATTCTCTCACATCGAGTTATAGTTATTATGCGTTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTTGATTTCCATTANGCCTACAAGGTCANCCAT
Reference ( gi|5 ) : TTATGAGATTTA-CCACTA-----AAGGTT-AATCCATTTATCAAAGTGAAAAA-TAAATATGTTACGCTTGTTCGG-TC-G-TACTGGTATTG-G-CCTGTTTTTATGC-ACAGCTGACATCCCCTGCA-TTT-CGGGCCATTAGTTTACCCCGC--ACACATATCGCT--G--GTCATGG--ATTTGCGTT-ATCGTCATCAATTC-A-GCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA-TTTTTCTT----TGTTAAATACC-AGCGAGCTCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATACATTC--TTTAGCTCGATGGTTTGATATTCTTTTGAATTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
gi|6 : ATGAGATTTAACCACTA-----AAGTTC-AATC-ATTT-TCAAAGTGAAAA--TAAATATGTTACGTTT---CGG-TC-G-TACTGGTATTG-GGCCTGTTTTTATGC-ACAGCTGACATCCCCTGCA-TTT-CCGGCCATTAGTTTGCCCCAC--ACACATATC-CT--GACGTCATGG--ATTTGCGTT-ATCGTCATCAATTC-A-AGTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTATTTTTTCTA----TGTTAAATACCAAGCGAGCTCTGTTAATTATTGTAGCA-TCAATTCTCTCACATCGAGTTATAGTTA-TATGCATTCCATTTAGCTCGATGGCTTAATATTCTTTTGAATTTTTCGGATTTTGATTT-CATTAGGCCTAC-AGGTCAGCCAT
gi|4 : taATGATATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAT----T---TTTTTTATTGTTGTTCAG-TCAG-TACTGGTATTG-GACCTGCTT--ATGC-ACAGCTGTCATTTCCCGTA-TTTTCGGGCCATTAGTTTGCCCCGC--ACACATATTGCT--GACGTCACGG--ATTTATGTT-ATCGTCATCAATTC-AAGCTGAAATTTTCAGAGGTAAGGACGTGGAAATTTAGGATC---------------TTTCTA----TGTTAAATACC-GGCGTGCACTGTGAATTAATTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATTATACGTTCCATTTAGCTCGATGGTTTGACATTCTCTTGATTTTTACGGATTTTGATTTCCATTAg
gi|3 : taATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-T---T-TGTTCTGCTTGTTCGG-TC-AATACTGGTATTGAA-CCTG-TTTTATGC-ACAGCTGCCACCCCTCGCA-TTT-caatgcaggccatgccttgcgagcatgtccattaaactcgtagttctaaagctttacttaggttcttcttacaattatcca
gi|10 : cgcattaTGAGATTTAACCACTATTTTAAAGGTTCAATCCATTTGTCAAAGTGAAAAAATAAATTTGCTATGCTTGTTCGG-TCAG-TACTGGTATTGAA-CCTG-TTTTATGC-ACAGCTGACCTCTCCCGCATTTT-CGGGTCATTAGTTTGTTCCGT--TCACATATCGCTGAG--GTCATGG--ATTTGCTTT-ATAGTCATCAATTCAA-GCTGAAATTtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacggattttgatttccattacaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|16 : tacTGAGATTTAACCACTA-----AAGGTT-
gi|9 : aaattccacactat-----AAGGTTCAATCCATTTATCAAAGTGAACAA-TAAATATGATACGTTTGTTCGG-TC-G-TACTGGTATTG-GGCCTGTTTTTATGC-ACAGCTGACATCCCCTGCA-TTTTCGGACCATTAGTTTGCCCCGC--ACACATATCACT--GACGTCATGG--ATTTGCGTT-ATCGTCATCAATTC-AAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA-TTTTTTTTTCTATGTTAAATACC-AGCGAGCACCGTTAATTATTGTAGCATTCAATTCTCTCcaa
gi|12 : TTCGGGTCAG-T-CTGGTATTG-AACCTGCTTTTGTGCCACAGCTGCCA-ATCCTGTA-TTT-CGAAC-ATTTATTTGCCCCGCCGACACATGTGAC------GTCACGGGGATTTACGTTTATCGTCATC-ATTCAA-GCGAAACTT
gi|11 : tgtTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTCGATTTCCATTACGCCTACAAGGTCATTCATg
gi|3 : TTACGGATTTTGATTTCCATTAgccttatatgcatgtccatcaaactcgtaatgccatcacgttttactttaggttcttttttacaattaccccccc
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TACTTTAGGTTCTTGTACAATTATCACCCCCCCCCCCTCCCATTACAAATGCAATTATTGTGTTTTGTCAAGTTGCATCGACAATATACATTGTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGATAACGAGCTAGGGCTCAATGTAGCAAACAATATCAAAATTAAGAATTGCCAATAGTGAGTACTTACCGTTGGTCGCCTGCTTTTAATAACTCGACTCAATTTATCCCGATGATGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAGCAAGGCATGTCACAGGCATTCGGTTGGGGACGAACGCTTTTTTAGTATTTGCATCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACATTCAGTTAGCGGCTATAGGGTGATTTGGGTCAATGGTCTAATGAATTCAGTTTCAGAATAGTGCGCAATCCTCGCTGTCAT
Unaligned ( gi|2 ): TTTTACTGTAGGTTCTTTTTACAATTATCCCCCCATTACAAATGCATCGATAATATATATTTTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCAGCTATGATAACGAGCTAGGACACAATGTAGCAAACAATATAAAAATTAAGATTGCCAATGGTGAGTACATTAACTTAGGTCGCCTGCTTATCAATAACTCGCCTCAAATTTATCCCGATGATGAGACTAAGTACTTGTCTTTCATGAAAATCACCTTGCAAAGCAGCAATAGCTGCCAAGTCAAATACAAGGCATGTCACAGGCATTCAGTCGTGACAGACGCCATTCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACAATTCGGTTAGCGGCTAGTCGGATCAATGGTCTAATTTGGCACGATTATGACATTCAGTTCAGACTAGTGCGCATTCCGTCGATGTCAT
