lowQualScore : 1 11 1111 11 1111
lowQualScore : 2 11 1 5 1 2 4444 1 2 11 8 1 1 2 2 1 555555555 1 6666666666 777777777 55555555 1 1 6666 1 88888 1 55 11 1 7777 2 1 1 2 11 22 11 1 22 2 1 2222 1 1 4444444 1 1 1 1 22 11 1 1 11 1 2222 5
lowQualScore : . .. . . . . .... . . .. . . . . . . ......... . .......... ......... ........ . . .... . ..... . .. .. . .... . . . . .. .. .. . .. . . .... . . ....... . . . . .. .. . . .. . .... .
lowQualScore : 9 99 3 3 3 7 7777 3 5 77 3 1 1 3 3 1 666666666 1 0000000000 111111111 11111111 1 1 3333 1 00000 1 66 44 1 6666 3 1 1 3 66 77 66 1 88 4 2 5555 2 2 9999999 2 2 2 3 11 88 3 3 88 3 5555 1
consensus : TATATACCA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-CTG-GTAT-T-TT-T--A--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-AC-ACA--TC-AA-T--T-TTGAAG--AAAAACAA
Reference ( gi|13 ) : TATTTACCA--AA-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----CC-AGTT-TAGAAAG-AA-AT---TA-CTG-GTAT-T-TG-T--A--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-AC-ACA--TC-AA-T--T-TTGAAG--GGAAATAA
gi|6 : TATATACCA--AA-A-T-GA-T----CAA-AA-G--TCAT-A-T-TTT-A-ATGAATTAAACTTTT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-CTG-GTAA-T-TT-T--A--AA-CAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-AATC-AC-ACA--TC-AT-T--T-TTGACG--AAAAA
gi|23 : gTATATACTA--AA-A-T-GA-T----AAA----G--TAAT-A-T-TCT-A-ATGAA--------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-A----TA-CTG-TTAT-T-T--T--A--AC-AAC--ATCCG-A-T----GGA--A---------T-TC-A-CATC-AC-ACATTTC-AA-T--T-TTGACG--AAAAAa
gi|24 : TATACACCA--AA-A-T-GA-T----A----------------T-TTT-G-ATGG---------TT-T----------A---------A--------A-GC-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-TTG-GTAT-T-TG-T--A--AT-AAC--ATCCG-A-T----TGAT-A-T-----T-T-TC-A-CATC-AA-AAA--TA-AA-T--T-TTG-AC--GAAAACAAa
gi|33 : cgTATATACCA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------AAACTTTTTAA--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-CTG-GTAA-T-TT-T--A--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-tca
gi|21 : TATATATAA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------G---------A--------A-TT-GA----TTTT-A----TC-CGTT-AAGAAAG-TA-AA---TA-CTG-GTATAT-TT-T--A--AT-AAT--ATTCG-A-T----GGAT-A-C-----T-G-TT-A-CACC-AC-TCT--TC-AA-T--T-TTGAAG--
gi|20 : TATATACCA--GG-A-T-GA-T----GGA-AT-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA----TTTT-A----TT-AGTT-ACGAAAG-----TTTGTA-CTG-GTAT-T-TT-T--A--AC-AAT--ATTCA-A-T----TGAT-A-T-----C-T-TT-A-CATC-AT-ACA--TC-AA-T--T-TAGAA----GAAATaa
gi|8 : TATATACCA--AA-A-T-GA-T----AAA-A--G--TAAT-A-T-TT--G-ATGG---------TT-T----------A---------A--------A-GT-GA----TTT--A----TC-AGTT-AAGAAAG-GA-AA---AA-CTG-GTAT-T-TG-T--A--AT-AAC--ATCCGTT-T----TGA--A-T-----T-T-TC-A-CATC-AA-ACA--TA-AA-TGAT-TGGACG--AAAAACAA
gi|11 : TATATACCA--AA-A-T-GA-T----AAA-AA-G--TAAT-A-TGTTT-G-ATTG---------TT-A----------AC--------A--------A-GT-GGAT--TTTT-G----TC-AGTT-AAGAAAG-AA-AA---TAACTG-GT---T-TG-T--A--AT-AG---ATTCG-A-T----TCAT-A-T-----T-T-TC-A-CATC-AA-ACA--TA-AA-T--T-TTGACG--AAAAAtcaat
gi|2 : TATATACCA--AA-T-T-GA-T----AAA-AA-A--TCAC-A-T-TTT-A-ATGA---------TT-T----------A---------A--------A-GT-TA----TTTT-A----TC-AGatca
gi|4 : cgTATTACCCA--AA-A-T-TA-T----AAA-AAAG--TCAT-A-T-TTTTA-ATGG---------TT-T----------TTT-------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAATA-AA-A----TA-CTG-GTAT-T-AG-TA-A--AT-AAC--ATCCG-ATT----GAAT-C-T-----TCT-TC-A-CAT--AA-ACA--TA-AA-T--T-TTGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaaagaaaatactggtatttttaacaacatccgatggatattttcaactcccacatcaattttgac
gi|10 : tagTATATACCA--AA-AAT-GA-T----AAA-AAAG--TCAT-A-T-AA--A-ATGA---------TTGT----------A---------A--------A-GT-GA----TTTG-A----TCAAGTT-AAGAAAG-AATAA---TA--TG-GTAT-T-AC-T--A--AC--AC--ATCCA-A-T----GGAT---T-----T-T-TCAA-CATC-ACAACA--TC-AA-T--T-T---AA--CGAAATAAcaaaaacaatcaata
gi|43 : TATTTACCA--GA-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------N-Gatt
gi|14 : gATATACCA--AA-A-T-GA-T----AAA-AA-G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GC-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-AT---TA-CTC-ATAT-T-TA-T--A--AC-AAC--ATCCG-G-C----TGAT-A-T-----T-T-TC-A-CACC-AT-ATA--TC-AA-T--T-TTGACG--AAAAAAAAcat
gi|15 : ATATAGCA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA----TTTT-A----TT-AGTT-AATAAAG-TA-TA---TA-CTG-GTAT-T-TT-T--A--AC-AAT--ATCCA-A-T----GGAT-A-T-----A-T-TC-A-CATC-AT-ACA--TC-AG-T--T-TAGAAG--AAAAAa
gi|25 : ATATACCA--AA-AAT-GA-------AA-AA-G--TCAT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------AAGT-GA----TTTT-A----TC-AGTT-AAGAAAA-AA-A-----A-CTG-GTAT-C-TG-T--A--AT-AAC--ATCCG-A-T----TGAT-A-T-----T-T-TC-A-CA---GC-ATA--TCAAA-T--T-TTGAAagtc
gi|16 : ATATACCA--AC-A-T-GA-T----AAA-AA-T--TCAT-A-A-TTT-G-GTGA---------TT-T----------A---------A--------A-TT-GAATTTTTTT-A----C----TT-CAGAAA--AT-ATA--TA-CTG-GTAT-T-TT-T--A--AC-AAT--ATCCA-A-T----GGAT-A-T-----C-T-TC-G-CATC-AT-GCA--TC-AA-T--T-TAGAAG--AAAAAtca
gi|26 : ATATACCA--AA-AAT-GA-------AA-AA-G--TCAT-A-TGTTT-G-ATG----------TT-T----------A---------A--------A-GT-GA----TTTTAA----TC-AGTT-AAGAAGA-AA-AT---AA-CTG-GTAT-C-TG-T-----AT-AAC--ATCCG-A-T----TGAT-A-T-----TCT-TC-A-CAGC-AT-A-----C-AA-T--T-TTGAAagt
gi|36 : ATATACCA--AA-A-TTAA-T----AAA-AA-G--TCAT-AAT-TTT-A-ATGA---------TT-TTAAACTTTTTA---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-CTG-GTAA-T-TT-T--A--AC-tca
gi|34 : TTACCA--AA-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------A---------ACTTTTTAAA-GTTGA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-CTG-GTAA-T-T--T--A--A--AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-
gi|12 : cgtaTACCA--AA-A-T-GA-T----AAA-CA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-TA-AA---TA-CTG-GTAT-T-TT-T--A--AC-AAT--ATCTG-A-T----GGAT-A-C-----C-T-TT-A-CATC-AC-ATA--GC-AA-T--T-TTGAAG--AAAAA
gi|17 : taTACCA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA----TTTT-A----TC-AGTT-AAGAAAG-AA-A----TA-TCG-GTAT-T-TT-T--A--AT-AGC--ATCCG-A-T----TGAT-A-C-----T-T-TC-A-CATC-AA-ACA--T--AA-T--T-TTG-AC--GAAAACAAaatcaa
gi|1 : tgtaTACCA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-TCG-GTAT-T-TT-T--A--AT-AGC--ATCCG-A-T----TGATGA-T-----T-TGTC-A-CATC-AA-ACA--TA-AA-T--TATTGAtc
gi|7 : tgtaTACCATAAA-A-T-GT-T----AAA-A--G--CCATTA-T-TTT-G-GTGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-TA-AA---CA-CTG-GTAT-T-TT-A--A--AC-AAC--ATCCG-A-T----GGAT-A-C-----C-C-TC-A-CAGC-AC-ACA--TC-AA-T--T-cgaacacaacagcagacaatatctctatggccggcccactcttgaaaaatccttgtgaaaatccaacgactacaatagggtactgttacatcagactaaatcgtcctccaacttattatgtgct
gi|18 : ataaaTATCA--AA-A-T-GA-T----AAA-AA-G--TCAT-A-A-TTT-G-ATTA---------GT-G----------A---------A--------A-AT-GA----TTTA-A----TC-AGTT-AAGAAAG-TA-TA---TA--TG-GTAT-T-TT-T--A--AC-AAT--ATCCG-A-T----GGAT-A-TCTTAGC-T-TC-A-CATC-AT-ACA--TC-AA-C--T-TTGAA-----AAACAAaaaaacaaaaacaaaa
gi|5 : TACCC--AA-A-T-GA-TTAAAAAA-AA-GGGTCGT-A-T-TTT-C-ATTA---------TT-T----------A---------G--------A-AT-GAA---GTTT-AAAATTC-AGTT-AAGAAAT-AT-AT----A-CTG-GTAT-T-TC-T--A--AC-A-T--GTCCG-A-T----GGAT-A-T-----CAT-GC-A-TATC-AT-ACA--TC-AATT--T-TTGAAG--GGGAAtc
