lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 1 111111111111111 33333333 11 444444444444444444444 11 111 111 33333333333333333 7777777777777777777777777777777777777777777777777777777777777777777777777777 1111 11111 1111 1111 1 88888888888888888888888888888888888888888888 11111 111 1 55555 1 1 1 222222 1 999999999999999999999999999999 2222 22 2 111 2 2 1 22 6666666 1 222222222 2 1 4 4 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 0 1 0 3 5 2 6666 2 55 0 2 5555 2 777 888 33 5 1 88888 2 33 2 3 3 888888888888888 00000000 6 44 3 3 3 55 111111111111111111111 3 44 999999 00 222 55 55 555 3 44444444444444444 0 3 77777 1111111111111111111111111111111111111111111111111111111111111111111111111111 66 7777 22222 5 7777 5 5 22 3 3333 5 5 55 8 5 3 6 22222222222222222222222222222222222222222222 33333 0 1 1 000 5 7 3 0 88888 0 0 0 444444 0 666666666666666666666666666666 3333 55 2 3 9 777 0 7 0 5 22 0000000 5 2 666666666 2 0 7 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : . . . . . . .... . .. . . .... . ... ... .. . . ..... . .. . . . ............... ........ . .. . . . .. ..................... . .. ...... .. ... .. .. ... . ................. . . ..... ............................................................................ .. .... ..... . .... . . .. . .... . . .. . . . . ............................................ ..... . . . ... . . . . ..... . . . ...... . .............................. .... .. . . . ... . . . . .. ....... . . ......... . . . . . ......................................................................................................................................................................................................................................................................................................................................................................................................................................................
lowQualScore : 8 8 1 1 0 5 8888 5 99 0 5 3333 5 888 888 44 0 2 88888 9 99 9 1 1 000000000000000 88888888 2 22 1 1 3 55 888888888888888888888 3 66 666666 00 777 00 00 000 6 22222222222222222 2 6 66666 0000000000000000000000000000000000000000000000000000000000000000000000000000 99 5555 55555 0 2222 0 0 66 4 9999 7 7 99 6 7 2 7 99999999999999999999999999999999999999999999 00000 8 0 4 666 0 3 3 7 55555 0 0 0 555555 0 555555555555555555555555555555 8888 00 5 7 0 777 7 5 0 5 55 0000000 0 5 000000000 5 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
consensus : TTTTTTTANAAGTTTTATGATG-TTT-A-TTN---C-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGA-NT--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTCG-AC-T-------------------AAG-CTCC--A------ACT--AT---TAC--A--ACATTGTA-TAT----------AGTTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACAT-TT-TAGTT-A--AT--A-TA---TGGTATAG-TATATTG----AATAA---ACA----ATAT-GAATACA--T----AGGTTA-----T-AC---CGAATA-AT-ACTATTTATATGA---TTTA-C-A-TAAGTT-ATATATA-GAC--A------ATAGG-TATA--C---AA-----------------TGT--A--TATGTAATGAATAAAACATGTCAAAGTCATATATAACATAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TANG-AT-TTT-CGA---A-G-A---CACAATAC-C-ACC-TATGCTGCC--GCAG-AGTCCA-CACAAACACA-A-CTAAGAGTCAAAAGATNCACCCTGGTGGGCCCAGCTTANCCGCGGGNACCGTTTTNTCCCAGTAGG-TGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAAAA---ATC-TTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACATT-GTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATAGTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTTC-TGGAAAATACCCAACACCAAT-ATGTTTCATTTTTACTGAATGAAGTGTAGCTGCTTATCATTTCCATATTATTAT--CTT-ACATATC-TCA------CCGTTTA---------TCAATGTTTATAGTTTTC--AAT-TTGTTTTGCAA
Reference ( gi|1 ) : TTTTTTTAAAAGTTTTATGATG-TTT-A-TTA---C-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGA-AT--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTCC-AC-A-------------------AAG-CTCC--A------ACT--AT---TAC--A--ACATTGTA-TAC----------AGTTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACATCTT-TAGTTAA--AT--A-TA---TGGTATAG-TATATTG----AATA----ACA----ATAT-GAATACA--T----AAGTTA-----T-AC---CGAATA-AT-ACTATTTATATGA---TTTA-C-A-TACGTT-ATATATA-GAC--A------GTAGG-TATA--C---AG-----------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACATAT-TGTATGACAAGTAAGCAAAGGTAAATT-ATA-AATC-TAGG-AC-TTT-CGA---A-G-A---CA-AAGATGC-ACCGTAT-CTG-C--GCAC-AGTCCATCACAAACATA-A-CTAGGCGTC-AAAGATG-ACCCTA--G----CAGCTTAGCCGTGGATATTGTTTTCT-CCAGAAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCTTGGAAGAGATATAATTTAGTCCATGATAAACATTAGCTGTAAATTGATGTTCACAAAACATTTATATATCAACTATTTG-CA----TTCATATGCTCA---A--GACGA--AAAAAGAT-GATTTTT-AGAT---AT-TATACATATAATGA--GTAGTTT-CAGCTGTAAGGAA--TCTAACAAATAT--AC-TTTTATGTTTGATAAAT--CT-TCAAGTCTACATAAGTGATAAGAAAGTTTTAAAGAGTGGTGTTTTTAAT---CGATTTTTTCCTGGAAAAAACCCA-CAACAATTATGTTTCATT--------------TGTAAC--ATTGTTCTCTCTA-ATAATTATTGCTTAACATATCATCAGGTTTCTCGATTAGATGAGTTGTAAATGTTTATA---TTCAGAGTATTGTTTTGCAA
gi|13 : TTTTTCTTCAAGTTTTATGATG-TTT-A-TTA---C-CCAGA--CCTAC-A-CT----ATA-A---CA---AA--TG-AACGA-TT--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------AGG-C--A-GCT-GCCGAGGA-TGGGGCCTCA-AC-T-------------------AAG-CTCC--A------ACT--AT---CAT--A--ACATTGTA-TAT----------AGTAA-TATATTACATC-ACG-C-A-GGAT-GAA-TA
gi|6 : ttTTTTTTTATA---TATATCATG-TTTTA-TTT---CGCCAGAA-CCTAT-A-TC----ATA-A---CA---AA--TA-AGTGACAG--C-TTA--AC-AA--A-TAT--------ATCGA-AA--------AGG-C--A-ACT-GCCGAGGA-TGGGGCCTCG-AC-T-------------------AAG-CTCC---------ACT--AT---TAC--A--A---TGTA-AAT----------AAT---GCTA-AAAATC-ACG-C-A-GGAT-GTA-T--------------A--ATA-A-TA---TGGT-TAA-TATATTG----AATAAT--ACA----TTAT--AATACA--T----AGATTA-----T-AC---TGAGTA-ATGAATATTTAAGTAG---TTAACC-A-TAAGTTAATATATAGGAC--A------ATt
gi|11 : tttTTTTTGTGGAGGTTTTATAATATTTT-A-TTT---C-TCACA--CCTATCA-CT----ATA-A---CATGTAA--CA-AAATA-ATAAC-TTA--TC-AT-TA-TA---------GAA-A-AAAAATG---TGGAA--A-GCT-GCTAGGGG-T-GGGCCCCG-AC-T-------------------GAG-CTCC--A------CCTAAATACATAT--A--GCA--ATA-TA-----------ATTTT-CCTATTGCATC-TCA-C-A-GGAT-ttaatgtatgatacacataatatttgtattgtacagtatgatgagcaatttaagtaaaga
gi|5 : attcatgtacagcatgcatggtgtttggtaattttttatttattttTTTTTTTAATA-TTTTATAATA-TTTTA-TTT---C-CCAGA--CCTATTA-CT----ATA-A---CA---AA--------GT-AT--C-TTA--TC-AT-TA-GA---------GAA-A-AAAAAAAGTGTGG-A--AAGCT-GCCAGGGA-TGGGGCCCTG-AC-T-------------------AAG-CTCC--A------CCTAAATACATAT--A--ACA----A-TAT----------ATTTT-CCTAATACATCTATGAC-ATTGAT-ATG-TAAAT-TC-TCGTTCA--GC--ATTATCTTTGTCTAG-TA-ATTG----TA-A----AAA----ATA------ACA--TTG--GAATTG-----TCAA---CAATTG-AT-ACTACATATGTGAATGTTTA-TGA-TA--TT-AT
gi|20 : cattacattatgtatatgatcgattatgtattatacatgacattgatttttttttttAAAAGATTTAAGATG-TTT-C-TTA---C-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGA-TT--C-TTA--AC-
gi|23 : tttaaAAAAGTTTTATGATG-TTT-ATTTA---C-CCAGC--TCTAC-A-GT----ACAGA---CA---AA--TG-AACGA-g
gi|3 : ttcttaaaAAGTTTTATGATG-TTT-A-TTA---C-CCAGA--CCTAC-ATCT----ATA-A----A---AA--TGAAACGA-TT--C-CTA--ACAAA-TA-TA---------ATC-AGAA--------TTG-CCGA-GCT-GCC-AGGACTGGGGC--TC-AC-T-------------------AAG-CTCTCAA------ACT--AT---TAC--A--ACCCTTTAGTAT----------AGTTA-CCTATTACATC-ACG-C---GGATGGTACTACATCTTCTAGTTAA--ATAAA-TA---TGG--TAG-TATA-TG----AATAATC-ACA----ATA--GAATACAACT----AAGTAT-----T-CC---CGAATA-AT-AC-ATTTATATGA---TTTA-C-ATTAAGTG-AT---TA-CAC--T------GTTAA-TAGA--C---AA-----------------GGT--AAGTATGTATTGAATAAAACATG-----GT--------AC-TATCTGTATGATAA-----CAAAGGTAAATTAATA-AATC-TACG-TT-TTT-CGACGGA-GAA---CATAATAC-C-ACC-TATGCTG-CCAGCAG-AGT---TCACAAAAACA-A-CTAAG
gi|4 : ttcttcGTTTTATG-T--TTT-A-TTA---C-CCAGA--CCTAT-A-CT----ATA-T---CA---AA--TG-AACGA-TT--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-TCCGAGGA-TGAGGCCTCA-AT-T-------------------AAG-CTCC--A------ACT--CT---TAC--A--ATATTGTA-CAT----------AATTA-CCTATTACATC-ACG-C-A-GGAT----------------GTTAA--AT--A-TA---TGG--TAG-CATATTG----AATAATGCACA----ATAT-GTATACA--T----AGGCTA-----T-AC---TAAGT---------------TGA---TTTA-C-A-TAAGTT-ATATAGA-GACCTATATAACATAGG-TATA--CATAAGTAAAAAAAGATACAATTTGT--A--TATGTAATGAATAAAACACATCAAAGTCATATACAa
gi|15 : ttctttttctttttggtttttttttgggggggggttgttcgtttATG-TTT-A-TTA---C-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AGTGA-CT--C-TTA--AC-AA-TA-TA---------TTC-C-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGACCTAG-AC-T-------------------AAG-CTCC--A------ACT--AT---TAC--A--ACAATGTA-TA--------------TG-CCAATTACATC-ACG-C-A-GGAT-GTA-tgta
gi|8 : atATG-TTT-A-CTA---C-CCAAA--CCTAT-G-CT----ATA-G---CA---TA--TG-AACGA-TT--C-CTA--GC-AA-TA-TA---------CTC-A-AA--------TGA-C--A-GCC-GCCGAGGA-TGGAGCCTCG-AT-T-------------------AAG-CTTC--A------ACT--AT---TAA--G--A---TG--------------------A-CCTATTGCATC-ATA---A-G--T--TA-TAC----T-TAGT--A--AT--A-T-------TAT-T-CATATT------AT-------------T------TACA--T----AAGTCA-----T-AT------ATA-GA-CCTAACAATAAG----TATA-C-G-CAAGTC-AAATA-A-GAT--A------AAAAA-TAT---C---A------------------TGT--A--T------TGAATAAATCATGTCAGAGTCATATATA
gi|12 : TG-TTT----TA---C-CCAGA--C-TAC-A-CT----ATA-AGAACA---AAAATA-AATGA-TT--C-CTA--AC-AAGTAATA---------ATC-C-AA--------TGG-C--A-GCTTGCCGAGGA-TGGGGCCTCG-AC-T-------------------AAA-CTCC--A------ACT--AT---TAC--ATTACATTGTA-TAT----------AGTTATCCTATTACATC-ACG-CGA-GGAT-GTA-TACATCTTGTAGTT
gi|19 : ttggtgttt-TTT-C-TTATATC-CCAGA--CCTAT-A-TC----ATA-A---CA---AA--TA-AGTAA-CG--C-TTA--AC-AA-TA-TA---------CTC-G-AA--------AGG-C--A-GCT-Gt