Unaligned ( gi|7 ): TTTACTTTAGGTTCTTTTTACAATTATCACCCCCCCCCCCCCATTACAAATTGCAATTATTGTGTTTGTAAAGTTGCATCGACAATATATATTGTATGTTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGAATGACCCAGTATGTAGTAGCAAACAATATCAAATTTAAGATTGCCAATGGTGAGTACATTACCGTTGGTCGCCTGCTTTTATAACTCGACTCAAATTTATCCCGATGAGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAATTCAAGCAGGCATTCGGTTGTGGACAGACGCCTTTTTAGTATTTGCATCTATACCCAGGCAAGCATTTCTTTGT
Unaligned ( gi|8 ): TTTTACATTTTGTTCTTTTTACAATTATCGCCCGTTACCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTATGTATTGAATCTGGTAATGCTTTAAATGTTGTCCCCAGCTATGATAGAAGGAGCTGGGGCACAATATAGCAAACAATATCAAAATTAAGATTGCCATTTATGAGTACCTTAACTTAGGCCTATTGCTATTAATAACTCGGTTCAAAATCATCCCAATGATGGGACTTAAGTACTTGTATTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAAAAGGCAAGGCATATCACAGGCATACAGGCGTGGACATATGCCTTTTTAATATTT
Unaligned ( gi|13 ): AAGTACATGCATACATTCGGTTAGCGGCTAGTAGGGTCAATGGTCTAATGACTTCAGTTCAGAATAGTGCGCAATCCCTCCGCTGTC
Unaligned ( gi|14 ): TGTATATTGTATGTTAATTATTTCGTAATGCTTTCAATTATGTCCCC
Unaligned ( gi|15 ): TAGGTTCTTTTTACAATCCCCCCCCCATTACAAATGCAATTAT
Unaligned ( gi|17 ): ATGCTTTCAATTATGTCCCCCCAGCTATGATTACCA
Alignments
lowQualScore : 11111 2222 1 1 1 2 3333 11 222
lowQualScore : 44444 1 4444 1 5 2 6 1 5 1 5 0 5 1 99 66 0 99 6 3 3 1111 22 4 2 111 3 2 2 4 1 7 1
lowQualScore : ..... . .... . . . . . . . . . . . .. .. . .. . . . .... .. . . ... . . . . . . .
lowQualScore : 33333 7 2222 0 7 0 3 1 7 0 7 4 7 4 22 22 7 22 7 7 2 2222 00 0 0 000 2 0 5 0 0 3 0
consensus : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTC-AAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTAT---TTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGC-ATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
Reference ( family-5248 ) : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGGCCTGCTTTTATGC-ACAGCTGNCA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA----TTTTTCTATGTTAAATACC-GGCGAGCACCGTTAATTATTGTAGC-A-TCAATTCTCTCACATCGAGTTATAGTTATTATGCGTTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTTGATTTCCATTANGCCTACAAGGTCANCCAT
gi|10 : TGAGATTTAACCACTATTTTAAAGGTTCAATCCATTTGTCAAAGTGAAAAAATAAATTTGCTATGCTTGTTCGG-TCAGTACTGGTATTGAACCTG-TTTTATGC-ACAGCTGACC-TCTCCCGCATTTT-CGGGTCATTAGTTTGTTCCGT--TCACATATCGCTGAGGTCATGG--ATTTGCTTT-ATAGTCATCAATTC-AAGCTGAAATT
gi|11 : tacTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTCGATTTCCATTACGCCTACAAGGTCATTCAT
gi|12 : TTCGGGTCAGT-CTGGTATTGAACCTGCTTTTGTGCCACAGCTGCCAATCCT--GTA-TTT-CGAAC-ATTTATTTGCCCCGCCGACACATGT----GACGTCACGGGGATTTACGTTTATCGTCATC-ATTC-AAGCGAAACTTgccttatatgcatgtccatcaaactcgtaatgccatcacgttttactttaggttcttttttacaattaccccccc
gi|16 : tgtTGAGATTTAACCACTA-----AAGGTTCAAg
gi|3 : aaattccacactatATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAA-----AAATTTGTTCTGCTTGTTCGG-TCAATACTGGTATTGAACCTG-TTTTATGC-ACAGCTGCCA-CCCCTCGCA-TTT-
gi|3 : cgcattaTTACGGATTTTGATTTCCATTAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacggattttgatttccattacaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|4 : cgcattaatgagatttaaccactaaaggttcaatccatttatcaaagtgaaaaatttgttctgcttgttcggtcaatactggtattgaacctgttttatgcacagctgccacccctcgcattttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAT----T---TTTTTTATTGTTGTTCAG-TCAGTACTGGTATTGGACCTGCTT--ATGC-ACAGCTGTCA-TTTCCCGTA-TTTTCGGGCCATTAGTTTGCCCCGC--ACACATATTGCTGACGTCACGG--ATTTATGTT-ATCGTCATCAATTC-AAGCTGAAATTTTCAGAGGTAAGGACGTGGAAATTTAGGATC------------------TTTCTATGTTAAATACC-GGCGTGCACTGTGAATTAATTTAGCAA-TCAATTCTCCCATATCGGCTTATAGTTATTATACGTTCCATTTAGCTCGATGGTTTGACATTCTCTTGATTTTTACGGATTTTGATTTCCATTAcaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|5 : taATGAGATTTA-CCACTA-----AAGGTT-AATCCATTTATCAAAGTGAAAAA-TAAATATGTTACGCTTGTTCGG-TC-GTACTGGTATTGG-CCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CGGGCCATTAGTTTACCCCGC--ACACATATCGCTG--GTCATGG--ATTTGCGTT-ATCGTCATCAATTCA--GCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA----TTTTTCTTTGTTAAATACC-AGCGAGCTCTGTTAATTATTGTAGC-ATTCAATTCTCTCACATCGAGTTATAGTTATTATACATTC--TTTAGCTCGATGGTTTGATATTCTTTTGAATTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCATcaatgcaggccatgccttgcgagcatgtccattaaactcgtagttctaaagctttacttaggttcttcttacaattatcca