gi|9 : taACCA--AA-A-T-GA-T----AAA-AA-G--T--T-A-T-TTT-G-ATGA---------TT-T--------------------A--------A-GT-GA-----TTT-A----TC-AGTT-TAGAAAGTAA-AA---TACCTG-GTAT-TGTT-T--A--AC-AAC--ATCCG-A------GAAT-A-C-----A-T-TC-A-CATC-AT-ACA--TC-AA-T--T-TTGACG--GAAAAaagt
gi|3 : tatataACCA--AACACT-GA-T----AAA-AA-G--TCAT-A-T-TTG-A-ATGG---------CT-T----------A---------AG-------A-GC-GAT---TTTT-A----TC-AGTT-AAAACAG-AA-AA---TA-CTGTGTAT-TCTGTT--AATAC-AACCAATCCACA-TTTGAAAAT-A-T-----T-T-TC-A-aattcaat
gi|22 : ggtatcacA--AA-A-T--A-TCC--AAATAA-A--TAAT-A-T-TT--A-ATGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAG-AAG-AA-AA---TA-CTT-GTAT-T-T--TAAA--ACAAAC--ATCCG-A-T-----GAT-A-T-----T-T-TC-A-CATC-AC-A-A--TC-AA-T--T-TTGAactattcaaatacacattgtgacgaaacatcata
gi|27 : gat--AA-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TT-AGTT-AAGAAAG-TA-AT---TA-CTG-GTAT-T-TT-A--A--AG-AAT--GACCT-A-T----GCAT-A-C-----C-T-TC-A-TATC-AC-ACA--TC-AA-T--T-TTGAAGA-AGAAAcaaaaaaaat
gi|19 : A-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTTTA-ATTA---------TT-T----------A---------A--------A--T-G-----TTTT-A----TC-AGTT-AAGAAAG-AA-AA---TA-CTG-GTAT-T-TT-T--A--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-ACCATC-AC-ACA--TC-AA-T--T-TTGAa
gi|28 : tatatagcggaatAA-AA-G----AT-A-T-TTT-GTATGG---------TT-TT---------A---------A--------A-GC-TA----TTT--A----TC-AGTTATAGAAAG-AA-AT----A--TG-GTAT-T-TG-T--A--AT-AACA-ATCCG-A-T----TGAT-ATT-----T-T-TC-A-CATCAAA-ACA--TA-AA-T--T-TTG-AC--GAAAACAAcgaa
gi|32 : -G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-AGTT-AAGAAAG-TA-AA---TA-CTG-GTAT-T-TT-T--A--AC-AAT--ATCCG-A-T----GGAT-A-C-----C-A-TC-A-CATC-AC-ACA--TC-AA-T--T-TTGAAGA-AGAAAatcca
gi|29 : AT-A-T-TTT-G-ATTA---------TT-T----------A---------A--------A-GT-GA----TTTT-A----TC-CATT-TAGAAAG-AA-AA---TA-CTG-GTAT-T-TG-T--G--AC-AAC--ATCCG-A-T----GAAT-A-T-----T-T-TC-A-CATC-AC-ACA--TC-AA-T--T-TTGACG--AAAAAaa
gi|35 : AT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-TA----TTTT-A----TT-AGTT-AAGAAAG-TA-TA---TA-CCG-GTGT-C-TT-T--A--AC-AAT--ATCCA-A-T----GGAT-A-T-----C-T-TC-A-CATC-AT-ACA--TC-AA-T--T-TAGAAGA-AGAAAaatcaata
gi|31 : cT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-TT-GA----TTTT-A----TT-TATT-AAGAAAG-TA-TA---TA-CTG-GTAT-T-TC-T--A--AC-AAT--ATCCA-A-T----GAAT-A-T-----A-T-TC-A-CATC-AT-ACA--TC-AA-T--T-TAGAAG--AAAAAgtc
gi|30 : -ATGA---------TT-T----------A---------A--------A-GT-GC----TTTT-A----TC-AGTT-AAGAAAG-TA-AA---TA-CTG-GTAT-T-TT-G--A--AC-AAT--ATCTG-A-T----GGAT-A-C-----C-T-TC-A-CATC-AC-ATG--TA-AA-T--T-TTGAAGAAAGAAAAAAagtcaat
gi|2 : AGAAAG-AA-AA---TA-CTG-GTAT-T-TT-T--A--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-ACTC-CC-ACA--TC-AA-T--T-TTGAaaatcaatat
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|37 ): CAATGGCGGCCATCTTTGGAAAATTCCTTGAAATCGGAAGATAATAATACTTAATAGATAAATCTTGCTGAAAACAA
Unaligned ( gi|38 ): AATTTGGCGGCCTCTTGGAAAAATCCTTGAAATCTAAGATAATAATACTCATAGATCTAAAACTTGCTCAACTA
Unaligned ( gi|39 ): TCAATGGCGGCCATCTTGGAAAATCCTTGAAATCTAAGATAATAATACTTAATAGACTAAATCTTG
Unaligned ( gi|40 ): TTCAATGGCGGCCATCTTGGAAAGTCATTGAAATCTAAGATAATGATACT
Unaligned ( gi|41 ): AATGCGGGCCATCTTGGAATAATCTCCGTTGAAAAATATACAGATAA
Unaligned ( gi|42 ): AACTTAATTGCATCATAACATTTAATATCATTTAGGTCATGTTAAAA
Unaligned ( gi|44 ): AAATAAAATCCTTACTGTGTAACGAAAAAGACTAAACTTGCTCAAA
Unaligned ( gi|45 ): ATTCAATATCGGCCATCTTGTAAAATCCTTGAAATCTAAGAAA
Unaligned ( gi|46 ): TCAATGGCGGCCATCTTGGAAAATCCTTGGACTCTAAGATA
Unaligned ( gi|47 ): AATTCAATGGCGCAATCTTGCGAAAGAATCCTTGAAAT
Unaligned ( gi|48 ): ATGGCCGGCCATCTTGGCATAGCCTTGAATCTAAGAT
Alignments
lowQualScore : 1 1 11 11 1 1 5 1 2 4444 1 2 11 1 1 2 2 1 555555555 1 5555555555 666666666 55555555 1 1 33 2 2222 1 1 55 1 1 2 1 1 2 11 1 11 1 22 2 1 2222 1 1 4444444 1 1 1 1 3333 11 1 1 1 1 11 1 4444
lowQualScore : . . .. .. . . . . . .... . . .. . . . . . ......... . .......... ......... ........ . . .. . .... . . .. . . . . . . .. . .. . .. . . .... . . ....... . . . . .... .. . . . . .. . ....
lowQualScore : 5 4 88 88 3 3 2 3 6 5555 2 4 77 1 1 2 2 1 444444444 1 8888888888 999999999 00000000 1 1 88 2 4444 1 1 33 1 1 2 1 1 2 55 1 55 1 77 3 1 4444 1 1 5555555 1 1 2 2 0000 77 2 2 2 2 77 2 9999
consensus : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-A-T--T-TTGAN---GAAAAACAA
Reference ( family-510 ) : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-A-T--T-TTGAA---GAAAAACAA
gi|1 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--ATCCG-A-T----TGATGA-T-----T-TGTC-A-CATC-A--A-ACA--T-A-A-A-T--TATTGAC---GAA
gi|10 : TAT-ATA-CC--A--A-A-AAT-GA-T----AAA-AAAG--TCAT-A-T-AA--A-ATGA---------TTGT----------A---------A--------A-GT-GA--TTTG-A----TCAAGTTA-AGAAAG-AATAAT-A--TG-GTAT-T-A--C-TA--AC--AC--ATCCA-A-T----GGAT---T-----T-T-TCAA-CATC-A--CAACA--T-C-A-A-T--T-Tcacaacagcagacaatatctctatggccggcccactcttgaaaaatccttgtgaaaatccaacgactacaatagggtactgttacatcagactaaatcgtcctccaacttattatgtgct
gi|11 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-TGTTT-G-ATTG---------TT-A----------AC--------A--------A-GT-GGATTTTT-G----TCA-GTTA-AGAAAG-AA-AAT-AACTG-GT---T-T--G-TA--AT-AG---ATTCG-A-T----TCAT-A-T-----T-T-TC-A-CATC-A--A-ACA--T-A-A-A-T--T-TTGAC---GAAAAAaacgaaataaatt
gi|12 : T-ATA-CC--A--A-A-A-T-GA-T----AAA-CA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCTG-A-T----GGAT-A-C-----C-T-TT-A-CATC-A--C-ATA--G-C-A-A-T--T-TTGAA---GAAAAAatca
gi|13 : TAT-TTA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----CCA-GTTT-AGAAAG-AA-ATT-A-CTG-GTAT-T-T--G-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-A-T--T-TTGAA---GGGAAATAAaatcaa
gi|14 : AT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-ATT-A-CTC-ATAT-T-T--A-TA--AC-AAC--ATCCG-G-C----TGAT-A-T-----T-T-TC-A-CACC-A--T-ATA--T-C-A-A-T--T-TTGAC---GAAAAAAAA
gi|15 : AT-ATA-GC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-ATAAAG-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCCA-A-T----GGAT-A-T-----A-T-TC-A-CATC-A--T-ACA--T-C-A-G-T--T-TAGAA---GAAAAAa
gi|16 : AT-ATA-CC--A--A-C-A-T-GA-T----AAA-AA-T--TCAT-A-A-TTT-G-GTGA---------TT-T----------A---------A--------A-TT-GAA-TTTT-T----TTA-CTTC-AGAAAA-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCCA-A-T----GGAT-A-T-----C-T-TC-G-CATC-A--T-GCA--T-C-A-A-T--T-TAGAA---GAAAAAagtc
gi|17 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--ATCCG-A-T----TGAT-A-C-----T-T-TC-A-CATC-A--A-ACA--T---A-A-T--T-TTGAC---G-AAAACAAagt
gi|18 : TA-TC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-A-TTT-G-ATTA---------GT-G----------A---------A--------A-AT-GA--TTTA-A----TCA-GTTA-AGAAAG-TA-TAT-A--TG-GTAT-T-T--T-TA--AC-AAT--ATCCG-A-T----GGAT-A-TCTTAGC-T-TC-A-CATC-A--T-ACA--T-C-A-A-C--T-TT------GAAAAACAAtc
gi|19 : TAT-ATA-GCGGA--ATA-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTTTA-ATTA---------TT-T----------A---------A--------A--T-G---TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-ACCATC-A--C-ACA--T-C-A-A-T--T-TTGAC---GAAtc
gi|2 : TAT-ATA-CC--A--A-A-T-T-GA-T----AAA-AA-A--TCAC-A-T-TTT-A-ATGA---------TT-T----------A---------A--------A-GT-TA--TTTT-A----TCA-G
gi|2 : cgTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-ACTC-C--C-ACA--T-C-A-A-T--T-TTGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaaagaaaatactggtatttttaacaacatccgatggatattttcaactcccacatcaattttgac