gi|18 : attttttt-TTT-A-TTT---C-CCAGAAACCATT-A-CTCTGTATA-GAT-TA---AA--AG-AAAAA-AT--CTCTACGGC-AA--A-TA---------AAA-G-AAACG-----TGA-C--A-GCT-GCCAGGGA-TGGGGCC
gi|14 : atgtatacatTT-A-TTT---C-CCA-A--CCTATCA-CT----ATA-A---CACGTAA--CA-AAGTA-AT--C-CTA--TC-AT-TA-GAGGGGGGGGGA---A-AAAGTG----TGGAA--A-ACT-GCCAGGGA-TGAAGCCACTGAC-T-------------------AAG-CTCC--A------ct
gi|22 : caatttttgttgttgagtttattaacatcT-A-TTT---C-CCAGA--CCTATCA-CT----ATA-A---C-----A--TGTAACAA-Acgaaacacttat
gi|10 : -A-TTT---C-CCAGA--CCTAT-A-TT----ATA-A---CA---AA--TG-AGTGA-CG--C-TTA--AC-AA-TA-GA---------TTC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTCG-ACTAAATCCTCAGGGCCTCGACTAAG-CTCC--A------ATT--AT---TAC--A--A---TGTA-TA--------------TG-CCTAAAACATC-ACC-C-A-GGAT-GTA-TATA------------------A-TA---TGG--TAA-TATATTG----AAT------------------AATACA--T----AAGGTACAATTT-ACGTATGAAAACAT-A-TATTTGTATgtatcttatcattagagaaaaaatgtgga
gi|9 : TCG-AC-A-------------------AAGGCTCC--ATGCTTGACC--AT---TTCGGA--ACATTTTG-TACTCTAACGTGTAGTTA-CCTATTAC-----CG--------------TCCCTTTC-TAGTTGATGAT--A-TA---TGGTA--G-TATATTG----AATA----ATATATAACAT-GAATACA--C----AGGTTA-----T-AC---CGAATA-AT-ACTATTTATATGT---TTTA-C-A-TAAGTT-ATATATA-GACT-AT-----ATAGG-TATA--C---AA-----------------TGTACA--TATGTAATGAATAAATCATGACGAAGTCATATATAACATAT-TGTATGACtgta
gi|17 : A--AT--A-TA---TGGTA--GCTATATTGCAATAATACA--ACA----ATATTGAATACA--TTTAGACGTTA-----T-AC----GAATA-AT-ACTATT-ATATGA---TTTA-C-A--AAGTT-ATATATA-GAC--A------ATAGGCTATAATC---AA-----------------TGT--A--TATt
gi|24 : TGTAATGAATAAAACATGTAAAAGTAATATATAACATAT-TATATGATAAGCA
gi|21 : CAAAGGTAAATT-ATA-AATC-TAGG-ACTTTT-CGA---A-G-A---CA-TATAC-C-ACC-TATGCTGCC--GCAG-AGTCCA
gi|2 : AAGTGAATT-GAACAATCGTAT--AT-TTTGCGA---A-G-AAGCTACAATATCC-ACC-TATGCTG-C--GCAGGAGTCCA-CACAAACACA-AACTAGA-GTC-AA-GATGCACCCTA--GGGCCCAG-TTAGCCGGGAGTACCGTTTTATCCCAGTAGG-TGA
gi|16 : TAAATA-ATA-AATC-TAGGAAT-TTT-CAA---AGG-A---C---ATATACTATC-TATGCTGCC--GCAG-AGTCCA-CACATACAGACA-CTAAGAGTCAAAAGATT-ACCCTGGTG----CAGCTTATCC-CAGAGACCATTTTCT-CCggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaataaaatgtctaaattaaattatactggaaaaatctttagtccaatattcttgatttttaactagatgtttcaaaacattgtattcaaatatgtggcaacgtttcatatcttacatactgatgataaaaaagattgattttttaaattgaatgtatacataattgaatgtagtttacacttaaggaaattctaaattacattaacattttatgtttgtatattcctataaagcatacctaagttatagtaaagttagattttagtttttcatttacaaatttttctggaaaatacccaacaccaatatgtttcatttttactgaatgaagtgtagctgcttatcatttccatattattatcttacatatctcaccgtttatcaatgtttatagttttcaatttgttttgcaatgcgttgcattctctttattcattt
gi|2 : ATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAAAA---ATC-TTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACATT-GTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATAGTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTTC-TGGAAAATACCCAACACCAAT-ATGTTTCATTTTTACTGAATGAAGTGTAGCTGCTTATCATTTCCATATTATTAT--CTT-ACATATC-TCA------CCGTTTA---------TCAATGTTTATAGTTTTC--AAT-TTGTTTTGCAAcagtagaggtgta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACGTTACATTTATGTTTCTATATCCTATAAGCTATACAAGTTACATGTACATGTAAATTTAAAGATTTTGTTCTTTCCTTTGTTTTCTTGAAAAAAAAAAAACCCTCCAACAATATACATGTATTCCATTTATTTATGAAAAGACAGATTAAAATTTTGCTTACAGTGTCCCATATATTTGTAATATTATTACCTCATATATCAAAATGTTTTTATAGTCTCATTTTGTTTGCAATGCGTGCATTCATTTTATATCTTTT
Unaligned ( gi|25 ): AATGTTTTACAGTGTCTCAGTTTGCTTGCAATGCGTGCATTCATTCTTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 22222222 22222222222222222222 11111111 33333333333333333333333333 111 222 111111 111 11111 1 222222222222222 222222222222222 11 1 111 2222222222 1 1111 2 22 55555555 11 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 333 2 4444 2 3333 22 2 2 2 1 2222 2 333333 11 1 1 222 1 2 11 1 2222 11 11 1 11 1 4444444 4444 2222222 1 555555555 22222 9999999999999999999999999 1111 1 22222222 1 1 88888888888888888888888888 11 22 11 1
lowQualScore : 33 7 2 1 2 55 9 2 5555 2 777 888 33 2 1 33 33 2 33 2 5 2 666666666666 2 2 77777777 33 5 2 2 3 3 55555555555555555555 3 44 888888 77 555 55555 888 44 3 55555555 2 55 55 3 55555 3 3 88888888888888888888888888 8 4 1 000 4 9999 4 666 222222 000 66 66 22222 5 0 5 88 0 888 0 5 55 66 0 222222222222222 999999999999999 77 77 77 5 5 888 7 3 8 3 0 11 8 8 8 1 6 8 444 5555555555 999 8 0 8 8 8 2 2 1111 3 3 44 66666666 6 1 00 11 1 6 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 111 0 2222 0 7777 77 88 4 2 3 3 2 4 0 0 0 3 5 2 3333 0 000000 88 5 5 111 5 0 4 88 5 1111 88 88 7 7 7 3 44 7 0 5 3333333 6666 4 7777777 3 8 333333333 7 6 77777 0000000000000000000000000 6666 77 3 7 7 88888888 3 7 3 99999999999999999999999999 88 22 88 4 3 7
lowQualScore : .. . . . . .. . . .... . ... ... .. . . .. .. . .. . . . ............ . . ........ .. . . . . . .................... . .. ...... .. ... ..... ... .. . ........ . .. .. . ..... . . .......................... . . . ... . .... . ... ...... ... .. .. ..... . . . .. . ... . . .. .. . ............... ............... .. .. .. . . ... . . . . . .. . . . . . . ... .......... ... . . . . . . . .... . . .. ........ . . .. .. . . . .......................................................................................................................... . ... . .... . .... .. .. . . . . . . . . . . . . .... . ...... .. . . ... . . . .. . .... .. .. . . . . .. . . . ....... .... . ....... . . ......... . . ..... ......................... .... .. . . . ........ . . . .......................... .. .. .. . . .
lowQualScore : 22 1 4 0 4 66 4 4 0000 4 444 222 44 5 2 77 77 7 77 7 7 9 444444444444 9 9 55555555 99 7 9 9 1 1 00000000000000000000 1 22 888888 99 888 55555 777 66 3 44444444 4 77 22 3 44444 3 6 44444444444444444444444444 9 4 1 111 4 4444 4 111 888888 222 11 11 00000 0 2 0 88 1 888 0 0 11 99 4 777777777777777 444444444444444 99 99 99 1 4 000 9 8 0 2 2 00 0 0 0 0 0 0 000 4444444444 222 0 0 0 0 0 5 5 2222 2 7 33 00000000 7 0 33 77 0 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 0 5555 0 5555 55 00 0 5 0 0 5 0 0 0 0 0 0 5 5555 0 000000 55 5 5 000 0 0 0 55 5 0000 55 55 3 3 3 3 77 3 7 0 3333333 7777 7 7777777 3 3 333333333 3 7 77777 7777777777777777777777777 7777 77 3 3 3 77777777 3 3 3 33333333333333333333333333 33 00 33 7 3 3
consensus : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG----AATA-AT--ACAA------TAT-GAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TA-AG--TTATATA---TA--GAC-A---ATAGG-TA--------TA--CAAT--GT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G----CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATATTCCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT-CTGGAAAAAA---------CCCAACAACA---A-TATGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-TTCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
Reference ( family-5148 ) : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG----AATA-A---ACAA------TAT-GAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TA-AG--TTATATA---TA--GAC-A---ATAGG-TA--------TA--CAAT--GT--A--TATGTAATGAATAAAACATGTCAAAGTCATATATAACATAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TANGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTCAAAAGATNCACCCTGGTGGGCCCAGCTTANCCGCGGGNACCGTTTTNTCCCAGTAGG-TGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAA-AAAT---CTTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACA-TTGTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATA-------GTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTT-CTGGAAAATA---------CCCAACACCA---A-TATGTTTCATT--TTTACTGAA---------TGAAGTGTAGCTGCTTATCAT-TTCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAGTTTTC--AAT-TTGTTTTGCAA
gi|1 : TTTTTTTAAAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAA-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-CAC--------------------AAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TACAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--TCTT--TAGTTAAA----T---A-TA-TGGTATAG-TATATTG----AAT--A---ACAA------TAT-GAATACA--T--AA--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TA-CG--TTATATA---TA--GAC-A---GTAGG-TA--------TA--CAGT--GT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACATAT-TGTATGACAAGTAAGCAAAGGTAAATT-ATA-AATC-TAGGA-CTTT-CGA---AG-A---CA-A-AGA-TGCACCGTAT-CTG-C-GCA-CAGTCCATCACAAACAT-A-ACTAGGCGTC-AAAGATG-ACCCTAG------CAGCTTAGCCGTGGATATTGTTTTCT-CCAGAAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCTTGGAAGAGATATAATTTAGTCCATGATAAACATTAGCTGTAAATTGATGTTCACAAAACATTTATATATCAACTAT-TTGCA----TTCATATGCTCA-A----GACG--AAAAAAGA-TGA-TTTTTAGAT---AT-TATACATATAATGA--GTAGTTT-CAGCTGTAAGGAA--TCTAA--CAAATATAC-TTTTATGTTTGATAAAT--CT-TCAAGTCTACATAAGTGATA-------AGAAAGTTTTAAAGAGTGGTGTTTTTAAT---CGATTTTTTCCTGGAAAAAA---------CCC-ACAACA---ATTATGTTTCATT-------------------------TGTAAC--ATTGTTCT-CTCTA-ATAATT----ATTGCTTAACATATCATCAGGTTTCTCGATTAGATGAGTTGTA--AATG--TTTATA---TTCAGAGTATTGTTTTGCAA
gi|10 : -A-TTTC-CCAGA--CCTAT-A-TT----ATA-A---CA---AA--TG-AGTGAC-G--C-TTA--AC-AA-TA-GA----------TTC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GACTAAATCCTCAGGGCCTCGACTAAG-CTCC--A------ATT--AT---TAC--A--A---T--GT-A--------TA-----TG-CCTAAAACATC-ACC-C-A-GGAT-GTA-TATA--A-TA--TGG-T-AA----T---A-TA-TTGAATAA-TACAT------AAGG-T---ACAATTTACGTAT-GAAAACA--T--A
