lowQualScore : 1111111111111111111111111111111 11111111111111111111111111111111 222222222222222222222
lowQualScore : 11 333333333333 222 2 444 2222222222222 4 111111 1 1 111 1 111 22 11 111 2 1 444444444 11 6666666 111111 8888888888888888888888888888888 11 22222222 11 11 1 11 1 1 1 11 2222 2222 1 111 22 11 11 11 1 88888888888888888888888888888 11 555555555555555555555 333333333333 111 22222222 111 1 1 11111111 77777777777777777777777777777777 1 2 1 1 1 22222 33 11111 111 2 3333333333333 111 1 11 33 22222 1 000000000000000000000 1 2222 2
lowQualScore : 66 444444444444 555 4 4 555 0 777 1 4 777 4 4 4 88 4 55 0 3 4 4 4 55 222 8888 4 4 4 4 4 8 6666666666666 4 66 4 66 4 4 88 0 222222 7 4 6 7 000 66 3 8 777 66 00 66 1 99 111 9 0 3 2 77 999999999 77 22 2222222 8 8 77 77 77 5 99 6 999999 1111111111111111111111111111111 11 8 8 8 8 22222222 0 0 66 11 0 8 11 6 0 4 6 33 3 5 0 0 33 2222 6666 0 0 8 0 0 444 11 1 11 11 8 6 8 1 8 8 8 8 11 6 8 8 0 0 33333333333333333333333333333 66 777777777777777777777 8 333333333333 0 0 444 99999999 444 0 0 0 66666666 66 11111111111111111111111111111111 5 0 0 0 0 55555 44 8 00000 0 0 444 2 8 4444444444444 444 0 33 11 44444 0 000000000000000000000 0 3 8888 6 6 3
lowQualScore : .. ............ ... . . ... . ... . . ... . . . .. . .. . . . . . .. ... .... . . . . . . ............. . .. . .. . . .. . ...... . . . . ... .. . . ... .. .. .. . .. ... . . . . .. ......... .. .. ....... . . .. .. .. . .. . ...... ............................... .. . . . . ........ . . .. .. . . .. . . . . .. . . . . .. .... .... . . . . . ... .. . .. .. . . . . . . . . .. . . . . . ............................. .. ..................... . ............ . . ... ........ ... . . . ........ .. ................................ . . . . . ..... .. . ..... . . ... . . ............. ... . .. .. ..... . ..................... . . .... . . .
lowQualScore : 44 000000000000 777 0 0 777 8 000 2 0 000 0 0 0 44 1 55 7 2 0 0 0 55 000 5555 0 0 4 4 4 3 2222222222222 4 11 4 11 4 4 77 0 888888 8 4 7 8 000 11 3 9 555 99 11 99 0 22 777 0 0 3 5 99 111111111 99 77 7777777 0 0 11 99 99 7 22 7 222222 9999999999999999999999999999999 00 0 0 0 0 00000000 8 8 44 00 8 0 00 0 0 0 5 88 2 0 0 0 88 5555 5555 0 8 0 6 6 000 00 4 00 00 0 0 0 4 0 0 0 0 00 0 0 0 6 6 88888888888888888888888888888 22 222222222222222222222 0 000000000000 8 8 000 00000000 000 8 0 0 55555555 88 88888888888888888888888888888888 0 0 0 0 0 00000 00 0 66666 8 8 888 2 5 8888888888888 888 0 88 22 88888 0 000000000000000000000 0 2 3333 7 7 3
consensus : NCAGGCTGT-CAAG-T----------CTCCT-A-T-A-TTTTCCT-TATTTTT---CAG-GG---AGTTCCTT-TATTTT-CCTA-TATTTNGGCAAAAT--CCTCCTATATTTCC-TATA-TT-TT--GGCAATAAAGC--TG----TCG-TTTT-CAGTTCT-TTGATTTGA-TTG-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCA-T-GACATACTT-ACATCATT------TAGTAAGTTTTTA-ACACCATTTT-AGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTT-GATATGGTTTCCCAA--TTTCAGGTTTTCACT----CATGTT--AAAACACTT-TAACAGT-GAT---T-CCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCAG------------ATGTATAAAC-GATTAT-AGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCCAAGTT-AGATCAAAC--TGAT-ATNAAAAGGAAGAGAAAAGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACTGT--TCAA-GTGATTTTTTATT-A-G-AGTAAATGATGTAAAA-GCATTAATTACTTTG---ATATTCAAGTCAAT--TTTATAG--T-GTAGATAC-TGTAAAT-GAA-GCC-AT-CATTC--AATTGCAA-GAT-TTTAATCAATTT----AAAAAA------------------AAAAGCTTCTACGNAT----TTTTT------A-A-TGCAGAAA----G-------TTTACAAGT---TTA--------AAAT---ACAATGATGA-G-ACAGTTT-CGAAT-AAATTNTTTT--AAATACG----G------------------AAACTCAAACAAAAGGATTGGTTTG-GATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-CTCTTA--CTGAAAAG-AAAATGACAAGAACTCT-CCTTAAGAC-----------GACAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
Reference ( gi|1 ) : ACAGGCTGG-CAAG-G----------TTCCT-A-T-A-TTTTCCT-TATTTTT---CAG-GG---A-TTCCTT-TATTTT-CCTA-CATTTTGGCAAAAT--CCTCCTATATTTCC-TATA-TT-TT--GGCAATAAAG---TG----TCG-TTTT-CAGTTCT-TTGATTTGA-TTG-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCA-T-GACATACTT-GCAT-ATT------TAG-AAGTTTTTA-ACCCCA-TTT-AAACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTTGCCC-TTT-GATATGGTTTCCCAA--TTTCAGGTTT----T----CATGTT--AAAACACTT-TAACAGT-A-----T-CCAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCAG------------ATG---------------AGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCCAAGTT-AGATCAAAC--TAAT-ATTAAAAGGAAGAAAAAAGATTAAGCCCAGTTAAT--AAACAGTAA-TAA-ACTGT--TCAA-GTAATTTTTTATT-A-G-AGTAAATGATGTAAAA-GCATTAATTACTTTG---ATAGCCAAGTCAAT--TTTATAG--T-GTAGATAC-TGTAAAT-GAA-GCC-AT-CATTC--AATTGTAA-GAT-TTTAATCAATTT---AAAAAAA------------------AAAAAATTCTACGTA-----TTTTT------A-A-TGCAAAAA----G-------TTTACAAGT---TTA--------AAAT---ACAATGATGA-G-ATAATTT-CAAAT-AAATTATTTT--AAAT--------------------------AAACTCCAACAAAAGGATTGG-TTG-GATAT-TTA-AAT-----TACAAT-AACTGGTCAG-GGATCAAAGATT--AATTATAAGTTACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAT-AAAATGACAATAACTCT-CTTTAAGACAGGCCCCGGGAGACAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATATTA
gi|5 : CAGGCTGT-CAAG-TCACCTATATTTTCCT-A-T-A-TTTTTCC-TATTTTTACTCTG-GG---AGTTCCTT-TAATTT-TCTA-TATTTTGGCAAAATTCCCTCCTATATTTCT-AATATTT-TT--GGCAATAAAGGCTTGGACATCGTTTTT-CAGTTCT-TTGATTTGATTTG-TTCAAAAATCATGC---------G---GAAA-TAAAA--GTCA-ATCCAAAGTTTAATCATT-AACATACTT-ACATCATT------TAG-AAAGTTTTA------------GAACCA-----TA---------ACATTT---ATGAACAACTAATATT--GGTAT----TAAA--T---AACATGCAGCAA--TAATAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTT-GATATGGTTTCCCAA--TTTTAGGTTTTCACT----CATGTT--AAAACACTT-AAACAGT-GAT---T-CCAT-TTTCTGACTCATA-GTCT--TTCT--CAAGA--AG-TA------ATAAGAGGTATTCAA------------ATGTATAAAACTGATTATAGT--TGAAAAA-C-ACTACA---TGTAATTGG-AAAAATCA--TCCAAGTT-AGATCAAAC--TGAT-ATTAAAAGGAAGAAAAAAGATTAAGCCTAGTTAATAAAAACATTAA-TAA-ACTGC--TCAA-GT-ATTTTT
gi|7 : gCAGGCTGTTCAAG-T----------CTCCT-A-TTA-TTTTCCG--ATTTTT---CTG-AG---AGTTCCTT-TATTTTTCCTAATATTGGGGAAAAAT--CCTCTTATATTTCCATATA-TT-TT--GGCAATAAAGCT-TG----TCA-TTTTTCAGTTCT-TTGATTT-A-TTG-TTCATAATTAATGC---------G---AAAA-AAAAAAGGTCAGAATCAA---TTAACCA-TTGACATACTTTACATCATT------TAG-AAGTTTTTA-ACACCA-TTTTAGACCACT--TTATA-TTTTATACATTT---ATGAACAACCAATATTATGGTATTCAATGAAACTTACAGCATGCAGCAAATTATTAAAACAATATGAGTGAAAAAT-GCTTTTTGCCC-TTTTGATATGG-TTCCCAATTTTTCAGGTTTCAC-T----CATGTTAAAAAACACTT-TAACAGT-
gi|13 : cCAGGCTGT-CAAG-T----------CTCCT-A-T-A-TTTTCCT--ATTTTT---CAG-AG---AGTTCCTT-TATTTT-CCTA-TATTTGGGCAAAAT--CCTCCTATATTTCC-TATA-TT-TT--GGCAATAAAGC--TG----TCG-TTTT-CAGTTCT-TTGATTTGA-TTG-TTAAAAAATAATGC---------GA--AAAA-AAGAA--GTCA-AATCAAG--TTAACCA-T-TACATACTT-ACATCATT------TAG-AAGTTTTTA-ACCCCATTTT-AGACCACTAAATATA-TTTCATACATga
gi|20 : gCAGGCTGT-CAAGCA----------TCTCT-AAT-AATTTTCC---ATTT-----CAGTGG---AGTTCCTT-TATTTT-CTTA-TATT--GGCAAAAT--TCCTCTATATTTCC-TATA-TTGTTGAGGAAATAAAAGC-TG----TCG-TTTT-C
gi|12 : AGGCTGG-CAAG-G----------TTCCTGA-T-A--TTTCCT-TATTTTT---CAG-GG---A-TTCCTT-TATTTT-CCTA-CATTTTGGCAAAAT--CCTCCTATATTTCC-TATA-TT-TT--GGCAATAAAG---TG----TCG-TTTT-CAGTTCT-TTGATTTGA-TTG-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCA-T-GACATACTT-GCATCATT------TAG-AAGTTTTTA-ACCCCA-TTT-AAACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATA-T--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTTtc
gi|9 : AGGCTGT-CAAG-T----------CTCCT-A-T-A-TTTTCC--TATTTTT---CAG-GG---AGTTCCTT-TATTTT-CCTA-TATTTGGACAAAAT--CCTCCTATATTTCC-TATA-TT-TT--GGCAATAAAGC--TG----TCA-TTTT-CAGTTCT-TTGATTAGA-TTG-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCA-T-TACATACTT-ACATCATTTTAATATAGTAAGCTTTTA-ACACCATTTT-AGACCACT--TTATA-TT-----------------ACAACCAATATT--GGTAT-CAATGAAC-TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGC-TTTTGCCCTTTT-GATATGGTTTCCCAA--TTTCAGGTTTTCACT----CATGTT--AAAACACTT-
gi|11 : GCTGT-CAAG-T----------CTCCT-A-T-A-TTTTCC--TATTTTT---CTG-GG---A-GTTCTTATATTTT-CCTA-TATTTGGGCAAATA--CCTCTAAT-TTTCC-TATA-TT-TT--GGCAATAACGC--TG----TCA-TTTT-TAGTTTT-TTGATTTG--TTGCTTCATAAATAATGCAAAAAAAAAA---AAAA-AAGAA--GTCA-AA-CAAG--TTAACCA-T-GACATACTT-ACATCATT------TAG-AAGTTTTTACAACCCA-TTT--------------TA-ATT-ACACATTT---ATGAACAACCAATATT--GGTAT-CAATGAAC-TTCCAGCATGCAGCAA--TATTAAAACA---TGAGTGAA-AATAACTTTTTGCCCTTTT-GATATAGTTTACCAA--TTTCAGGTTT----T----CAac
gi|14 : -CAGG-GA---------TTCCT-T-T-A-TTTTCCTATATTT-------G-GGCAAA-ATCC--------T-CCTA-TATTTTGGCAActca
gi|15 : atcttcctattttt-G----------TTCCT-T-T-A-TTTTCCTATATTTTtaaagctgtcgttttcagttctttgatttcattgttcataaataatgcgaaaaaaaaagaagtcaaatcaagttaatcatgacatacttacatcatttagtaagtttttaacaccatttaaccactttatattttatacatttatgaacaaccaatattggtatca