gi|20 : cgtatataccaaattgataaaaaatcacattttaatgatttaaagttattttatcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAT-ATA-CC--A--G-G-A-T-GA-T----GGA-AT-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-CGAAAG-TT-TGT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATTCA-A-T----TGAT-A-T-----C-T-TT-A-CATC-A--T-ACA--T-C-A-A-T--T-TAGAA---GAAAc
gi|21 : TAT-ATA-TA--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------G---------A--------A-TT-GA--TTTT-A----TCC-GTTA-AGAAAG-TA-AAT-A-CTG-GTATAT-T--T-TA--AT-AAT--ATTCG-A-T----GGAT-A-C-----T-G-TT-A-CACC-A--C-TCT--T-C-A-A-T--T-TTGAA---GAAta
gi|22 : --A--A-A-A-T--A-TCC--AAATAA-A--TAAT-A-T-TT--A-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAG-AA-AAT-A-CTT-GTAT-T-T--TAAA--ACAAAC--ATCCG-A-T-----GAT-A-T-----T-T-TC-A-CATC-A--C-A-A--T-C-A-A-T--T-TTGAC---AAAAAA
gi|23 : gatTAT-ATA-CT--A--A-A-A-T-GA-T----AAA----G--TAAT-A-T-TCT-A-ATGAA--------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-CTG-TTA--T-T--T-TA--AC-AAC--ATCCG-A-T----GGA--A---------T-TC-A-CATC-A--C-ACATTT-C-A-A-T--T-TTGAC---GAAAAAaat
gi|24 : TAT-ACA-CC--A--A-A-A-T-G-------------------AT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TTG-GTAT-T-T--G-TA--AT-AAC--ATCCG-A-T----TGAT-A-T-----T-T-TC-A-CATC-A--A-AAA--T-A-A-A-T--T-TTGAC---G-AAAACAAa
gi|25 : cgAT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------AAGT-GA--TTTT-A----TCA-GTTA-AGAAAA-AA-AA----CTG-GTAT-C-T--G-TA--AT-AAC--ATCCG-A-T----TGAT-A-T-----T-T-TC-A-CA---G--C-ATA--T-CAA-A-T--T-TTGAA---tca
gi|26 : AT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-TGTTT-G-ATG----------TT-T----------A---------A--------A-GT-GA--TTTTAA----TCA-GTTA-AG-AAG-AA-AATAA-CTG-GTAT-C-T--G-T---AT-AAC--ATCCG-A-T----TGAT-A-T-----TCT-TC-A-CAGC-A--T-A------C-A-A-T--T-TTGAA---tca
gi|27 : --A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TTA-GTTA-AGAAAG-TA-ATT-A-CTG-GTAT-T-T--T-AA--AG-AAT--GACCT-A-T----GCAT-A-C-----C-T-TC-A-TATC-A--C-ACA--T-C-A-A-T--T-TTGAA---GAAGAAtca
gi|28 : AA-AA-G----AT-A-T-TTT-GTATGG---------TT-TT---------A---------A--------A-GC-TA--TTT--A----TCA-GTTATAGAAAG--A-AAT-A--TG-GTAT-T-T--G-TA--AT-AACA-ATCCG-A-T----TGAT-ATT-----T-T-TC-A-CATCAA--A-ACA--T-A-A-A-T--T-TTGAC---G-AAAACAAaa
gi|29 : AT-A-T-TTT-G-ATTA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCC-ATTT-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--G-TG--AC-AAC--ATCCG-A-T----GAAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-A-T--T-TTGAC---GAAAAAatcca
gi|3 : TATCACA-CC--A--A-ACACT-GA-T----AAA-AA-G--TCAT-A-T-TTG-A-ATGG---------CT-T----------A---------AG-------A-GC-GA--TTTTTA----TCA-GTTA-AAACAG-AA-AAT-A-CTGTGTAT-T-CTGT-TAATAC-AACCAATCCACA-TTTGAAAAT-A-T-----T-T-TC-A--ACT-ATTC-AAA--TAC-ACA-T--T-GTGAC---GAAAaatcaata
gi|30 : gg-ATGA---------TT-T----------A---------A--------A-GT-GC--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-GA--AC-AAT--ATCTG-A-T----GGAT-A-C-----C-T-TC-A-CATC-A--C-ATG--T-A-A-A-T--T-TTGAA---GAAAGAAAAcatcata
gi|31 : T-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-TT-GA--TTTT-A----TTT-ATTA-AGAAAG-TA-TAT-A-CTG-GTAT-T-T--C-TA--AC-AAT--ATCCA-A-T----GAAT-A-T-----A-T-TC-A-CATC-A--T-ACA--T-C-A-A-T--T-TAGAA---GAAAAAaaaaatcaatat
gi|32 : -G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCCG-A-T----GGAT-A-C-----C-A-TC-A-CATC-A--C-ACA--T-C-A-A-T--T-TTGAA---GAAGAAAAAagtcaat
gi|33 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------AAACTTTTTAA--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-
gi|34 : TAT--TA-CC--A--A-A-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------A---------ACTTTTTAAA-GTTGA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTA--A-T--T-TA--A--AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-
gi|35 : cgCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-TA--TTTT-A----TTA-GTTA-AGAAAG-TA-TAT-A-CCG-GTGT-C-T--T-TA--AC-AAT--ATCCA-A-T----GGAT-A-T-----C-T-TC-A-CATC-A--T-ACA--T-C-A-A-T--T-TAGAA---GAAGAA
gi|36 : AT-ATA-CC--A--A-A-A-TTAA-T----AAA-AA-G--TCAT-AAT-TTT-A-ATGA---------TT-TTAAACTTTTTA---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-agtc
gi|4 : -CC--A--A-A-A-T-TA-T----AAA-AAAG--TCAT-A-T-TTTTA-ATGG---------TT-T----------TTT-------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAT-AA-AAT-A-CTG-GTAT-TAG--T-AA--AT-AAC--ATCCG-ATT----GAAT-C-T-----TCT-TC-A-CAT--A--A-ACA--T-A-A-A-T--T-TTG-A---CAAAAACAA
gi|43 : tagtattacTAT-TTA-CC--A--G-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------N-Gtcaata
gi|5 : gT-ATA-CC--C--A-A-A-T-GA-TTAAAAAA-AA-GGGTCGT-A-T-TTT-C-ATTA---------TT-T----------A---------G--------A-AT-GAA-GTTT-AAAATTCA-GTTA-AGAAAT-AT-A-T-A-CTG-GTAT-T-T--C-TA--AC--AT--GTCCG-A-T----GGAT-A-T-----CAT-GC-A-TATC-A--T-ACA--T-C-A-ATT--T-TTGAAGGGGAAAAcat
gi|6 : TAT-ATA-CC--A--A-A-A-T-GA-T----CAA-AA-G--TCAT-A-T-TTT-A-ATGAATTAAACTTTT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AA-CAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-AATC-A--C-ACA--T-C-A-T-T--T-TTGAC---GAAAAAgt
gi|7 : gTAA-ATA-CC--ATAA-A-A-T-GT-T----AAA-A--G--CCATTA-T-TTT-G-GTGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAC-A-CTG-GTAT-T-T--T-AA--AC-AAC--ATCCG-A-T----GGAT-A-C-----C-C-TC-A-CAGC-A--C-ACA--T-C-A-A-T--T-AAAAA---CAAAAACAAa
gi|8 : aTAT-ATA-CC--A--A-A-A-T-GA-T----AAA-A--G--TAAT-A-T-TT--G-ATGG---------TT-T----------A---------A--------A-GT-GA--TTT--A----TCA-GTTA-AGAAAG-GA-AAA-A-CTG-GTAT-T-T--G-TA--AT-AAC--ATCCGTT-T----TGA--A-T-----T-T-TC-A-CATC-A--A-ACA--T-A-A-A-TGAT-TGGAC---GAAAAACAAaa
gi|9 : TAT-ATAACC--A--A-A-A-T-GA-T----AAA-AA-G--T--T-A-T-TTT-G-ATGA---------TT-T--------------------A--------A-GT-GA---TTT-A----TCA-GTTT-AGAAAGTAA-AAT-ACCTG-GTAT-TGT--T-TA--AC-AAC--ATCCG-A------GAAT-A-C-----A-T-TC-A-CATC-A--T-ACA--T-C-A-A-T--T-TTGAC---GGAAAAtcaat
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|37 ): CAATGGCGGCCATCTTTGGAAAATTCCTTGAAATCGGAAGATAATAATACTTAATAGATAAATCTTGCTGAAAACAA
Unaligned ( gi|38 ): AATTTGGCGGCCTCTTGGAAAAATCCTTGAAATCTAAGATAATAATACTCATAGATCTAAAACTTGCTCAACTA
Unaligned ( gi|39 ): TCAATGGCGGCCATCTTGGAAAATCCTTGAAATCTAAGATAATAATACTTAATAGACTAAATCTTG
Unaligned ( gi|40 ): TTCAATGGCGGCCATCTTGGAAAGTCATTGAAATCTAAGATAATGATACT
Unaligned ( gi|41 ): AATGCGGGCCATCTTGGAATAATCTCCGTTGAAAAATATACAGATAA
Unaligned ( gi|42 ): AACTTAATTGCATCATAACATTTAATATCATTTAGGTCATGTTAAAA
Unaligned ( gi|44 ): AAATAAAATCCTTACTGTGTAACGAAAAAGACTAAACTTGCTCAAA
Unaligned ( gi|45 ): ATTCAATATCGGCCATCTTGTAAAATCCTTGAAATCTAAGAAA
Unaligned ( gi|46 ): TCAATGGCGGCCATCTTGGAAAATCCTTGGACTCTAAGATA
Unaligned ( gi|47 ): AATTCAATGGCGCAATCTTGCGAAAGAATCCTTGAAAT
Unaligned ( gi|48 ): ATGGCCGGCCATCTTGGCATAGCCTTGAATCTAAGAT
Alignments
lowQualScore : 1 1 11 11 1 1 5 1 2 4444 1 2 11 1 1 2 2 1 555555555 1 5555555555 666666666 55555555 1 1 33 2 2222 1 1 55 1 1 2 1 1 2 11 1 11 1 22 2 1 2222 1 1 4444444 1 1 1 1 3333 11 1 1 1 11 1 2222 1
lowQualScore : . . .. .. . . . . . .... . . .. . . . . . ......... . .......... ......... ........ . . .. . .... . . .. . . . . . . .. . .. . .. . . .... . . ....... . . . . .... .. . . . .. . .... .