gi|6 : ttATGAGATTTAACCACTA-----AAG-TTCAATC-ATTT-TCAAAGTGAAAA--TAAATATGTTACGTTT---CGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CCGGCCATTAGTTTGCCCCAC--ACACATATC-CTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAG--TAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTAT---TTTTTCTATGTTAAATACCAAGCGAGCTCTGTTAATTATTGTAGC-A-TCAATTCTCTCACATCGAGTTATAGTTA-TATGCATTCCATTTAGCTCGATGGCTTAATATTCTTTTGAATTTTTCGGATTTTGATTT-CATTAGGCCTAC-AGGTCAGCCAT
gi|9 : ta-----AAGGTTCAATCCATTTATCAAAGTGAACAA-TAAATATGATACGTTTGTTCGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTTTCGGACCATTAGTTTGCCCCGC--ACACATATCACTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTC-AAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTATTTTTTTTTCTATGTTAAATACC-AGCGAGCACCGTTAATTATTGTAGC-ATTCAATTCTCTCg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TACTTTAGGTTCTTGTACAATTATCACCCCCCCCCCCTCCCATTACAAATGCAATTATTGTGTTTTGTCAAGTTGCATCGACAATATACATTGTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGATAACGAGCTAGGGCTCAATGTAGCAAACAATATCAAAATTAAGAATTGCCAATAGTGAGTACTTACCGTTGGTCGCCTGCTTTTAATAACTCGACTCAATTTATCCCGATGATGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAGCAAGGCATGTCACAGGCATTCGGTTGGGGACGAACGCTTTTTTAGTATTTGCATCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACATTCAGTTAGCGGCTATAGGGTGATTTGGGTCAATGGTCTAATGAATTCAGTTTCAGAATAGTGCGCAATCCTCGCTGTCAT
Unaligned ( gi|2 ): TTTTACTGTAGGTTCTTTTTACAATTATCCCCCCATTACAAATGCATCGATAATATATATTTTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCAGCTATGATAACGAGCTAGGACACAATGTAGCAAACAATATAAAAATTAAGATTGCCAATGGTGAGTACATTAACTTAGGTCGCCTGCTTATCAATAACTCGCCTCAAATTTATCCCGATGATGAGACTAAGTACTTGTCTTTCATGAAAATCACCTTGCAAAGCAGCAATAGCTGCCAAGTCAAATACAAGGCATGTCACAGGCATTCAGTCGTGACAGACGCCATTCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACAATTCGGTTAGCGGCTAGTCGGATCAATGGTCTAATTTGGCACGATTATGACATTCAGTTCAGACTAGTGCGCATTCCGTCGATGTCAT
Unaligned ( gi|7 ): TTTACTTTAGGTTCTTTTTACAATTATCACCCCCCCCCCCCCATTACAAATTGCAATTATTGTGTTTGTAAAGTTGCATCGACAATATATATTGTATGTTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGAATGACCCAGTATGTAGTAGCAAACAATATCAAATTTAAGATTGCCAATGGTGAGTACATTACCGTTGGTCGCCTGCTTTTATAACTCGACTCAAATTTATCCCGATGAGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAATTCAAGCAGGCATTCGGTTGTGGACAGACGCCTTTTTAGTATTTGCATCTATACCCAGGCAAGCATTTCTTTGT
Unaligned ( gi|8 ): TTTTACATTTTGTTCTTTTTACAATTATCGCCCGTTACCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTATGTATTGAATCTGGTAATGCTTTAAATGTTGTCCCCAGCTATGATAGAAGGAGCTGGGGCACAATATAGCAAACAATATCAAAATTAAGATTGCCATTTATGAGTACCTTAACTTAGGCCTATTGCTATTAATAACTCGGTTCAAAATCATCCCAATGATGGGACTTAAGTACTTGTATTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAAAAGGCAAGGCATATCACAGGCATACAGGCGTGGACATATGCCTTTTTAATATTT
Unaligned ( gi|13 ): AAGTACATGCATACATTCGGTTAGCGGCTAGTAGGGTCAATGGTCTAATGACTTCAGTTCAGAATAGTGCGCAATCCCTCCGCTGTC
Unaligned ( gi|14 ): TGTATATTGTATGTTAATTATTTCGTAATGCTTTCAATTATGTCCCC
Unaligned ( gi|15 ): TAGGTTCTTTTTACAATCCCCCCCCCATTACAAATGCAATTAT
Unaligned ( gi|17 ): ATGCTTTCAATTATGTCCCCCCAGCTATGATTACCA
Alignments
lowQualScore : 11111 2222 1 1 111 1
lowQualScore : 44444 1 4444 1 5 2 2 9 5 1 5 0 5 1 99 66 0 99 6 3 777 3 0 1 9 3 2 1 7
lowQualScore : ..... . .... . . . . . . . . . . . .. .. . .. . . ... . . . . . . . .