gi|14 : tcaggga-A-TCTTCCT--ATTTTT---CAG-GG---A-TTCCTT-TATTTT-CCTA-TATTTGGGCAAAAT--CC---------TCC-TATA-TT-TT--GGCAATAAAGC--TG----TCG-TTTT-CAGTTCT-TTGATTTCA-TTG-TTCATAAATAATGC---------GAAAAAAA-AAGAA--GTCA-AATCAAG--TTAATCA-T-GACATACTT-ACATCATT------TAGTAAGTTTTTA-ACACCA-TTT--AACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATATT--GGTAT-ggcaaaatcctctatcctatatttggaataaagctgtcattttcagttctttgattagatttttcataaataatgcgaaaaaaagaagttaaatcaagttaaccacgacatacttacatcatttagtaagtttttaacaccattttagaccactttatattttatacatttatgatgaacaaccaatattggcatcaatgaa
gi|15 : T---CAG-GG---AGTTCCTT-TATTTT-CCTA-TATTTTGGCAAAAT--CCTC---TAT--CC-TATA-TT-T---GG-AATAAAGC--TG----TCA-TTTT-CAGTTCT-TTGATTAGA-TTT-TTCATAAATAATGC---------GA--AAAA-AAGAA--GTTA-AATCAAG--TTAACCA-C-GACATACTT-ACATCATT------TAGTAAGTTTTTA-ACACCATTTT-AGACCACT--TTATATTTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--ca
gi|17 : TTTGGCAAAAT--CCTCCTATAT--CC-TATA-TT-TT--GGCAATAAAGC--TG----TCA-TTTT-CAGTTTTCTTGATTAGA-TTT-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCA-C-GACATACTT-ACATCATT------TAGTAAGTTTTTA-ACACCATTTT-AGACCACT--TTATT-TTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--
gi|16 : --TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCT-TTT-GATATGGTTT--CAA--TTTCAGGTTTTCACT----CATGTT--AAAACACc
gi|22 : AGCTTTTTGCCC-TTTTGATATGTTTTCCCAA--TTTCAGGTGCAC--T----CATGTT--AAAACACTT-TAGAAGT-GATCATT-CCAT-TTTCTGACTCGTA-GTCT--TTCT--C-Agtatagatagtttattgtcatgtaaattgttttgatattgaaataaattttaaatataaggggaggtggaggccaatttttgttaagagtatgactaatcattcattttacatcttatatt
gi|19 : ataaA--TTTGAGGTTT----TTACTCATGTT--AAAACACTTGTAACAGTGA-----TACTAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TGATGTCTATGAGATGTATTAAG------------GT
gi|8 : aataaagctctttg----T----CATGTT--AAAACAATT--AACAGT-GAT---T-CCAT-TTCCTGACTCA---GTCT--TT-T--C-AGA--AA-TA------ATAAGAGGTATTCAG------------ATGTATAAACAGATTAT-AGT--TC-AAAA-C-ACTA-A---T----TTGGAAAAA-TCA--TCCAAGTTTAGATCAAAC--TGAT-ATAAAAAGAAAGAAAAAAGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACTGT--TCAA-GTGATTTTTTTTTTATG-AGTAAATGATGTAAAA-GCATTAATTACTTTG---ATATTCAAGTCAAT--TTTATAA--T-GTAGATAC-TGTAAAT-GAT-GCC-AT-CATTC--AATTGCAA-GAT-TTTCATCAATT-------AGAA------------------GAAAGCTTCTACAAAT----TTTTT------T-A-TGAAGAAA----G-------TTTACAAGT---TTA--------AAAT---ACAATGAattggatgtata
gi|2 : ttcacAACAGT-GAT---T-CCATATTTCTGACTCAT--GTCT--GTCTATC-AGA--AAATA------ATAAGAGGT-TTCA-------------ATGTATAAACTGATTAT-AGT--TG-AAAAAC-AATA-A---T----T-GGAAAAAATCAAATCCAAGTT-AGATCAAACACTGATCATTAAAAGGAAGAGACTAAATTAAGCC-AGTTAAT--AAACATTAAGTAAGACTGT--TGAATGTAATTTTTTAT--A-G-AGTAAATGATATAAAA-GCATTCATTACTTGG---ATATTCAAGTCAATTATTTATAG--T-GTAGATACTTGTAAAT-GAA-GCC-AT-CATTC--AATTGCAA-GATCTTTAAGC-ATTT------AAGA------------------AAAGGCTTCTACATATTTAGTTTTT------A-A-TGCAAGAACAATG-------TTTACAAGT---TTA--------AAAT---ACAATGATGA-GAATAGTTTCCAAGTAAAATTATTTT--AAATACGAGGGAATGACATTTTTTTTTCGAAAACTCAAACAAAAGTTTAGGTTTG-GATAT-TTATAATTCATGTACTTTAAAATGGTCAG-GA--CAAAGATT---ATCA-AAGTGACCAAGG----TAATCCA-TATTGCCTCTTACTCTGAAAG--AAAATGATAAGGA--CT-CCTTAAGAC---C-----------GGTA-GAAGGAG--TTTG----GAA-TGGT-AAGAT-TTA
gi|3 : TCCTGACTCGTACGTCTAATTCT--C-AGAGCAA-TA------ATAAGGCGTACTCTGCACTCTGATTTAATAC--------------AGTAGTG-AAAA-CCACTG-AAATT----TTGGAAAAAATCA--TCT-AGTT-AGATCAAAC--tgatgggatttgtgacacagttaccaatattcttgcta
gi|6 : TCTGA-TCATA-ATCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCAG------------ATGTAAA-----------AGA--TG-AAAA-C-ACTA-A---T----TTGGAAAA--TCA--TCCAAGTT-AGATCAAAC--TGCT-ATAAAATGGAAGAGAAAAGATTACGCCCAGTTAAC--AA-CATTAA-TAA-ATTGTCGTCAA------TTTTTAT--A-G-AGTAAATTATGTAAAA-GCATTAATCACTGTG---ATATTCAAGACAAT--TTTATAG--TGGTAGA-AC-TAAAAAA-GAG-GCC-AT-CATTC--AATTGCAA-GAT-TTTAATC-ATTT---TTTAAAA------------------AAAAGCTTCTAC---------------------A-TGCAGAAA----G-------TTTAC-AGT---TTA--------AAAT---ACAATGAGGA-G-ATAATTT-CGAAT-GAATTA-TTT--AAATAGA-----------------------AAACTCAAACAAAAGGATTGGTTTG-GATAT-TTA-AAT-----TACTTT-TACTGGTAAG-A---C-AAGA-T--AATTAccctccgctatagacttaacgcgtaacaaacataaataaattcgttgaccttcaccatgctcgtcacttttaatagcggtaaatgatgaaagcattaattcctgtagaaatattcaagacaatttaatagaatgtagaaactaaaaattgaatgcccatacatttcaaattgcaacgattttaatcaattttttaaaaaaggctcaacatctaccatgcagaaagtttaacgaagttttaaatacaatgaggagataatttcaaatgaattatctctcacaaatcagacaggataatgacagttttttcttttggaaaaaactcaaacaaaaggattgattgagatatattaaattactttaactgtcaatggatcaaagatagattaaaagtggccacttattcttactgaaaagaaaaatgacaagacctctctcagacaggtagaagcagttttagagaagaactggtcaagatcttacgatttttgatttgcgaccacaagttacagatcttgct
gi|3 : TTTTAAT-A-GCGGTAAATGATG--AAA-GCATTAATTCCTGTAGAAATATTCAAGACAAT--TTAATAGAAT-GTAGAAAC-TAAAAATTGAATGCCCATACATTTCAAATTGCAACGAT-TTTAATCAATTTTTTAAAAAAGGCTCAACATCTACCATGCAGAAAGTTTAACGAA-----GTTTT------A-AATACAATGA----GGAGATAATTT-CAAATGAATTATCTCTCACAAATCAGACAG-GATAATG-ACAGTTT-T--------TTCTTTTGGAAA---------------------------AAACTCAAACAAAAGGATTGA-TTGAGATATATTA-AAT-----TACTTT-AACTG-TCAATGGATCAAAGATA--GATTAAAAGT------GG--------CCA-C-TTA-TTCTTA--CTGAAAAGAAAAATGACAAGACCTCT-CTC----------------AGACAGGTA-GAAGCAGTTTTAGAGAAGAACTGGTCAAGATCTTA
gi|10 : tcctgactcgtacgtctaattctcagagcaataataaggcgtactctgcactctgatttaatacagtagtgaaaaccactgaaattttggaaaaaatcatctagttagatcaaacccctccgctatagacttaacgcgtaacaaacataaataaattcgttgaccttcaccatgctcgtcacGTAAATGTTGTAAAAAGCATCCATTACTTTG---ATATTCAAGTCAGT--TTTATAG--T-GTAGATAC-TGTAAAT-GAA-GC--AT-CATTC--AACTGCAA-CAA-TTTAAGCAATT-----AAAAAA------------------AAAAGCTTCTACTTA-----TTTTTTTTTTTATA-TGCAGAAT----G-------TTTACAAGT---TTA--------AAAT---ACAATGATGA-G-ACAATTG-CAAAT-AAATTTTTTT-----TTTTTCTTG------------------AAACTCAAACAAAAGGATTGG-TTG-GATAT-TTG-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGA-C-AGG----TAATCCATT-TTG-CTCTTA--CTGAAAAG-AAAATGATAAGAA--CT-CCTTAAGAC----------------GTAGGAAGCAGTTTTTcgatttttgatttgcgaccacaagttacagatcttgct
gi|18 : T-AACTGGTCAG-GGATCAAAGATTTTAATAA-AAGTGACC-AGGAATTTAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTTA---------------GACAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): ATCAGGGATTCAAATGATATATATAACTGGATTTATAGTCTGAAACACTAATTGGAAAAAGTCATTCTCCGAATTTAGTAACAAACTGATCAGTTTGTAATGGTGCTAAGAGACACGAAGAGATGGAAATAAATTAGCCCAGTGAATACACATTAATAAACTTTCAACACGATAATTGTTTTAGTAAGTAGAGTAATATAATGTTTAAAGCCATCTCGTACTCCATTGATGAGTTTTGAATAAAATCAATGTCAAATATTCTTACTATATAGCGTTAGAACTGCACAAATGAGAGTCGGATCCGAGGTCAATTTCTTGTCTAAAAGGATTCTTATCAAGACAATTTAAAAAAAAAGCTTTTGAGTACTAATGTAGTATCCTATTTAAAAAAAACTGACAATGAATGTTAACAAAACAGTTTAAAAAAATACAATGAAATTGCATGCATGAGTTTTTAATCACCAGTTTAAAATCTTAATTTTTAATATATTAAGAGGAATTGACCCATTTTTTTTCTTTTCGAACAACACACTTATAACAACAATCGATTTAGCGCTTGGCTATCATATAAATTTCATGTAC
Unaligned ( gi|21 ): TAGCTATGATCAAGTCTCCTAATATAATCTCACTTTTCACAAGGGAGTTATTCCTTTATATTTTCCACTATATATAATAGCAGCAGAAGGAATACCTCCTATAGTTTCTATATT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 22 2222222222222 1111 1111111111111 111111 1 1 111 11 111 111 111111 11111111 333333333333333333 11111111 1111 11111111 33333333333333333 1111 1111111 333333333333333333333333333 2222222 3333333333333 111 1111 11111111 1111 11 111 222222222 11111 2222 11111 1111 999999999999999999999999999999999999999999999999999999999 1111 1111 111 22222222 1111111 111111 111111111111111111111111111 1 22222 111 111 1111 111 11 11 55555555555555555 2222
lowQualScore : 4 66 8 4 4 33 3333333333333 3 0000 55 3 55 3 3 44 2 44 7777 77 1 3 3 88 3 555 3 7777 7 4 4 4 1 8888888888888 8 55 4 55 8 4 111111 8 666 3 666 2 8 555 66 4 55 77 000 0 66 3 66 99 000 6 6 5 66 66 5 77 5 666666 99999999 666666666666666666 77 77 5 5 5 5 33333333 5 3 77 2222 5 5 55555555 11111111111111111 2222 0 3333333 1 77 5 5 5 77 333333333333333333333333333 7777777 6 6 5 5 5 1111111111111 5 000 2222 5 55555555 2222 77 5 5 8 5 0 77 5 888 33 5 000 77 222222222 5 5 44444 4444 2 44444 2222 333333333333333333333333333333333333333333333333333333333 2222 2222 000 00000000 1111111 8 8 444444 11 111111111111111111111111111 0 8 8 00000 6 6 0 444 77 333 7777 000 8 11 0 8 00 00000000000000000 0 0 1111 2 2 0
lowQualScore : . .. . . . .. ............. . .... .. . .. . . .. . .. .... .. . . . .. . ... . .... . . . . . ............. . .. . .. . . ...... . ... . ... . . ... .. . .. .. ... . .. . .. .. ... . . . .. .. . .. . ...... ........ .................. .. .. . . . . ........ . . .. .... . . ........ ................. .... . ....... . .. . . . .. ........................... ....... . . . . . ............. . ... .... . ........ .... .. . . . . . .. . ... .. . ... .. ......... . . ..... .... . ..... .... ......................................................... .... .... ... ........ ....... . . ...... .. ........................... . . . ..... . . . ... .. ... .... ... . .. . . .. ................. . . .... . . .