gi|11 : TTTTTGTGGAGGTTTTATAATATTTTA-TTTC-TCACA--CCTATCA-CT----ATA-A---CATGTAA--CA-AAATAA-TAAC-TTA--TC-AT-TA-TA----------GAA-A-AAAAATG---TGGA--AAG-CT-GCTAGGGG-TGGG-CCCC-GAC--------------------TGAG-CTCC--A------CCTA-AA---TAC-----ATATA--GCAA--------TATAATTTT-CCTATTGCATC-TCA-C-A-GGAT-tatttgtattgta
gi|12 : attcatgtacagcatgcatggtgtttggtaattttttatttattttTGTTT----TAC-CCAGA--C-TAC-A-CT----ATA-AGAACA---AAAATA-AATGAT-T--C-CTA--AC-AAGTAATA----------ATC-C-AA--------TGGC--A-G-CTTGCCGAGGA-TGGGGCCTC-GAC--------------------TAAA-CTCC--A------ACT--AT---TAC--ATTACATT--GT-A--------TATAG-TTATCCTATTACATC-ACG-CGA-GGAT-GTA-TACA--T-CTTGTAGTT-
gi|13 : ttggtgtttTTTTTCTTCAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------AGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-AAC--------------------TAAG-CTCC--A------ACT--AT---CAT--A--ACATT--GT-A--------TATAG-TAA-TATATTACATC-ACG-C-A-GGAT-GAA-TAt
gi|14 : ttTT-A-TTTC-CCA-A--CCTATCA-CT----ATA-A---CACGTAA--CA-AAGTAA-T--C-CTA--TC-AT-TA-GAGGGGGGGGGAA---A-AAGTG-----TGGA--A-AACT-GCCAGGGA-TGAAGCCACTGAC--------------------TAAG-CTCC--A------t
gi|15 : caatttttgttgttgagtttattaacatcATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AGTGAC-T--C-TTA--AC-AA-TA-TA----------TTC-C-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGACCTA-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACAAT--GT-A--------TA-----TG-CCAATTACATC-ACG-C-A-GGAT-GTA-cgaaacacttat
gi|16 : atTAAATA-ATA-AATC-TAGGAATTTT-CAA---AG-G----ACATATA-C-TATC-TATGCTGCC-GCA-GAGTCCA-CACATACAG-ACACTAAGAGTCAAAAGATT-ACCCTGGTG----CAGCTTATCC-CAGAGACCATTTTCTCCCAGTAG
gi|17 : -AA----T---A-TA-TGGTA--GCTATATTGCAATAATACA---ACAA------TATTGAATACA--TTTAGACG--TTAT-AC-GAATAAT-ACTATT-ATATGA---TTTAC-A--A-AG--TTATATA---TA--GAC-A---ATAGGCTA--------TAATCAAT--GT--A--TATaggtgta
gi|18 : TTT-A-TTTC-CCAGAAACCATT-A-CTCTGTATA-GAT-TA---AA--AG-AAAAAA-T--CTCTACGGC-AA--A-TA----------AAA-G-AAACG-----TGAC--A-G-CT-GCCAGGGA-TGGGGCC
gi|19 : atgtatacatTT-A-TATC-CCAGA--CCTAT-A-TC----ATA-A---CA---AA--TA-AGTAAC-G--C-TTA--AC-AA-TA-TA----------CTC-G-AA--------AGGC--A-G-CT-Gct
gi|2 : attttttttttcAAGTGAATT-GAACAATCGTAT-A-TTTTGCGA---AG-AAGCTACA-ATATC-CACC-TATGCTG-C-GCAGGAGTCCA-CACAAACACAA-ACT-AGAGTC--AAGATGCACCCTA--GGGCCCAG-TTAGCCGGGAGTACCGTTTTATCCCAGTAGG-TGA
gi|2 : ATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAA-AAAT---CTTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACA-TTGTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATA-------GTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTT-CTGGAAAATA---------CCCAACACCA---A-TATGTTTCATT--TTTACTGAA---------TGAAGTGTAGCTGCTTATCAT-TTCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAGTTTTC--AAT-TTGTTTTGCAAggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaataaaatgtctaaattaaattatactggaaaaatctttagtccaatattcttgatttttaactagatgtttcaaaacattgtattcaaatatgtggcaacgtttcatatcttacatactgatgataaaaaagattgattttttaaattgaatgtatacataattgaatgtagtttacacttaaggaaattctaaattacattaacattttatgtttgtatattcctataaagcatacctaagttatagtaaagttagattttagtttttcatttacaaatttttctggaaaatacccaacaccaatatgtttcatttttactgaatgaagtgtagctgcttatcatttccatattattatcttacatatctcaccgtttatcaatgtttatagttttcaatttgttttgcaatgcgttgcattctctttattcattt
gi|20 : aagtgaattgaacaatcgtatattttgcgaagaagctacaatatccacctatgctgcgcaggagtccacacaaacacaaactagagtcaagatgcaccctagggcccagttagccgggagtaccgttttatcccagtaggtgaggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaAAAAGATTTAAGATGTTT-C-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-TTA--AC-tgcgttgcattctctttattcattt
gi|21 : tttaa--CAAAGGTAAATT-ATA-AATC-TAGGACTTTT-CGA---AG-A---CAT--ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-g
gi|22 : T-A-TTTC-CCAGA--CCTATCA-CT----ATA-A---CA---
gi|23 : AAAAGTTTTATGATGTTT-ATTTAC-CCAGC--TCTAC-A-GT----ACAGA---CA---AA--TG-AACGAtgtaacaaagtatcttatcattagagaaaaaatgtgga
gi|24 : ttcttaaaTGTAATGAATAAAACATGTAAAAGTAATATATAACATAT-TATATGATAAGCA--
gi|3 : TTCTT-CAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-ATCT----ATA-A----A---AA--TGAAACGAT-T--C-CTA--ACAAA-TA-TA----------ATC-AGAA--------TTGCCGA-G-CT-GCC-AGGACTGGGG-CTC--AC--------------------TAAG-CTCTCAA------ACT--AT---TAC--A--ACCCT--TT-AG-------TATAG-TTA-CCTATTACATC-ACG-C---GGATGGTACTACATCT-TC--TAGTTAAA----TAA-A-TA-TGG--TAG-TATA-TG----AATA-ATC-ACAA------TA--GAATACAACT--AA--G--TATT-CCCGAATAAT-AC-ATTTATATGA---TTTAC-ATTA-AG--TGAT-TA---CACTGTT-A---ATAG-------------A--CAAG--GT--AAGTATGTATTGAATAAAACATG-----GT--------AC-TATCTGTATGATA---A--CAAAGGTAAATTAATA-AATC-TACGT-TTTT-CGACGGAGAA---CATA-ATA-C-CACC-TATGCTGCCAGCA-GAGTTCA-CA-AAA-AC-A-ACTAAGA
gi|4 : GTTTTATG-T-TTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-T---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-TCCGAGGA-TGAGGCCTC-AAT--------------------TAAG-CTCC--A------ACT--CT---TAC--A--ATATT--GT-A--------CATAA-TTA-CCTATTACATC-ACG-C-A-GGAT-GT--------------TA----AA----T---A-TA-TGGTA--G-CATATTG----AATA-ATGCACAA------TAT-GTATACA--T--AG--G--CTAT-ACTAAGT--T-G--ATTTACATAA---GTTAT-A-TAGAGACCTATATAACATA--GGT-ATACATAAG-TAAAAAAAGATA--CAATTTGT--A--TATGTAATGAATAAAACACATCAAAGTCATATACA
gi|5 : ttctttttctttttggtttttttttgggggggggttgttcgtttTTTTTTTAATA-TTTTATAATATTTTA-TTTC-CCAGA--CCTATTA-CT----ATA-A---CA---AA--------GTA-T--C-TTA--TC-AT-TA-GA----------GAA-A-AAAAAAAGTGTGGA--AAG-CT-GCCAGGGA-TGGGGCCCT-GAC--------------------TAAG-CTCC--A------CCTAAATACATAT--A--ACA-------A--------TATAT-TTT-CCTAATACATCTATGAC-ATTGAT-ATG-TAAA--T-TC--TCGTT-CAGCATT---A-TCTTTGTCTAG-TA-ATTG------TA-A---AAAA------TA------ACA--T--TG--GAATTGTCAACAATTGAT-ACTACATATGTGAATGTTTATGA-TA-----TTATtgta
gi|6 : cattacattatgtatatgatcgattatgtattatacatgacattgatttttttttttTTTTTTTATA---TATATCATGTTTTA-TTTCGCCAGAA-CCTAT-A-TC----ATA-A---CA---AA--TA-AGTGACAG--C-TTA--AC-AAATA-TA-----------TCGA-AA--------AGGC--A-A-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A-------CT--AT---TAC--A--A---T--GT-A--------AATAA-TG---CTAA-AAATC-ACG-C-A-GGAT-GTA-TA-----------------A----T---AATA-TGGT-TAA-TATATTG----AATA-AT--ACAT------TAT--AATACA--T--AG--A--TTAT-ACTGAGTAATGAATATTTAAGTAG---TTAACCA-TA-AG--TTA-ATA---TA-----------TAGG------------A--CAAT--TT--A---ATGTA-TGA-TACA-CAT-----AAT-ATTTGTATTGTAC-AGTATGATGAGCA--
gi|7 : tttACGTTA-CATTT-ATGTTTC-TATA-TCCTATAAGCTATAC--AAGTTACATGTACATGTAAATTTAA--AGATTTTGTTCTTTCCTTTG-----TTTT-CTTGAAAAAAAAAAAACCCTCCAACAATATACA-TGTATTCCATTTATTTA-TGAAAAGACAGATTAAAATTT---TGCTTACAGTGTCCCATA-TATTTGTAAT--ATT-AT-TACC-TCA---------TATA---------TCAAAATGTTTTTATAG-TCTC--ATT-TTG-TTTGCAAatttaagtaaaga
gi|8 : ATGTTT-A-CTAC-CCAAA--CCTAT-G-CT----ATA-G---CA---TA--TG-AACGAT-T--C-CTA--GC-AA-TA-TA----------CTC-A-AA--------TGAC--A-G-CC-GCCGAGGA-TGGAGCCTC-GAT--------------------TAAG-CTTC--A------ACT--AT---TAA--G--A---T--G-------------------A-CCTATTGCATC-ATA---A-G--T--TA-TAC------T--TAG-T-AA----T---ATTA-T-TCATAT-TAT-TTA----CATA-A---GTCA------TAT-------A--T--AG----------ACCTAACAAT-A--A---GTA--------TAC-G-CA-AG--TCAAATA----A--GAT-A---AAAAA-TA--------T---C-AT--GT--A--T------TGAATAAATCATGTCAGAGTCATATATAtgcgtgcattcattttatatctttt
gi|9 : TC-GAC--------------------AAAGGCTCC--ATGCTTGACC--AT---TTCGGA--ACATTTTGT-ACTCTAACGTGTAG-TTA-CCTATTAC-----CG--------------TCCC--T-TTC-TAGTT-GA----TGATA-TA-TGGTA--G-TATATTG----AATA-ATATATAA------CAT-GAATACA--C--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGT---TTTAC-A-TA-AG--TTATATA---TA--GACTAT--ATAGG-TA--------TA--CAAT--GTACA--TATGTAATGAATAAATCATGACGAAGTCATATATAACATAT-TGTATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AATGTTTTACAGTGTCTCAGTTTGCTTGCAATGCGTGCATTCATTCTTTT
Alignments
lowQualScore : 111111111111 22222222 22222222222222222222 11111111 66666666666666666666666666 111 111 1111111 11111 1 4444444444444444444444444444444444444444444444444 11 1 111 2222222222 1 1111 22 1 333333 11 1 1 222 1 2222 222 11 11 1 1 1 1 2222 1 333333 11 1 1 222 1 1 11 1 1 1 11 11 1 2 33 4444444 3333333 3333333 11 333333 1 1 333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 22 11 1
lowQualScore : 33 7 2 1 2 55 9 2 5555 2 777 888 33 2 1 33 33 2 33 2 5 2 666666666666 2 2 77777777 33 5 2 2 3 3 55555555555555555555 3 44 888888 77 555 55555 888 44 3 55555555 2 55 55 3 55555 3 3 33333333333333333333333333 8 4 888 4 4 222 66 9999999 66 66 22222 5 0 5 55 555 888 0 5 0 0 3 5555555555555555555555555555555555555555555555555 77 77 5 5 999 7 9 8 3 0 11 8 8 8 6 8 444 5555555555 999 8 0 8 8 8 2 2 1111 3 00 3 333333 6 00 6 5 5 222 5 2222 111 66 88 22 1 1 1 1 1 1 5 5 5 1 5 1 3333 5 000000 88 5 5 111 5 5 1 88 5 5 5 88 88 0 7 7 7 3 3 7 44 3333333 7777777 1 2222222 88 888888 6 3 888888 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 00 88 1 3 7
lowQualScore : .. . . . . .. . . .... . ... ... .. . . .. .. . .. . . . ............ . . ........ .. . . . . . .................... . .. ...... .. ... ..... ... .. . ........ . .. .. . ..... . . .......................... . . ... . . ... .. ....... .. .. ..... . . . .. ... ... . . . . . ................................................. .. .. . . ... . . . . . .. . . . . . ... .......... ... . . . . . . . .... . .. . ...... . .. . . . ... . .... ... .. .. .. . . . . . . . . . . . . .... . ...... .. . . ... . . . .. . . . .. .. . . . . . . . .. ....... ....... . ....... .. ...... . . ...... .......................................................................................................... .. .. .. . . .