lowQualScore : 33333 7 2222 0 7 0 3 3 7 6 7 4 7 4 22 22 7 22 7 2 555 2 0 0 8 2 5 0 3
consensus : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
Reference ( family-5248 ) : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
gi|10 : TGAGATTTAACCACTATTTTAAAGGTTCAATCCATTTGTCAAAGTGAAAAAATAAATTTGCTATGCTTGTTCGG-TCAGTACTGGTATTGAACCTG-TTTTATGC-ACAGCTGACC-TCTCCCGCATTTT-CGGGTCATTAGTTTGTTCCGT--TCACATATCGCTGAGGTCATGG--ATTTGCTTT-ATAGTCATCAATTCAAGCTGAAATT
gi|11 : tacTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTCGATTTCCATTACGCCTACAAGGTCATTCAT
gi|12 : TTCGGGTCAGT-CTGGTATTGAACCTGCTTTTGTGCCACAGCTGCCAATCCT--GTA-TTT-CGAAC-ATTTATTTGCCCCGCCGACACATGT----GACGTCACGGGGATTTACGTTTATCGTCATC-ATTCAAGCGAAACTTgccttatatgcatgtccatcaaactcgtaatgccatcacgttttactttaggttcttttttacaattaccccccc
gi|16 : tgtTGAGATTTAACCACTA-----AAGGTTCAAg
gi|3 : aaattccacactatATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAA-----AAATTTGTTCTGCTTGTTCGG-TCAATACTGGTATTGAACCTG-TTTTATGC-ACAGCTGCCA-CCCCTCGCA-TTT-
gi|3 : cgcattaTTACGGATTTTGATTTCCATTAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacggattttgatttccattacaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|4 : cgcattaatgagatttaaccactaaaggttcaatccatttatcaaagtgaaaaatttgttctgcttgttcggtcaatactggtattgaacctgttttatgcacagctgccacccctcgcattttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAT----T---TTTTTTATTGTTGTTCAG-TCAGTACTGGTATTGGACCTGCTT--ATGC-ACAGCTGTCA-TTTCCCGTA-TTTTCGGGCCATTAGTTTGCCCCGC--ACACATATTGCTGACGTCACGG--ATTTATGTT-ATCGTCATCAATTCAAGCTGAAATTTTCAGAGGTAAGGACGTGGAAATTTAGGATC------------------TTTCTATGTTAAATACC-GGCGTGCACTGTGAATTAATTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATTATACGTTCCATTTAGCTCGATGGTTTGACATTCTCTTGATTTTTACGGATTTTGATTTCCATTAcaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|5 : taATGAGATTTA-CCACTA-----AAGGTT-AATCCATTTATCAAAGTGAAAAA-TAAATATGTTACGCTTGTTCGG-TC-GTACTGGTATTGG-CCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CGGGCCATTAGTTTACCCCGC--ACACATATCGCTG--GTCATGG--ATTTGCGTT-ATCGTCATCAATTCA-GCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTT-CTTTGTTAAATACC-AGCGAGCTCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATACATTC--TTTAGCTCGATGGTTTGATATTCTTTTGAATTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCATcaatgcaggccatgccttgcgagcatgtccattaaactcgtagttctaaagctttacttaggttcttcttacaattatcca
gi|6 : ttATGAGATTTAACCACTA-----AAG-TTCAATC-ATTT-TCAAAGTGAAAA--TAAATATGTTACGTTT---CGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CCGGCCATTAGTTTGCCCCAC--ACACATATC-CTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAG-TAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACCAAGCGAGCTCTGTTAATTATTGTAGCA-TCAATTCTCTCACATCGAGTTATAGTTA-TATGCATTCCATTTAGCTCGATGGCTTAATATTCTTTTGAATTTTTCGGATTTTGATTT-CATTAGGCCTAC-AGGTCAGCCAT
gi|9 : ta-----AAGGTTCAATCCATTTATCAAAGTGAACAA-TAAATATGATACGTTTGTTCGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTTTCGGACCATTAGTTTGCCCCGC--ACACATATCACTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTATTTTTTTTTCTATGTTAAATACC-AGCGAGCACCGTTAATTATTGTAGCATTCAATTCTCTCg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TACTTTAGGTTCTTGTACAATTATCACCCCCCCCCCCTCCCATTACAAATGCAATTATTGTGTTTTGTCAAGTTGCATCGACAATATACATTGTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGATAACGAGCTAGGGCTCAATGTAGCAAACAATATCAAAATTAAGAATTGCCAATAGTGAGTACTTACCGTTGGTCGCCTGCTTTTAATAACTCGACTCAATTTATCCCGATGATGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAGCAAGGCATGTCACAGGCATTCGGTTGGGGACGAACGCTTTTTTAGTATTTGCATCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACATTCAGTTAGCGGCTATAGGGTGATTTGGGTCAATGGTCTAATGAATTCAGTTTCAGAATAGTGCGCAATCCTCGCTGTCAT