lowQualScore : 4 11 9 0 0 44 0000000000000 6 0000 00 6 00 6 3 66 2 66 1111 99 2 3 3 66 6 555 6 7777 3 0 0 0 4 6666666666666 0 55 0 55 0 0 555555 1 111 2 444 0 0 666 11 4 00 99 000 7 99 2 99 22 000 7 2 0 99 99 0 99 7 444444 66666666 555555555555555555 11 99 7 7 7 7 11111111 0 6 99 1111 7 7 33333333 44444444444444444 1111 4 9999999 4 99 7 7 7 99 777777777777777777777777777 7777777 7 7 7 7 7 4444444444444 7 000 1111 7 33333333 1111 99 7 7 7 7 6 99 7 333 66 7 000 99 999999999 7 7 33333 9999 3 33333 1111 444444444444444444444444444444444444444444444444444444444 1111 1111 000 77777777 0000000 0 0 888888 88 444444444444444444444444444 6 0 0 00000 7 7 8 888 22 000 0000 000 0 00 8 0 66 00000000000000000 8 8 2222 5 5 2
consensus : NCAGGCTGT-CAAG--TCTCCT-AT-A-TTTTCCT--ATTTTTC--------A----G-GGAG---TTCCTT--TATTTT-C--CTA-TAT-T--TNG--GCA----AAAT--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT-GT--T---------CAA----GTAATT-----TTTTA-T---T-A-G-AGTAA-ATGATGTA-AAA-GC-------------ATTAATTA-CTTTG---ATAT----TCAA-GTCAA-----T--TT----TATAG--T-GT-AGATAC-TGTA--AAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAATCAA-----TTT-AAAAAAAAAAGCT-----TCT----AC-----------------GTAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACAA----GT---TTA--------AAA---T---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAATA----------------------CG-AAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
Reference ( family-5146 ) : NCAGGCTGT-CAAG--TCTCCT-AT-A-TTTTCCT-TATTTTTC--------A----G-GGAG---TTCCTT--TATTTT-C--CTA-TAT-T--TNG--GCA----AAAT--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT-GT--T---------CAA----GTGATT-----TTTTA-T---T-A-G-AGTAA-ATGATGTA-AAA-GC-------------ATTAATTA-CTTTG---ATAT----TCAA-GTCAA-----T--TT----TATAG--T-GT-AGATAC-TGTA--AAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAATCAA-----TTT-AAAAAAAAAAGCT-----TCT----AC-----------------GNAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACAA----GT---TTA--------AAA---T---ACAATGATGA-G-ACAGTTTCGAA-T-AAATTNTTTTAAATA----------------------CG-GAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-CTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
gi|1 : CAGGCTGG-CAAG--GTTCCT-AT-A-TTTTCCT-TATTTTTC--------A----G-GGA----TTCCTT--TATTTT-C--CTA-CAT-T--TTG--GCA----AAAT--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCAT-ATT------TAG-AAGTTTTTAACC--CCATTT-AAACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTTGCCCTTT-GATATGGTTTCCCAA--TTTCAGGTTTTCA----TGTT--AAAACACTT-TAACAGTA-----TCCAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG-------------------------AGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----AAT---------ATT-----AAAAG----GAAGAAA----AA-AGATTAAGCCCAGTTAAT--AAACAGTAA-TAA-ACT-GT--T---------CAA----GTAATT-----TTTTA-T---T-A-G-AGTAA-ATGATGTA-AAA-GC-------------ATTAATTA-CTTTG---ATAG----CCAA-GTCAA-----T--TT----TATAG--T-GT-AGATAC-TGTA--AAT-GA-A-GCC--AT-C---ATTC--AATTGT---------AA-GAT-TTTAATCAA-----TTTAAAAAAAAAAAAAT-----TCT----AC-----------------GTA-----TTTTT-----A-A-------TG-CA-------AAAA----GTTTACAA----GT---TTA--------AAA---T---ACAATGATGA-G-ATAATTTCAAA-T-AAATTATTTTAAAT---------------------------AAACTCCAACAAAAGGATTGG-TTGGATAT-TTA-AAT-----TACAAT-AACTGGTCAG-GGATCAAAGATT--AATTATAAGTTACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAT-AAAATGACAATAACTCTCTTTAAGACAGGCCCCGGGAGACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATATTA
gi|10 : aGTAA-ATGTTGTA-AAAAGC-------------ATCCATTA-CTTTG---ATAT----TCAA-GTCAG-----T--TT----TATAG--T-GT-AGATAC-TGTA--AAT-GA-A-GC---AT-C---ATTC--AACTGC---------AA-CAA-TTTAAGCAA-----TT--AAAAAAAAAAGCT-----TCT----AC-----------------TTAT----TTTTTTTTTTATA-------TG-CA-------GAAT----GTTTACAA----GT---TTA--------AAA---T---ACAATGATGA-G-ACAATTGCAAA-T-AAATTTTTTTTTTTT----------------------CTTGAAACTCAAACAAAAGGATTGG-TTGGATAT-TTG-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGA-C-AGG----TAATCCATT-TTG-CTCTTA--CTGAAAAG-AAAATGATAAGAA--CTCCTTAAGAC-----------G-TAG---GAAGCAGTTTTT
gi|11 : GCTGT-CAAG--TCTCCT-AT-A-TTTTCCT--ATTTTTC--------T----G-GGAG---TTCTTA--TATTTT-C--CTA-TAT-T--TGG--GCA----AATA--CCTCTAAT-TTTCC-TATATT-TT--GGCAAT-AACG--CT-G----TCATTTT-TAGTTTT-TTGATTTG-TT-GCTTCATAAATAATGCAAAAAAAAAA---AAAA-AAGAA--GTCA-AA-CAAG--TTAACCAT-GACATACTT-ACATCATT------TAG-AAGTTTTT-ACAACCCATTTTAA---------------TT-ACACATTT---ATGAACAACCAATATT--GGTAT-CAATGAAC-TTCCAGCATGCAGCAA--TATTAAAACA---TGAGTG-AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAA--TTTCAGGTTTTCACTCA
gi|12 : AGGCTGG-CAAG--GTTCCTGAT-A-TTT-CCT-TATTTTTC--------A----G-GGA----TTCCTT--TATTTT-C--CTA-CAT-T--TTG--GCA----AAAT--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCATCATT------TAG-AAGTTTTTAACC--CCA-TTTAAACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATA-T--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTT
gi|13 : CAGGCTGT-CAAG--TCTCCT-AT-A-TTTTCCT--ATTTTTC--------A----G-AGAG---TTCCTT--TATTTT-C--CTA-TAT-T--TGG--GCA----AAAT--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTAAAAAATAATGC---------GA--AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATT------TAG-AAGTTTTTAACC--CCATTTTAGACCACTAAATATA-TTTCATACAT
gi|14 : g-A-TCTTCCT--ATTTTTC--------A----G-GGA----TTCCTT--TATTTT-C--CTA-TAT-T--TGG--GCA----AAAT--CCTCCT----------ATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTCATT-G-TTCATAAATAATGC---------GAAAAAAA-AAGAA--GTCA-AATCAAG--TTAATCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTT--AACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CA
gi|15 : TC--------A----G-GGAG---TTCCTT--TATTTT-C--CTA-TAT-T--TTG--GCA----AAAT--CCTC---TAT--CC-TATATT-T---GG-AAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATATTTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--
gi|16 : --TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTG-CCTTTTGATATGGTTT--CAA--TTTCAGGTTTTCACTCATGTT--AAAACAC
gi|17 : -T--TTG--GCA----AAAT--CCTCCTATAT--CC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTTTCTTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATT-TTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--gtatagatagtttattgtcatgtaaattgttttgatattgaaataaattttaaatataaggggaggtggaggccaatttttgttaagagtatgactaatcattcattttacatcttatatt
gi|18 : ACTTT-AACTGGTCAG-GGATCAAAGATTTTAAT-AAAAGTGACC-AGGAATTTAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTTA--------------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTAc
gi|19 : A--TTTGAGGTTTTTACTCATGTT--AAAACACTTGTAACAGTG---ATACTAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TGATGTCTATGAGATGTATTAAGGTATTGGATG---TA---TA-cgattgatttgtgaggtggaggccaatttttgttaa
gi|2 : aataaagctctttgAACAGTG---ATTCCATATTTCTGACTCAT--GTCT--GTCTATC-AGA--AAATA------ATAAGAGGT-TTCA--------ATG---TA---TA-AA--CT-GATT-ATAGT--TG-AAAAAC-AATA-A---T----T-GGAAAAAATCAAATCC----AAGTT-AG-ATCAAACACT-----GATC--------ATT-----AAAAG----GAAGAGA----CT-AAATTAAGCC-AGTTAAT--AAACATTAAGTAAGACT-GT--T---------GAAT---GTAATT-----TTTTA-T-----A-G-AGTAA-ATGATATA-AAA-GC-------------ATTCATTA-CTTGG---ATAT----TCAA-GTCAA-----TTATT----TATAG--T-GT-AGATACTTGTA--AAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GATCTTTAAGC-A-----TTT---AAGAAAAGGCT-----TCT----AC-----------------ATATTTAGTTTTT-----A-A-------TG-CA-------AGAACAATGTTTACAA----GT---TTA--------AAA---T---ACAATGATGA-GAATAGTTTCCAAGTAAAATTATTTTAAATACGAGGGAATGACATTTTTTTTTCG-AAAACTCAAACAAAAGTTTAGGTTTGGATAT-TTATAATTCATGTACTTTAAAATGGTCAG-GA--CAAAGATT---ATC-AAAGTGACCAAGG----TAATCCA-TATTGCCTCTTACTCTG-AAAG-AAAATGATAAGGA--CTCCTTAAGAC-------------C-GGTAGAAGGAG--TTTG----GAA-TGGT-AAGATTT
gi|20 : CAGGCTGT-CAAGCATCTCTA-AT-AATTTTCC---ATTT--C--------A----GTGGAG---TTCCTT--TATTTT-C--TTA-TAT-T----G--GCA----AAAT--TCCTCTATATTTCC-TATATTGTTGAGGAAATAAAAG--CT-G----TCGTTTT-Catgatgggatttgtgacacagttaccaatattcttgcta
gi|21 : T-CAAG--TCTCCTAAT-A-TAAT-CT-CACTTTTCACA-----A----G-GGAGTTATTCCTTTATATTTT-CCACTA-TATATAATAGCAGCAGAAGGAATA-CCTCCTATAGTTTC-TATATT-tc
gi|22 : tagctatgaAGCTTTTTGCCCTTTTGATATGTTTTCCCAA--TTTCAGG--TGCACTCATGTT--AAAACACTT-TAGAAGTGATCATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-A
gi|3 : ataaTCCTGACTCGTACGTCTAATTCT--C-AGAGCAA-TA------ATAAGGCGTACTC----------TG---CACTCTG-AT--T--TAAT-ACAGTAGTG-AAAA-CCACTG-AAATT----TTGGAAAAAATCA--TCT----A-GTT-AG-ATCAAAC--CCCTCCGCT---------AT-----------------------------AGACTTAACGCG--TAAC--AAACATAAA-TAA-ATTCGT--TGACCTTCACCA------TGCTCGTCACTTTTA-A---T-A-GCGGTAA-ATGATG---AAA-GC-------------ATTAATTC-CTGTAGAAATAT----TCAA-GACAA-----T--TT----AATAGAAT-GT-AGAAAC-TAAA--AATTGA-ATGCCC-ATAC---ATTTCAAATTGC---------AACGAT-TTTAATCAA-----TTT-TTTAAAAAAGGCTCAACATCT----ACCATGCAGAAAGTTTAACGAAG----TTTTA-----A-A-------TA-CAATGAGGAGATA----ATTT-CAA----ATGAATTATCTCTCACAAA---TCAGACAG-GATAATG-ACAGTTTT---------TTCTTTTGGAAA--------------------------AAACTCAAACAAAAGGATTGATTGAGATATATTA-AAT-----TACTTT-AACT-GTCAATGGATCAAAGATA--GATTAAAAGTGG--------------CCA-C-TTA-TTCTTA--CTGAAAAGAAAAATGACAAGACCTCT-CTCA---------------GACAGGTAGAAGCAGTTTTAGAGAAGAACTGGTCAAGATCTTA
gi|4 : AGGGATTCA-------AATGATATA---TATAA--CTGGATTTATAGT--CT-GAAA-C-ACTA-A---T----T-GGAAAAAGTCA--TTCTCCGAATTT-AGTAACAAAC--T-----GATCAGTTTGTAATGGTGCTAAGAGACACGAAGAGATGGAAATAAATTA-GCCCAGTGAAT--ACACATTAA-TAA-ACT--T--T---------CAACACGATAATTG----TTTTAGTAAGT-A-G-AGTAATATAATGTTTAAA-GCCATCTCGTACTCCATTGATGAGTTTTG---A-ATAAAATCAATGTCAAATATTC--TTACTATATAG--C-GTTAGA-AC-TGCACAAAT-GAGA-GTCGGAT-CCGAGGTC--AATTTCTTGTCTAAAAG-GAT-TCTTATCAAGACAATTT-AAAAAAAAA-GCT-----TTTGAGTACTAATGTA----------GTATCC--TATTT-----A-AAAAAAACTGACAAT-----GAAT----GTTAACAAAACAGT---TTA--------AAAAAAT---ACAATGAcgatttttgatttgcgaccacaagttacagatcttgct