lowQualScore : 22 1 4 0 4 66 4 4 0000 4 444 222 44 5 2 77 77 7 77 7 7 9 444444444444 9 9 55555555 99 7 9 9 1 1 00000000000000000000 1 22 888888 99 888 55555 777 66 3 44444444 4 77 22 3 44444 3 6 11111111111111111111111111 9 4 000 4 4 333 11 6666666 99 99 00000 0 2 0 66 444 888 0 0 1 4 6 3333333333333333333333333333333333333333333333333 99 99 1 4 999 9 6 0 2 2 00 0 0 0 0 0 000 4444444444 222 0 0 0 0 0 5 5 2222 2 77 3 333333 7 33 7 5 5 000 0 5555 000 55 00 00 0 0 0 0 0 0 5 5 5 0 0 0 5555 0 000000 55 5 5 000 0 5 0 55 5 0 0 55 55 7 3 3 3 3 7 3 00 3333333 7777777 0 7777777 33 333333 0 3 333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 00 33 0 3 3
consensus : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----A--GATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA------CCC-ACAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
Reference ( family-5148 ) : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATATTCCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----A--GATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA------CCCAACAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
gi|1 : TTTTTTTAAAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAA-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-CAC--------------------AAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TACAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--TCTT--TAGTTAAA----T---A-TA-TGGTATAG-TATATTG-AATA----ACA--ATA----TGAATACA--T--AA--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TACGTTATATATA--GAC--A------GTAGG-TATA--CA-G-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACATAT-TGTATGACAAGTAAGCAAAGGTAAATT-ATA-AATC-TAGGA-CTTT-CGA---AG-A---CA-A-AGA-TGCACCGTAT-CTG-C-GCA-CAGTCCATCACAAACAT-A-ACTAGGCGTC-AAAGATG-ACCCTA--G---CAGCTTAGCCGTGGATATTGTTTTCT-CCAGAAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCTTGGAAGAGATATAATTTAGTCCATGATAAACATTAGCTGTAAATTGATGTTCACAAAACATTTATATATCAACTAT-TTGCA----TTCATATGCTCA-A----GACG--AAAAAAGA-TGA-TTTTTAGAT---AT-TATACATATAATGA--GTAGTTT-CAGCTGTAAGGAA--TCTAA--CAAATATAC-TTTTATGTTTGATAAAT--CT-TCAAGTCTACATAAGTGATA-------AGAAAGTTTTAAA--GAGTGGTGTTTTTAAT---CGA-TTTTTTCCTGGAAAAAA------CCC-ACAACAATTA------TGTTTCATT-------------------------TGTAAC-----ATTGT-TCTCTCTA-ATAATT----ATTGCTTAACATATCATCAGGTTTCTCGATTAGATGAGTTGTA--AATG--TTTATA---TTCAGAGTATTGTTTTGCAA
gi|10 : -A-TTTC-CCAGA--CCTAT-A-TT----ATA-A---CA---AA--TG-AGTGAC-G--C-TTA--AC-AA-TA-GA----------TTC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GACTAAATCCTCAGGGCCTCGACTAAG-CTCC--A------ATT--AT---TAC--A--A---T--GT-A--------TA-----TG-CCTAAAACATC-ACC-C-A-GGAT-GTA-TATA------------------------A-TA-TGG--TAA-TATATTG-AATAAT--ACA--
gi|11 : TTTTTGTGGAGGTTTTATAATATTTTA-TTTC-TCACA--CCTATCA-CT----ATA-A---CATGTAA--CA-AAATAA-TAAC-TTA--TC-AT-TA-TA----------GAA-A-AAAAATG---TGGA--AAG-CT-GCTAGGGG-TGGG-CCCC-GAC--------------------TGAG-CTCC--A------CCTA-AA---TAC-----ATATA--GCAA--------TATAATTTT-CCTATTGCATC-TCA-C-A-GGAT-taaggtacaatttacgtatgaaaacatatatttgtattgta
gi|12 : attcatgtacagcatgcatggtgtttggtaattttttatttattttTGTTT----TAC-CCAGA--C-TAC-A-CT----ATA-AGAACA---AAAATA-AATGAT-T--C-CTA--AC-AAGTAATA----------ATC-C-AA--------TGGC--A-G-CTTGCCGAGGA-TGGGGCCTC-GAC--------------------TAAA-CTCC--A------ACT--AT---TAC--ATTACATT--GT-A--------TATAG-TTATCCTATTACATC-ACG-CGA-GGAT-GTA-TACA--T-CTTGTAGTT-
gi|13 : ttggtgtttTTTTTCTTCAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------AGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-AAC--------------------TAAG-CTCC--A------ACT--AT---CAT--A--ACATT--GT-A--------TATAG-TAA-TATATTACATC-ACG-C-A-GGAT-GAA-TAt
gi|14 : ttTT-A-TTTC-CCA-A--CCTATCA-CT----ATA-A---CACGTAA--CA-AAGTAA-T--C-CTA--TC-AT-TA-GAGGGGGGGGGAA---A-AAGTG-----TGGA--A-AACT-GCCAGGGA-TGAAGCCACTGAC--------------------TAAG-CTCC--A------t
gi|15 : caatttttgttgttgagtttattaacatcATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AGTGAC-T--C-TTA--AC-AA-TA-TA----------TTC-C-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGACCTA-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACAAT--GT-A--------TA-----TG-CCAATTACATC-ACG-C-A-GGAT-GTA-cgaaacacttat
gi|16 : atTAAATA-ATA-AATC-TAGGAATTTT-CAA---AG-G----ACATATA-C-TATC-TATGCTGCC-GCA-GAGTCCA-CACATACAG-ACACTAAGAGTCAAAAGATT-ACCCTGGTG---CAGCTTATCC-CAGAGACCATTTTCTCCCAGTAG
gi|17 : -AA----T---A-TA-TGGTA--GCTATATTGCAATAAT--ACA--ACAATATTGAATACA--TTTAGACG--TTAT-AC-GAATAAT-ACTATT-ATATGA---TTTAC-A--AAGTTATATATA--GAC--A------ATAGGCTATAATCA-A-------------------TGT--A--TATaggtgta
gi|18 : TTT-A-TTTC-CCAGAAACCATT-A-CTCTGTATA-GAT-TA---AA--AG-AAAAAA-T--CTCTACGGC-AA--A-TA----------AAA-G-AAACG-----TGAC--A-G-CT-GCCAGGGA-TGGGGCC
gi|19 : atgtatacatTT-A-TATC-CCAGA--CCTAT-A-TC----ATA-A---CA---AA--TA-AGTAAC-G--C-TTA--AC-AA-TA-TA----------CTC-G-AA--------AGGC--A-G-CT-Gct
gi|2 : attttttttttcAAGTGAATT-GAACAATCGTAT-A-TTTTGCGA---AG-AAGCTACA-ATATC-CACC-TATGCTG-C-GCAGGAGTCCA-CACAAACACAA-ACT-AGAGTC--AAGATGCACCCTAG-GGCCCAG-TTAGCCGGGAGTACCGTTTTATCCCAGTAGG-TGA
gi|2 : ATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAAAA---AT-CTTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACATT-GTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATA-------GTAAAGTT----A--GATTTTAGTTTTTCATTTACAAATTTTT--CTGGAAAATA------CCCAACACCAA-TA------TGTTTCATT--TTTACTGAA---------TGAAGTGTAGCTGCTTATCAT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAGTTTTC--AAT-TTGTTTTGCAAggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaataaaatgtctaaattaaattatactggaaaaatctttagtccaatattcttgatttttaactagatgtttcaaaacattgtattcaaatatgtggcaacgtttcatatcttacatactgatgataaaaaagattgattttttaaattgaatgtatacataattgaatgtagtttacacttaaggaaattctaaattacattaacattttatgtttgtatattcctataaagcatacctaagttatagtaaagttagattttagtttttcatttacaaatttttctggaaaatacccaacaccaatatgtttcatttttactgaatgaagtgtagctgcttatcatttccatattattatcttacatatctcaccgtttatcaatgtttatagttttcaatttgttttgcaatgcgttgcattctctttattcattt
gi|20 : aagtgaattgaacaatcgtatattttgcgaagaagctacaatatccacctatgctgcgcaggagtccacacaaacacaaactagagtcaagatgcaccctagggcccagttagccgggagtaccgttttatcccagtaggtgaggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaAAAAGATTTAAGATGTTT-C-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-TTA--AC-tgcgttgcattctctttattcattt
gi|21 : tttaa--CAAAGGTAAATT-ATA-AATC-TAGGACTTTT-CGA---AG-A---CAT--ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-g
gi|22 : T-A-TTTC-CCAGA--CCTATCA-CT----ATA-A---CA---
gi|23 : AAAAGTTTTATGATGTTT-ATTTAC-CCAGC--TCTAC-A-GT----ACAGA---CA---AA--TG-AACGAtgtaacaaagtatcttatcattagagaaaaaatgtgga
gi|24 : ttcttaaaTGTAATGAATAAAACATGTAAAAGTAATATATAACATAT-TATATGATAAGCA--
gi|3 : TTCTT-CAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-ATCT----ATA-A----A---AA--TGAAACGAT-T--C-CTA--ACAAA-TA-TA----------ATC-AGAA--------TTGCCGA-G-CT-GCC-AGGACTGGGG-CTC--AC--------------------TAAG-CTCTCAA------ACT--AT---TAC--A--ACCCT--TT-AG-------TATAG-TTA-CCTATTACATC-ACG-C---GGATGGTACTACATCT-TC--TAGTTAAA----TAA-A-TA-TGG--TAG-TATA-TG-AATAATC-ACA--ATA-----GAATACAACT--AA--G--TATT-CCCGAATAAT-AC-ATTTATATGA---TTTAC-ATTAAGTGAT-TACACTGTT--A------ATAG-----A--CA-A-------------------GGT--AAGTATGTATTGAATAAAACATG-----GT--------AC-TATCTGTATGATA---A--CAAAGGTAAATTAATA-AATC-TACGT-TTTT-CGACGGAGAA---CATA-ATA-C-CACC-TATGCTGCCAGCA-GAGTTCA-CA-AAA-AC-A-ACTAAGA
gi|4 : GTTTTATG-T-TTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-T---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-TCCGAGGA-TGAGGCCTC-AAT--------------------TAAG-CTCC--A------ACT--CT---TAC--A--ATATT--GT-A--------CATAA-TTA-CCTATTACATC-ACG-C-A-GGAT-GT--TA----------------AA----T---A-TA-TGG--TAG-CATATTG-AATAATGCACA--ATA----TGTATACA--T--AG--G--CTAT-ACTAAGT--------------TGA---TTTAC-A-TAAGTTATATAGA--GACCTATATAACATAGG-TATA--CATAAGTAAAAAAAGATACAATTTGT--A--TATGTAATGAATAAAACACATCAAAGTCATATACA
gi|5 : ttctttttctttttggtttttttttgggggggggttgttcgtttTTTTTTTAATA-TTTTATAATATTTTA-TTTC-CCAGA--CCTATTA-CT----ATA-A---CA---AA--------GTA-T--C-TTA--TC-AT-TA-GA----------GAA-A-AAAAAAAGTGTGGA--AAG-CT-GCCAGGGA-TGGGGCCCT-GAC--------------------TAAG-CTCC--A------CCTAAATACATAT--A--ACA-------A--------TATAT-TTT-CCTAATACATCTATGAC-ATTGAT-ATG-TAAA--T-TC--TCGTT-CAGCATT---A-TCTTTGTCTAG-TA-ATTG---TAA---AAA--ATA---------ACA--T--TG--GAATTGTCAACAATTGAT-ACTACATATGTGAATGTTTATGA-TA--TTATtgta
gi|6 : cattacattatgtatatgatcgattatgtattatacatgacattgatttttttttttTTTTTTTATA---TATATCATGTTTTA-TTTCGCCAGAA-CCTAT-A-TC----ATA-A---CA---AA--TA-AGTGACAG--C-TTA--AC-AAATA-TA-----------TCGA-AA--------AGGC--A-A-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A-------CT--AT---TAC--A--A---T--GT-A--------AATAA-TG---CTAA-AAATC-ACG-C-A-GGAT-GTA-TA-----------------A----T---AATA-TGGT-TAA-TATATTG-AATAAT--ACA--TTA----T-AATACA--T--AG--A--TTAT-ACTGAGTAATGAATATTTAAGTAG---TTAACCA-TAAGTTA-ATATA---------------TAGG----A--CA-A-------------------TTT--A---ATGTA-TGA-TACA-CAT-----AAT-ATTTGTATTGTAC-AGTATGATGAGCA--
gi|7 : tttACGTTA-CATTT-ATGTTTC-TATAT-CCTATAAGCTATAC--AAGTTACATGTACATGTAAATTT----AAAGATTTTGTTCTTTCCTTTG-----TTTT--CTTGAAAAAAAAAAAACCCTCCAACAA-TATACATGTATTCCATTTATTTA-TGAAAAGACAGATTAAAATTT---TGCTTACAGTGT---CCCATA-TATTTGTAAT--ATT-AT-TACC-TCA---------TATA---------TCAAAATGTTTTTATAG-TCTC--ATT-TTG-TTTGCAAatttaagtaaaga
gi|8 : ATGTTT-A-CTAC-CCAAA--CCTAT-G-CT----ATA-G---CA---TA--TG-AACGAT-T--C-CTA--GC-AA-TA-TA----------CTC-A-AA--------TGAC--A-G-CC-GCCGAGGA-TGGAGCCTC-GAT--------------------TAAG-CTTC--A------ACT--AT---TAA--G--A---T--G-------------------A-CCTATTGCATC-ATA---A-G--T--TA-TAC------T--TAG-T-AA----T---ATTA-T-TCATAT-TAT-TTA-CATAAG--TC-------------ATATA--T--AG----------ACCTAACAAT-A--A---GTA--------TAC-G-CAAGTCAAATA-A--GAT--A------AAAAA-TAT---C--A-------------------TGT--A--T------TGAATAAATCATGTCAGAGTCATATATAtgcgtgcattcattttatatctttt
gi|9 : TC-GAC--------------------AAAGGCTCC--ATGCTTGACC--AT---TTCGGA--ACATTTTGT-ACTCTAACGTGTAG-TTA-CCTATTAC-----CG--------------TCCC--T-TTC-TAGTT-GA----TGATA-TA-TGGTA--G-TATATTG-AATAAT--ATATAACA----TGAATACA--C--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGT---TTTAC-A-TAAGTTATATATA--GACT-AT-----ATAGG-TATA--CA-A-------------------TGTACA--TATGTAATGAATAAATCATGACGAAGTCATATATAACATAT-TGTATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AATGTTTTACAGTGTCTCAGTTTGCTTGCAATGCGTGCATTCATTCTTTT
Alignments
lowQualScore : 11111111111 22222222 22222222222222222222 11111111 66666666666666666666666666 111 111 1111111 11111 1 4444444444444444444444444444444444444444444444444 11 1 111 2222222222 1 1111 22 1 333333 11 1 1 222 1 2222 222 11 11 1 1 1 1 2222 1 333333 11 1 1 222 1 1 11 1 1 1 11 11 1 1 33 4444444 4444 3333333 11 4444444 1 1 333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 22 11 1
lowQualScore : 33 7 2 1 2 55 9 2 5555 2 777 888 33 2 1 33 33 2 33 2 5 2 55555555555 2 2 88888888 2 33 5 2 3 3 55555555555555555555 3 44 888888 77 555 55555 888 44 3 55555555 2 55 55 3 55555 3 3 33333333333333333333333333 8 4 888 4 4 222 66 9999999 66 66 22222 5 0 5 55 555 888 0 5 0 0 3 5555555555555555555555555555555555555555555555555 77 77 5 5 999 7 9 8 3 0 11 8 8 8 6 8 444 5555555555 999 8 0 8 8 8 2 2 1111 3 00 3 333333 6 00 6 5 5 222 5 2222 111 66 88 22 1 1 1 1 1 1 5 5 5 1 5 1 3333 5 000000 88 5 5 111 5 5 1 88 5 5 5 88 88 0 7 7 7 3 3 7 44 3333333 6666 1 2222222 88 3333333 3 3 888888 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 00 88 1 3 7
lowQualScore : .. . . . . .. . . .... . ... ... .. . . .. .. . .. . . . ........... . . ........ . .. . . . . .................... . .. ...... .. ... ..... ... .. . ........ . .. .. . ..... . . .......................... . . ... . . ... .. ....... .. .. ..... . . . .. ... ... . . . . . ................................................. .. .. . . ... . . . . . .. . . . . . ... .......... ... . . . . . . . .... . .. . ...... . .. . . . ... . .... ... .. .. .. . . . . . . . . . . . . .... . ...... .. . . ... . . . .. . . . .. .. . . . . . . . .. ....... .... . ....... .. ....... . . ...... .......................................................................................................... .. .. .. . . .