Unaligned ( gi|2 ): TTTTACTGTAGGTTCTTTTTACAATTATCCCCCCATTACAAATGCATCGATAATATATATTTTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCAGCTATGATAACGAGCTAGGACACAATGTAGCAAACAATATAAAAATTAAGATTGCCAATGGTGAGTACATTAACTTAGGTCGCCTGCTTATCAATAACTCGCCTCAAATTTATCCCGATGATGAGACTAAGTACTTGTCTTTCATGAAAATCACCTTGCAAAGCAGCAATAGCTGCCAAGTCAAATACAAGGCATGTCACAGGCATTCAGTCGTGACAGACGCCATTCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACAATTCGGTTAGCGGCTAGTCGGATCAATGGTCTAATTTGGCACGATTATGACATTCAGTTCAGACTAGTGCGCATTCCGTCGATGTCAT
Unaligned ( gi|7 ): TTTACTTTAGGTTCTTTTTACAATTATCACCCCCCCCCCCCCATTACAAATTGCAATTATTGTGTTTGTAAAGTTGCATCGACAATATATATTGTATGTTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGAATGACCCAGTATGTAGTAGCAAACAATATCAAATTTAAGATTGCCAATGGTGAGTACATTACCGTTGGTCGCCTGCTTTTATAACTCGACTCAAATTTATCCCGATGAGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAATTCAAGCAGGCATTCGGTTGTGGACAGACGCCTTTTTAGTATTTGCATCTATACCCAGGCAAGCATTTCTTTGT
Unaligned ( gi|8 ): TTTTACATTTTGTTCTTTTTACAATTATCGCCCGTTACCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTATGTATTGAATCTGGTAATGCTTTAAATGTTGTCCCCAGCTATGATAGAAGGAGCTGGGGCACAATATAGCAAACAATATCAAAATTAAGATTGCCATTTATGAGTACCTTAACTTAGGCCTATTGCTATTAATAACTCGGTTCAAAATCATCCCAATGATGGGACTTAAGTACTTGTATTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAAAAGGCAAGGCATATCACAGGCATACAGGCGTGGACATATGCCTTTTTAATATTT
Unaligned ( gi|13 ): AAGTACATGCATACATTCGGTTAGCGGCTAGTAGGGTCAATGGTCTAATGACTTCAGTTCAGAATAGTGCGCAATCCCTCCGCTGTC
Unaligned ( gi|14 ): TGTATATTGTATGTTAATTATTTCGTAATGCTTTCAATTATGTCCCC
Unaligned ( gi|15 ): TAGGTTCTTTTTACAATCCCCCCCCCATTACAAATGCAATTAT
Unaligned ( gi|17 ): ATGCTTTCAATTATGTCCCCCCAGCTATGATTACCA
Alignments
lowQualScore : 11111 2222 1 1 111 1
lowQualScore : 44444 1 4444 1 5 2 2 9 5 1 5 0 5 1 99 66 0 99 6 3 777 3 0 1 9 3 2 1 7
lowQualScore : ..... . .... . . . . . . . . . . . .. .. . .. . . ... . . . . . . . .
lowQualScore : 33333 7 2222 0 7 0 3 3 7 6 7 4 7 4 22 22 7 22 7 2 555 2 0 0 8 2 5 0 3
consensus : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
Reference ( family-5248 ) : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
gi|10 : TGAGATTTAACCACTATTTTAAAGGTTCAATCCATTTGTCAAAGTGAAAAAATAAATTTGCTATGCTTGTTCGG-TCAGTACTGGTATTGAACCTG-TTTTATGC-ACAGCTGACC-TCTCCCGCATTTT-CGGGTCATTAGTTTGTTCCGT--TCACATATCGCTGAGGTCATGG--ATTTGCTTT-ATAGTCATCAATTCAAGCTGAAATT
gi|11 : tacTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTCGATTTCCATTACGCCTACAAGGTCATTCAT
gi|12 : TTCGGGTCAGT-CTGGTATTGAACCTGCTTTTGTGCCACAGCTGCCAATCCT--GTA-TTT-CGAAC-ATTTATTTGCCCCGCCGACACATGT----GACGTCACGGGGATTTACGTTTATCGTCATC-ATTCAAGCGAAACTTgccttatatgcatgtccatcaaactcgtaatgccatcacgttttactttaggttcttttttacaattaccccccc
gi|16 : tgtTGAGATTTAACCACTA-----AAGGTTCAAg
gi|3 : aaattccacactatATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAA-----AAATTTGTTCTGCTTGTTCGG-TCAATACTGGTATTGAACCTG-TTTTATGC-ACAGCTGCCA-CCCCTCGCA-TTT-
gi|3 : cgcattaTTACGGATTTTGATTTCCATTAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacggattttgatttccattacaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|4 : cgcattaatgagatttaaccactaaaggttcaatccatttatcaaagtgaaaaatttgttctgcttgttcggtcaatactggtattgaacctgttttatgcacagctgccacccctcgcattttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAT----T---TTTTTTATTGTTGTTCAG-TCAGTACTGGTATTGGACCTGCTT--ATGC-ACAGCTGTCA-TTTCCCGTA-TTTTCGGGCCATTAGTTTGCCCCGC--ACACATATTGCTGACGTCACGG--ATTTATGTT-ATCGTCATCAATTCAAGCTGAAATTTTCAGAGGTAAGGACGTGGAAATTTAGGATC------------------TTTCTATGTTAAATACC-GGCGTGCACTGTGAATTAATTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATTATACGTTCCATTTAGCTCGATGGTTTGACATTCTCTTGATTTTTACGGATTTTGATTTCCATTAcaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|5 : taATGAGATTTA-CCACTA-----AAGGTT-AATCCATTTATCAAAGTGAAAAA-TAAATATGTTACGCTTGTTCGG-TC-GTACTGGTATTGG-CCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CGGGCCATTAGTTTACCCCGC--ACACATATCGCTG--GTCATGG--ATTTGCGTT-ATCGTCATCAATTCA-GCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTT-CTTTGTTAAATACC-AGCGAGCTCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATACATTC--TTTAGCTCGATGGTTTGATATTCTTTTGAATTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCATcaatgcaggccatgccttgcgagcatgtccattaaactcgtagttctaaagctttacttaggttcttcttacaattatcca