gi|5 : atcCAGGCTGT-CAAG--TCACCT-AT-A-TTTTCCTATATTTTTCCTATTTTTACTCTG-GGAG---TTCCTT--TAATTT-T--CTA-TAT-T--TTG--GCA----AAATTCCCTCCTATATTTCT-AATATT-TTT-GGCAAT-AAAGGCTT-GGACATCGTTTTTCAGTTCT-TTGATTTGATTTG-TTCAAAAATCATGC---------G---GAAA-TAAAA--GTCA-ATCCAAAGTTTAATCATTAACATACTT-ACATCATT------TAGAAAGTTTT--------------AGA--ACC----ATA-------ACATTT---ATGAACAACTAATATT--GGTAT-TAA--------ATAACATGCAGCAA--TAATAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTTAGGTTTTCACTCATGTT--AAAACACTT-AAACAGTG---ATTCCAT-TTTCTGACTCATA-GTCT--TTCT--CAAGA--AG-TA------ATAAGAGGTATTCA-------AATG---TA---TA-AAACT--GATT-ATAGT--TGAAAAA-C-ACTACA---TGTAATTGG-AAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATT-----AAAAG----GAAGAAA----AA-AGATTAAGCCTAGTTAATAAAAACATTAA-TAA-ACT-GC--T---------CAA----GT-ATT-----TTTaattgcatgcatgagtttttaatcaccagtttaaaatcttaatttttaatatattaagaggaattgacccattttttttcttttcgaacaacacacttataacaacaatcgatttagcgcttggctatcatataaatttcatgtac
gi|6 : gTCTGA-TCATA-ATCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA----A-AA-----GAT----------G-AAAA-C-ACTA-A---T----TTGGAAAA--TCA--TCC----AAGTT-AG-ATCAAAC--T-----GCT---------ATA-----AAATG----GAAGAGA----AA-AGATTACGCCCAGTTAAC--AA-CATTAA-TAA-ATT-GTCGT---------CAA---------T-----TTTTA-T-----A-G-AGTAA-ATTATGTA-AAA-GC-------------ATTAATCA-CTGTG---ATAT----TCAA-GACAA-----T--TT----TATAG--TGGT-AGA-AC-TAAA--AAA-GA-G-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAATCAT-----TTT-TTAAAAAAAAGCT-----TCT----AC-------------------------------------A-------TG-CA-------GAAA----GTTTAC-A----GT---TTA--------AAA---T---ACAATGAGGA-G-ATAATTTCGAA-T-GAATTA-TTTAAATA-----------------------G-AAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-TACTGGTAAG-
gi|7 : CAGGCTGTTCAAG--TCTCCT-ATTA-TTTTCCG--ATTTTTC--------T----G-AGAG---TTCCTT--TATTTTTC--CTAATAT-T--GGG--GAA----AAAT--CCTCTTATATTTCCATATATT-TT--GGCAAT-AAAG--CTTG----TCATTTTTCAGTTCT-TTGATTT-ATT-G-TTCATAATTAATGC---------G---AAAA-AAAAAAGGTCAGAATCAA---TTAACCATTGACATACTTTACATCATT------TAG-AAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTTTATACATTT---ATGAACAACCAATATTATGGTATTCAATGAAACTTACAGCATGCAGCAAATTATTAAAACAATATGAGTGAAAAAT-GCTTTTTGCCCTTTTGATATGG-TTCCCAATTTTTCAGG-TTTCACTCATGTTAAAAAACACTT-TAACAGTG---Aacaagataatta
gi|8 : cTTCACTCATGTT--AAAACAATT--AACAGTG---ATTCCAT-TTCCTGACTC--A-GTCT--TT-T--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--CA-GATT-ATAGT--TC-AAAA-C-ACTA-A---T----TTGGAAAAA-TCA--TCC----AAGTTTAG-ATCAAAC--T-----GAT---------ATA-----AAAAG----AAAGAAA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT-GT--T---------CAA----GTGATT-----TTTTT-T---TTATG-AGTAA-ATGATGTA-AAA-GC-------------ATTAATTA-CTTTG---ATAT----TCAA-GTCAA-----T--TT----TATAA--T-GT-AGATAC-TGTA--AAT-GA-T-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTCATCAA-----TT----AGAAGAAAGCT-----TCT----AC-----------------AAAT----TTTTT-----T-A-------TG-AA-------GAAA----GTTTACAA----GT---TTA--------AAA---T---ACAATGA
gi|9 : AGGCTGT-CAAG--TCTCCT-AT-A-TTTTCCT--ATTTTTC--------A----G-GGAG---TTCCTT--TATTTT-C--CTA-TAT-T--TGG--ACA----AAAT--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATTTTAATATAGTAAGCTTTTAACA--CCATTTTAGACCACT--TTATA-TT-----------------ACAACCAATATT--GGTAT-CAATGAAC-TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGC-TTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 1111111111 1111 1111111111111 111111 1 1 111 11 111 111 111111 11111111 333333333333333333 11111111 1111 11111111 33333333333333333 1111 1111111 22222222222 33333333 33333 3333333333333 111 1111 111 111111 11 111 222222222 11111 55555555555555555555555555555 1111 55555555555555555555555555555555555555555555555 1111 1111 111 222222222222 111 111111 0000000000000000000000000 1 22222 111 111 1111 111 11 11 55555555555555555 2222
lowQualScore : 4 66 4 4 4 4 7777777777 4444 3 3 666 55 3 55 3 3 44 2 44 8888888 1 3 3 88 3 555 3 7777 7 4 4 4 1 8888888888888 8 55 4 55 8 4 111111 8 666 3 666 2 8 555 66 4 55 77 000 0 66 3 66 99 000 6 6 5 66 66 5 77 5 666666 99999999 666666666666666666 77 77 5 5 5 5 33333333 5 3 77 2222 5 5 55555555 11111111111111111 2222 0 3333333 1 77 5 5 00000000000 77 33333333 5 6 33333 6 6 5 5 5 1111111111111 5 000 2222 5 000 77 666666 77 5 5 8 5 888 5 888 33 5 000 77 222222222 5 5 44444 88888888888888888888888888888 2222 22222222222222222222222222222222222222222222222 2222 2222 000 111111111111 000 8 8 444444 11 3333333333333333333333333 0 0 8 8 00000 6 6 0 444 77 333 7777 000 8 11 0 8 00 00000000000000000 0 0 1111 2 2 0
lowQualScore : . .. . . . . .......... .... . . ... .. . .. . . .. . .. ....... . . . .. . ... . .... . . . . . ............. . .. . .. . . ...... . ... . ... . . ... .. . .. .. ... . .. . .. .. ... . . . .. .. . .. . ...... ........ .................. .. .. . . . . ........ . . .. .... . . ........ ................. .... . ....... . .. . . ........... .. ........ . . ..... . . . . . ............. . ... .... . ... .. ...... .. . . . . ... . ... .. . ... .. ......... . . ..... ............................. .... ............................................... .... .... ... ............ ... . . ...... .. ......................... . . . . ..... . . . ... .. ... .... ... . .. . . .. ................. . . .... . . .
lowQualScore : 4 11 4 4 0 0 5555555555 1111 6 6 444 00 6 00 6 3 66 2 66 2222222 2 3 3 66 6 555 6 7777 3 0 0 0 4 6666666666666 0 55 0 55 0 0 555555 1 111 2 444 0 0 666 11 4 00 99 000 7 99 2 99 22 000 7 2 0 99 99 0 99 7 444444 66666666 555555555555555555 11 99 7 7 7 7 11111111 0 6 99 1111 7 7 33333333 44444444444444444 1111 4 9999999 4 99 7 7 33333333333 99 00000000 7 7 88888 7 7 7 7 7 4444444444444 7 000 1111 7 000 99 444444 99 7 7 7 7 444 7 333 66 7 000 99 999999999 7 7 33333 11111111111111111111111111111 1111 33333333333333333333333333333333333333333333333 1111 1111 000 777777777777 000 0 0 888888 88 6666666666666666666666666 8 6 0 0 00000 7 7 8 888 22 000 0000 000 0 00 8 0 66 00000000000000000 8 8 2222 5 5 2
consensus : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CAATTT----AAAAA-------------------AAAAAGCTTC----TAC-------GTAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAATAC----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
Reference ( family-5146 ) : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CAATTT----AAAAA-------------------AAAAAGCTTC----TAC-------GTAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAATAC----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
gi|1 : CAGGCTGG-CAAG--GTTCCT-A-T-ATTTTCCTTAT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-CAT-T--TTG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCAT-ATT------TAG-AAGTTTTTAACC--CCATTT-AAACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTTGCCCTTT-GATATGGTTTCCCAA--TTTCAGGTTTTCA----TGTT--AAAACACTT-TAACAGTA-----TCCAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG-------------------------AGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----AAT---------ATT-----AAAAG----GAAGAAA----AA-AGATTAAGCCCAGTTAAT--AAACAGTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAG----CCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGT---------AA-GAT-TTTAAT-----CAATTTA---AAAAA-------------------AAAAAAATTC----TAC-------GTA-----TTTTT-----A-A-------TG-CA-------AAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCAAA-T-AAATTATTTTAAAT--------------------------AAACTCCAACAAAAGGATTGG-TTGGATAT-TTA-AAT-----TACAAT-AACTGGTCAG-GGATCAAAGATT--AATTATAAGTTACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAT-AAAATGACAATAACTCTCTTTAAGACAGGCCCCGGGAGACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATATTA
gi|10 : aGTAA-ATGTTG-TAAAAAG-------------CATCCATTA-CTTTG---ATAT----TCAA-GTCA---GT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GC---AT-C---ATTC--AACTGC---------AA-CAA-TTTAAG-----CAATT-----AAAAA-------------------AAAAAGCTTC----TAC-------TTAT----TTTTTTTTTTATA-------TG-CA-------GAAT----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ACAATTGCAAA-T-AAATTTTTTTTTTTTCTT--------------------GAAA-CTCAAACAAAAGGATTGG-TTGGATAT-TTG-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGA-C-AGG----TAATCCATT-TTG-CTCTTA--CTGAAAAG-AAAATGATAAGAA--CTCCTTAAGAC-----------G-TAG---GAAGCAGTTTTT
gi|11 : GCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCT----G-GGAGTT---CTTATAT--TTT-CC--TA-TAT-T--TGG--GCAAAT----A--CCTCTAAT-TTTCC-TATATT-TT--GGCAAT-AACG--CT-G----TCATTTT-TAGTTTT-TTGATTTG-TT-GCTTCATAAATAATGCAAAAAAAAAA---AAAA-AAGAA--GTCA-AA-CAAG--TTAACCAT-GACATACTT-ACATCATT------TAG-AAGTTTTT-ACAACCCATTTTAA---------------TT-ACACATTT---ATGAACAACCAATATT--GGTAT-CAATGAAC-TTCCAGCATGCAGCAA--TATTAAAACA---TGAGTG-AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAA--TTTCAGGTTTTCACTCA
gi|12 : AGGCTGG-CAAG--GTTCCTGA-T-ATTTCCTT-AT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-CAT-T--TTG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCATCATT------TAG-AAGTTTTTAACC--CCA-TTTAAACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATA-T--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTT
gi|13 : CAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-AGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTAAAAAATAATGC---------GA--AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATT------TAG-AAGTTTTTAACC--CCATTTTAGACCACTAAATATA-TTTCATACAT