lowQualScore : 22 1 4 0 4 66 4 4 0000 4 444 222 44 5 2 77 77 7 77 7 7 9 33333333333 9 9 66666666 9 99 7 9 1 1 00000000000000000000 1 22 888888 99 888 55555 777 66 3 44444444 4 77 22 3 44444 3 6 11111111111111111111111111 9 4 000 4 4 333 11 6666666 99 99 00000 0 2 0 66 444 888 0 0 1 4 6 3333333333333333333333333333333333333333333333333 99 99 1 4 999 9 6 0 2 2 00 0 0 0 0 0 000 4444444444 222 0 0 0 0 0 5 5 2222 2 77 3 333333 7 33 7 5 5 000 0 5555 000 55 00 00 0 0 0 0 0 0 5 5 5 0 0 0 5555 0 000000 55 5 5 000 0 5 0 55 5 0 0 55 55 7 3 3 3 3 3 3 00 3333333 7777 0 7777777 33 3333333 3 3 333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 00 33 0 3 3
consensus : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
Reference ( family-5148 ) : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
gi|1 : TTTTTTTAAAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAA-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-CAC--------------------AAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TACAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--TCTT--TAGTTAAA----T---A-TA-TGGTATAG-TATATTG-AATA----ACA--ATA----TGAATACA--T--AA--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TACGTTATATATA--GAC--A------GTAGG-TATA--CA-G-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACATAT-TGTATGACAAGTAAGCAAAGGTAAATT-ATA-AATC-TAGGA-CTTT-CGA---AG-A---CA-A-AGA-TGCACCGTAT-CTG-C-GCA-CAGTCCATCACAAACAT-A-ACTAGGCGTC-AAAGATG-ACCCTA--G---CAGCTTAGCCGTGGATATTGTTTTCT-CCAGAAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCTTGGAAGAGATATAATTTAGTCCATGATAAACATTAGCTGTAAATTGATGTTCACAAAACATTTATATATCAACTAT-TTGCA----TTCATATGCTCA-A----GACG--AAAAAAGA-TGA-TTTTTAGAT---AT-TATACATATAATGA--GTAGTTT-CAGCTGTAAGGAA--TCTAA--CAAATATAC-TTTTATGTTTGATAAAT-CT--TCAAGTCTACATAAGTGATA-------AGAAAGTTTTAAAGAGTGGTGTTTTTAAT---CGA-TTTTTTCCTGGAAAAAA-------CCCA-CAACAATTA------TGTTTCATT-------------------------TGTAAC-----ATTGT-TCTCTCTA-ATAATT----ATTGCTTAACATATCATCAGGTTTCTCGATTAGATGAGTTGTA--AATG--TTTATA---TTCAGAGTATTGTTTTGCAA
gi|10 : -A-TTTC-CCAGA--CCTAT-A-TT----ATA-A---CA---AA--TG-AGTGAC-G--C-TTA--AC-AA-TA-GA---------TTC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GACTAAATCCTCAGGGCCTCGACTAAG-CTCC--A------ATT--AT---TAC--A--A---T--GT-A--------TA-----TG-CCTAAAACATC-ACC-C-A-GGAT-GTA-TATA------------------------A-TA-TGG--TAA-TATATTG-AATAAT--ACA--
gi|11 : TTTTTGTGGAGGTTTTATAATATTTTA-TTTC-TCACA--CCTATCA-CT----ATA-A---CATGTAA--CA-AAATAA-TAAC-TTA--TC-AT-TA-TA---------GAA-A-AAAAATG---TGG-A--AAGCT-GCTAGGGG-TGGG-CCCC-GAC--------------------TGAG-CTCC--A------CCTA-AA---TAC-----ATATA--GCAA--------TATAATTTT-CCTATTGCATC-TCA-C-A-GGAT-taaggtacaatttacgtatgaaaacatatatttgtattgta
gi|12 : attcatgtacagcatgcatggtgtttggtaattttttatttattttTGTTT----TAC-CCAGA--C-TAC-A-CT----ATA-AGAACA---AAAATA-AATGAT-T--C-CTA--AC-AAGTAATA---------ATC-C-AA--------TGG-C--A-GCTTGCCGAGGA-TGGGGCCTC-GAC--------------------TAAA-CTCC--A------ACT--AT---TAC--ATTACATT--GT-A--------TATAG-TTATCCTATTACATC-ACG-CGA-GGAT-GTA-TACA--T-CTTGTAGTT-
gi|13 : ttggtgtttTTTTTCTTCAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------AGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-AAC--------------------TAAG-CTCC--A------ACT--AT---CAT--A--ACATT--GT-A--------TATAG-TAA-TATATTACATC-ACG-C-A-GGAT-GAA-TAt
gi|14 : ttTT-A-TTTC-CCA-A--CCTATCA-CT----ATA-A---CACGTAA--CA-AAGTAA-T--C-CTA--TC-AT-TA-GAGGGGGGGGGA---A-AAAGTG----TGGAA--A-ACT-GCCAGGGA-TGAAGCCACTGAC--------------------TAAG-CTCC--A------t
gi|15 : caatttttgttgttgagtttattaacatcATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AGTGAC-T--C-TTA--AC-AA-TA-TA---------TTC-C-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGACCTA-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACAAT--GT-A--------TA-----TG-CCAATTACATC-ACG-C-A-GGAT-GTA-cgaaacacttat
gi|16 : atTAAATA-ATA-AATC-TAGGAATTTT-CAA---AG-G----ACATATA-C-TATC-TATGCTGCC-GCA-GAGTCCA-CACATACAG-ACACTAAGAGTCAAAAGATT-ACCCTGGTG---CAGCTTATCC-CAGAGACCATTTTCTCCCAGTAG
gi|17 : -AA----T---A-TA-TGGTA--GCTATATTGCAATAAT--ACA--ACAATATTGAATACA--TTTAGACG--TTAT-AC-GAATAAT-ACTATT-ATATGA---TTTAC-A--AAGTTATATATA--GAC--A------ATAGGCTATAATCA-A-------------------TGT--A--TATaggtgta
gi|18 : TTT-A-TTTC-CCAGAAACCATT-A-CTCTGTATA-GAT-TA---AA--AG-AAAAAA-T--CTCTACGGC-AA--A-TA---------AAA-G-AAACG-----TGA-C--A-GCT-GCCAGGGA-TGGGGCC
gi|19 : atgtatacatTT-A-TATC-CCAGA--CCTAT-A-TC----ATA-A---CA---AA--TA-AGTAAC-G--C-TTA--AC-AA-TA-TA---------CTC-G-AA--------AGG-C--A-GCT-Gct
gi|2 : attttttttttcAAGTGAATT-GAACAATCGTAT-A-TTTTGCGA---AG-AAGCTACA-ATATC-CACC-TATGCTG-C-GCAGGAGTCCA-CACAAACACAA-ACT-AGAGTC--AAGATGCACCCTAG-GGCCCAG-TTAGCCGGGAGTACCGTTTTATCCCAGTAGG-TGA
gi|2 : ATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAAAA---AT-CTTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACATT-GTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATA-------GTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTT--CTGGAAAATA-------CCCAACACCAA-TA------TGTTTCATT--TTTACTGAA---------TGAAGTGTAGCTGCTTATCAT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAGTTTTC--AAT-TTGTTTTGCAAggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaataaaatgtctaaattaaattatactggaaaaatctttagtccaatattcttgatttttaactagatgtttcaaaacattgtattcaaatatgtggcaacgtttcatatcttacatactgatgataaaaaagattgattttttaaattgaatgtatacataattgaatgtagtttacacttaaggaaattctaaattacattaacattttatgtttgtatattcctataaagcatacctaagttatagtaaagttagattttagtttttcatttacaaatttttctggaaaatacccaacaccaatatgtttcatttttactgaatgaagtgtagctgcttatcatttccatattattatcttacatatctcaccgtttatcaatgtttatagttttcaatttgttttgcaatgcgttgcattctctttattcattt
gi|20 : aagtgaattgaacaatcgtatattttgcgaagaagctacaatatccacctatgctgcgcaggagtccacacaaacacaaactagagtcaagatgcaccctagggcccagttagccgggagtaccgttttatcccagtaggtgaggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaAAAAGATTTAAGATGTTT-C-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-TTA--AC-tgcgttgcattctctttattcattt
gi|21 : tttaa--CAAAGGTAAATT-ATA-AATC-TAGGACTTTT-CGA---AG-A---CAT--ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-g
gi|22 : T-A-TTTC-CCAGA--CCTATCA-CT----ATA-A---CA---
gi|23 : AAAAGTTTTATGATGTTT-ATTTAC-CCAGC--TCTAC-A-GT----ACAGA---CA---AA--TG-AACGAtgtaacaaagtatcttatcattagagaaaaaatgtgga
gi|24 : ttcttaaaTGTAATGAATAAAACATGTAAAAGTAATATATAACATAT-TATATGATAAGCA--
gi|3 : TTCTT-CAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-ATCT----ATA-A----A---AA--TGAAACGAT-T--C-CTA--ACAAA-TA-TA---------ATC-AGAA--------TTG-CCGA-GCT-GCC-AGGACTGGGG-CTC--AC--------------------TAAG-CTCTCAA------ACT--AT---TAC--A--ACCCT--TT-AG-------TATAG-TTA-CCTATTACATC-ACG-C---GGATGGTACTACATCT-TC--TAGTTAAA----TAA-A-TA-TGG--TAG-TATA-TG-AATAATC-ACA--ATA-----GAATACAACT--AA--G--TATT-CCCGAATAAT-AC-ATTTATATGA---TTTAC-ATTAAGTGAT-TACACTGTT--A------ATAG-----A--CA-A-------------------GGT--AAGTATGTATTGAATAAAACATG-----GT--------AC-TATCTGTATGATA---A--CAAAGGTAAATTAATA-AATC-TACGT-TTTT-CGACGGAGAA---CATA-ATA-C-CACC-TATGCTGCCAGCA-GAGTTCA-CA-AAA-AC-A-ACTAAGA
gi|4 : GTTTTATG-T-TTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-T---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-TCCGAGGA-TGAGGCCTC-AAT--------------------TAAG-CTCC--A------ACT--CT---TAC--A--ATATT--GT-A--------CATAA-TTA-CCTATTACATC-ACG-C-A-GGAT-GT--TA----------------AA----T---A-TA-TGG--TAG-CATATTG-AATAATGCACA--ATA----TGTATACA--T--AG--G--CTAT-ACTAAGT--------------TGA---TTTAC-A-TAAGTTATATAGA--GACCTATATAACATAGG-TATA--CATAAGTAAAAAAAGATACAATTTGT--A--TATGTAATGAATAAAACACATCAAAGTCATATACA
gi|5 : ttctttttctttttggtttttttttgggggggggttgttcgtttTTTTTTTAATA-TTTTATAATATTTTA-TTTC-CCAGA--CCTATTA-CT----ATA-A---CA---AA--------GTA-T--C-TTA--TC-AT-TA-GA---------GAA-A-AAAAAAAGTGTGG-A--AAGCT-GCCAGGGA-TGGGGCCCT-GAC--------------------TAAG-CTCC--A------CCTAAATACATAT--A--ACA-------A--------TATAT-TTT-CCTAATACATCTATGAC-ATTGAT-ATG-TAAA--T-TC--TCGTT-CAGCATT---A-TCTTTGTCTAG-TA-ATTG---TAA---AAA--ATA---------ACA--T--TG--GAATTGTCAACAATTGAT-ACTACATATGTGAATGTTTATGA-TA--TTATtgta
gi|6 : cattacattatgtatatgatcgattatgtattatacatgacattgatttttttttttTTTTTTTATA---TATATCATGTTTTA-TTTCGCCAGAA-CCTAT-A-TC----ATA-A---CA---AA--TA-AGTGACAG--C-TTA--AC-AAATA-TA----------TCGA-AA--------AGG-C--A-ACT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A-------CT--AT---TAC--A--A---T--GT-A--------AATAA-TG---CTAA-AAATC-ACG-C-A-GGAT-GTA-TA-----------------A----T---AATA-TGGT-TAA-TATATTG-AATAAT--ACA--TTA----T-AATACA--T--AG--A--TTAT-ACTGAGTAATGAATATTTAAGTAG---TTAACCA-TAAGTTA-ATATA---------------TAGG----A--CA-A-------------------TTT--A---ATGTA-TGA-TACA-CAT-----AAT-ATTTGTATTGTAC-AGTATGATGAGCA--
gi|7 : tttACGTTA-CATTT-ATGTTTC-TATAT-CCTATAAGCTATAC--AAGTTACATGTACATGTAAATTTAA--AGATTTTGTTCTTTCCTTTG-----TTTT--CTTGAAAAAAAAAAAACCCTC-CAACAA-TATACATGTATTCCATTTATTTA-TGAAAAGACAGATTAAAATTT---TGCTTACAGTGT---CCCATA-TATTTGTAAT--ATT-AT-TACC-TCA---------TATA---------TCAAAATGTTTTTATAG-TCTC--ATT-TTG-TTTGCAAatttaagtaaaga
gi|8 : ATGTTT-A-CTAC-CCAAA--CCTAT-G-CT----ATA-G---CA---TA--TG-AACGAT-T--C-CTA--GC-AA-TA-TA---------CTC-A-AA--------TGA-C--A-GCC-GCCGAGGA-TGGAGCCTC-GAT--------------------TAAG-CTTC--A------ACT--AT---TAA--G--A---T--G-------------------A-CCTATTGCATC-ATA---A-G--T--TA-TAC------T--TAG-T-AA----T---ATTA-T-TCATAT-TAT-TTA-CATAAG--TC-------------ATATA--T--AG----------ACCTAACAAT-A--A---GTA--------TAC-G-CAAGTCAAATA-A--GAT--A------AAAAA-TAT---C--A-------------------TGT--A--T------TGAATAAATCATGTCAGAGTCATATATAtgcgtgcattcattttatatctttt
gi|9 : TC-GAC--------------------AAAGGCTCC--ATGCTTGACC--AT---TTCGGA--ACATTTTGT-ACTCTAACGTGTAG-TTA-CCTATTAC-----CG--------------TCCC--T-TTC-TAGTT-GA----TGATA-TA-TGGTA--G-TATATTG-AATAAT--ATATAACA----TGAATACA--C--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGT---TTTAC-A-TAAGTTATATATA--GACT-AT-----ATAGG-TATA--CA-A-------------------TGTACA--TATGTAATGAATAAATCATGACGAAGTCATATATAACATAT-TGTATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AATGTTTTACAGTGTCTCAGTTTGCTTGCAATGCGTGCATTCATTCTTTT
Alignments
lowQualScore : 11111111111 22222222 22222222222222222222 11111111 66666666666666666666666666 111 111 1111111 11111 1 4444444444444444444444444444444444444444444444444 11 1 111 2222222222 1 1111 22 1 333333 11 1 1 222 1 2222 222 11 11 1 1 1 1 2222 1 333333 11 1 1 222 1 1 11 1 1 1 11 11 1 1 33 4444444 4444 3333333 11 4444444 1 1 333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 22 11 1
lowQualScore : 33 7 2 1 2 55 9 2 5555 2 777 888 33 2 1 33 33 2 33 2 5 2 55555555555 2 2 88888888 2 33 5 2 3 3 55555555555555555555 3 44 888888 77 555 55555 888 44 3 55555555 2 55 55 3 55555 3 3 33333333333333333333333333 8 4 888 4 4 222 66 9999999 66 66 22222 5 0 5 55 555 888 0 5 0 0 3 5555555555555555555555555555555555555555555555555 77 77 5 5 999 7 9 8 3 0 11 8 8 8 6 8 444 5555555555 999 8 0 8 8 8 2 2 1111 3 00 3 333333 6 00 6 5 5 222 5 2222 111 66 88 22 1 1 1 1 1 1 5 5 5 1 5 1 3333 5 000000 88 5 5 111 5 5 1 88 5 5 5 88 88 0 7 7 7 3 3 7 44 3333333 6666 1 2222222 88 3333333 3 3 888888 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 00 88 1 3 7
lowQualScore : .. . . . . .. . . .... . ... ... .. . . .. .. . .. . . . ........... . . ........ . .. . . . . .................... . .. ...... .. ... ..... ... .. . ........ . .. .. . ..... . . .......................... . . ... . . ... .. ....... .. .. ..... . . . .. ... ... . . . . . ................................................. .. .. . . ... . . . . . .. . . . . . ... .......... ... . . . . . . . .... . .. . ...... . .. . . . ... . .... ... .. .. .. . . . . . . . . . . . . .... . ...... .. . . ... . . . .. . . . .. .. . . . . . . . .. ....... .... . ....... .. ....... . . ...... .......................................................................................................... .. .. .. . . .