gi|6 : ttATGAGATTTAACCACTA-----AAG-TTCAATC-ATTT-TCAAAGTGAAAA--TAAATATGTTACGTTT---CGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CCGGCCATTAGTTTGCCCCAC--ACACATATC-CTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAG-TAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACCAAGCGAGCTCTGTTAATTATTGTAGCA-TCAATTCTCTCACATCGAGTTATAGTTA-TATGCATTCCATTTAGCTCGATGGCTTAATATTCTTTTGAATTTTTCGGATTTTGATTT-CATTAGGCCTAC-AGGTCAGCCAT
gi|9 : ta-----AAGGTTCAATCCATTTATCAAAGTGAACAA-TAAATATGATACGTTTGTTCGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTTTCGGACCATTAGTTTGCCCCGC--ACACATATCACTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTATTTTTTTTTCTATGTTAAATACC-AGCGAGCACCGTTAATTATTGTAGCATTCAATTCTCTCg
blockSeqs : . A AAA T G A A C C C A . T CG TG GG T T TTT T A T T T C T A
blockSeqs : . A CAA T . A A C . C . . T . CG . . T . T . T T T C A .
blockSeqs : . A AA A . A A T . T . . . . CA . . T . . . A . . . A
blockSeqs : . A . A . . G T . A . . . . C . .
blockSeqs : . . . A . . G T . A . . . . . . .
blockSeqs : . . . . . . A . . .
blockSeqCons : ***** A***
originalCons : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAAAA-TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
finalCons : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAAA---TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TACTTTAGGTTCTTGTACAATTATCACCCCCCCCCCCTCCCATTACAAATGCAATTATTGTGTTTTGTCAAGTTGCATCGACAATATACATTGTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGATAACGAGCTAGGGCTCAATGTAGCAAACAATATCAAAATTAAGAATTGCCAATAGTGAGTACTTACCGTTGGTCGCCTGCTTTTAATAACTCGACTCAATTTATCCCGATGATGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAGCAAGGCATGTCACAGGCATTCGGTTGGGGACGAACGCTTTTTTAGTATTTGCATCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACATTCAGTTAGCGGCTATAGGGTGATTTGGGTCAATGGTCTAATGAATTCAGTTTCAGAATAGTGCGCAATCCTCGCTGTCAT
Unaligned ( gi|2 ): TTTTACTGTAGGTTCTTTTTACAATTATCCCCCCATTACAAATGCATCGATAATATATATTTTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCAGCTATGATAACGAGCTAGGACACAATGTAGCAAACAATATAAAAATTAAGATTGCCAATGGTGAGTACATTAACTTAGGTCGCCTGCTTATCAATAACTCGCCTCAAATTTATCCCGATGATGAGACTAAGTACTTGTCTTTCATGAAAATCACCTTGCAAAGCAGCAATAGCTGCCAAGTCAAATACAAGGCATGTCACAGGCATTCAGTCGTGACAGACGCCATTCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACAATTCGGTTAGCGGCTAGTCGGATCAATGGTCTAATTTGGCACGATTATGACATTCAGTTCAGACTAGTGCGCATTCCGTCGATGTCAT
Unaligned ( gi|7 ): TTTACTTTAGGTTCTTTTTACAATTATCACCCCCCCCCCCCCATTACAAATTGCAATTATTGTGTTTGTAAAGTTGCATCGACAATATATATTGTATGTTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGAATGACCCAGTATGTAGTAGCAAACAATATCAAATTTAAGATTGCCAATGGTGAGTACATTACCGTTGGTCGCCTGCTTTTATAACTCGACTCAAATTTATCCCGATGAGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAATTCAAGCAGGCATTCGGTTGTGGACAGACGCCTTTTTAGTATTTGCATCTATACCCAGGCAAGCATTTCTTTGT
Unaligned ( gi|8 ): TTTTACATTTTGTTCTTTTTACAATTATCGCCCGTTACCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTATGTATTGAATCTGGTAATGCTTTAAATGTTGTCCCCAGCTATGATAGAAGGAGCTGGGGCACAATATAGCAAACAATATCAAAATTAAGATTGCCATTTATGAGTACCTTAACTTAGGCCTATTGCTATTAATAACTCGGTTCAAAATCATCCCAATGATGGGACTTAAGTACTTGTATTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAAAAGGCAAGGCATATCACAGGCATACAGGCGTGGACATATGCCTTTTTAATATTT
Unaligned ( gi|13 ): AAGTACATGCATACATTCGGTTAGCGGCTAGTAGGGTCAATGGTCTAATGACTTCAGTTCAGAATAGTGCGCAATCCCTCCGCTGTC
Unaligned ( gi|14 ): TGTATATTGTATGTTAATTATTTCGTAATGCTTTCAATTATGTCCCC
Unaligned ( gi|15 ): TAGGTTCTTTTTACAATCCCCCCCCCATTACAAATGCAATTAT
Unaligned ( gi|17 ): ATGCTTTCAATTATGTCCCCCCAGCTATGATTACCA
Alignments
lowQualScore : 11111 444444 1 1 111 1
lowQualScore : 44444 1 444444 1 5 2 2 9 5 1 5 0 5 1 99 66 0 99 6 3 777 3 0 1 9 3 2 1 7
lowQualScore : ..... . ...... . . . . . . . . . . . .. .. . .. . . ... . . . . . . . .