gi|14 : g-ATCTTCCT-AT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--GCAAAA----T--CCTCCT----------ATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTCATT-G-TTCATAAATAATGC---------GAAAAAAA-AAGAA--GTCA-AATCAAG--TTAATCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTT--AACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CA
gi|15 : TCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TTG--GCAAAA----T--CCTC---TAT--CC-TATATT-T---GG-AAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATATTTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--
gi|16 : --TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTG-CCTTTTGATATGGTTT--CAA--TTTCAGGTTTTCACTCATGTT--AAAACAC
gi|17 : -T--TTG--GCAAAA----T--CCTCCTATAT--CC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTTTCTTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATT-TTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--gtatagatagtttattgtcatgtaaattgttttgatattgaaataaattttaaatataaggggaggtggaggccaatttttgttaagagtatgactaatcattcattttacatcttatatt
gi|18 : ACTTT-AACTGGTCAG-GGATCAAAGATTTTAAT-AAAAGTGACC-AGGAATTTAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTTA--------------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTAc
gi|19 : A--TTTGAGGTTTTTACTCATGTT--AAAACACTTGTAACAGTG---ATACTAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TGATGTCTATGAGATGTATTAAGGTATTGGATG---TA---TA-cgattgatttgtgaggtggaggccaatttttgttaa
gi|2 : aataaagctctttgAACAGTG---ATTCCATATTTCTGACTCAT--GTCT--GTCTATC-AGA--AAATA------ATAAGAGGT-TTCA--------ATG---TA---TA-AA--CT-GATT-ATAGT--TG-AAAAAC-AATA-A---T----T-GGAAAAAATCAAATCC----AAGTT-AG-ATCAAACACT-----GATC--------ATT-----AAAAG----GAAGAGA----CT-AAATTAAGCC-AGTTAAT--AAACATTAAGTAAGACT----G---T--TGA--AT----GTAATT-TTTTA-T-----A-G-AGTAA-ATGATA-TAAAA-G-------------CATTCATTA-CTTGG---ATAT----TCAA-GTCA---ATTATT------TATAG--T-G-TAGATACTTG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GATCTTTAAG-----C-ATTT------AAG-------------------AAAAGGCTTC----TAC-------ATATTTAGTTTTT-----A-A-------TG-CA-------AGAACAATGTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-GAATAGTTTCCAAGTAAAATTATTTTAAATACGAGGGAATGACATTTTTTTTTCGAAAACTCAAACAAAAGTTTAGGTTTGGATAT-TTATAATTCATGTACTTTAAAATGGTCAG-GA--CAAAGATT---ATC-AAAGTGACCAAGG----TAATCCA-TATTGCCTCTTACTCTG-AAAG-AAAATGATAAGGA--CTCCTTAAGAC-------------C-GGTAGAAGGAG--TTTG----GAA-TGGT-AAGATTT
gi|20 : CAGGCTGT-CAAGCATCTCTA-A-T-AATTTTCC-AT----------TT--CA----GTGGAGTT---CCTTTAT--TTT-CT--TA-TAT-T----G--GCAAAA----T--TCCTCTATATTTCC-TATATTGTTGAGGAAATAAAAG--CT-G----TCGTTTT-Catgatgggatttgtgacacagttaccaatattcttgcta
gi|21 : T-CAAG--TCTCCT-AAT-ATAATCTC-AC----------TTTTCACAA-G-GGAGTTATTCCTTTATATTTT-CCACTA-TATATAATAGCAGCAGAAGGAATA-CCTCCTATAGTTTC-TATATT-tc
gi|22 : tagctatgaAGCTTTTTGCCCTTTTGATATGTTTTCCCAA--TTTCAGG--TGCACTCATGTT--AAAACACTT-TAGAAGTGATCATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-A
gi|3 : ataaTCCTGACTCGTACGTCTAATTCT--C-AGAGCAA-TA------ATAAGGCGTACTC----------TG---CACTCTG-AT--T--TAAT-ACAGTAGTG-AAAA-CCACTG-AAATT----TTGGAAAAAATCA--TCT----A-GTT-AG-ATCAAAC--CCCTCCGCT---------AT-----------------------------AGACTTAACGCG--TAAC--AAACATAAA-TAA-ATTCGTTGACCT--TCACCATGCTCGTCACT-TTTAA-T-----A-GCGGTAA-ATGATG---AAA-G-------------CATTAATTC-CTGTAGAAATAT----TCAA-GACA---AT--TT------AATAGAAT-G-TAGAAAC-TA--AAAATTGA-ATGCCC-ATAC---ATTTCAAATTGC---------AACGAT-TTTAAT-----CAATTTTTTAAAAAAGGCTCAACATCTACCATGCAGAAAGTTTA-----AC-------GAAG----TTTTA-----A-A-------TA-CAATGAGGAGATA----ATTT-CA----AATGAATT---ATCTCTCACAAATCAGACAG-GATAATG-ACAGTTTT---------TTCTTTTGGA-------------------------AAAAACTCAAACAAAAGGATTGATTGAGATATATTA-AAT-----TACTTT-AACT-GTCAATGGATCAAAGATA--GATTAAAAGTGG--------------CCA-C-TTA-TTCTTA--CTGAAAAGAAAAATGACAAGACCTCT-CTCA---------------GACAGGTAGAAGCAGTTTTAGAGAAGAACTGGTCAAGATCTTA
gi|4 : AGGGATTCA-------AATGATATA---TATAA--CTGGATTTATAGT--CT-GAAA-C-ACTA-A---T----T-GGAAAAAGTCA--TTCTCCGAATTT-AGTAACAAAC--T-----GATCAGTTTGTAATGGTGCTAAGAGACACGAAGAGATGGAAATAAATTA-GCCCAGTGAAT--ACACATTAA-TAA-ACT--------T--TCA--ACACG-ATAATTGTTTTAGTAAGT-A-G-AGTAATATAATGTTTAAA-GCCATCTCGTACTCCATTGATGAGTTTTG---A-ATAAAATCAATGTCAAATAT--TCTTACTATATAG--C-GTTAGA-AC-TGCACAAAT-GAGA-GTCGGAT-CCGAGGTC--AATTTCTTGTCTAAAAG-GAT-TCTTATCAAGACAATTT-----AAAA-------------------AAAAAGCTTTTGAGTACTAATGTAGTATCC--TATTT-----A-AAAAAAACTGACAAT-----GAAT----GTTAACAAAACAGT---TTAAAA--------AAAT---ACAATGAcgatttttgatttgcgaccacaagttacagatcttgct
gi|5 : atcCAGGCTGT-CAAG--TCACCT-A-T-ATTTTCCT-ATATTTTTCCTATTTTTACTCTG-GGAGTT---CCTTTAA--TTT-TC--TA-TAT-T--TTG--GCAAAA----TTCCCTCCTATATTTCT-AATATT-TTT-GGCAAT-AAAGGCTT-GGACATCGTTTTTCAGTTCT-TTGATTTGATTTG-TTCAAAAATCATGC---------G---GAAA-TAAAA--GTCA-ATCCAAAGTTTAATCATTAACATACTT-ACATCATT------TAGAAAGTTTT--------------AGA--ACC----ATA-------ACATTT---ATGAACAACTAATATT--GGTAT-TAA--------ATAACATGCAGCAA--TAATAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTTAGGTTTTCACTCATGTT--AAAACACTT-AAACAGTG---ATTCCAT-TTTCTGACTCATA-GTCT--TTCT--CAAGA--AG-TA------ATAAGAGGTATTCA-------AATG---TA---TA-AAACT--GATT-ATAGT--TGAAAAA-C-ACTACA---TGTAATTGG-AAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATT-----AAAAG----GAAGAAA----AA-AGATTAAGCCTAGTTAATAAAAACATTAA-TAA-ACT----G---C--TCA--A-----GT-ATT-TTTaattgcatgcatgagtttttaatcaccagtttaaaatcttaatttttaatatattaagaggaattgacccattttttttcttttcgaacaacacacttataacaacaatcgatttagcgcttggctatcatataaatttcatgtac
gi|6 : gTCTGA-TCATA-ATCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA----A-AA-----GAT----------G-AAAA-C-ACTA-A---T----TTGGAAAA--TCA--TCC----AAGTT-AG-ATCAAAC--T-----GCT---------ATA-----AAATG----GAAGAGA----AA-AGATTACGCCCAGTTAAC--AA-CATTAA-TAA-ATT----G---TCGTCA--A----------T-TTTTA-T-----A-G-AGTAA-ATTATG-TAAAA-G-------------CATTAATCA-CTGTG---ATAT----TCAA-GACA---AT--TT------TATAG--TGG-TAGA-AC-TA--AAAAA-GA-G-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CATTTT----TTAAA-------------------AAAAAGCTTC----TAC---------------------------A-------TG-CA-------GAAA----GTTTAC-----AGT---TT---A--------AAAT---ACAATGAGGA-G-ATAATTTCGAA-T-GAATTA-TTTAAATA-----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-TACTGGTAAG-
gi|7 : CAGGCTGTTCAAG--TCTCCT-A-TTATTTTCCG-AT----------TTTTCT----G-AGAGTT---CCTTTAT--TTTTCC--TAATAT-T--GGG--GAAAAA----T--CCTCTTATATTTCCATATATT-TT--GGCAAT-AAAG--CTTG----TCATTTTTCAGTTCT-TTGATTT-ATT-G-TTCATAATTAATGC---------G---AAAA-AAAAAAGGTCAGAATCAA---TTAACCATTGACATACTTTACATCATT------TAG-AAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTTTATACATTT---ATGAACAACCAATATTATGGTATTCAATGAAACTTACAGCATGCAGCAAATTATTAAAACAATATGAGTGAAAAAT-GCTTTTTGCCCTTTTGATATGG-TTCCCAATTTTTCAGG-TTTCACTCATGTTAAAAAACACTT-TAACAGTG---Aacaagataatta
gi|8 : cTTCACTCATGTT--AAAACAATT--AACAGTG---ATTCCAT-TTCCTGACTC--A-GTCT--TT-T--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--CA-GATT-ATAGT--TC-AAAA-C-ACTA-A---T----TTGGAAAAA-TCA--TCC----AAGTTTAG-ATCAAAC--T-----GAT---------ATA-----AAAAG----AAAGAAA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTGATT-TTTTT-T---TTATG-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAA--T-G-TAGATAC-TG--TAAAT-GA-T-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTCAT-----CAATT-------AGA-------------------AGAAAGCTTC----TAC-------AAAT----TTTTT-----T-A-------TG-AA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGA
gi|9 : AGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--ACAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATTTTAATATAGTAAGCTTTTAACA--CCATTTTAGACCACT--TTATA-TT-----------------ACAACCAATATT--GGTAT-CAATGAAC-TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGC-TTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 1111111111 1111 1111111111111 111111 1 1 111 11 111 111 111111 11111111 333333333333333333 11111111 1111 11111111 33333333333333333 1111 1111111 22222222222 33333333 33333 3333333333333 111 1111 111 111111 11 111 222222222 11111 55555555555555555555555555555 1111 55555555555555555555555555555555555555555555555 1111 1111 111 222222222222 111 111111 0000000000000000000000000 1 22222 111 111 1111 111 11 11 55555555555555555 2222
lowQualScore : 4 66 4 4 4 4 7777777777 4444 3 3 666 55 3 55 3 3 44 2 44 8888888 1 3 3 88 3 555 3 7777 7 4 4 4 1 8888888888888 8 55 4 55 8 4 111111 8 666 3 666 2 8 555 66 4 55 77 000 0 66 3 66 99 000 6 6 5 66 66 5 77 5 666666 99999999 666666666666666666 77 77 5 5 5 5 33333333 5 3 77 2222 5 5 55555555 11111111111111111 2222 0 3333333 1 77 5 5 00000000000 77 33333333 5 6 33333 6 6 5 5 5 1111111111111 5 000 2222 5 000 77 666666 77 5 5 8 5 888 5 888 33 5 000 77 222222222 5 5 44444 88888888888888888888888888888 2222 22222222222222222222222222222222222222222222222 2222 2222 000 111111111111 000 8 8 444444 11 3333333333333333333333333 0 0 8 8 00000 6 6 0 444 77 333 7777 000 8 11 0 8 00 00000000000000000 0 0 1111 2 2 0
lowQualScore : . .. . . . . .......... .... . . ... .. . .. . . .. . .. ....... . . . .. . ... . .... . . . . . ............. . .. . .. . . ...... . ... . ... . . ... .. . .. .. ... . .. . .. .. ... . . . .. .. . .. . ...... ........ .................. .. .. . . . . ........ . . .. .... . . ........ ................. .... . ....... . .. . . ........... .. ........ . . ..... . . . . . ............. . ... .... . ... .. ...... .. . . . . ... . ... .. . ... .. ......... . . ..... ............................. .... ............................................... .... .... ... ............ ... . . ...... .. ......................... . . . . ..... . . . ... .. ... .... ... . .. . . .. ................. . . .... . . .