lowQualScore : 22 1 4 0 4 66 4 4 0000 4 444 222 44 5 2 77 77 7 77 7 7 9 33333333333 9 9 66666666 9 99 7 9 1 1 00000000000000000000 1 22 888888 99 888 55555 777 66 3 44444444 4 77 22 3 44444 3 6 11111111111111111111111111 9 4 000 4 4 333 11 6666666 99 99 00000 0 2 0 66 444 888 0 0 1 4 6 3333333333333333333333333333333333333333333333333 99 99 1 4 999 9 6 0 2 2 00 0 0 0 0 0 000 4444444444 222 0 0 0 0 0 5 5 2222 2 77 3 333333 7 33 7 5 5 000 0 5555 000 55 00 00 0 0 0 0 0 0 5 5 5 0 0 0 5555 0 000000 55 5 5 000 0 5 0 55 5 0 0 55 55 7 3 3 3 3 3 3 00 3333333 7777 0 7777777 33 3333333 3 3 333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 00 33 0 3 3
consensus : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
Reference ( family-5148 ) : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
gi|1 : TTTTTTTAAAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAA-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-CAC--------------------AAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TACAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--TCTT--TAGTTAAA----T---A-TA-TGGTATAG-TATATTG-AATA----ACA--ATA----TGAATACA--T--AA--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TACGTTATATATA--GAC--A------GTAGG-TATA--CA-G-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACATAT-TGTATGACAAGTAAGCAAAGGTAAATT-ATA-AATC-TAGGA-CTTT-CGA---AG-A---CA-A-AGA-TGCACCGTAT-CTG-C-GCA-CAGTCCATCACAAACAT-A-ACTAGGCGTC-AAAGATG-ACCCTA--G---CAGCTTAGCCGTGGATATTGTTTTCT-CCAGAAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCTTGGAAGAGATATAATTTAGTCCATGATAAACATTAGCTGTAAATTGATGTTCACAAAACATTTATATATCAACTAT-TTGCA----TTCATATGCTCA-A----GACG--AAAAAAGA-TGA-TTTTTAGAT---AT-TATACATATAATGA--GTAGTTT-CAGCTGTAAGGAA--TCTAA--CAAATATAC-TTTTATGTTTGATAAAT-CT--TCAAGTCTACATAAGTGATA-------AGAAAGTTTTAAAGAGTGGTGTTTTTAAT---CGA-TTTTTTCCTGGAAAAAA-------CCCA-CAACAATTA------TGTTTCATT-------------------------TGTAAC-----ATTGT-TCTCTCTA-ATAATT----ATTGCTTAACATATCATCAGGTTTCTCGATTAGATGAGTTGTA--AATG--TTTATA---TTCAGAGTATTGTTTTGCAA
gi|10 : -A-TTTC-CCAGA--CCTAT-A-TT----ATA-A---CA---AA--TG-AGTGAC-G--C-TTA--AC-AA-TA-GA---------TTC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GACTAAATCCTCAGGGCCTCGACTAAG-CTCC--A------ATT--AT---TAC--A--A---T--GT-A--------TA-----TG-CCTAAAACATC-ACC-C-A-GGAT-GTA-TATA------------------------A-TA-TGG--TAA-TATATTG-AATAAT--ACA--
gi|11 : TTTTTGTGGAGGTTTTATAATATTTTA-TTTC-TCACA--CCTATCA-CT----ATA-A---CATGTAA--CA-AAATAA-TAAC-TTA--TC-AT-TA-TA---------GAA-A-AAAAATG---TGG-A--AAGCT-GCTAGGGG-TGGG-CCCC-GAC--------------------TGAG-CTCC--A------CCTA-AA---TAC-----ATATA--GCAA--------TATAATTTT-CCTATTGCATC-TCA-C-A-GGAT-taaggtacaatttacgtatgaaaacatatatttgtattgta
gi|12 : attcatgtacagcatgcatggtgtttggtaattttttatttattttTGTTT----TAC-CCAGA--C-TAC-A-CT----ATA-AGAACA---AAAATA-AATGAT-T--C-CTA--AC-AAGTAATA---------ATC-C-AA--------TGG-C--A-GCTTGCCGAGGA-TGGGGCCTC-GAC--------------------TAAA-CTCC--A------ACT--AT---TAC--ATTACATT--GT-A--------TATAG-TTATCCTATTACATC-ACG-CGA-GGAT-GTA-TACA--T-CTTGTAGTT-
gi|13 : ttggtgtttTTTTTCTTCAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------AGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-AAC--------------------TAAG-CTCC--A------ACT--AT---CAT--A--ACATT--GT-A--------TATAG-TAA-TATATTACATC-ACG-C-A-GGAT-GAA-TAt
gi|14 : ttTT-A-TTTC-CCA-A--CCTATCA-CT----ATA-A---CACGTAA--CA-AAGTAA-T--C-CTA--TC-AT-TA-GAGGGGGGGGGA---A-AAAGTG----TGGAA--A-ACT-GCCAGGGA-TGAAGCCACTGAC--------------------TAAG-CTCC--A------t
gi|15 : caatttttgttgttgagtttattaacatcATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AGTGAC-T--C-TTA--AC-AA-TA-TA---------TTC-C-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGACCTA-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACAAT--GT-A--------TA-----TG-CCAATTACATC-ACG-C-A-GGAT-GTA-cgaaacacttat
gi|16 : atTAAATA-ATA-AATC-TAGGAATTTT-CAA---AG-G----ACATATA-C-TATC-TATGCTGCC-GCA-GAGTCCA-CACATACAG-ACACTAAGAGTCAAAAGATT-ACCCTGGTG---CAGCTTATCC-CAGAGACCATTTTCTCCCAGTAG
gi|17 : -AA----T---A-TA-TGGTA--GCTATATTGCAATAAT--ACA--ACAATATTGAATACA--TTTAGACG--TTAT-AC-GAATAAT-ACTATT-ATATGA---TTTAC-A--AAGTTATATATA--GAC--A------ATAGGCTATAATCA-A-------------------TGT--A--TATaggtgta
gi|18 : TTT-A-TTTC-CCAGAAACCATT-A-CTCTGTATA-GAT-TA---AA--AG-AAAAAA-T--CTCTACGGC-AA--A-TA---------AAA-G-AAACG-----TGA-C--A-GCT-GCCAGGGA-TGGGGCC
gi|19 : atgtatacatTT-A-TATC-CCAGA--CCTAT-A-TC----ATA-A---CA---AA--TA-AGTAAC-G--C-TTA--AC-AA-TA-TA---------CTC-G-AA--------AGG-C--A-GCT-Gct
gi|2 : attttttttttcAAGTGAATT-GAACAATCGTAT-A-TTTTGCGA---AG-AAGCTACA-ATATC-CACC-TATGCTG-C-GCAGGAGTCCA-CACAAACACAA-ACT-AGAGTC--AAGATGCACCCTAG-GGCCCAG-TTAGCCGGGAGTACCGTTTTATCCCAGTAGG-TGA
gi|2 : ATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAAAA---AT-CTTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACATT-GTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATA-------GTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTT--CTGGAAAATA-------CCCAACACCAA-TA------TGTTTCATT--TTTACTGAA---------TGAAGTGTAGCTGCTTATCAT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAGTTTTC--AAT-TTGTTTTGCAAggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaataaaatgtctaaattaaattatactggaaaaatctttagtccaatattcttgatttttaactagatgtttcaaaacattgtattcaaatatgtggcaacgtttcatatcttacatactgatgataaaaaagattgattttttaaattgaatgtatacataattgaatgtagtttacacttaaggaaattctaaattacattaacattttatgtttgtatattcctataaagcatacctaagttatagtaaagttagattttagtttttcatttacaaatttttctggaaaatacccaacaccaatatgtttcatttttactgaatgaagtgtagctgcttatcatttccatattattatcttacatatctcaccgtttatcaatgtttatagttttcaatttgttttgcaatgcgttgcattctctttattcattt
gi|20 : aagtgaattgaacaatcgtatattttgcgaagaagctacaatatccacctatgctgcgcaggagtccacacaaacacaaactagagtcaagatgcaccctagggcccagttagccgggagtaccgttttatcccagtaggtgaggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaAAAAGATTTAAGATGTTT-C-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-TTA--AC-tgcgttgcattctctttattcattt
gi|21 : tttaa--CAAAGGTAAATT-ATA-AATC-TAGGACTTTT-CGA---AG-A---CAT--ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-g
gi|22 : T-A-TTTC-CCAGA--CCTATCA-CT----ATA-A---CA---
gi|23 : AAAAGTTTTATGATGTTT-ATTTAC-CCAGC--TCTAC-A-GT----ACAGA---CA---AA--TG-AACGAtgtaacaaagtatcttatcattagagaaaaaatgtgga
gi|24 : ttcttaaaTGTAATGAATAAAACATGTAAAAGTAATATATAACATAT-TATATGATAAGCA--
gi|3 : TTCTT-CAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-ATCT----ATA-A----A---AA--TGAAACGAT-T--C-CTA--ACAAA-TA-TA---------ATC-AGAA--------TTG-CCGA-GCT-GCC-AGGACTGGGG-CTC--AC--------------------TAAG-CTCTCAA------ACT--AT---TAC--A--ACCCT--TT-AG-------TATAG-TTA-CCTATTACATC-ACG-C---GGATGGTACTACATCT-TC--TAGTTAAA----TAA-A-TA-TGG--TAG-TATA-TG-AATAATC-ACA--ATA-----GAATACAACT--AA--G--TATT-CCCGAATAAT-AC-ATTTATATGA---TTTAC-ATTAAGTGAT-TACACTGTT--A------ATAG-----A--CA-A-------------------GGT--AAGTATGTATTGAATAAAACATG-----GT--------AC-TATCTGTATGATA---A--CAAAGGTAAATTAATA-AATC-TACGT-TTTT-CGACGGAGAA---CATA-ATA-C-CACC-TATGCTGCCAGCA-GAGTTCA-CA-AAA-AC-A-ACTAAGA
gi|4 : GTTTTATG-T-TTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-T---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-TCCGAGGA-TGAGGCCTC-AAT--------------------TAAG-CTCC--A------ACT--CT---TAC--A--ATATT--GT-A--------CATAA-TTA-CCTATTACATC-ACG-C-A-GGAT-GT--TA----------------AA----T---A-TA-TGG--TAG-CATATTG-AATAATGCACA--ATA----TGTATACA--T--AG--G--CTAT-ACTAAGT--------------TGA---TTTAC-A-TAAGTTATATAGA--GACCTATATAACATAGG-TATA--CATAAGTAAAAAAAGATACAATTTGT--A--TATGTAATGAATAAAACACATCAAAGTCATATACA
gi|5 : ttctttttctttttggtttttttttgggggggggttgttcgtttTTTTTTTAATA-TTTTATAATATTTTA-TTTC-CCAGA--CCTATTA-CT----ATA-A---CA---AA--------GTA-T--C-TTA--TC-AT-TA-GA---------GAA-A-AAAAAAAGTGTGG-A--AAGCT-GCCAGGGA-TGGGGCCCT-GAC--------------------TAAG-CTCC--A------CCTAAATACATAT--A--ACA-------A--------TATAT-TTT-CCTAATACATCTATGAC-ATTGAT-ATG-TAAA--T-TC--TCGTT-CAGCATT---A-TCTTTGTCTAG-TA-ATTG---TAA---AAA--ATA---------ACA--T--TG--GAATTGTCAACAATTGAT-ACTACATATGTGAATGTTTATGA-TA--TTATtgta
gi|6 : cattacattatgtatatgatcgattatgtattatacatgacattgatttttttttttTTTTTTTATA---TATATCATGTTTTA-TTTCGCCAGAA-CCTAT-A-TC----ATA-A---CA---AA--TA-AGTGACAG--C-TTA--AC-AAATA-TA----------TCGA-AA--------AGG-C--A-ACT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A-------CT--AT---TAC--A--A---T--GT-A--------AATAA-TG---CTAA-AAATC-ACG-C-A-GGAT-GTA-TA-----------------A----T---AATA-TGGT-TAA-TATATTG-AATAAT--ACA--TTA----T-AATACA--T--AG--A--TTAT-ACTGAGTAATGAATATTTAAGTAG---TTAACCA-TAAGTTA-ATATA---------------TAGG----A--CA-A-------------------TTT--A---ATGTA-TGA-TACA-CAT-----AAT-ATTTGTATTGTAC-AGTATGATGAGCA--
gi|7 : tttACGTTA-CATTT-ATGTTTC-TATAT-CCTATAAGCTATAC--AAGTTACATGTACATGTAAATTTAA--AGATTTTGTTCTTTCCTTTG-----TTTT--CTTGAAAAAAAAAAAACCCTC-CAACAA-TATACATGTATTCCATTTATTTA-TGAAAAGACAGATTAAAATTT---TGCTTACAGTGT---CCCATA-TATTTGTAAT--ATT-AT-TACC-TCA---------TATA---------TCAAAATGTTTTTATAG-TCTC--ATT-TTG-TTTGCAAatttaagtaaaga
gi|8 : ATGTTT-A-CTAC-CCAAA--CCTAT-G-CT----ATA-G---CA---TA--TG-AACGAT-T--C-CTA--GC-AA-TA-TA---------CTC-A-AA--------TGA-C--A-GCC-GCCGAGGA-TGGAGCCTC-GAT--------------------TAAG-CTTC--A------ACT--AT---TAA--G--A---T--G-------------------A-CCTATTGCATC-ATA---A-G--T--TA-TAC------T--TAG-T-AA----T---ATTA-T-TCATAT-TAT-TTA-CATAAG--TC-------------ATATA--T--AG----------ACCTAACAAT-A--A---GTA--------TAC-G-CAAGTCAAATA-A--GAT--A------AAAAA-TAT---C--A-------------------TGT--A--T------TGAATAAATCATGTCAGAGTCATATATAtgcgtgcattcattttatatctttt
gi|9 : TC-GAC--------------------AAAGGCTCC--ATGCTTGACC--AT---TTCGGA--ACATTTTGT-ACTCTAACGTGTAG-TTA-CCTATTAC-----CG--------------TCCC--T-TTC-TAGTT-GA----TGATA-TA-TGGTA--G-TATATTG-AATAAT--ATATAACA----TGAATACA--C--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGT---TTTAC-A-TAAGTTATATATA--GACT-AT-----ATAGG-TATA--CA-A-------------------TGTACA--TATGTAATGAATAAATCATGACGAAGTCATATATAACATAT-TGTATGA
blockSeqs : GG T T T G AA C T CTGT G GAA TGT AA A T CA AA T CG A G A GGGGGGGGGA G G AAAAAGTG A CG A T C T TAAATCCTCAGGGCCTCGAC G CA TGCTTG AA ACA ATT TAT TT A CTCTAACG T AT AT T ACAT G C CATCTTCTAGTTAAATAA A T TCT C C TGC TA ATATTGA AC TT ACG C G CT TTT ATG G T T GACCTATATAACATAGGTATACATAAGTAAAAAAAGATACAATT AC AG A A TAA A A C A . A C G A G CGG AAGCTACA TC . C A G . C C GAC A AA C GGGCC C GG C . . A . . . C . TT T G T T C A . . . A G G ACGT . CATACT AT T T TGA G . T AT A . . AT AT A A T . T T CT TGTACAT AA A TTACAAA . AAAAAAC A . TACATG TATTTATGAAAAGACAGATTAAAATTTTGCTTACAGTGTCCCATATATTTGTAATATTATTACCTCATATATCAA TT GT . A . T
blockSeqs : TC T . T . A C . . . AT CGT . . A C . . . . A . TT . . AAATG . . A . . . . . . . A . GGA CAT . . G T G G . CGA . . AATTCTCGTTCAGCATT T . CAT . . TC . TGT . . GAA . . CT CAT . C . C GACAATAGGCTATAATCAA . . T A TCA C G . A . . . . C . . AACATA C . C . . . C C CAA A . . GTG . C C . A . . . T . . . G TTG . . . . . TTTACTGAATGAAGTGTAGCTGCTTATCATTTCCATATTATTATCTTACATATCTCACCGTTTATC . G . T . .