lowQualScore : 33333 7 000000 0 7 0 3 3 7 6 7 4 7 4 22 22 7 22 7 2 555 2 0 0 8 2 5 0 3
consensus : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAA--AA--TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
Reference ( family-5248 ) : NNATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAA--A---TAAATNTGTTACGCTTGTTCGG-TCAGTACTGGTATTGGACCTGTTTTTATGC-ACAGCTGACA-TCCCCCGCA-TTT-CGGGCCATTAGTTTGCCCCGC--ACACATATCGCTGACGTCACGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACC-AGCGAGCNCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGANTTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCAT
gi|10 : TGAGATTTAACCACTATTTTAAAGGTTCAATCCATTTGTCAAAGTGAA--AAAATAAATTTGCTATGCTTGTTCGG-TCAGTACTGGTATTGAACCTG-TTTTATGC-ACAGCTGACC-TCTCCCGCATTTT-CGGGTCATTAGTTTGTTCCGT--TCACATATCGCTGAGGTCATGG--ATTTGCTTT-ATAGTCATCAATTCAAGCTGAAATT
gi|11 : tacTCTCTCACATCGAGTTATAGTTATTATGCATTCCATTTAGCTCGATGGTTTGATATTCTTTTGATTTTTACGGATTTCGATTTCCATTACGCCTACAAGGTCATTCAT
gi|12 : TTCGGGTCAGT-CTGGTATTGAACCTGCTTTTGTGCCACAGCTGCCAATCCT--GTA-TTT-CGAAC-ATTTATTTGCCCCGCCGACACATGT----GACGTCACGGGGATTTACGTTTATCGTCATC-ATTCAAGCGAAACTTgccttatatgcatgtccatcaaactcgtaatgccatcacgttttactttaggttcttttttacaattaccccccc
gi|16 : tgtTGAGATTTAACCACTA-----AAGGTTCAAg
gi|3 : aaattccacactatATGAGATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAA-------AAATTTGTTCTGCTTGTTCGG-TCAATACTGGTATTGAACCTG-TTTTATGC-ACAGCTGCCA-CCCCTCGCA-TTT-
gi|3 : cgcattaTTACGGATTTTGATTTCCATTAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacggattttgatttccattacaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|4 : cgcattaatgagatttaaccactaaaggttcaatccatttatcaaagtgaaaaatttgttctgcttgttcggtcaatactggtattgaacctgttttatgcacagctgccacccctcgcattttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATATTTAACCACTA-----AAGGTTCAATCCATTTATCAAAGTGAT------T---TTTTTTATTGTTGTTCAG-TCAGTACTGGTATTGGACCTGCTT--ATGC-ACAGCTGTCA-TTTCCCGTA-TTTTCGGGCCATTAGTTTGCCCCGC--ACACATATTGCTGACGTCACGG--ATTTATGTT-ATCGTCATCAATTCAAGCTGAAATTTTCAGAGGTAAGGACGTGGAAATTTAGGATC------------------TTTCTATGTTAAATACC-GGCGTGCACTGTGAATTAATTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATTATACGTTCCATTTAGCTCGATGGTTTGACATTCTCTTGATTTTTACGGATTTTGATTTCCATTAcaatgtatgccatgccttgtgagcatgcccatcaaactcgtattgctaatgttttacattttgttctttttacaattat
gi|5 : taATGAGATTTA-CCACTA-----AAGGTT-AATCCATTTATCAAAGTGAA--AAA-TAAATATGTTACGCTTGTTCGG-TC-GTACTGGTATTGG-CCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CGGGCCATTAGTTTACCCCGC--ACACATATCGCTG--GTCATGG--ATTTGCGTT-ATCGTCATCAATTCA-GCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTT-CTTTGTTAAATACC-AGCGAGCTCTGTTAATTATTGTAGCATTCAATTCTCTCACATCGAGTTATAGTTATTATACATTC--TTTAGCTCGATGGTTTGATATTCTTTTGAATTTTACGGATTTTGATTTCCATTAGGCCTACAAGGTCAGCCATcaatgcaggccatgccttgcgagcatgtccattaaactcgtagttctaaagctttacttaggttcttcttacaattatcca