lowQualScore : 5 4 88 88 3 3 2 3 6 5555 2 4 77 1 1 2 2 1 444444444 1 8888888888 999999999 00000000 1 1 88 2 4444 1 1 33 1 1 2 1 1 2 55 1 55 1 77 3 1 4444 1 1 5555555 1 1 2 2 0000 77 2 2 2 77 2 6666 5
consensus : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-AT--T-TT----GACGAAAAACAA
Reference ( family-510 ) : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-AT--T-TT----GANGAAAAACAA
gi|1 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--ATCCG-A-T----TGATGA-T-----T-TGTC-A-CATC-A--A-ACA--T-A-A-AT--TATT----GACGAA
gi|10 : TAT-ATA-CC--A--A-A-AAT-GA-T----AAA-AAAG--TCAT-A-T-AA--A-ATGA---------TTGT----------A---------A--------A-GT-GA--TTTG-A----TCAAGTTA-AGAAAG-AATAAT-A--TG-GTAT-T-A--C-TA--AC--AC--ATCCA-A-T----GGAT---T-----T-T-TCAA-CATC-A--CAACA--T-C-A-A---T-TT----AACGAAAcacaacagcagacaatatctctatggccggcccactcttgaaaaatccttgtgaaaatccaacgactacaatagggtactgttacatcagactaaatcgtcctccaacttattatgtgct
gi|11 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-TGTTT-G-ATTG---------TT-A----------AC--------A--------A-GT-GGATTTTT-G----TCA-GTTA-AGAAAG-AA-AAT-AACTG-GT---T-T--G-TA--AT-AG---ATTCG-A-T----TCAT-A-T-----T-T-TC-A-CATC-A--A-ACA--T-A-A-AT--T-TT----GACGAAAAAtaaatt
gi|12 : T-ATA-CC--A--A-A-A-T-GA-T----AAA-CA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCTG-A-T----GGAT-A-C-----C-T-TT-A-CATC-A--C-ATA--G-C-A-AT--T-TT----GAAGAAAAAatca
gi|13 : TAT-TTA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----CCA-GTTT-AGAAAG-AA-ATT-A-CTG-GTAT-T-T--G-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-AT--T-TT----GAAGGGAAATAAaatcaa
gi|14 : AT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-ATT-A-CTC-ATAT-T-T--A-TA--AC-AAC--ATCCG-G-C----TGAT-A-T-----T-T-TC-A-CACC-A--T-ATA--T-C-A-AT--T-TT----GACGAAAAAAAA
gi|15 : AT-ATA-GC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-ATAAAG-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCCA-A-T----GGAT-A-T-----A-T-TC-A-CATC-A--T-ACA--T-C-A-GT--T-TA----GAAGAAAAAa
gi|16 : AT-ATA-CC--A--A-C-A-T-GA-T----AAA-AA-T--TCAT-A-A-TTT-G-GTGA---------TT-T----------A---------A--------A-TT-GAA-TTTT-T----TTA-CTTC-AGAAAA-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCCA-A-T----GGAT-A-T-----C-T-TC-G-CATC-A--T-GCA--T-C-A-AT--T-TA----GAAGAAAAAagtc
gi|17 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--ATCCG-A-T----TGAT-A-C-----T-T-TC-A-CATC-A--A-ACA--T---A-AT--T-TT----GACG-AAAACAAagt
gi|18 : TA-TC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-A-TTT-G-ATTA---------GT-G----------A---------A--------A-AT-GA--TTTA-A----TCA-GTTA-AGAAAG-TA-TAT-A--TG-GTAT-T-T--T-TA--AC-AAT--ATCCG-A-T----GGAT-A-TCTTAGC-T-TC-A-CATC-A--T-ACA--T-C-A-AC--T-TT-------GAAAAACAAtc
gi|19 : TAT-ATA-GCGGA--ATA-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTTTA-ATTA---------TT-T----------A---------A--------A--T-G---TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-ACCATC-A--C-ACA--T-C-A-AT--T-TT----GACGAAtc
gi|2 : TAT-ATA-CC--A--A-A-T-T-GA-T----AAA-AA-A--TCAC-A-T-TTT-A-ATGA---------TT-T----------A---------A--------A-GT-TA--TTTT-A----TCA-G
gi|2 : cgTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-ACTC-C--C-ACA--T-C-A-AT--T-TT----GAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaaagaaaatactggtatttttaacaacatccgatggatattttcaactcccacatcaattttgac
gi|20 : cgtatataccaaattgataaaaaatcacattttaatgatttaaagttattttatcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAT-ATA-CC--A--G-G-A-T-GA-T----GGA-AT-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-CGAAAG-TT-TGT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATTCA-A-T----TGAT-A-T-----C-T-TT-A-CATC-A--T-ACA--T-C-A-AT--T-TA----GAAGAAAc
gi|21 : TAT-ATA-TA--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------G---------A--------A-TT-GA--TTTT-A----TCC-GTTA-AGAAAG-TA-AAT-A-CTG-GTATAT-T--T-TA--AT-AAT--ATTCG-A-T----GGAT-A-C-----T-G-TT-A-CACC-A--C-TCT--T-C-A-AT--T-TT----GAAGAAta
gi|22 : --A--A-A-A-T--A-TCC--AAATAA-A--TAAT-A-T-TT--A-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAG-AA-AAT-A-CTT-GTAT-T-T--TAAA--ACAAAC--ATCCG-A-T-----GAT-A-T-----T-T-TC-A-CATC-A--C-A-A--T-C-A-AT--T-TT----GACAAAAAA
gi|23 : gatTAT-ATA-CT--A--A-A-A-T-GA-T----AAA----G--TAAT-A-T-TCT-A-ATGAA--------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-CTG-TTA--T-T--T-TA--AC-AAC--ATCCG-A-T----GGA--A---------T-TC-A-CATC-A--C-ACATTT-C-A-AT--T-TT----GACGAAAAAaat
gi|24 : TAT-ACA-CC--A--A-A-A-T-G-------------------AT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TTG-GTAT-T-T--G-TA--AT-AAC--ATCCG-A-T----TGAT-A-T-----T-T-TC-A-CATC-A--A-AAA--T-A-A-AT--T-TT----GACG-AAAACAAa
gi|25 : cgAT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------AAGT-GA--TTTT-A----TCA-GTTA-AGAAAA-AA-AA----CTG-GTAT-C-T--G-TA--AT-AAC--ATCCG-A-T----TGAT-A-T-----T-T-TC-A-CA---G--C-ATA--T-CAA-AT--T-TT----GAtca
gi|26 : AT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-TGTTT-G-ATG----------TT-T----------A---------A--------A-GT-GA--TTTTAA----TCA-GTTA-AG-AAG-AA-AATAA-CTG-GTAT-C-T--G-T---AT-AAC--ATCCG-A-T----TGAT-A-T-----TCT-TC-A-CAGC-A--T-A------C-A-AT--T-TT----GAatca
gi|27 : --A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TTA-GTTA-AGAAAG-TA-ATT-A-CTG-GTAT-T-T--T-AA--AG-AAT--GACCT-A-T----GCAT-A-C-----C-T-TC-A-TATC-A--C-ACA--T-C-A-AT--T-TT----GAAGAAGAAatca
gi|28 : AA-AA-G----AT-A-T-TTT-GTATGG---------TT-TT---------A---------A--------A-GC-TA--TTT--A----TCA-GTTATAGAAAG--A-AAT-A--TG-GTAT-T-T--G-TA--AT-AACA-ATCCG-A-T----TGAT-ATT-----T-T-TC-A-CATCAA--A-ACA--T-A-A-AT--T-TT----GACG-AAAACAAaa
gi|29 : AT-A-T-TTT-G-ATTA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCC-ATTT-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--G-TG--AC-AAC--ATCCG-A-T----GAAT-A-T-----T-T-TC-A-CATC-A--C-ACA--T-C-A-AT--T-TT----GACGAAAAAatcca
gi|3 : TATCACA-CC--A--A-ACACT-GA-T----AAA-AA-G--TCAT-A-T-TTG-A-ATGG---------CT-T----------A---------AG-------A-GC-GA--TTTTTA----TCA-GTTA-AAACAG-AA-AAT-A-CTGTGTAT-T-CTGT-TAATAC-AACCAATCCACA-TTTGAAAAT-A-T-----T-T-TC-A--ACT-ATTC-AAA--TAC-ACAT--T-GT----GACGAAAaatcaata
gi|30 : gg-ATGA---------TT-T----------A---------A--------A-GT-GC--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-GA--AC-AAT--ATCTG-A-T----GGAT-A-C-----C-T-TC-A-CATC-A--C-ATG--T-A-A-AT--T-TT----GAAGAAAGAAAAcatcata
gi|31 : T-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-TT-GA--TTTT-A----TTT-ATTA-AGAAAG-TA-TAT-A-CTG-GTAT-T-T--C-TA--AC-AAT--ATCCA-A-T----GAAT-A-T-----A-T-TC-A-CATC-A--T-ACA--T-C-A-AT--T-TA----GAAGAAAAAaaaaatcaatat
gi|32 : -G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--ATCCG-A-T----GGAT-A-C-----C-A-TC-A-CATC-A--C-ACA--T-C-A-AT--T-TT----GAAGAAGAAAAAagtcaat
gi|33 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------AAACTTTTTAA--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-
gi|34 : TAT--TA-CC--A--A-A-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------A---------ACTTTTTAAA-GTTGA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTA--A-T--T-TA--A--AAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-
gi|35 : cgCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-TA--TTTT-A----TTA-GTTA-AGAAAG-TA-TAT-A-CCG-GTGT-C-T--T-TA--AC-AAT--ATCCA-A-T----GGAT-A-T-----C-T-TC-A-CATC-A--T-ACA--T-C-A-AT--T-TA----GAAGAAGAA
gi|36 : AT-ATA-CC--A--A-A-A-TTAA-T----AAA-AA-G--TCAT-AAT-TTT-A-ATGA---------TT-TTAAACTTTTTA---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-agtc
gi|4 : -CC--A--A-A-A-T-TA-T----AAA-AAAG--TCAT-A-T-TTTTA-ATGG---------TT-T----------TTT-------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAT-AA-AAT-A-CTG-GTAT-TAG--T-AA--AT-AAC--ATCCG-ATT----GAAT-C-T-----TCT-TC-A-CAT--A--A-ACA--T-A-A-AT--T-TT----GAC-AAAAACAA
gi|43 : tagtattacTAT-TTA-CC--A--G-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------N-Gtcaata
gi|5 : gT-ATA-CC--C--A-A-A-T-GA-TTAAAAAA-AA-GGGTCGT-A-T-TTT-C-ATTA---------TT-T----------A---------G--------A-AT-GAA-GTTT-AAAATTCA-GTTA-AGAAAT-AT-A-T-A-CTG-GTAT-T-T--C-TA--AC--AT--GTCCG-A-T----GGAT-A-T-----CAT-GC-A-TATC-A--T-ACA--T-C-A-AT--T-TTTGAAGGGGAAAAcat
gi|6 : TAT-ATA-CC--A--A-A-A-T-GA-T----CAA-AA-G--TCAT-A-T-TTT-A-ATGAATTAAACTTTT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AA-CAC--ATCCG-A-T----GGAT-A-T-----T-T-TC-A-AATC-A--C-ACA--T-C-A-TT--T-TT----GACGAAAAAgt
gi|7 : gTAA-ATA-CC--ATAA-A-A-T-GT-T----AAA-A--G--CCATTA-T-TTT-G-GTGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAC-A-CTG-GTAT-T-T--T-AA--AC-AAC--ATCCG-A-T----GGAT-A-C-----C-C-TC-A-CAGC-A--C-ACA--T-C-A-AT--T-AA----AAACAAAAACAAa
gi|8 : aTAT-ATA-CC--A--A-A-A-T-GA-T----AAA-A--G--TAAT-A-T-TT--G-ATGG---------TT-T----------A---------A--------A-GT-GA--TTT--A----TCA-GTTA-AGAAAG-GA-AAA-A-CTG-GTAT-T-T--G-TA--AT-AAC--ATCCGTT-T----TGA--A-T-----T-T-TC-A-CATC-A--A-ACA--T-A-A-ATGAT-TG----GACGAAAAACAAaa
gi|9 : TAT-ATAACC--A--A-A-A-T-GA-T----AAA-AA-G--T--T-A-T-TTT-G-ATGA---------TT-T--------------------A--------A-GT-GA---TTT-A----TCA-GTTT-AGAAAGTAA-AAT-ACCTG-GTAT-TGT--T-TA--AC-AAC--ATCCG-A------GAAT-A-C-----A-T-TC-A-CATC-A--T-ACA--T-C-A-AT--T-TT----GACGGAAAAtcaat
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|37 ): CAATGGCGGCCATCTTTGGAAAATTCCTTGAAATCGGAAGATAATAATACTTAATAGATAAATCTTGCTGAAAACAA
Unaligned ( gi|38 ): AATTTGGCGGCCTCTTGGAAAAATCCTTGAAATCTAAGATAATAATACTCATAGATCTAAAACTTGCTCAACTA
Unaligned ( gi|39 ): TCAATGGCGGCCATCTTGGAAAATCCTTGAAATCTAAGATAATAATACTTAATAGACTAAATCTTG
Unaligned ( gi|40 ): TTCAATGGCGGCCATCTTGGAAAGTCATTGAAATCTAAGATAATGATACT
Unaligned ( gi|41 ): AATGCGGGCCATCTTGGAATAATCTCCGTTGAAAAATATACAGATAA
Unaligned ( gi|42 ): AACTTAATTGCATCATAACATTTAATATCATTTAGGTCATGTTAAAA
Unaligned ( gi|44 ): AAATAAAATCCTTACTGTGTAACGAAAAAGACTAAACTTGCTCAAA
Unaligned ( gi|45 ): ATTCAATATCGGCCATCTTGTAAAATCCTTGAAATCTAAGAAA
Unaligned ( gi|46 ): TCAATGGCGGCCATCTTGGAAAATCCTTGGACTCTAAGATA
Unaligned ( gi|47 ): AATTCAATGGCGCAATCTTGCGAAAGAATCCTTGAAAT
Unaligned ( gi|48 ): ATGGCCGGCCATCTTGGCATAGCCTTGAATCTAAGAT
Alignments
lowQualScore : 1 1 11 11 1 1 5 1 2 4444 1 2 11 1 1 2 2 1 555555555 1 5555555555 666666666 55555555 1 1 33 2 2222 1 1 33 1 1 2 1 1 2 11 1 11 1 11 1 2 1 2222 1 4444444 1 1 1 1 3333 1 11 1 1 1 11 1 0
lowQualScore : . . .. .. . . . . . .... . . .. . . . . . ......... . .......... ......... ........ . . .. . .... . . .. . . . . . . .. . .. . .. . . . .... . ....... . . . . .... . .. . . . .. . .