lowQualScore : 4 11 4 4 0 0 5555555555 1111 6 6 444 00 6 00 6 3 66 2 66 2222222 2 3 3 66 6 555 6 7777 3 0 0 0 4 6666666666666 0 55 0 55 0 0 555555 1 111 2 444 0 0 666 11 4 00 99 000 7 99 2 99 22 000 7 2 0 99 99 0 99 7 444444 66666666 555555555555555555 11 99 7 7 7 7 11111111 0 6 99 1111 7 7 33333333 44444444444444444 1111 4 9999999 4 99 7 7 33333333333 99 00000000 7 7 88888 7 7 7 7 7 4444444444444 7 000 1111 7 000 99 444444 99 7 7 7 7 444 7 333 66 7 000 99 999999999 7 7 33333 11111111111111111111111111111 1111 33333333333333333333333333333333333333333333333 1111 1111 000 777777777777 000 0 0 888888 88 6666666666666666666666666 8 6 0 0 00000 7 7 8 888 22 000 0000 000 0 00 8 0 66 00000000000000000 8 8 2222 5 5 2
consensus : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CAATTT----AAAAA-------------------AAAAAGCTTC----TAC-------GTAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAATAC----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
Reference ( family-5146 ) : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CAATTT----AAAAA-------------------AAAAAGCTTC----TAC-------GTAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAATAC----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
gi|1 : CAGGCTGG-CAAG--GTTCCT-A-T-ATTTTCCTTAT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-CAT-T--TTG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCAT-ATT------TAG-AAGTTTTTAACC--CCATTT-AAACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTTGCCCTTT-GATATGGTTTCCCAA--TTTCAGGTTTTCA----TGTT--AAAACACTT-TAACAGTA-----TCCAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG-------------------------AGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----AAT---------ATT-----AAAAG----GAAGAAA----AA-AGATTAAGCCCAGTTAAT--AAACAGTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAG----CCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGT---------AA-GAT-TTTAAT-----CAATTTA---AAAAA-------------------AAAAAAATTC----TAC-------GTA-----TTTTT-----A-A-------TG-CA-------AAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCAAA-T-AAATTATTTTAAAT--------------------------AAACTCCAACAAAAGGATTGG-TTGGATAT-TTA-AAT-----TACAAT-AACTGGTCAG-GGATCAAAGATT--AATTATAAGTTACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAT-AAAATGACAATAACTCTCTTTAAGACAGGCCCCGGGAGACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATATTA
gi|10 : aGTAA-ATGTTG-TAAAAAG-------------CATCCATTA-CTTTG---ATAT----TCAA-GTCA---GT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GC---AT-C---ATTC--AACTGC---------AA-CAA-TTTAAG-----CAATT-----AAAAA-------------------AAAAAGCTTC----TAC-------TTAT----TTTTTTTTTTATA-------TG-CA-------GAAT----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ACAATTGCAAA-T-AAATTTTTTTTTTTTCTT--------------------GAAA-CTCAAACAAAAGGATTGG-TTGGATAT-TTG-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGA-C-AGG----TAATCCATT-TTG-CTCTTA--CTGAAAAG-AAAATGATAAGAA--CTCCTTAAGAC-----------G-TAG---GAAGCAGTTTTT
gi|11 : GCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCT----G-GGAGTT---CTTATAT--TTT-CC--TA-TAT-T--TGG--GCAAAT----A--CCTCTAAT-TTTCC-TATATT-TT--GGCAAT-AACG--CT-G----TCATTTT-TAGTTTT-TTGATTTG-TT-GCTTCATAAATAATGCAAAAAAAAAA---AAAA-AAGAA--GTCA-AA-CAAG--TTAACCAT-GACATACTT-ACATCATT------TAG-AAGTTTTT-ACAACCCATTTTAA---------------TT-ACACATTT---ATGAACAACCAATATT--GGTAT-CAATGAAC-TTCCAGCATGCAGCAA--TATTAAAACA---TGAGTG-AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAA--TTTCAGGTTTTCACTCA
gi|12 : AGGCTGG-CAAG--GTTCCTGA-T-ATTTCCTT-AT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-CAT-T--TTG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCATCATT------TAG-AAGTTTTTAACC--CCA-TTTAAACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATA-T--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTT
gi|13 : CAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-AGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTAAAAAATAATGC---------GA--AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATT------TAG-AAGTTTTTAACC--CCATTTTAGACCACTAAATATA-TTTCATACAT
gi|14 : g-ATCTTCCT-AT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--GCAAAA----T--CCTCCT----------ATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTCATT-G-TTCATAAATAATGC---------GAAAAAAA-AAGAA--GTCA-AATCAAG--TTAATCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTT--AACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CA
gi|15 : TCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TTG--GCAAAA----T--CCTC---TAT--CC-TATATT-T---GG-AAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATATTTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--
gi|16 : --TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTG-CCTTTTGATATGGTTT--CAA--TTTCAGGTTTTCACTCATGTT--AAAACAC
gi|17 : -T--TTG--GCAAAA----T--CCTCCTATAT--CC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTTTCTTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATT-TTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--gtatagatagtttattgtcatgtaaattgttttgatattgaaataaattttaaatataaggggaggtggaggccaatttttgttaagagtatgactaatcattcattttacatcttatatt
gi|18 : ACTTT-AACTGGTCAG-GGATCAAAGATTTTAAT-AAAAGTGACC-AGGAATTTAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTTA--------------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTAc
gi|19 : A--TTTGAGGTTTTTACTCATGTT--AAAACACTTGTAACAGTG---ATACTAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TGATGTCTATGAGATGTATTAAGGTATTGGATG---TA---TA-cgattgatttgtgaggtggaggccaatttttgttaa
gi|2 : aataaagctctttgAACAGTG---ATTCCATATTTCTGACTCAT--GTCT--GTCTATC-AGA--AAATA------ATAAGAGGT-TTCA--------ATG---TA---TA-AA--CT-GATT-ATAGT--TG-AAAAAC-AATA-A---T----T-GGAAAAAATCAAATCC----AAGTT-AG-ATCAAACACT-----GATC--------ATT-----AAAAG----GAAGAGA----CT-AAATTAAGCC-AGTTAAT--AAACATTAAGTAAGACT----G---T--TGA--AT----GTAATT-TTTTA-T-----A-G-AGTAA-ATGATA-TAAAA-G-------------CATTCATTA-CTTGG---ATAT----TCAA-GTCA---ATTATT------TATAG--T-G-TAGATACTTG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GATCTTTAAG-----C-ATTT------AAG-------------------AAAAGGCTTC----TAC-------ATATTTAGTTTTT-----A-A-------TG-CA-------AGAACAATGTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-GAATAGTTTCCAAGTAAAATTATTTTAAATACGAGGGAATGACATTTTTTTTTCGAAAACTCAAACAAAAGTTTAGGTTTGGATAT-TTATAATTCATGTACTTTAAAATGGTCAG-GA--CAAAGATT---ATC-AAAGTGACCAAGG----TAATCCA-TATTGCCTCTTACTCTG-AAAG-AAAATGATAAGGA--CTCCTTAAGAC-------------C-GGTAGAAGGAG--TTTG----GAA-TGGT-AAGATTT
gi|20 : CAGGCTGT-CAAGCATCTCTA-A-T-AATTTTCC-AT----------TT--CA----GTGGAGTT---CCTTTAT--TTT-CT--TA-TAT-T----G--GCAAAA----T--TCCTCTATATTTCC-TATATTGTTGAGGAAATAAAAG--CT-G----TCGTTTT-Catgatgggatttgtgacacagttaccaatattcttgcta
gi|21 : T-CAAG--TCTCCT-AAT-ATAATCTC-AC----------TTTTCACAA-G-GGAGTTATTCCTTTATATTTT-CCACTA-TATATAATAGCAGCAGAAGGAATA-CCTCCTATAGTTTC-TATATT-tc
gi|22 : tagctatgaAGCTTTTTGCCCTTTTGATATGTTTTCCCAA--TTTCAGG--TGCACTCATGTT--AAAACACTT-TAGAAGTGATCATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-A
gi|3 : ataaTCCTGACTCGTACGTCTAATTCT--C-AGAGCAA-TA------ATAAGGCGTACTC----------TG---CACTCTG-AT--T--TAAT-ACAGTAGTG-AAAA-CCACTG-AAATT----TTGGAAAAAATCA--TCT----A-GTT-AG-ATCAAAC--CCCTCCGCT---------AT-----------------------------AGACTTAACGCG--TAAC--AAACATAAA-TAA-ATTCGTTGACCT--TCACCATGCTCGTCACT-TTTAA-T-----A-GCGGTAA-ATGATG---AAA-G-------------CATTAATTC-CTGTAGAAATAT----TCAA-GACA---AT--TT------AATAGAAT-G-TAGAAAC-TA--AAAATTGA-ATGCCC-ATAC---ATTTCAAATTGC---------AACGAT-TTTAAT-----CAATTTTTTAAAAAAGGCTCAACATCTACCATGCAGAAAGTTTA-----AC-------GAAG----TTTTA-----A-A-------TA-CAATGAGGAGATA----ATTT-CA----AATGAATT---ATCTCTCACAAATCAGACAG-GATAATG-ACAGTTTT---------TTCTTTTGGA-------------------------AAAAACTCAAACAAAAGGATTGATTGAGATATATTA-AAT-----TACTTT-AACT-GTCAATGGATCAAAGATA--GATTAAAAGTGG--------------CCA-C-TTA-TTCTTA--CTGAAAAGAAAAATGACAAGACCTCT-CTCA---------------GACAGGTAGAAGCAGTTTTAGAGAAGAACTGGTCAAGATCTTA
gi|4 : AGGGATTCA-------AATGATATA---TATAA--CTGGATTTATAGT--CT-GAAA-C-ACTA-A---T----T-GGAAAAAGTCA--TTCTCCGAATTT-AGTAACAAAC--T-----GATCAGTTTGTAATGGTGCTAAGAGACACGAAGAGATGGAAATAAATTA-GCCCAGTGAAT--ACACATTAA-TAA-ACT--------T--TCA--ACACG-ATAATTGTTTTAGTAAGT-A-G-AGTAATATAATGTTTAAA-GCCATCTCGTACTCCATTGATGAGTTTTG---A-ATAAAATCAATGTCAAATAT--TCTTACTATATAG--C-GTTAGA-AC-TGCACAAAT-GAGA-GTCGGAT-CCGAGGTC--AATTTCTTGTCTAAAAG-GAT-TCTTATCAAGACAATTT-----AAAA-------------------AAAAAGCTTTTGAGTACTAATGTAGTATCC--TATTT-----A-AAAAAAACTGACAAT-----GAAT----GTTAACAAAACAGT---TTAAAA--------AAAT---ACAATGAcgatttttgatttgcgaccacaagttacagatcttgct
gi|5 : atcCAGGCTGT-CAAG--TCACCT-A-T-ATTTTCCT-ATATTTTTCCTATTTTTACTCTG-GGAGTT---CCTTTAA--TTT-TC--TA-TAT-T--TTG--GCAAAA----TTCCCTCCTATATTTCT-AATATT-TTT-GGCAAT-AAAGGCTT-GGACATCGTTTTTCAGTTCT-TTGATTTGATTTG-TTCAAAAATCATGC---------G---GAAA-TAAAA--GTCA-ATCCAAAGTTTAATCATTAACATACTT-ACATCATT------TAGAAAGTTTT--------------AGA--ACC----ATA-------ACATTT---ATGAACAACTAATATT--GGTAT-TAA--------ATAACATGCAGCAA--TAATAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTTAGGTTTTCACTCATGTT--AAAACACTT-AAACAGTG---ATTCCAT-TTTCTGACTCATA-GTCT--TTCT--CAAGA--AG-TA------ATAAGAGGTATTCA-------AATG---TA---TA-AAACT--GATT-ATAGT--TGAAAAA-C-ACTACA---TGTAATTGG-AAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATT-----AAAAG----GAAGAAA----AA-AGATTAAGCCTAGTTAATAAAAACATTAA-TAA-ACT----G---C--TCA--A-----GT-ATT-TTTaattgcatgcatgagtttttaatcaccagtttaaaatcttaatttttaatatattaagaggaattgacccattttttttcttttcgaacaacacacttataacaacaatcgatttagcgcttggctatcatataaatttcatgtac
gi|6 : gTCTGA-TCATA-ATCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA----A-AA-----GAT----------G-AAAA-C-ACTA-A---T----TTGGAAAA--TCA--TCC----AAGTT-AG-ATCAAAC--T-----GCT---------ATA-----AAATG----GAAGAGA----AA-AGATTACGCCCAGTTAAC--AA-CATTAA-TAA-ATT----G---TCGTCA--A----------T-TTTTA-T-----A-G-AGTAA-ATTATG-TAAAA-G-------------CATTAATCA-CTGTG---ATAT----TCAA-GACA---AT--TT------TATAG--TGG-TAGA-AC-TA--AAAAA-GA-G-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CATTTT----TTAAA-------------------AAAAAGCTTC----TAC---------------------------A-------TG-CA-------GAAA----GTTTAC-----AGT---TT---A--------AAAT---ACAATGAGGA-G-ATAATTTCGAA-T-GAATTA-TTTAAATA-----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-TACTGGTAAG-
gi|7 : CAGGCTGTTCAAG--TCTCCT-A-TTATTTTCCG-AT----------TTTTCT----G-AGAGTT---CCTTTAT--TTTTCC--TAATAT-T--GGG--GAAAAA----T--CCTCTTATATTTCCATATATT-TT--GGCAAT-AAAG--CTTG----TCATTTTTCAGTTCT-TTGATTT-ATT-G-TTCATAATTAATGC---------G---AAAA-AAAAAAGGTCAGAATCAA---TTAACCATTGACATACTTTACATCATT------TAG-AAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTTTATACATTT---ATGAACAACCAATATTATGGTATTCAATGAAACTTACAGCATGCAGCAAATTATTAAAACAATATGAGTGAAAAAT-GCTTTTTGCCCTTTTGATATGG-TTCCCAATTTTTCAGG-TTTCACTCATGTTAAAAAACACTT-TAACAGTG---Aacaagataatta
gi|8 : cTTCACTCATGTT--AAAACAATT--AACAGTG---ATTCCAT-TTCCTGACTC--A-GTCT--TT-T--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--CA-GATT-ATAGT--TC-AAAA-C-ACTA-A---T----TTGGAAAAA-TCA--TCC----AAGTTTAG-ATCAAAC--T-----GAT---------ATA-----AAAAG----AAAGAAA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTGATT-TTTTT-T---TTATG-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAA--T-G-TAGATAC-TG--TAAAT-GA-T-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTCAT-----CAATT-------AGA-------------------AGAAAGCTTC----TAC-------AAAT----TTTTT-----T-A-------TG-AA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGA
gi|9 : AGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--ACAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATTTTAATATAGTAAGCTTTTAACA--CCATTTTAGACCACT--TTATA-TT-----------------ACAACCAATATT--GGTAT-CAATGAAC-TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGC-TTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-
blockSeqs : T CA G A T . ATTTTTCCTA CTCT T G ATT AT T AC A A AA G CA GGAATA T A G GA A GCT T GACA T C T C T AAAAAAAAAA A AG G GT T T TTAATA T AAC T AAA T C ATG AT T AC AT ATA TT T AA GT ATC A A C AA AT A GC A ATGTCT GGTATTGG ATATATATAACTG TT AG A A C C TGTAA T A AA TCCG T T CCCTCC CAGTTTGTAATGGTGCT ACAC TGGAAAT A AA G G CGTTGACCT CC TGCTCGTC G G AAGT T C T T A CCATCTCGTACTC G GAA AAAA T AAT TA TTACTA AA G T T T CAC T AT GG A CGA CA TTGTCTAAA C C CAAGA TTTTAAAAAAGGCTCAACATCTACCATGC TGAG TAATGTAGTATCCTATTTAAAAAAAACTGACAAT CAAT AAAC GAA ATCTCTCAC CAG T A CAAGTA TT TACGAGGGAATGACATTTTTTTTTC T A T TCATG A T TTA CA CCA AATT TT C CT A CT AGACG AGAA C C
blockSeqs : . . . . . . . CAA . G . . . . . . . T . TTC T . . T . C . . T . . . A GAAA A . . . T . . T C T T T T ATG . . C . . . T . T . . A . . . . . . . A CACTCTGATT T . . . . . AATT T A . . . . ACT CATT . CT A . . . GTCG . CACGATA . . TT . . . . . . . . . . . . . . . . T . T . GA C . . . . . . . TTTAAA . GAAGTTTTAAATACAATGAGGA . . . AAAA . . . AAAT AT TTCTT T . . . . . A TA CC . TA . . . CT AGAC . C C
blockSeqs : . . . . . . . . . G . . . . . . . G . A T . . . . C . . . . . . A GA . . . . . . . T C T T T . . . . C . . . T . A . . G . . . . . . . A TATAAAACT T . . . . . T T G . . . . T ATT . AA A . . . GT . TGTA . . . . . . . . . . . . . . . . . . . A . T . A . . . . . . . . AAAAA . TTATTTTTTTTTTTATATGCA . . . A . . . GAAT CT TA T . . . . . G A C . T . . . . AGA . . .