blockSeqs : AA T . A . . C . . . . . . . T A . . . . . . GA . . AGTG . . . . . . . . . . . . A CAT . . . T G T . CA . . CCTTTCTAGTTGATGAT . . TA . . T . TGA . . G . . AT TTT . . . G GACTATATAGGTATACAA . . A A TCA C A . . . . . . . . . GACAT C . C . . . . . CA .
blockSeqs : AA . . A . . T . . . . . . . C T . . . . . . AT . . ACG . . . . . . . . . . . . A CAA . . . T G A . CA . . CTTAGTAAT . . TT . . T . GA . . G . . CT TTT . . . T CTGTTAATAGACAA . . A T ACG C . . . . . . . . . ACAT C . . . . .
blockSeqs : AA . . T . . . . . . . . . . G T . . . . . . AT . . . . . . . . . . . . . . . A CCC . . . T A G . CA . . AAT . . TA . . T . TA . . A . . C TT . . . T GATAAAAAATATCA . . . T . .
blockSeqs : AT . . A . . . . . . . . . . T A . . . . . . TT . . . . . . . . . . . . . . . A TAT . . . T T A . CA . . TA . . T . . G . . . . G . . . . . . . . TAGGACAA . . . . . .
blockSeqs : C . . T . . . . . . . . . . A C . . . . . . AA . . . . . . . . . . . . . . . A CAT . . . T A A . CA . . AT . . T . . T . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . T A . . . . . . CT . . . . . . . . . . . . . . . A CA . . . T G T . CA . . . . T . . . .
blockSeqs : . . A . . . . . . . . . . C C . . . . . . AT . . . . . . . . . . . . . . . A . . . . . . A . C . .
blockSeqs : . . T . . . . . . . . . . C T . . . . . . AT . . . . . . . . . . . . . . . G . . . . . . A . A . .
blockSeqs : . . A . . . . . . . . . . C T . . . . . . GA . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . C T . . . . . . CT . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . T A . . . . . . T . . . . . . .
blockSeqs : . . T . . . . . . . . . . C T . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . A . . . . . . . .
blockSeqCons : CTTAGTAAT***************** T** T** TGA**** GACTATATAGGTATACAA******************************* ** AACAT***** C**
originalCons : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACA--T-TT--TAGTT-AA----T---A-TA-TGGTATAG-TATATTG-AATAAT--ACA--ATA----TGAATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATA--GAC--A------ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AG-A---CACA-ATA-C-CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
finalCons : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA---------ATC-A-AA--------TGG-C--A-GCT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTACATC-ACG-C-A-GGAT-GTA-TACTTAGTAAT-----------------A-TA-TGGT--AG-TATATTG-AATAAT--ACA--ATATGA----ATACA--T--AG--G--TTAT-ACCGAATAAT-ACTATTTATATGA---TTTAC-A-TAAGTTATATATAGACTATATAGGTATACAA-------------------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AGAACAT-----ATAC--CACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AATGTTTTACAGTGTCTCAGTTTGCTTGCAATGCGTGCATTCATTCTTTT
Alignments
lowQualScore : 111111111111 22222222 22222222222222222222 11111111 44444444444444444444 111 11 1111 111 11111 1111111 22222222222 111 1111 3333333333 555555555555555555555 1111 11 1 111 1111111 111 1111 22 1 44444 11 1 1 222 1 2222 222 11 11 1 1 1 1 2222 1 333333 11 1 1 222 1 1 11 1 1 1 11 11 1 1 33 4444444 4444 3333333 11 4444444 1 1 333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 22 11 1
lowQualScore : 33 7 2 1 2 55 9 2 5555 2 777 888 33 2 1 33 33 2 33 2 5 2 666666666666 2 2 77777777 33 5 2 2 3 3 55555555555555555555 3 44 888888 77 555 55555 888 44 3 55555555 2 55 3 3 3 99999999999999999999 0 66 5 5 5 9999 5 222 11 2222 000 44444 77 1 8888888 33333333333 3 1 000 5 1111 1 4444444444 99 99 111111111111111111111 99999 4444 5 9 8 3 0 11 8 8 8 6 8 444 9999999 111 3 3 8 8 8 8 2 2 1111 3 00 3 33333 6 00 6 5 5 222 5 2222 111 66 88 22 1 1 1 1 1 1 5 5 5 1 5 1 3333 5 000000 88 5 5 111 5 5 1 88 5 5 5 88 88 0 7 7 7 3 3 7 44 3333333 6666 1 2222222 88 3333333 3 3 888888 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 00 88 1 3 7
lowQualScore : .. . . . . .. . . .... . ... ... .. . . .. .. . .. . . . ............ . . ........ .. . . . . . .................... . .. ...... .. ... ..... ... .. . ........ . .. . . . .................... . .. . . . .... . ... .. .... ... ..... .. . ....... ........... . . ... . .... . .......... .. .. ..................... ..... .... . . . . . .. . . . . . ... ....... ... . . . . . . . . .... . .. . ..... . .. . . . ... . .... ... .. .. .. . . . . . . . . . . . . .... . ...... .. . . ... . . . .. . . . .. .. . . . . . . . .. ....... .... . ....... .. ....... . . ...... .......................................................................................................... .. .. .. . . .
lowQualScore : 22 1 4 0 4 66 4 4 0000 4 444 222 44 5 2 77 77 7 77 7 7 9 444444444444 9 9 55555555 99 7 9 9 1 1 00000000000000000000 1 22 888888 99 888 55555 777 66 3 44444444 4 77 3 3 6 33333333333333333333 1 99 0 0 0 0000 0 000 99 1111 000 66666 99 7 1111111 00000000000 6 4 000 7 6666 4 8888888888 88 22 888888888888888888888 33333 7777 2 6 0 2 2 00 0 0 0 0 0 000 8888888 888 8 2 0 0 0 0 5 5 2222 2 77 3 33333 7 33 7 5 5 000 0 5555 000 55 00 00 0 0 0 0 0 0 5 5 5 0 0 0 5555 0 000000 55 5 5 000 0 5 0 55 5 0 0 55 55 7 3 3 3 3 3 3 00 3333333 7777 0 7777777 33 3333333 3 3 333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 00 33 0 3 3
consensus : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTAC-ATCACGC-AGGATGTATAC----T--------TAGT--AAT--AT-ATG-G-TA--G-TATATTG-AATAAT--ACA--ATA----TGAAT---ACA--T--AG--GTTATAC------CGAATAA---------T-ACTATTTAT---ATGATTTA-CA-T--AAGTTATATATAGA-CTAT-----ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AGA-A----CA-T-ATACCACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
Reference ( family-5148 ) : TTTTTTTANAAGTTTTATGATGTTT-A-TTNC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAN-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TATAG-TTA-CCTATTAC-ATCACGC-AGGATGTATAC----T--------TAGT--AAT--AT-ATG-G-TA--G-TATATTG-AATAAT--ACA--ATA----TGAAT---ACA--T--AG--GTTATAC------CGAATAA---------T-ACTATTTAT---ATGATTTA-CA-T--AAGTTATATATAGA-CTAT-----ATAGG-TATA--CA-A-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACGTAT-TGTATGATAAGCA--CAAAGGTAAATT-ATA-AATC-TAGGA-TTTT-CGA---AGA-A----CA-T-ATACCACC-TATGCTGCC-GCA-GAGTCCA-CACAAACAC-A-ACTAAGAGTC-AAAGATG-ACCCTAG-G---CAGCTTAGCCGCGGATACCGTTTTCTCCCAGTAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCCTGGAAGAGATATANTTTAGTCCATGATANNCNTNANCTNTAANTNGATGTTCACAAAACATTTGTATATCAANTATGTNGCAACGTTTCATATGCTCACATACTGACGATAAAAAAGATTGATTTTTTAGATTGAATGTATACATATANTGAATGTAGTTTACAGCTGTAAGGAAATTCTAAATCACGTTAACATTTTATGTTTG-TATAT-CCTATAAAGTATAC-TAAGTTATA-------GTAAAGTT----AGATTTTNGTTTTTCATTTGCGA-TTTTT--CTGGAAAAAA-------CCCA-CAACAA-TA------TGTTTCATT--TTTA-TGAA---------TGAAGTGTAGCTGCTTATCGT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAG-TTTC--ANT-TTGTTTTGCAA
gi|1 : TTTTTTTAAAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAA-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-CAC--------------------AAAG-CTCC--A------ACT--AT---TAC--A--ACATT--GT-A--------TACAG-TTA-CCTATTAC-ATCACGC-AGGATGTATACATCTT--------TAGTTAAAT--AT-ATG-G-TATAG-TATATTG-AATAA----CA--ATA----TGAAT---ACA--T--AA--GTTATAC------CGAATAA---------T-ACTATTTAT---ATGATTTA-CA-T--ACGTTATATATAGA-C-A------GTAGG-TATA--CA-G-------------------TGT--A--TATGTAATGAATAAAACATGTCGAAGTCATATATAACATAT-TGTATGACAAGTAAGCAAAGGTAAATT-ATA-AATC-TAGGA-CTTT-CGA---AGACA----AA-G-ATGC-ACCGTAT-CTGC--GCA-CAGTCCATCACAAACAT-A-ACTAGGCGTC-AAAGATG-ACCCTAG-----CAGCTTAGCCGTGGATATTGTTTTCTCC-AGAAGGATGATTTATCCCAACAATAATAACTAAGAATCAAAAGTAAATACAAAAAATACAAAGATAATATCGAAGTGGTTGGTGTAATAGTATATCTCTTCAATTATAACTAAGTTTTATCAAAATTCTCTTATATAAATGTCTATATATTCGAGTTGTAGCCCTTGGAAGAGATATAATTTAGTCCATGATAAACATTAGCTGTAAATTGATGTTCACAAAACATTTATATATCAACTAT-TTGCA----TTCATATGCTCA-A----GACG--AAAAAAGA-TGA-TTTTTAGAT---AT-TATACATATAATGA--GTAGTTT-CAGCTGTAAGGAA--TCTAA--CAAATATAC-TTTTATGTTTGATAAAT-CT--TCAAGTCTACATAAGTGATA-------AGAAAGTTTTAAAGAGTGGTGTTTTTAAT---CGA-TTTTTTCCTGGAAAAAA-------CCCA-CAACAATTA------TGTTTCATT-------------------------TGTAAC-----ATTGT-TCTCTCTA-ATAATT----ATTGCTTAACATATCATCAGGTTTCTCGATTAGATGAGTTGTA--AATG--TTTATA---TTCAGAGTATTGTTTTGCAA