lowQualScore : 5 4 88 88 3 3 2 3 6 5555 2 4 77 1 1 2 2 1 444444444 1 8888888888 999999999 00000000 1 1 88 2 4444 1 1 99 1 1 2 1 1 2 55 1 55 1 66 1 3 1 4444 1 5555555 1 1 1 2 0000 2 77 2 2 2 77 2 8
consensus : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
Reference ( family-510 ) : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
gi|1 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--A-TCCG-A-T----TGATGAT-----T-TGT-C-A-CATCA--A-A-CA--T-A-A-AT--TATTGACGAA
gi|10 : TAT-ATA-CC--A--A-A-AAT-GA-T----AAA-AAAG--TCAT-A-T-AA--A-ATGA---------TTGT----------A---------A--------A-GT-GA--TTTG-A----TCAAGTTA-AGAAAG-AATAAT-A--TG-GTAT-T-A--C-TA--AC--AC--A-TCCA-A-T----GGAT--T-----T-T-T-CAA-CATCA--CAA-CA--T-C-A-A---T-TTAACGAAAcacaacagcagacaatatctctatggccggcccactcttgaaaaatccttgtgaaaatccaacgactacaatagggtactgttacatcagactaaatcgtcctccaacttattatgtgct
gi|11 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-TGTTT-G-ATTG---------TT-A----------AC--------A--------A-GT-GGATTTTT-G----TCA-GTTA-AGAAAG-AA-AAT-AACTG-GT---T-T--G-TA--AT-AG---A-TTCG-A-T----TCAT-AT-----T-T-T-C-A-CATCA--A-A-CA--T-A-A-AT--T-TTGACGAAAAAtaaatt
gi|12 : T-ATA-CC--A--A-A-A-T-GA-T----AAA-CA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCTG-A-T----GGAT-AC-----C-T-T-T-A-CATCA--C-A-TA--G-C-A-AT--T-TTGAAGAAAAAatca
gi|13 : TAT-TTA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----CCA-GTTT-AGAAAG-AA-ATT-A-CTG-GTAT-T-T--G-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGAAGGGAAATAAaatcaa
gi|14 : AT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-ATT-A-CTC-ATAT-T-T--A-TA--AC-AAC--A-TCCG-G-C----TGAT-AT-----T-T-T-C-A-CACCA--T-A-TA--T-C-A-AT--T-TTGACGAAAAAAAA
gi|15 : AT-ATA-GC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-ATAAAG-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-GT--T-TAGAAGAAAAAa
gi|16 : AT-ATA-CC--A--A-C-A-T-GA-T----AAA-AA-T--TCAT-A-A-TTT-G-GTGA---------TT-T----------A---------A--------A-TT-GAA-TTTT-T----TTA-CTTC-AGAAAA-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----C-T-T-C-G-CATCA--T-G-CA--T-C-A-AT--T-TAGAAGAAAAAagtc
gi|17 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--A-TCCG-A-T----TGAT-AC-----T-T-T-C-A-CATCA--A-A-CA--T---A-AT--T-TTGACG-AAAACAAagt
gi|18 : TA-TC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-A-TTT-G-ATTA---------GT-G----------A---------A--------A-AT-GA--TTTA-A----TCA-GTTA-AGAAAG-TA-TAT-A--TG-GTAT-T-T--T-TA--AC-AAT--A-TCCG-A-T----GGAT-ATCTTAGC-T-T-C-A-CATCA--T-A-CA--T-C-A-AC--T-TT---GAAAAACAAtc
gi|19 : TAT-ATA-GCGGA--ATA-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTTTA-ATTA---------TT-T----------A---------A--------A--T-G---TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-ACCATCA--C-A-CA--T-C-A-AT--T-TTGACGAAtc
gi|2 : TAT-ATA-CC--A--A-A-T-T-GA-T----AAA-AA-A--TCAC-A-T-TTT-A-ATGA---------TT-T----------A---------A--------A-GT-TA--TTTT-A----TCA-G
gi|2 : cgTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-ACTCC--C-A-CA--T-C-A-AT--T-TTGACgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaaagaaaatactggtatttttaacaacatccgatggatattttcaactcccacatcaattttgac
gi|20 : cgtatataccaaattgataaaaaatcacattttaatgatttaaagttattttatcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAT-ATA-CC--A--G-G-A-T-GA-T----GGA-AT-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-CGAAAG-TT-TGT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TTCA-A-T----TGAT-AT-----C-T-T-T-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAA
gi|21 : TAT-ATA-TA--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------G---------A--------A-TT-GA--TTTT-A----TCC-GTTA-AGAAAG-TA-AAT-A-CTG-GTATAT-T--T-TA--AT-AAT--A-TTCG-A-T----GGAT-AC-----T-G-T-T-A-CACCA--C-T-CT--T-C-A-AT--T-TTGAAGAAta
gi|22 : --A--A-A-A-T--A-TCC--AAATAA-A--TAAT-A-T-TT--A-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAG-AA-AAT-A-CTT-GTAT-T-T--TAAA--ACAAAC--A-TCCG-A-T-----GAT-AT-----T-T-T-C-A-CATCA--C-A--A--T-C-A-AT--T-TTGACAAAAAA
gi|23 : gatTAT-ATA-CT--A--A-A-A-T-GA-T----AAA----G--TAAT-A-T-TCT-A-ATGAA--------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-CTG-TTA--T-T--T-TA--AC-AAC--A-TCCG-A-T----GGA--A--------T-T-C-A-CATCA--C-A-CATTT-C-A-AT--T-TTGACGAAAAAaat
gi|24 : TAT-ACA-CC--A--A-A-A-T-G-------------------AT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TTG-GTAT-T-T--G-TA--AT-AAC--A-TCCG-A-T----TGAT-AT-----T-T-T-C-A-CATCA--A-A-AA--T-A-A-AT--T-TTGACG-AAAACAAa
gi|25 : cgAT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------AAGT-GA--TTTT-A----TCA-GTTA-AGAAAA-AA-AA----CTG-GTAT-C-T--G-TA--AT-AAC--A-TCCG-A-T----TGAT-AT-----T-T-T-C-A-CA--G--C-A-TA--T-CAA-AT--T-TTGAtca
gi|26 : AT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-TGTTT-G-ATG----------TT-T----------A---------A--------A-GT-GA--TTTTAA----TCA-GTTA-AG-AAG-AA-AATAA-CTG-GTAT-C-T--G-T---AT-AAC--A-TCCG-A-T----TGAT-AT-----TCT-T-C-A-CAGCA--T-A-------C-A-AT--T-TTGAatca
gi|27 : --A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TTA-GTTA-AGAAAG-TA-ATT-A-CTG-GTAT-T-T--T-AA--AG-AAT--G-ACCT-A-T----GCAT-AC-----C-T-T-C-A-TATCA--C-A-CA--T-C-A-AT--T-TTGAAGAAGAAatca
gi|28 : AA-AA-G----AT-A-T-TTT-GTATGG---------TT-TT---------A---------A--------A-GC-TA--TTT--A----TCA-GTTATAGAAAG-AA-A-T-A--TG-GTAT-T-T--G-TA--AT-AAC--AATCCG-A-T----TGAT-AT-----T-T-TTC-A-CATCA--A-AACA--T-A-A-AT--T-TTGACG-AAAACAAaa
gi|29 : AT-A-T-TTT-G-ATTA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCC-ATTT-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--G-TG--AC-AAC--A-TCCG-A-T----GAAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAAatcca
gi|3 : TATCACA-CC--A--A-ACACT-GA-T----AAA-AA-G--TCAT-A-T-TTG-A-ATGG---------CT-T----------A---------AG-------A-GC-GA--TTTTTA----TCA-GTTA-AAACAG-AA-AAT-A-CTGTGTAT-T-CTGT-TAATAC-AACCAA-TCCACA-TTTGAAAAT-AT-----T-T-T-C-A--ACTATTC-A-AA--TAC-ACAT--T-GTGACGAAAaatcaata
gi|30 : gg-ATGA---------TT-T----------A---------A--------A-GT-GC--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-GA--AC-AAT--A-TCTG-A-T----GGAT-AC-----C-T-T-C-A-CATCA--C-A-TG--T-A-A-AT--T-TTGAAGAAAGAAAAcatcata
gi|31 : T-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-TT-GA--TTTT-A----TTT-ATTA-AGAAAG-TA-TAT-A-CTG-GTAT-T-T--C-TA--AC-AAT--A-TCCA-A-T----GAAT-AT-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAAAAaaaaatcaatat
gi|32 : -G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCG-A-T----GGAT-AC-----C-A-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGAAGAAGAAAAAagtcaat
gi|33 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------AAACTTTTTAA--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-
gi|34 : TAT--TA-CC--A--A-A-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------A---------ACTTTTTAAA-GTTGA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTA--A-T--T-TA--A--AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-
gi|35 : cgCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-TA--TTTT-A----TTA-GTTA-AGAAAG-TA-TAT-A-CCG-GTGT-C-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----C-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAGAA
gi|36 : AT-ATA-CC--A--A-A-A-TTAA-T----AAA-AA-G--TCAT-AAT-TTT-A-ATGA---------TT-TTAAACTTTTTA---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-agtc
gi|4 : -CC--A--A-A-A-T-TA-T----AAA-AAAG--TCAT-A-T-TTTTA-ATGG---------TT-T----------TTT-------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAT-AA-AAT-A-CTG-GTAT-TAG--T-AA--AT-AAC--A-TCCG-ATT----GAAT-CT-----TCT-T-C-A-CAT-A--A-A-CA--T-A-A-AT--T-TTGAC-AAAAACAA
gi|43 : tagtattacTAT-TTA-CC--A--G-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------N-Gtcaata
gi|5 : gT-ATA-CC--C--A-A-A-T-GA-TTAAAAAA-AA-GGGTCGT-A-T-TTT-C-ATTA---------TT-T----------A---------G--------A-AT-GAA-GTTT-AAAATTCA-GTTA-AGAAAT-AT-A-T-A-CTG-GTAT-T-T--C-TA--AC--AT--G-TCCG-A-T----GGAT-AT-----CAT-G-C-A-TATCA--T-A-CA--T-C-A-AT--T-TTcat