blockSeqs : . . . . . . . . . G . . . . . . . G . T T . . . . C . . . . . . T G . . . . . . . A A T T . . . . . . . . . T . T . . G . . . . . . . G TATAAACT T . . . . . T T A . . . . T ATA . AA C . . . GC . GTG . . . . . . . . . . . . . . . . . . . T . A . A . . . . . . . . TAAAA . ATATTTAGTTTTTAATGCA . . . A . . . . A . . . . . . . . C . . C . . . . GA
blockSeqs : . . . . . . . . . G . . . . . . . T . T T . . . . C . . . . . . T G . . . . . . . T A T T . . . . . . . . . T . . . . A . . . . . . . G TATAAACA T . . . . . T . . . . . . T ATA . AA A . . . GT . GT . . . . . . . . . . . . . . . . . . . . . A . G . . . . . . . . TAAG . AAATTTTTTTATGAA . . . A . . .
blockSeqs : . . . . . . . . . G . . . . . . . T . T T . . . . C . . . . . . T G . . . . . . . . A T T . . . . . . . . . . . . A . . . . . . . . TAAAA . . . . . . T . . . . . . T AT . . . . . . T . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . AGA . ATGCA . . . A .
blockSeqs : . . . . . . . . . G . . . . . . . A . T T . . . . C . . . . . . A G . . . . . . . . A T T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . T . T T . . . . C . . . . . . T G . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . G . T . . . . . C . . . . . . T G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . G . T . . . . . . . . .
blockSeqs : . . . . T . . .
blockSeqCons : C** TATAAACT********** T* GCT***** ***** TAAAA************************ NNATTTAGTTTTTAATGCA**************************** T************************ CA T** ** AGAC*************
originalCons : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---TA-AA--C--GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--A-----GTAATT-TTTTA-T---T-A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CAATTT----AAAAA-------------------AAAAAGCTTC----TAC-------GTAT----TTTTT-----A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAATAC----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCCTTAAGAC-----------GACAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
finalCons : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAGC--T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATGTATAAACT----------GATT-ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAGTT-AG-ATCAAAC--T-----GAT---------ATN-----AAAAG----GAAGAGA----AA-AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT----G---T--TCA--AGCT-----ATT-TTTTA-T-----A-G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CAATTTAAAA------------------------AAAAAGCTTC----TACNNATTTAGTTTTTAATGCA----------------------------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTAAAT------------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCAT--TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAA--CTCCTTAAGAC-------------CAGGTAGAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 1111111111 1111 1111111111111 111111 1 1 111 11 111 111 111111 11111111 222222222222222222222222 22222222 1111 11111111 33333333333333333 1111 1111111 555555555555555555555555555 11111 3333333333333 111 1111 111 111111 11 111 222222222 11111 1111 11111 1111 777777777777777777777777777777777777777777777777777777 1111 1111 111 222222222222 111 111111 00000000000000000000000000000000 1 22222 111 111 1111 111 11 11 11 5555555555555555 2222
lowQualScore : 4 66 4 4 4 4 7777777777 4444 3 3 666 55 3 55 3 3 44 2 44 8888888 1 3 3 88 3 555 3 7777 7 4 4 4 1 8888888888888 8 55 4 55 8 4 111111 8 666 3 666 2 8 555 66 4 55 77 000 0 66 3 66 99 000 6 6 5 66 66 5 77 5 666666 99999999 111111111111111111111111 77 5 5 5 5 00000000 5 77 2222 5 5 55555555 11111111111111111 2222 0 3333333 1 77 5 5 5 77 555555555555555555555555555 5 66666 6 6 5 5 5 1111111111111 5 000 2222 5 000 77 666666 77 5 5 8 5 888 5 888 33 5 000 77 222222222 5 5 44444 5 1111 77 44444 2222 444444444444444444444444444444444444444444444444444444 2222 2222 000 111111111111 000 8 8 444444 11 11111111111111111111111111111111 0 5 8 8 00000 6 6 0 444 77 333 7777 000 8 11 0 8 11 11 1 9999999999999999 8 0 1111 2 2 0
lowQualScore : . .. . . . . .......... .... . . ... .. . .. . . .. . .. ....... . . . .. . ... . .... . . . . . ............. . .. . .. . . ...... . ... . ... . . ... .. . .. .. ... . .. . .. .. ... . . . .. .. . .. . ...... ........ ........................ .. . . . . ........ . .. .... . . ........ ................. .... . ....... . .. . . . .. ........................... . ..... . . . . . ............. . ... .... . ... .. ...... .. . . . . ... . ... .. . ... .. ......... . . ..... . .... .. ..... .... ...................................................... .... .... ... ............ ... . . ...... .. ................................ . . . . ..... . . . ... .. ... .... ... . .. . . .. .. . ................ . . .... . . .
lowQualScore : 4 11 4 4 0 0 5555555555 1111 6 6 444 00 6 00 6 3 66 2 66 2222222 2 3 3 66 6 555 6 7777 3 0 0 0 4 6666666666666 0 55 0 55 0 0 555555 1 111 2 444 0 0 666 11 4 00 99 000 7 99 2 99 22 000 7 2 0 99 99 0 99 7 444444 66666666 000000000000000000000000 99 7 7 7 7 11111111 0 99 1111 7 7 33333333 44444444444444444 1111 4 9999999 7 99 7 7 7 99 999999999999999999999999999 7 77777 7 7 7 7 7 4444444444444 7 000 1111 7 000 99 444444 99 7 7 7 7 444 7 333 66 7 000 99 999999999 7 7 33333 7 0000 99 33333 1111 111111111111111111111111111111111111111111111111111111 1111 1111 000 777777777777 000 0 0 888888 88 00000000000000000000000000000000 8 4 0 0 00000 7 7 8 888 22 000 0000 000 0 00 8 0 00 00 0 6666666666666666 0 8 2222 5 5 2
consensus : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA-T-A-AACTGA--TT----ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAG-TTAG-ATCAAAC--T-----GAT---------AT-----TAAAAG----GAAGAGA---AA--AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT-GT--T---------CAA---GTN----A----TT-TTTTA-----T-AG-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CA-ATTTAA-AAAAAAAGC--T-----TC----TACNN--------ATTTA-----GT-T----TTT-A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTA----AATA-----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAA--CTCC--TTAAGAC-------------CAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
Reference ( family-5146 ) : NCAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TNG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CAATGAA--TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-TAACAGTG---ATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA-T-A-AACTGA--TT----ATAGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAG-TTAG-ATCAAAC--T-----GAT---------AT-----NAAAAG----GAAGAGA---AA--AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT-GT--T---------CAA---GCT----A----TT-TTTTA-----T-AG-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CA-ATTTAA-AAAAAAAGC--T-----TC----TACNN--------ATTTA-----GT-T----TTT-A-A-------TG-CA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCGAA-T-AAATTATTTTA----AAT------------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAA--CTCC--TTAAGAC-------------CAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATCTTA
gi|1 : CAGGCTGG-CAAG--GTTCCT-A-T-ATTTTCCTTAT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-CAT-T--TTG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCAT-ATT------TAG-AAGTTTTTAACC--CCATTT-AAACCACT--TTATA-TTT-ATACATTT---ATGAACAACCAATATT--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTTGCCCTTT-GATATGGTTTCCCAA--TTTCAGGTTTTCA----TGTT--AAAACACTT-TAACAGTA-----TCCAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG--------------------------AGT--TG-AAAA-C-ACTA-A---T----TTGGAAAAAATCA--TCC----AAG-TTAG-ATCAAAC--T-----AAT---------AT-----TAAAAG----GAAGAAA---AA--AGATTAAGCCCAGTTAAT--AAACAGTAA-TAA-ACT-GT--T---------CAA---GTA----A----TT-TTTTA-----TTAG-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAG----CCAA-GTCA---AT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGT---------AA-GAT-TTTAAT-----CA-ATTTAA-AAAAAAAAAAAT-----TC----TACGT--------ATTT---------------TT-A-A-------TG-CA-------AAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ATAATTTCAAA-T-AAATTATTTTA----AAT--------------------------AAACTCCAACAAAAGGATTGGTT-GGATAT-TTA-AAT-----TACAAT-AACTGGTCAG-GGATCAAAGATT--AATTATAAGTTACC-AGG----TAATCCA-T-TTG-TTCTTA--CTGAAAAT-AAAATGACAATAA--CTCTCTTTAAGACAGGCCCCGGGAGACAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATATTA
gi|10 : aGTAA-ATGTTG-TAAAAAG-------------CATCCATTA-CTTTG---ATAT----TCAA-GTCA---GT--TT------TATAG--T-G-TAGATAC-TG--TAAAT-GA-A-GC---AT-C---ATTC--AACTGC---------AA-CAA-TTTAAG-----CA-ATTAAA-AAAAAAAGC--T-----TC----TACTT--------ATTTT-----TT-T----TTTTATA-------TG-CA-------GAAT----GTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-G-ACAATTGCAAA-T-AAATTTTTTTTTTTTCTT------------------------GAAA-CTCAAACAAAAGGATTGGTT-GGATAT-TTG-AAT-----TACTTT-AACTGGTCAG-GGATCAAAGATT--AATCAAAAGTGA-C-AGG----TAATCCATT-TTG-CTCTTA--CTGAAAAG-AAAATGATAAGAA--CTCC--TTAAGAC----------------GTAGGAAGCAGTTTTT