gi|6 : ttATGAGATTTAACCACTA-----AAG-TTCAATC-ATTT-TCAAAGTGAA--AA--TAAATATGTTACGTTT---CGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTT-CCGGCCATTAGTTTGCCCCAC--ACACATATC-CTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAG-TAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTA---TTTTTTCTATGTTAAATACCAAGCGAGCTCTGTTAATTATTGTAGCA-TCAATTCTCTCACATCGAGTTATAGTTA-TATGCATTCCATTTAGCTCGATGGCTTAATATTCTTTTGAATTTTTCGGATTTTGATTT-CATTAGGCCTAC-AGGTCAGCCAT
gi|9 : ta-----AAGGTTCAATCCATTTATCAAAGTGAACAA---TAAATATGATACGTTTGTTCGG-TC-GTACTGGTATTGGGCCTGTTTTTATGC-ACAGCTGACA-TCCCCTGCA-TTTTCGGACCATTAGTTTGCCCCGC--ACACATATCACTGACGTCATGG--ATTTGCGTT-ATCGTCATCAATTCAAGCTAAAATTTTCAGAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTATTTTTTTTTCTATGTTAAATACC-AGCGAGCACCGTTAATTATTGTAGCATTCAATTCTCTCg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TACTTTAGGTTCTTGTACAATTATCACCCCCCCCCCCTCCCATTACAAATGCAATTATTGTGTTTTGTCAAGTTGCATCGACAATATACATTGTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGATAACGAGCTAGGGCTCAATGTAGCAAACAATATCAAAATTAAGAATTGCCAATAGTGAGTACTTACCGTTGGTCGCCTGCTTTTAATAACTCGACTCAATTTATCCCGATGATGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAGCAAGGCATGTCACAGGCATTCGGTTGGGGACGAACGCTTTTTTAGTATTTGCATCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACATTCAGTTAGCGGCTATAGGGTGATTTGGGTCAATGGTCTAATGAATTCAGTTTCAGAATAGTGCGCAATCCTCGCTGTCAT
Unaligned ( gi|2 ): TTTTACTGTAGGTTCTTTTTACAATTATCCCCCCATTACAAATGCATCGATAATATATATTTTATGTATATTATTTCGTAATGCTTTCAATTATGTCCCCAGCTATGATAACGAGCTAGGACACAATGTAGCAAACAATATAAAAATTAAGATTGCCAATGGTGAGTACATTAACTTAGGTCGCCTGCTTATCAATAACTCGCCTCAAATTTATCCCGATGATGAGACTAAGTACTTGTCTTTCATGAAAATCACCTTGCAAAGCAGCAATAGCTGCCAAGTCAAATACAAGGCATGTCACAGGCATTCAGTCGTGACAGACGCCATTCTATACCCCAGGCAAGCATTTCTTTGTTTAAGTACATGCATACAATTCGGTTAGCGGCTAGTCGGATCAATGGTCTAATTTGGCACGATTATGACATTCAGTTCAGACTAGTGCGCATTCCGTCGATGTCAT
Unaligned ( gi|7 ): TTTACTTTAGGTTCTTTTTACAATTATCACCCCCCCCCCCCCATTACAAATTGCAATTATTGTGTTTGTAAAGTTGCATCGACAATATATATTGTATGTTATATTATTTCGTAATGCTTTCAATTATGTCCCCCCAGCTATGAATGACCCAGTATGTAGTAGCAAACAATATCAAATTTAAGATTGCCAATGGTGAGTACATTACCGTTGGTCGCCTGCTTTTATAACTCGACTCAAATTTATCCCGATGAGGGACCAAGTTCTTGTCTTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAATTCAAGCAGGCATTCGGTTGTGGACAGACGCCTTTTTAGTATTTGCATCTATACCCAGGCAAGCATTTCTTTGT
Unaligned ( gi|8 ): TTTTACATTTTGTTCTTTTTACAATTATCGCCCGTTACCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTATGTATTGAATCTGGTAATGCTTTAAATGTTGTCCCCAGCTATGATAGAAGGAGCTGGGGCACAATATAGCAAACAATATCAAAATTAAGATTGCCATTTATGAGTACCTTAACTTAGGCCTATTGCTATTAATAACTCGGTTCAAAATCATCCCAATGATGGGACTTAAGTACTTGTATTTCAAGAAAATCACCTTGCAAAGCAGCAATCGCTGCCAAGTCAAAAGGCAAGGCATATCACAGGCATACAGGCGTGGACATATGCCTTTTTAATATTT
Unaligned ( gi|13 ): AAGTACATGCATACATTCGGTTAGCGGCTAGTAGGGTCAATGGTCTAATGACTTCAGTTCAGAATAGTGCGCAATCCCTCCGCTGTC
Unaligned ( gi|14 ): TGTATATTGTATGTTAATTATTTCGTAATGCTTTCAATTATGTCCCC
Unaligned ( gi|15 ): TAGGTTCTTTTTACAATCCCCCCCCCATTACAAATGCAATTAT
Unaligned ( gi|17 ): ATGCTTTCAATTATGTCCCCCCAGCTATGATTACCA