gi|6 : TAT-ATA-CC--A--A-A-A-T-GA-T----CAA-AA-G--TCAT-A-T-TTT-A-ATGAATTAAACTTTT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AA-CAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-AATCA--C-A-CA--T-C-A-TT--T-TTGACGAAAAAtgaaggggaaaagt
gi|7 : gTAA-ATA-CC--ATAA-A-A-T-GT-T----AAA-A--G--CCATTA-T-TTT-G-GTGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAC-A-CTG-GTAT-T-T--T-AA--AC-AAC--A-TCCG-A-T----GGAT-AC-----C-C-T-C-A-CAGCA--C-A-CA--T-C-A-AT--T-------AAAAACAAa
gi|8 : aTAT-ATA-CC--A--A-A-A-T-GA-T----AAA-A--G--TAAT-A-T-TT--G-ATGG---------TT-T----------A---------A--------A-GT-GA--TTT--A----TCA-GTTA-AGAAAG-GA-AAA-A-CTG-GTAT-T-T--G-TA--AT-AAC--A-TCCGTT-T----TGA--AT-----T-T-T-C-A-CATCA--A-A-CA--T-A-A-ATGAT-TGGACGAAAAACAAaaacaaaa
gi|9 : TAT-ATAACC--A--A-A-A-T-GA-T----AAA-AA-G--T--T-A-T-TTT-G-ATGA---------TT-T--------------------A--------A-GT-GA---TTT-A----TCA-GTTT-AGAAAGTAA-AAT-ACCTG-GTAT-TGT--T-TA--AC-AAC--A-TCCG-A------GAAT-AC-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TTGACGGAAAAtcaat
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|37 ): CAATGGCGGCCATCTTTGGAAAATTCCTTGAAATCGGAAGATAATAATACTTAATAGATAAATCTTGCTGAAAACAA
Unaligned ( gi|38 ): AATTTGGCGGCCTCTTGGAAAAATCCTTGAAATCTAAGATAATAATACTCATAGATCTAAAACTTGCTCAACTA
Unaligned ( gi|39 ): TCAATGGCGGCCATCTTGGAAAATCCTTGAAATCTAAGATAATAATACTTAATAGACTAAATCTTG
Unaligned ( gi|40 ): TTCAATGGCGGCCATCTTGGAAAGTCATTGAAATCTAAGATAATGATACT
Unaligned ( gi|41 ): AATGCGGGCCATCTTGGAATAATCTCCGTTGAAAAATATACAGATAA
Unaligned ( gi|42 ): AACTTAATTGCATCATAACATTTAATATCATTTAGGTCATGTTAAAA
Unaligned ( gi|44 ): AAATAAAATCCTTACTGTGTAACGAAAAAGACTAAACTTGCTCAAA
Unaligned ( gi|45 ): ATTCAATATCGGCCATCTTGTAAAATCCTTGAAATCTAAGAAA
Unaligned ( gi|46 ): TCAATGGCGGCCATCTTGGAAAATCCTTGGACTCTAAGATA
Unaligned ( gi|47 ): AATTCAATGGCGCAATCTTGCGAAAGAATCCTTGAAAT
Unaligned ( gi|48 ): ATGGCCGGCCATCTTGGCATAGCCTTGAATCTAAGAT
Alignments
lowQualScore : 1 1 11 11 1 1 5 1 2 4444 1 2 11 1 1 2 2 1 555555555 1 5555555555 666666666 55555555 1 1 33 2 2222 1 1 33 1 1 2 1 1 2 11 1 11 1 11 1 2 1 2222 1 4444444 1 1 1 1 3333 1 11 1 1 1 11 1 0
lowQualScore : . . .. .. . . . . . .... . . .. . . . . . ......... . .......... ......... ........ . . .. . .... . . .. . . . . . . .. . .. . .. . . . .... . ....... . . . . .... . .. . . . .. . .
lowQualScore : 5 4 88 88 3 3 2 3 6 5555 2 4 77 1 1 2 2 1 444444444 1 8888888888 999999999 00000000 1 1 88 2 4444 1 1 99 1 1 2 1 1 2 55 1 55 1 66 1 3 1 4444 1 5555555 1 1 1 2 0000 2 77 2 2 2 77 2 8
consensus : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
Reference ( family-510 ) : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
gi|1 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--A-TCCG-A-T----TGATGAT-----T-TGT-C-A-CATCA--A-A-CA--T-A-A-AT--TATTGACGAA
gi|10 : TAT-ATA-CC--A--A-A-AAT-GA-T----AAA-AAAG--TCAT-A-T-AA--A-ATGA---------TTGT----------A---------A--------A-GT-GA--TTTG-A----TCAAGTTA-AGAAAG-AATAAT-A--TG-GTAT-T-A--C-TA--AC--AC--A-TCCA-A-T----GGAT--T-----T-T-T-CAA-CATCA--CAA-CA--T-C-A-A---T-TTAACGAAAcacaacagcagacaatatctctatggccggcccactcttgaaaaatccttgtgaaaatccaacgactacaatagggtactgttacatcagactaaatcgtcctccaacttattatgtgct
gi|11 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-TGTTT-G-ATTG---------TT-A----------AC--------A--------A-GT-GGATTTTT-G----TCA-GTTA-AGAAAG-AA-AAT-AACTG-GT---T-T--G-TA--AT-AG---A-TTCG-A-T----TCAT-AT-----T-T-T-C-A-CATCA--A-A-CA--T-A-A-AT--T-TTGACGAAAAAtaaatt
gi|12 : T-ATA-CC--A--A-A-A-T-GA-T----AAA-CA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCTG-A-T----GGAT-AC-----C-T-T-T-A-CATCA--C-A-TA--G-C-A-AT--T-TTGAAGAAAAAatca
gi|13 : TAT-TTA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----CCA-GTTT-AGAAAG-AA-ATT-A-CTG-GTAT-T-T--G-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGAAGGGAAATAAaatcaa
gi|14 : AT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-ATT-A-CTC-ATAT-T-T--A-TA--AC-AAC--A-TCCG-G-C----TGAT-AT-----T-T-T-C-A-CACCA--T-A-TA--T-C-A-AT--T-TTGACGAAAAAAAA
gi|15 : AT-ATA-GC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-ATAAAG-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-GT--T-TAGAAGAAAAAa
gi|16 : AT-ATA-CC--A--A-C-A-T-GA-T----AAA-AA-T--TCAT-A-A-TTT-G-GTGA---------TT-T----------A---------A--------A-TT-GAA-TTTT-T----TTA-CTTC-AGAAAA-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----C-T-T-C-G-CATCA--T-G-CA--T-C-A-AT--T-TAGAAGAAAAAagtc
gi|17 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--A-TCCG-A-T----TGAT-AC-----T-T-T-C-A-CATCA--A-A-CA--T---A-AT--T-TTGACG-AAAACAAagt
gi|18 : TA-TC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-A-TTT-G-ATTA---------GT-G----------A---------A--------A-AT-GA--TTTA-A----TCA-GTTA-AGAAAG-TA-TAT-A--TG-GTAT-T-T--T-TA--AC-AAT--A-TCCG-A-T----GGAT-ATCTTAGC-T-T-C-A-CATCA--T-A-CA--T-C-A-AC--T-TT---GAAAAACAAtc
gi|19 : TAT-ATA-GCGGA--ATA-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTTTA-ATTA---------TT-T----------A---------A--------A--T-G---TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-ACCATCA--C-A-CA--T-C-A-AT--T-TTGACGAAtc
gi|2 : TAT-ATA-CC--A--A-A-T-T-GA-T----AAA-AA-A--TCAC-A-T-TTT-A-ATGA---------TT-T----------A---------A--------A-GT-TA--TTTT-A----TCA-G
gi|2 : cgTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-ACTCC--C-A-CA--T-C-A-AT--T-TTGACgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaaagaaaatactggtatttttaacaacatccgatggatattttcaactcccacatcaattttgac
gi|20 : cgtatataccaaattgataaaaaatcacattttaatgatttaaagttattttatcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAT-ATA-CC--A--G-G-A-T-GA-T----GGA-AT-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-CGAAAG-TT-TGT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TTCA-A-T----TGAT-AT-----C-T-T-T-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAA
gi|21 : TAT-ATA-TA--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------G---------A--------A-TT-GA--TTTT-A----TCC-GTTA-AGAAAG-TA-AAT-A-CTG-GTATAT-T--T-TA--AT-AAT--A-TTCG-A-T----GGAT-AC-----T-G-T-T-A-CACCA--C-T-CT--T-C-A-AT--T-TTGAAGAAta
gi|22 : --A--A-A-A-T--A-TCC--AAATAA-A--TAAT-A-T-TT--A-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAG-AA-AAT-A-CTT-GTAT-T-T--TAAA--ACAAAC--A-TCCG-A-T-----GAT-AT-----T-T-T-C-A-CATCA--C-A--A--T-C-A-AT--T-TTGACAAAAAA
gi|23 : gatTAT-ATA-CT--A--A-A-A-T-GA-T----AAA----G--TAAT-A-T-TCT-A-ATGAA--------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-CTG-TTA--T-T--T-TA--AC-AAC--A-TCCG-A-T----GGA--A--------T-T-C-A-CATCA--C-A-CATTT-C-A-AT--T-TTGACGAAAAAaat
gi|24 : TAT-ACA-CC--A--A-A-A-T-G-------------------AT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TTG-GTAT-T-T--G-TA--AT-AAC--A-TCCG-A-T----TGAT-AT-----T-T-T-C-A-CATCA--A-A-AA--T-A-A-AT--T-TTGACG-AAAACAAa
gi|25 : cgAT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------AAGT-GA--TTTT-A----TCA-GTTA-AGAAAA-AA-AA----CTG-GTAT-C-T--G-TA--AT-AAC--A-TCCG-A-T----TGAT-AT-----T-T-T-C-A-CA--G--C-A-TA--T-CAA-AT--T-TTGAtca
gi|26 : AT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-TGTTT-G-ATG----------TT-T----------A---------A--------A-GT-GA--TTTTAA----TCA-GTTA-AG-AAG-AA-AATAA-CTG-GTAT-C-T--G-T---AT-AAC--A-TCCG-A-T----TGAT-AT-----TCT-T-C-A-CAGCA--T-A-------C-A-AT--T-TTGAatca
gi|27 : --A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TTA-GTTA-AGAAAG-TA-ATT-A-CTG-GTAT-T-T--T-AA--AG-AAT--G-ACCT-A-T----GCAT-AC-----C-T-T-C-A-TATCA--C-A-CA--T-C-A-AT--T-TTGAAGAAGAAatca
gi|28 : AA-AA-G----AT-A-T-TTT-GTATGG---------TT-TT---------A---------A--------A-GC-TA--TTT--A----TCA-GTTATAGAAAG-AA-A-T-A--TG-GTAT-T-T--G-TA--AT-AAC--AATCCG-A-T----TGAT-AT-----T-T-TTC-A-CATCA--A-AACA--T-A-A-AT--T-TTGACG-AAAACAAaa
gi|29 : AT-A-T-TTT-G-ATTA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCC-ATTT-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--G-TG--AC-AAC--A-TCCG-A-T----GAAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAAatcca
gi|3 : TATCACA-CC--A--A-ACACT-GA-T----AAA-AA-G--TCAT-A-T-TTG-A-ATGG---------CT-T----------A---------AG-------A-GC-GA--TTTTTA----TCA-GTTA-AAACAG-AA-AAT-A-CTGTGTAT-T-CTGT-TAATAC-AACCAA-TCCACA-TTTGAAAAT-AT-----T-T-T-C-A--ACTATTC-A-AA--TAC-ACAT--T-GTGACGAAAaatcaata
gi|30 : gg-ATGA---------TT-T----------A---------A--------A-GT-GC--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-GA--AC-AAT--A-TCTG-A-T----GGAT-AC-----C-T-T-C-A-CATCA--C-A-TG--T-A-A-AT--T-TTGAAGAAAGAAAAcatcata
gi|31 : T-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-TT-GA--TTTT-A----TTT-ATTA-AGAAAG-TA-TAT-A-CTG-GTAT-T-T--C-TA--AC-AAT--A-TCCA-A-T----GAAT-AT-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAAAAaaaaatcaatat
gi|32 : -G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCG-A-T----GGAT-AC-----C-A-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGAAGAAGAAAAAagtcaat
gi|33 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------AAACTTTTTAA--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-
gi|34 : TAT--TA-CC--A--A-A-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------A---------ACTTTTTAAA-GTTGA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTA--A-T--T-TA--A--AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-
gi|35 : cgCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-TA--TTTT-A----TTA-GTTA-AGAAAG-TA-TAT-A-CCG-GTGT-C-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----C-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAGAA
gi|36 : AT-ATA-CC--A--A-A-A-TTAA-T----AAA-AA-G--TCAT-AAT-TTT-A-ATGA---------TT-TTAAACTTTTTA---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-agtc
gi|4 : -CC--A--A-A-A-T-TA-T----AAA-AAAG--TCAT-A-T-TTTTA-ATGG---------TT-T----------TTT-------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAT-AA-AAT-A-CTG-GTAT-TAG--T-AA--AT-AAC--A-TCCG-ATT----GAAT-CT-----TCT-T-C-A-CAT-A--A-A-CA--T-A-A-AT--T-TTGAC-AAAAACAA
gi|43 : tagtattacTAT-TTA-CC--A--G-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------N-Gtcaata
gi|5 : gT-ATA-CC--C--A-A-A-T-GA-TTAAAAAA-AA-GGGTCGT-A-T-TTT-C-ATTA---------TT-T----------A---------G--------A-AT-GAA-GTTT-AAAATTCA-GTTA-AGAAAT-AT-A-T-A-CTG-GTAT-T-T--C-TA--AC--AT--G-TCCG-A-T----GGAT-AT-----CAT-G-C-A-TATCA--T-A-CA--T-C-A-AT--T-TTcat
gi|6 : TAT-ATA-CC--A--A-A-A-T-GA-T----CAA-AA-G--TCAT-A-T-TTT-A-ATGAATTAAACTTTT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AA-CAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-AATCA--C-A-CA--T-C-A-TT--T-TTGACGAAAAAtgaaggggaaaagt
gi|7 : gTAA-ATA-CC--ATAA-A-A-T-GT-T----AAA-A--G--CCATTA-T-TTT-G-GTGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAC-A-CTG-GTAT-T-T--T-AA--AC-AAC--A-TCCG-A-T----GGAT-AC-----C-C-T-C-A-CAGCA--C-A-CA--T-C-A-AT--T-------AAAAACAAa
gi|8 : aTAT-ATA-CC--A--A-A-A-T-GA-T----AAA-A--G--TAAT-A-T-TT--G-ATGG---------TT-T----------A---------A--------A-GT-GA--TTT--A----TCA-GTTA-AGAAAG-GA-AAA-A-CTG-GTAT-T-T--G-TA--AT-AAC--A-TCCGTT-T----TGA--AT-----T-T-T-C-A-CATCA--A-A-CA--T-A-A-ATGAT-TGGACGAAAAACAAaaacaaaa
gi|9 : TAT-ATAACC--A--A-A-A-T-GA-T----AAA-AA-G--T--T-A-T-TTT-G-ATGA---------TT-T--------------------A--------A-GT-GA---TTT-A----TCA-GTTT-AGAAAGTAA-AAT-ACCTG-GTAT-TGT--T-TA--AC-AAC--A-TCCG-A------GAAT-AC-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TTGACGGAAAAtcaat
blockSeqs : C A GG TA T C A T A TAAA T A GG T A G T T ATTAAACTT G TAAACTTTTT AACTTTTTA CTTTTTAA A T AT A AAAT A T TA T A A T A A TG A AT A CA A C T TTGA . CTTAGC . T A C TTC A TT A A C GA .
blockSeqs : . . . . . . A . A CC . A . . . G T . A . T TT G . . A T . . . A . . C . . G . . . . . . T . . . TC . . . . CA . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . C . . . A . . . . A . . . . . . . . . . . . . . . . TC . . . . A . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . CA . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . C . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . A . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . C . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . C . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . C . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . C . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . A . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . C . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . C . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . T . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . C . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
finalCons : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|37 ): CAATGGCGGCCATCTTTGGAAAATTCCTTGAAATCGGAAGATAATAATACTTAATAGATAAATCTTGCTGAAAACAA
Unaligned ( gi|38 ): AATTTGGCGGCCTCTTGGAAAAATCCTTGAAATCTAAGATAATAATACTCATAGATCTAAAACTTGCTCAACTA
Unaligned ( gi|39 ): TCAATGGCGGCCATCTTGGAAAATCCTTGAAATCTAAGATAATAATACTTAATAGACTAAATCTTG
Unaligned ( gi|40 ): TTCAATGGCGGCCATCTTGGAAAGTCATTGAAATCTAAGATAATGATACT
Unaligned ( gi|41 ): AATGCGGGCCATCTTGGAATAATCTCCGTTGAAAAATATACAGATAA
Unaligned ( gi|42 ): AACTTAATTGCATCATAACATTTAATATCATTTAGGTCATGTTAAAA
Unaligned ( gi|44 ): AAATAAAATCCTTACTGTGTAACGAAAAAGACTAAACTTGCTCAAA
Unaligned ( gi|45 ): ATTCAATATCGGCCATCTTGTAAAATCCTTGAAATCTAAGAAA
Unaligned ( gi|46 ): TCAATGGCGGCCATCTTGGAAAATCCTTGGACTCTAAGATA
Unaligned ( gi|47 ): AATTCAATGGCGCAATCTTGCGAAAGAATCCTTGAAAT
Unaligned ( gi|48 ): ATGGCCGGCCATCTTGGCATAGCCTTGAATCTAAGAT
Alignments
lowQualScore : 1 1 11 11 1 1 5 1 2 4444 1 2 11 1 1 2 2 1 555555555 1 5555555555 666666666 55555555 1 1 33 2 2222 1 1 33 1 1 2 1 1 2 11 1 11 1 11 1 2 1 2222 1 4444444 1 1 1 1 3333 1 11 1 1 1 11 1 0
lowQualScore : . . .. .. . . . . . .... . . .. . . . . . ......... . .......... ......... ........ . . .. . .... . . .. . . . . . . .. . .. . .. . . . .... . ....... . . . . .... . .. . . . .. . .
lowQualScore : 5 4 88 88 3 3 2 3 6 5555 2 4 77 1 1 2 2 1 444444444 1 8888888888 999999999 00000000 1 1 88 2 4444 1 1 99 1 1 2 1 1 2 55 1 55 1 66 1 3 1 4444 1 5555555 1 1 1 2 0000 2 77 2 2 2 77 2 8
consensus : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
Reference ( family-510 ) : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAACAA
gi|1 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--A-TCCG-A-T----TGATGAT-----T-TGT-C-A-CATCA--A-A-CA--T-A-A-AT--TATTGACGAA
gi|10 : TAT-ATA-CC--A--A-A-AAT-GA-T----AAA-AAAG--TCAT-A-T-AA--A-ATGA---------TTGT----------A---------A--------A-GT-GA--TTTG-A----TCAAGTTA-AGAAAG-AATAAT-A--TG-GTAT-T-A--C-TA--AC--AC--A-TCCA-A-T----GGAT--T-----T-T-T-CAA-CATCA--CAA-CA--T-C-A-A---T-TTAACGAAAcacaacagcagacaatatctctatggccggcccactcttgaaaaatccttgtgaaaatccaacgactacaatagggtactgttacatcagactaaatcgtcctccaacttattatgtgct
gi|11 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-TGTTT-G-ATTG---------TT-A----------AC--------A--------A-GT-GGATTTTT-G----TCA-GTTA-AGAAAG-AA-AAT-AACTG-GT---T-T--G-TA--AT-AG---A-TTCG-A-T----TCAT-AT-----T-T-T-C-A-CATCA--A-A-CA--T-A-A-AT--T-TTGACGAAAAAtaaatt
gi|12 : T-ATA-CC--A--A-A-A-T-GA-T----AAA-CA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCTG-A-T----GGAT-AC-----C-T-T-T-A-CATCA--C-A-TA--G-C-A-AT--T-TTGAAGAAAAAatca
gi|13 : TAT-TTA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----CCA-GTTT-AGAAAG-AA-ATT-A-CTG-GTAT-T-T--G-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGAAGGGAAATAAaatcaa
gi|14 : AT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-ATT-A-CTC-ATAT-T-T--A-TA--AC-AAC--A-TCCG-G-C----TGAT-AT-----T-T-T-C-A-CACCA--T-A-TA--T-C-A-AT--T-TTGACGAAAAAAAA
gi|15 : AT-ATA-GC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-ATAAAG-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-GT--T-TAGAAGAAAAAa
gi|16 : AT-ATA-CC--A--A-C-A-T-GA-T----AAA-AA-T--TCAT-A-A-TTT-G-GTGA---------TT-T----------A---------A--------A-TT-GAA-TTTT-T----TTA-CTTC-AGAAAA-TA-TAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----C-T-T-C-G-CATCA--T-G-CA--T-C-A-AT--T-TAGAAGAAAAAagtc