gi|11 : GCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCT----G-GGAGTT---CTTATAT--TTT-CC--TA-TAT-T--TGG--GCAAAT----A--CCTCTAAT-TTTCC-TATATT-TT--GGCAAT-AACG--CT-G----TCATTTT-TAGTTTT-TTGATTTG-TT-GCTTCATAAATAATGCAAAAAAAAAA---AAAA-AAGAA--GTCA-AA-CAAG--TTAACCAT-GACATACTT-ACATCATT------TAG-AAGTTTTT-ACAACCCATTTTAA---------------TT-ACACATTT---ATGAACAACCAATATT--GGTAT-CAATGAAC-TTCCAGCATGCAGCAA--TATTAAAACA---TGAGTG-AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAA--TTTCAGGTTTTCACTCA
gi|12 : AGGCTGG-CAAG--GTTCCTGA-T-ATTTCCTT-AT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-CAT-T--TTG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG---T-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTCAAAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-GACATACTT-GCATCATT------TAG-AAGTTTTTAACC--CCA-TTTAAACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATA-T--GGTAT-AAATGAA--TTACAACATGCAGCAA--TATTAAAACA---TGAGTGAAGAATAGCTTTTT
gi|13 : CAGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-AGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--GCAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTGATT-G-TTAAAAAATAATGC---------GA--AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATT------TAG-AAGTTTTTAACC--CCATTTTAGACCACTAAATATA-TTTCATACAT
gi|14 : g-ATCTTCCT-AT----------TTTTCA----G-GGA-TT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--GCAAAA----T--CCTCCT----------ATATT-TT--GGCAAT-AAAG--CT-G----TCGTTTT-CAGTTCT-TTGATTTCATT-G-TTCATAAATAATGC---------GAAAAAAA-AAGAA--GTCA-AATCAAG--TTAATCAT-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTT--AACCACT--TTATATTTT-ATACATTT---ATGAACAACCAATATT--GGTAT-CA
gi|15 : TCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TTG--GCAAAA----T--CCTC---TAT--CC-TATATT-T---GG-AAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATATTTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--
gi|16 : --TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGCTTTTTG-CCTTTTGATATGGTTT--CAA--TTTCAGGTTTTCACTCATGTT--AAAACAC
gi|17 : -T--TTG--GCAAAA----T--CCTCCTATAT--CC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTTTCTTGATTAGATT-T-TTCATAAATAATGC---------G---AAAAAAAGAA--GTTA-AATCAAG--TTAACCAC-GACATACTT-ACATCATT------TAGTAAGTTTTTAACA--CCATTTTAGACCACT--TTATT-TTT-ATACATTTATGATGAACAACCAATATT--GGCAT-CAATGAA--gtatagatagtttattgtcatgtaaattgttttgatattgaaataaattttaaatataaggggaggtggaggccaatttttgttaagagtatgactaatcattcattttacatcttatatt
gi|18 : ACTTT-AACTGGTCAG-GGATCAAAGATTTTAAT-AAAAGTGACC-AGGAATTTAATCCA-T-TTG-TTCTTA--CTGAAAAG-AAAATGACAAGAACTCTCC--TTTAGA--------------CAGGTA-GAAGCAGTTTTTG----GAACTGGTCAAGATCTTAc
gi|19 : A--TTTGAGGTTTTTACTCATGTT--AAAACACTTGTAACAGTG---ATACTAT-TTTCTGACTCATA-GTCT--TTCT--C-AGA--AA-TGATGTCTATGAGATGTATTAAGGTATTGGATG---TA-T-A-cgattgatttgtgaggtggaggccaatttttgttaa
gi|2 : aataaagctctttgAACAGTG---ATTCCATATTTCTGACTCAT--GTCT--GTCTATC-AGA--AAATA------ATAAGAGGT-TTCA--------ATG---TA-T-A-AACTGA--TT----ATAGT--TG-AAAAAC-AATA-A---T----T-GGAAAAAATCAAATCC----AAG-TTAG-ATCAAACACT-----GATC--------AT-----TAAAAG----GAAGAGA---CT--AAATTAAGCC-AGTTAAT--AAACATTAAGTAAGACT-GT--T---------GAAT--GTA----A----TT-TTTTA-----T-AG-AGTAA-ATGATA-TAAAA-G-------------CATTCATTA-CTTGG---ATAT----TCAA-GTCA---ATTATT------TATAG--T-G-TAGATACTTG--TAAAT-GA-A-GCC--AT-C---ATTC--AATTGC---------AA-GATCTTTAAG-----C--ATTT-A-AGAAAAGGC--T-----TC----TACAT--------ATTTA-----GT-T----TTT-A-A-------TG-CA-------AGAACAATGTTTACA----AGT---TT---A--------AAAT---ACAATGATGA-GAATAGTTTCCAAGTAAAATTATTTTA----AATACGAGGGAATGACATTTTTTTTTCGAAAACTCAAACAAAAGTTTAGGTTTGGATAT-TTATAATTCATGTACTTTAAAATGGTCAG-GA--CAAAGATT---ATC-AAAGTGACCAAGG----TAATCCA-TATTGCCTCTTACTCTG-AAAG-AAAATGATAAGGA--CTCC--TTAAGAC-------------C-GGTA-GAAGGAG--TTTG----GAA-TGGT-AAGATTT
gi|20 : CAGGCTGT-CAAGCATCTCTA-A-T-AATTTTCC-AT----------TT--CA----GTGGAGTT---CCTTTAT--TTT-CT--TA-TAT-T----G--GCAAAA----T--TCCTCTATATTTCC-TATATTGTTGAGGAAATAAAAG--CT-G----TCGTTTT-Catgatgggatttgtgacacagttaccaatattcttgcta
gi|21 : T-CAAG--TCTCCT-AAT-ATAATCTC-AC----------TTTTCACAA-G-GGAGTTATTCCTTTATATTTT-CCACTA-TATATAATAGCAGCAGAAGGAATA-CCTCCTATAGTTTC-TATATT-tc
gi|22 : tagctatgaAGCTTTTTGCCCTTTTGATATGTTTTCCCAA--TTTCAGG--TGCACTCATGTT--AAAACACTT-TAGAAGTGATCATTCCAT-TTTCTGACTCGTA-GTCT--TTCT--C-A
gi|3 : ataaTCCTGACTCGTACGTCTAATTCT--C-AGAGCAA-TA------ATAAGGCGTACTC----------TG---CACT-----CTGA--TTTAATACAGTAGTG-AAAA-CCACTG-AAATT----TTGGAAAAAATCA--TCT----A-G-TTAG-ATCAAAC--CCCTCCGCT---------AT-----------------------------AGACTTAACGCG--TAAC--AAACATAAA-TAA-ATTCGT--TGACCTTCACCAT---GCTCGTCA----CT-TTTAA-----T-AGCGGTAA-ATGATG---AAA-G-------------CATTAATTC-CTGTAGAAATAT----TCAA-GACA---AT--TT------AATAGAAT-G-TAGAAAC-TA--AAAATTGA-ATGCCC-ATAC---ATTTCAAATTGC---------AACGAT-TTTAAT-----CA-ATTTTTTAAAAAAGGC--TCAACATC----TACCATGCAGAAAGTTTAACGAAGT-T----TTA-A-A-------TA-CAATGAGGAGATA----ATTT-CA----AATGAATT---ATCTCTCACAAATCAGACAG-GATAATG-ACAGTTTT---------TTCTTTTG----GA-------------------------AAAAACTCAAACAAAAGGATTGATTGAGATATATTA-AAT-----TACTTT-AACT-GTCAATGGATCAAAGATA--GATTAAAAGTGG--------------CCA-C-TTA-TTCTTA--CTGAAAAGAAAAATGACAAGAC--CTCT--CTCAGA--------------CAGGTA-GAAGCAGTTTTAGAGAAGAACTGGTCAAGATCTTA
gi|4 : AGGGATTCA-------AATGATATA-T-ATAACTGGATTT----ATAGT--CT-GAAA-C-ACTA-A--------TTGGAAAAAGTCA--TTCTCCGAAT-TTAGTAACAAAC--T-----GATCAGTTTGTAATGGTGCTAAGAGACACGAAGAGATGGAAATAAATT-AGCCCAGTGAAT--ACACATTAA-TAA-ACT--T--T---------CAACACGATA---A----TTGTTTTAGTAAGT-AG-AGTAATATAATGTTTAAA-GCCATCTCGTACTCCATTGATGAGTTTTG---A-ATAAAATCAATGTCAAATAT--TCTTACTATATAG--C-GTTAGA-AC-TGCACAAAT-GAGA-GTCGGAT-CCGAGGTC--AATTTCTTGTCTAAAAG-GAT-TCTTATCAAGACA-ATTTAA-AAAAAAAGC--T-----TTTGAGTACTA--------ATGTA-----GTATCCTATTT-A-AAAAAAACTGACAAT-----GAAT----GTTAACAAAACAGT---TTAAAA--------AAAT---ACAATGAcgatttttgatttgcgaccacaagttacagatcttgct
gi|5 : atcCAGGCTGT-CAAG--TCACCT-A-T-ATTTTCCT-ATATTTTTCCTATTTTTACTCTG-GGAGTT---CCTTTAA--TTT-TC--TA-TAT-T--TTG--GCAAAA----TTCCCTCCTATATTTCT-AATATT-TTT-GGCAAT-AAAGGCTT-GGACATCGTTTTTCAGTTCT-TTGATTTGATTTG-TTCAAAAATCATGC---------G---GAAA-TAAAA--GTCA-ATCCAAAGTTTAATCATTAACATACTT-ACATCATT------TAGAAAGTTTT--------------AGA--ACC----ATA-------ACATTT---ATGAACAACTAATATT--GGTAT-TAA--------ATAACATGCAGCAA--TAATAAAACA---TGAGTGAAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAA--TTTTAGGTTTTCACTCATGTT--AAAACACTT-AAACAGTG---ATTCCAT-TTTCTGACTCATA-GTCT--TTCT--CAAGA--AG-TA------ATAAGAGGTATTCA-------AATG---TA-TAA-AACTGA--TT----ATAGT--TGAAAAA-C-ACTACA---TGTAATTGG-AAAAATCA--TCC----AAG-TTAG-ATCAAAC--T-----GAT---------AT-----TAAAAG----GAAGAAA---AA--AGATTAAGCCTAGTTAATAAAAACATTAA-TAA-ACT-GC--T---------CAA---G-T----A----TT-TTTaattgcatgcatgagtttttaatcaccagtttaaaatcttaatttttaatatattaagaggaattgacccattttttttcttttcgaacaacacacttataacaacaatcgatttagcgcttggctatcatataaatttcatgtac
gi|6 : gTCTGA-TCATA-ATCT--TTCT--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA---A-AA--GA--T-------------G-AAAA-C-ACTA-A---T----TTGGAAAA--TCA--TCC----AAG-TTAG-ATCAAAC--T-----GCT---------AT-----AAAATG----GAAGAGA---AA--AGATTACGCCCAGTTAAC--AA-CATTAA-TAA-ATT-GTCGT---------CAA----------------T-TTTTA-----T-AG-AGTAA-ATTATG-TAAAA-G-------------CATTAATCA-CTGTG---ATAT----TCAA-GACA---AT--TT------TATAG--TGG-TAGA-AC-TA--AAAAA-GA-G-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTAAT-----CATTTTTTA-AAAAAAAGC--T-----TC----TAC----------------------------------A-------TG-CA-------GAAA----GTTTAC-----AGT---TT---A--------AAAT---ACAATGAGGA-G-ATAATTTCGAA-T-GAATTA-TTTA----AATA-----------------------GAAAACTCAAACAAAAGGATTGGTTTGGATAT-TTA-AAT-----TACTTT-TACTGGTAAG-
gi|7 : CAGGCTGTTCAAG--TCTCCT-A-TTATTTTCCG-AT----------TTTTCT----G-AGAGTT---CCTTTAT--TTTTCC--TAATAT-T--GGG--GAAAAA----T--CCTCTTATATTTCCATATATT-TT--GGCAAT-AAAG--CTTG----TCATTTTTCAGTTCT-TTGATTT-ATT-G-TTCATAATTAATGC---------G---AAAA-AAAAAAGGTCAGAATCAA---TTAACCATTGACATACTTTACATCATT------TAG-AAGTTTTTAACA--CCATTTTAGACCACT--TTATA-TTTTATACATTT---ATGAACAACCAATATTATGGTATTCAATGAAACTTACAGCATGCAGCAAATTATTAAAACAATATGAGTGAAAAAT-GCTTTTTGCCCTTTTGATATGG-TTCCCAATTTTTCAGG-TTTCACTCATGTTAAAAAACACTT-TAACAGTG---Aacaagataatta
gi|8 : cTTCACTCATGTT--AAAACAATT--AACAGTG---ATTCCAT-TTCCTGACTC--A-GTCT--TT-T--C-AGA--AA-TA------ATAAGAGGTATTCA-------GATG---TA-T-A-AACAGA--TT----ATAGT--TC-AAAA-C-ACTA-A---T----TTGG-AAAAATCA--TCC----AAGTTTAG-ATCAAAC--T-----GAT---------AT-----AAAAAG----AAAGAAA---AA--AGATTAAGCCCAGTTAAT--AAACATTAA-TAA-ACT-GT--T---------CAA---GTG----ATTTTTT-TTTTA-----T--G-AGTAA-ATGATG-TAAAA-G-------------CATTAATTA-CTTTG---ATAT----TCAA-GTCA---AT--TT------TATAA--T-G-TAGATAC-TG--TAAAT-GA-T-GCC--AT-C---ATTC--AATTGC---------AA-GAT-TTTCAT-----CA-ATT--A-GAAGAAAGC--T-----TC----TACAA--------ATTT-------T-T----TT----A-------TG-AA-------GAAA----GTTTACA----AGT---TT---A--------AAAT---ACAATGA
gi|9 : AGGCTGT-CAAG--TCTCCT-A-T-ATTTTCCT-AT----------TTTTCA----G-GGAGTT---CCTTTAT--TTT-CC--TA-TAT-T--TGG--ACAAAA----T--CCTCCTATATTTCC-TATATT-TT--GGCAAT-AAAG--CT-G----TCATTTT-CAGTTCT-TTGATTAGATT-G-TTCATAAATAATGC---------G---AAAA-AAGAA--GTCA-AATCAAG--TTAACCAT-TACATACTT-ACATCATTTTAATATAGTAAGCTTTTAACA--CCATTTTAGACCACT--TTATA-TT-----------------ACAACCAATATT--GGTAT-CAATGAAC-TTACAGCATGCAGCAA--TATTAAAACA---TGAGTGAAAAATAGC-TTTTGCCCTTTTGATATGGTTTCCCAA--TTTCAGGTTTTCACTCATGTT--AAAACACTT-