gi|10 : -A-TTTC-CCAGA--CCTAT-A-TT----ATA-A---CA---AA--TG-AGTGAC-G--C-TTA--AC-AA-TA-GA----------TTC-A-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-GACTAAATCCTCAGGGCCTCGACTAAG-CTCC--A------ATT--AT---TAC--A--A---T--GT-A--------TA-----TG-CCTAAAAC-ATCACCC-AGGATGTATA--------------TA---------AT-ATG-G-TA--A-TATATTG-AATAAT--ACA--
gi|11 : TTTTTGTGGAGGTTTTATAATATTTTA-TTTC-TCACA--CCTATCA-CT----ATA-A---CATGTAA--CA-AAATAA-TAAC-TTA--TC-AT-TA-TA----------GAA-A-AAAAATG---TGGA--AAG-CT-GCTAGGGG-TGGG-CCCC-GAC--------------------TGAG-CTCC--A------CCTA-AA---TAC-----ATATA--GCAA--------TATAATTTT-CCTATTGC-ATCTCAC-AGGATtaaggtacaatttacgtatgaaaacatatatttgtattgta
gi|12 : attcatgtacagcatgcatggtgtttggtaattttttatttattttTGTTT----TAC-CCAGA--C-TAC-A-CT----ATA-AGAACA---AAAATA-AATGAT-T--C-CTA--AC-AAGTAATA----------ATC-C-AA--------TGGC--A-G-CTTGCCGAGGA-TGGGGCCTC-GAC--------------------TAAA-CTCC--A------ACT--AT---TAC--ATTACATT--GT-A--------TATAG-TTATCCTATTAC-ATCACGCGAGGATGTATAC----
gi|13 : ttggtgtttTTTTTCTTCAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------AGGC--A-G-CT-GCCGAGGA-TGGGGCCTC-AAC--------------------TAAG-CTCC--A------ACT--AT---CAT--A--ACATT--GT-A--------TATAG-TAA-TATATTAC-ATCACGC-AGGATGAATAatcttgtagttt
gi|14 : ttTT-A-TTTC-CCA-A--CCTATCA-CT----ATA-A---CACGTAA--CA-AAGTAA-T--C-CTA--TC-AT-TA-GAGGGGGGGGGAA---A-AAGTG-----TGGA--A-AACT-GCCAGGGA-TGAAGCCACTGAC--------------------TAAG-CTCC--A------t
gi|15 : caatttttgttgttgagtttattaacatcATGTTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AGTGAC-T--C-TTA--AC-AA-TA-TA----------TTC-C-AA--------TGGC--A-G-CT-GCCGAGGA-TGGGACCTA-GAC--------------------TAAG-CTCC--A------ACT--AT---TAC--A--ACAAT--GT-A--------TA-----TG-CCAATTAC-ATCACGC-AGGATGTAcgaaacacttat
gi|16 : atTAAATA-ATA-AATC-TAGGAATTTT-CAA---AGG-A----CA-T-ATACTATC-TATGCTGCC-GCA-GAGTCCA-CACATACAG-ACACTAAGAGTCAAAAGATT-ACCCTGGTG---CAGCTTATCC-CAGAGACCATTTTCTCCCAGTAG
gi|17 : --AAT--AT-ATG-G-TA--GCTATATTGCAATAAT--ACA--ACAATATTGAAT---ACA--TTTAGACGTTATAC-------GAATAA---------T-ACTATT-AT---ATGATTTA-CA----AAGTTATATATAGA-C-A------ATAGGCTATAATCA-A-------------------TGT--A--TATaggtgta
gi|18 : TTT-A-TTTC-CCAGAAACCATT-A-CTCTGTATA-GAT-TA---AA--AG-AAAAAA-T--CTCTACGGC-AA--A-TA----------AAA-G-AAACG-----TGAC--A-G-CT-GCCAGGGA-TGGGGCC
gi|19 : atgtatacatTT-A-TATC-CCAGA--CCTAT-A-TC----ATA-A---CA---AA--TA-AGTAAC-G--C-TTA--AC-AA-TA-TA----------CTC-G-AA--------AGGC--A-G-CT-Gct
gi|2 : attttttttttcAAGTGAATT-GAACAATCGTAT-A-TTTTGCGA---AGA-AGCTACAAT-AT-CCACC-TATGCTG-C-GCAGGAGTCCA-CACAAACACAA-ACT-AGAGTC--AAGATGCACCCTAG-GGCCCAG-TTAGCCGGGAGTACCGTTTTATCCCAGTAGG-TGA
gi|2 : ATA-AAATGTCTA-A-ATT-AAATTATA----CTGGAAAA---AT-CTTTAGTCCA--ATATTCTTGATTTTTAACTAGATGTTT-CAAAACATT-GTAT-TCAAATATGTGGCAACGTTTCATAT-CTTACATACTGATGATAAAAAAGATTGATTTTTTAAATTGAATGTATACATA-ATTGAATGTAGTTTACA-CT-TAAGGAAATTCTAAATTACATTAACATTTTATGTTTG-TATATTCCTATAAAGCATACCTAAGTTATA-------GTAAAGTT----AGATTTTAGTTTTTCATTTACAAATTTTT--CTGGAAAATA-------CCCAACACCAA-TA------TGTTTCATT--TTTACTGAA---------TGAAGTGTAGCTGCTTATCAT-T---TCCATATTATT----AT--CTT-ACATATC-TCA------CCGTTTA---------TC--AATG--TTTATAGTTTTC--AAT-TTGTTTTGCAAggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaataaaatgtctaaattaaattatactggaaaaatctttagtccaatattcttgatttttaactagatgtttcaaaacattgtattcaaatatgtggcaacgtttcatatcttacatactgatgataaaaaagattgattttttaaattgaatgtatacataattgaatgtagtttacacttaaggaaattctaaattacattaacattttatgtttgtatattcctataaagcatacctaagttatagtaaagttagattttagtttttcatttacaaatttttctggaaaatacccaacaccaatatgtttcatttttactgaatgaagtgtagctgcttatcatttccatattattatcttacatatctcaccgtttatcaatgtttatagttttcaatttgttttgcaatgcgttgcattctctttattcattt
gi|20 : aagtgaattgaacaatcgtatattttgcgaagaagctacaatatccacctatgctgcgcaggagtccacacaaacacaaactagagtcaagatgcaccctagggcccagttagccgggagtaccgttttatcccagtaggtgaggtggattctttcacaaaattatacataattaacatatagataatgaaacatgggagtagggtacattatacgggtaaAAAAGATTTAAGATGTTT-C-TTAC-CCAGA--CCTAT-A-CT----ATA-A---CA---AA--TG-AACGAT-T--C-TTA--AC-tgcgttgcattctctttattcattt
gi|21 : tttaa--CAAAGGTAAATT-ATA-AATC-TAGGACTTTT-CGA---AG--A----CA-T-ATACCACC-TATGCTGCC-GCA-GAGTCCA-g
gi|22 : T-A-TTTC-CCAGA--CCTATCA-CT----ATA-A---CA---
gi|23 : AAAAGTTTTATGATGTTT-ATTTAC-CCAGC--TCTAC-A-GT----ACAGA---CA---AA--TG-AACGAtgtaacaaagtatcttatcattagagaaaaaatgtgga
gi|24 : ttcttaaaTGTAATGAATAAAACATGTAAAAGTAATATATAACATAT-TATATGATAAGCA--
gi|3 : TTCTT-CAAGTTTTATGATGTTT-A-TTAC-CCAGA--CCTAC-ATCT----ATA-A----A---AA--TGAAACGAT-T--C-CTA--ACAAA-TA-TA----------ATC-AGAA--------TTGCCGA-G-CT-GCC-AGGACTGGGG-CTC--AC--------------------TAAG-CTCTCAA------ACT--AT---TAC--A--ACCCT--TT-AG-------TATAG-TTA-CCTATTAC-ATCACGC--GGATG-GTAC----TACATCTTCTAGTTAAATAAAT-ATG-G-TA--G-TATA-TG-AATAATC-ACA--ATA-----GAAT---ACAACT--AA--GTATTCC------CGAATAA---------T-AC-ATTTAT---ATGATTTA-CATT--AAGTGAT---TACA-CTGTTA---ATAG-----A--CA-A-------------------GGT--AAGTATGTATTGAATAAAACATG-----GT--------AC-TATCTGTATGATA---A--CAAAGGTAAATTAATA-AATC-TACGT-TTTT-CGACGGAGA-A----CA-TAATACCACC-TATGCTGCCAGCA-GAGTTCA-CA-AAA-AC-A-ACTAAGA
gi|4 : GTTTTATG-T-TTT-A-TTAC-CCAGA--CCTAT-A-CT----ATA-T---CA---AA--TG-AACGAT-T--C-CTA--AC-AA-TA-TA----------ATC-A-AA--------TGGC--A-G-CT-TCCGAGGA-TGAGGCCTC-AAT--------------------TAAG-CTCC--A------ACT--CT---TAC--A--ATATT--GT-A--------CATAA-TTA-CCTATTAC-ATCACGC-AGGATGT-TA--------------------AAT--AT-ATG-G-TA--G-CATATTG-AATAATGCACA--ATA----TGTAT---ACA--T--AG--GCTATAC------TAAGT--------------------------TGATTTA-CA-T--AAGTTATATAGAGACCTATATAACATAGG-TATA--CATAAGTAAAAAAAGATACAATTTGT--A--TATGTAATGAATAAAACACATCAAAGTCATATACA
gi|5 : ttctttttctttttggtttttttttgggggggggttgttcgtttTTTTTTTAATA-TTTTATAATATTTTA-TTTC-CCAGA--CCTATTA-CT----ATA-A---CA---AA--------GTA-T--C-TTA--TC-AT-TA-GA----------GAA-A-AAAAAAAGTGTGGA--AAG-CT-GCCAGGGA-TGGGGCCCT-GAC--------------------TAAG-CTCC--A------CCTAAATACATAT--A--ACA-------A--------TATAT-TTT-CCTAATAC-ATCtgta
gi|6 : cattacattatgtatatgatcgattatgtattatacatgacattgatttttttttttTTTTTTTATA---TATATCATGTTTTA-TTTCGCCAGAA-CCTAT-A-TC----ATA-A---CA---AA--TA-AGTGACAG--C-TTA--AC-AAATA-TA-----------TCGA-AA--------AGGC--A-A-CT-GCCGAGGA-TGGGGCCTC-GAC--------------------TAAG-CTCC---------ACT--AT---TAC--A--A---T--GT-A--------AATAA-T---GCTA-AAA-ATCACGC-AGGATGTA----------------TAAT--A----AT-ATG-GTTA--A-TATATTG-AATAAT--ACA--TTA----T-AAT---ACA--T--AG--ATTATAC------TGAGTAA---------TGAATATTTAA---GTAGTTAACCA-T--AAGTTA-A--------TAT-----ATAGG----A--CA-A-------------------TTT--A---ATGT-ATG-AT-ACACAT----AA--TATTTGTATTGTAC-AGTATGATGAGCA--tatgacattgatatgtaaattctcgttcagcattatctttgtctagtaattgtaaaaaataacattggaattgtcaacaattgatactacatatgtgaatgtttatgatattat
gi|7 : tttACGTTA-CATTT-ATGTTTC-TATAT-CCTATAAGCTATAC--AAGTTACATGTACATGTAAATTTAA--AGATTTTGTTCTTTCCTTTG-----TTTT--CTTGAAAAAAAAAAAACCCTC-CAACAA-TATACATGTATTCCATTTATTTA-TGAAAAGACAGATTAAAATTT---TGCTTACAGTGT---CCCATA-TATTTGTAAT--ATT-AT-TACC-TCA---------TATA---------TCAAAATGTTTTTATAG-TCTC--ATT-TTG-TTTGCAAatttaagtaaaga
gi|8 : ATGTTT-A-CTAC-CCAAA--CCTAT-G-CT----ATA-G---CA---TA--TG-AACGAT-T--C-CTA--GC-AA-TA-TA----------CTC-A-AA--------TGAC--A-G-CC-GCCGAGGA-TGGAGCCTC-GAT--------------------TAAG-CTTC--A------ACT--AT---TAA--G--A---T--G-------------------A-CCTATTGC-ATCATA--AG--T-TATAC----T--------TAGT--AAT--ATTATTCA-TA--T-TAT-TTA-CATAAG--TCAT-ATA----TAGACCTAACAA-T--AA--GT-ATACGCAAGTCAAATAAGATAAAAAAT-ATCATGTATTGAATAAATCA-TG-TCAGAGTCATATATAtgcgtgcattcattttatatctttt
gi|9 : TC-GAC--------------------AAAGGCTCC--ATGCTTGACC--AT---TTCGGA--ACATTTTGT-ACTCTAACGTGTAG-TTA-CCTATTACCGTCCC-------TTTCTAG----T--------TGAT--GAT--AT-ATG-G-TA--G-TATATTG-AATAAT--ATATAACA----TGAAT---ACA--C--AG--GTTATAC------CGAATAA---------T-ACTATTTAT---ATGTTTTA-CA-T--AAGTTATATATAGA-CTAT-----ATAGG-TATA--CA-A-------------------TGTACA--TATGTAATGAATAAATCATGACGAAGTCATATATAACATAT-TGTATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AATGTTTTACAGTGTCTCAGTTTGCTTGCAATGCGTGCATTCATTCTTTT