gi|17 : TGT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-C-TTT-G-ATAG---------TT-T----------A---------A--------A-TT-TA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-TCG-GTAT-T-T--T-TA--AT-AGC--A-TCCG-A-T----TGAT-AC-----T-T-T-C-A-CATCA--A-A-CA--T---A-AT--T-TTGACG-AAAACAAagt
gi|18 : TA-TC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-A-TTT-G-ATTA---------GT-G----------A---------A--------A-AT-GA--TTTA-A----TCA-GTTA-AGAAAG-TA-TAT-A--TG-GTAT-T-T--T-TA--AC-AAT--A-TCCG-A-T----GGAT-ATCTTAGC-T-T-C-A-CATCA--T-A-CA--T-C-A-AC--T-TT---GAAAAACAAtc
gi|19 : TAT-ATA-GCGGA--ATA-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTTTA-ATTA---------TT-T----------A---------A--------A--T-G---TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-ACCATCA--C-A-CA--T-C-A-AT--T-TTGACGAAtc
gi|2 : TAT-ATA-CC--A--A-A-T-T-GA-T----AAA-AA-A--TCAC-A-T-TTT-A-ATGA---------TT-T----------A---------A--------A-GT-TA--TTTT-A----TCA-G
gi|2 : cgTA-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-ACTCC--C-A-CA--T-C-A-AT--T-TTGACgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaaagaaaatactggtatttttaacaacatccgatggatattttcaactcccacatcaattttgac
gi|20 : cgtatataccaaattgataaaaaatcacattttaatgatttaaagttattttatcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAT-ATA-CC--A--G-G-A-T-GA-T----GGA-AT-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-GA--TTTT-A----TTA-GTTA-CGAAAG-TT-TGT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TTCA-A-T----TGAT-AT-----C-T-T-T-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAA
gi|21 : TAT-ATA-TA--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------G---------A--------A-TT-GA--TTTT-A----TCC-GTTA-AGAAAG-TA-AAT-A-CTG-GTATAT-T--T-TA--AT-AAT--A-TTCG-A-T----GGAT-AC-----T-G-T-T-A-CACCA--C-T-CT--T-C-A-AT--T-TTGAAGAAta
gi|22 : --A--A-A-A-T--A-TCC--AAATAA-A--TAAT-A-T-TT--A-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAG-AA-AAT-A-CTT-GTAT-T-T--TAAA--ACAAAC--A-TCCG-A-T-----GAT-AT-----T-T-T-C-A-CATCA--C-A--A--T-C-A-AT--T-TTGACAAAAAA
gi|23 : gatTAT-ATA-CT--A--A-A-A-T-GA-T----AAA----G--TAAT-A-T-TCT-A-ATGAA--------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG--A-AAT-A-CTG-TTA--T-T--T-TA--AC-AAC--A-TCCG-A-T----GGA--A--------T-T-C-A-CATCA--C-A-CATTT-C-A-AT--T-TTGACGAAAAAaat
gi|24 : TAT-ACA-CC--A--A-A-A-T-G-------------------AT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-GC-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-TTG-GTAT-T-T--G-TA--AT-AAC--A-TCCG-A-T----TGAT-AT-----T-T-T-C-A-CATCA--A-A-AA--T-A-A-AT--T-TTGACG-AAAACAAa
gi|25 : cgAT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-T-TTT-G-ATGG---------TT-T----------A---------A--------AAGT-GA--TTTT-A----TCA-GTTA-AGAAAA-AA-AA----CTG-GTAT-C-T--G-TA--AT-AAC--A-TCCG-A-T----TGAT-AT-----T-T-T-C-A-CA--G--C-A-TA--T-CAA-AT--T-TTGAtca
gi|26 : AT-ATA-CC--A--A-A-AAT-GA-------AA-AA-G--TCAT-A-TGTTT-G-ATG----------TT-T----------A---------A--------A-GT-GA--TTTTAA----TCA-GTTA-AG-AAG-AA-AATAA-CTG-GTAT-C-T--G-T---AT-AAC--A-TCCG-A-T----TGAT-AT-----TCT-T-C-A-CAGCA--T-A-------C-A-AT--T-TTGAatca
gi|27 : --A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TTA-GTTA-AGAAAG-TA-ATT-A-CTG-GTAT-T-T--T-AA--AG-AAT--G-ACCT-A-T----GCAT-AC-----C-T-T-C-A-TATCA--C-A-CA--T-C-A-AT--T-TTGAAGAAGAAatca
gi|28 : AA-AA-G----AT-A-T-TTT-GTATGG---------TT-TT---------A---------A--------A-GC-TA--TTT--A----TCA-GTTATAGAAAG-AA-A-T-A--TG-GTAT-T-T--G-TA--AT-AAC--AATCCG-A-T----TGAT-AT-----T-T-TTC-A-CATCA--A-AACA--T-A-A-AT--T-TTGACG-AAAACAAaa
gi|29 : AT-A-T-TTT-G-ATTA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCC-ATTT-AGAAAG-AA-AAT-A-CTG-GTAT-T-T--G-TG--AC-AAC--A-TCCG-A-T----GAAT-AT-----T-T-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGACGAAAAAatcca
gi|3 : TATCACA-CC--A--A-ACACT-GA-T----AAA-AA-G--TCAT-A-T-TTG-A-ATGG---------CT-T----------A---------AG-------A-GC-GA--TTTTTA----TCA-GTTA-AAACAG-AA-AAT-A-CTGTGTAT-T-CTGT-TAATAC-AACCAA-TCCACA-TTTGAAAAT-AT-----T-T-T-C-A--ACTATTC-A-AA--TAC-ACAT--T-GTGACGAAAaatcaata
gi|30 : gg-ATGA---------TT-T----------A---------A--------A-GT-GC--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-GA--AC-AAT--A-TCTG-A-T----GGAT-AC-----C-T-T-C-A-CATCA--C-A-TG--T-A-A-AT--T-TTGAAGAAAGAAAAcatcata
gi|31 : T-A-T-TTT-G-ATGG---------TT-T----------A---------A--------A-TT-GA--TTTT-A----TTT-ATTA-AGAAAG-TA-TAT-A-CTG-GTAT-T-T--C-TA--AC-AAT--A-TCCA-A-T----GAAT-AT-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAAAAaaaaatcaatat
gi|32 : -G--TAAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAT-A-CTG-GTAT-T-T--T-TA--AC-AAT--A-TCCG-A-T----GGAT-AC-----C-A-T-C-A-CATCA--C-A-CA--T-C-A-AT--T-TTGAAGAAGAAAAAagtcaat
gi|33 : TAT-ATA-CC--A--A-A-A-T-GA-T----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------AAACTTTTTAA--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-
gi|34 : TAT--TA-CC--A--A-A-A-T-GAAT----AAA-AA-G--TCAT-A-T-TTT-A-ATGA---------TT-T----------A---------ACTTTTTAAA-GTTGA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTA--A-T--T-TA--A--AAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-
gi|35 : cgCAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------A-AT-TA--TTTT-A----TTA-GTTA-AGAAAG-TA-TAT-A-CCG-GTGT-C-T--T-TA--AC-AAT--A-TCCA-A-T----GGAT-AT-----C-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TAGAAGAAGAA
gi|36 : AT-ATA-CC--A--A-A-A-TTAA-T----AAA-AA-G--TCAT-AAT-TTT-A-ATGA---------TT-TTAAACTTTTTA---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AC-agtc
gi|4 : -CC--A--A-A-A-T-TA-T----AAA-AAAG--TCAT-A-T-TTTTA-ATGG---------TT-T----------TTT-------A--------A-GT-GA--TTTT-A----TCA-GTTA-AG-AAT-AA-AAT-A-CTG-GTAT-TAG--T-AA--AT-AAC--A-TCCG-ATT----GAAT-CT-----TCT-T-C-A-CAT-A--A-A-CA--T-A-A-AT--T-TTGAC-AAAAACAA
gi|43 : tagtattacTAT-TTA-CC--A--G-A-A-T-GA-T----AAA-AA-G--TTAT-A-T-TTT-G-ATGA---------TT-T----------A---------A--------N-Gtcaata
gi|5 : gT-ATA-CC--C--A-A-A-T-GA-TTAAAAAA-AA-GGGTCGT-A-T-TTT-C-ATTA---------TT-T----------A---------G--------A-AT-GAA-GTTT-AAAATTCA-GTTA-AGAAAT-AT-A-T-A-CTG-GTAT-T-T--C-TA--AC--AT--G-TCCG-A-T----GGAT-AT-----CAT-G-C-A-TATCA--T-A-CA--T-C-A-AT--T-TTcat
gi|6 : TAT-ATA-CC--A--A-A-A-T-GA-T----CAA-AA-G--TCAT-A-T-TTT-A-ATGAATTAAACTTTT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-AA-AAT-A-CTG-GTAA-T-T--T-TA--AA-CAC--A-TCCG-A-T----GGAT-AT-----T-T-T-C-A-AATCA--C-A-CA--T-C-A-TT--T-TTGACGAAAAAtgaaggggaaaagt
gi|7 : gTAA-ATA-CC--ATAA-A-A-T-GT-T----AAA-A--G--CCATTA-T-TTT-G-GTGA---------TT-T----------A---------A--------A-GT-GA--TTTT-A----TCA-GTTA-AGAAAG-TA-AAC-A-CTG-GTAT-T-T--T-AA--AC-AAC--A-TCCG-A-T----GGAT-AC-----C-C-T-C-A-CAGCA--C-A-CA--T-C-A-AT--T-------AAAAACAAa
gi|8 : aTAT-ATA-CC--A--A-A-A-T-GA-T----AAA-A--G--TAAT-A-T-TT--G-ATGG---------TT-T----------A---------A--------A-GT-GA--TTT--A----TCA-GTTA-AGAAAG-GA-AAA-A-CTG-GTAT-T-T--G-TA--AT-AAC--A-TCCGTT-T----TGA--AT-----T-T-T-C-A-CATCA--A-A-CA--T-A-A-ATGAT-TGGACGAAAAACAAaaacaaaa
gi|9 : TAT-ATAACC--A--A-A-A-T-GA-T----AAA-AA-G--T--T-A-T-TTT-G-ATGA---------TT-T--------------------A--------A-GT-GA---TTT-A----TCA-GTTT-AGAAAGTAA-AAT-ACCTG-GTAT-TGT--T-TA--AC-AAC--A-TCCG-A------GAAT-AC-----A-T-T-C-A-CATCA--T-A-CA--T-C-A-AT--T-TTGACGGAAAAtcaat
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|37 ): CAATGGCGGCCATCTTTGGAAAATTCCTTGAAATCGGAAGATAATAATACTTAATAGATAAATCTTGCTGAAAACAA
Unaligned ( gi|38 ): AATTTGGCGGCCTCTTGGAAAAATCCTTGAAATCTAAGATAATAATACTCATAGATCTAAAACTTGCTCAACTA
Unaligned ( gi|39 ): TCAATGGCGGCCATCTTGGAAAATCCTTGAAATCTAAGATAATAATACTTAATAGACTAAATCTTG
Unaligned ( gi|40 ): TTCAATGGCGGCCATCTTGGAAAGTCATTGAAATCTAAGATAATGATACT
Unaligned ( gi|41 ): AATGCGGGCCATCTTGGAATAATCTCCGTTGAAAAATATACAGATAA
Unaligned ( gi|42 ): AACTTAATTGCATCATAACATTTAATATCATTTAGGTCATGTTAAAA
Unaligned ( gi|44 ): AAATAAAATCCTTACTGTGTAACGAAAAAGACTAAACTTGCTCAAA
Unaligned ( gi|45 ): ATTCAATATCGGCCATCTTGTAAAATCCTTGAAATCTAAGAAA
Unaligned ( gi|46 ): TCAATGGCGGCCATCTTGGAAAATCCTTGGACTCTAAGATA
Unaligned ( gi|47 ): AATTCAATGGCGCAATCTTGCGAAAGAATCCTTGAAAT
Unaligned ( gi|48 ): ATGGCCGGCCATCTTGGCATAGCCTTGAATCTAAGAT