lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 88888888888888888 1 22 1 7777777777777777777777777 1111 1 1 11 1 1 1 44444444 1 2 22222222222 6666666 333333 1111 333333333333 111 222 3333333333333333333333333333 111 111 6666666666666 333333333333 11 1 2 444 7777777777777777 11111 2222 33333333333333333 22222222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 1 1 666666666666666 1111 11 222222222 33
lowQualScore : 5 66666666666666666 0 99 0 9999999999999999999999999 55 2 8888 0 0 5 0 44 4 3 5 0 0 22222222 0 0 8 3 33333333333 3 0 5555555 4 0 444444 444 6666 2 9 444444444444 000 8 111 77 5 3 3333333333333333333333333333 444 8 1 999 1111111111111 999999999999 6 44 6 6 3 6 6 99 111 1 4444444444444444 6 66666 6 3 2 5555 8 1 8 6 2 99 88888888888888888 8 8 22222222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 0 66 5 8 0 5 888888888888888 4444 00 444 2 3 3 000000000 11
lowQualScore : . ................. . .. . ......................... .. . .... . . . . .. . . . . . ........ . . . . ........... . . ....... . . ...... ... .... . . ............ ... . ... .. . . ............................ ... . . ... ............. ............ . .. . . . . . .. ... . ................ . ..... . . . .... . . . . . .. ................. . . ........ ........................................................................................................................................................................................................ . . .. . . . . ............... .... .. ... . . . ......... ..
lowQualScore : 5 22222222222222222 0 00 0 2222222222222222222222222 88 2 6666 4 8 8 8 44 0 2 5 0 5 55555555 0 0 8 0 22222222222 8 8 4444444 8 8 888888 000 5555 5 8 111111111111 000 4 111 99 7 5 1111111111111111111111111111 000 0 7 555 3333333333333 333333333333 7 33 7 7 3 7 7 22 000 0 0000000000000000 7 77777 7 2 5 8888 0 0 0 0 8 22 22222222222222222 0 0 00000000 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 00 6 0 6 5 000000000000000 8888 22 555 5 2 2 888888888 00
consensus : CACTTTCGTGTCA--------CTTGAAGTTAAAGG-GTAATTGC-TTGAA-CGTTG---A-----------CA--------CAGTGAAGAGAACAGATGATGGATT---AATTNTTTGAAAAATAGAAGAACACTNTTTGTTTGA-CGAGGTTT-TCAA--GGCTAAGTGAGCG-CCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATCCG-GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGG--GTTGNTAGGGTAAGTTTTAAAGAAT-TTG---AGAAGA-NTATTTGCT--TTTAG-ATCTGT-------A--TTGTTGTCATATT-----TACT---T-AGGTTATT-ATGTGATTTT-G--NG---TT-TTTTTC---TTC--CA--AGAATT-TA-GAA-AG-GG-CATT-GTGTAACG--TG---AAGGGTCATTAGT-TT--TGC---T-ATG-TT-----T-GTAAAATGCAGCAAACATT-G--CTC-TTTATGCTTTTT-ACACATATGTCACTATTC----AGC--AT---CTC-AA-T--TT--ATGTTTTTA--AATTATATATGTAT-----G-TATATCTACCCTG-A-ATATATATNCT-TAA------TCCCCACATTATT-AT---TGATTTCCTT--CT-AA--TTC-TTGTTA--AAAA--AN-T-----------A----------TTCTT--GG----CGCCATTTG-AATCT--GGTGAT--GC-G-GT----TCTCGT---CTGTGTTATTGGATATTTAATA-CAAAAAAGCTTTT-CTAT-AT------ATTCATT--A-CATNNTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( gi|3 ) : CACTTTCGTGTCA--------CT-------AAAGG-GTAATTGC-TTGAA-CGTTG---A-----------CA--------CAGTAAAGAGAACAGATGATGGATT---GATTATTTGAAAAATAGAAGAACACTATTTGTTTGA-CGTGGTTTATCAAAAGGCTAAGTGAGTG-C-AGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGG--GCTGGTAGGGTAAGTTTTCAGGAATCTTG---AGAATA-TAATTTGCT--TTTAG-ATCTAT-------A--TT-TTGTCATATT-----TACT---T-AGGTTATT-ATGTGATTT-----AG---TT-TTTTTC---TTC--CA--AGAATT-TA-AAA-AG-GG-CATT-GTG-AACG--TGT--AAGGGTCATT-GTCTT--TGC---T-ATG-TT-----T-GTAAAATGCAGCAAACATT-G--CTT-TTTATGCTTTTT-ACACATATGCCGCTATTC----AGC--AA---CTC-AA-T--TT--A-GTTTTTA--AATTAAATATATA------G-TATATCCACCCTG-A-ATGT-TATCCT-TAA------TCCCCACATTATT-AT---TGATTTCCTT--CT-AA--TTC-CTGTTG--AAAA--AT-T-----------A----------TTCTTATG-----CGCCATTTCCAATCTTTGGTGAT--GCAG-GT----TCTCATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTTC-TTATAAT------ATTCATT--A-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATA
gi|4 : CACTTTCGTGTCA--------CT-------AAAGG-GTAATTGC-TTGAA-CGTTG---A-----------CA--------CAGTAAAGAGAACAGATGATGGATT---GATTATTTGAAAAATAGAAGAACACTATTTGTTTGA-CGTGGTTTATCAAAAGGCTAAGTGAGTG-C-AGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGG--GCTGGTAGGGTAAGTTTTCAGGAATCTTG---AGAATA-TAATTTGCT--TTTAG-ATCTAT-------A--T
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA--------CTTGAAGTTAAAGGTGTAATTA--TTGAA-CGCTG---A-----------CC--------CAGTGAAGAGAACAGATGATGGATT---AATTCTTTGAGAA-TAGAAGA-CACTTGTTGTT-GA-CGAGGGTTTT------------TGACTG-CCAGGAACAGGTGACGTGC-AAGGT------AGGG---CG--------GCAAGTAATGACGAGCG---GCATGGACGG---TTGTTGGGACAAGTT--AAAGAAT-TTG---AGAAGA-ATATTTGCT--TTTAG-ATCTGT-------A--TTGTTGTCATATT-----TACT---T-ACGTTAT----GTGATTTTAGGGGG---TT-TGTTTT--------CA--AGAATT-TA-GAA-AG-GGACATT-GTGTAACG--TG---AAGGGTTATTAGT--T--TG----T-ATG-TT-----T-GTAAAATGCAGCAAACATTGG--CTC-TTTATGCTTTAT-ACACATATATCACTA-TC----AGC--AT---CTC-AA-TTATC--A-GTTTTTA-----------------------TATGTCTACCCTG-ATATA--CATACT-TAA------TAAACAAATTAT
gi|2 : tattgaattatatgcagctatgtcgaaaaggcgaCACTT-CGTGTCA--------CTTGAAGTTAAACG-GTAATTG--TTGAA-CGTTGGTAA-----------CA--------C-GTGAAGAGAACAGATGATGGATT---AATT-CTTGAGAATAAGAAG-ACACTTTTTG-TTGACCGAGGTTT-TCAA---GCTAAGTGAGCGCC-AGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-TAGGGCAAGGAATG-----CGAAC----GGAATG--GTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATA-TTATC--CT--TTTAG-ATATGT-------A--gcacaaaagtatccttgcgccatttgaatctggcgatgcggttctcgtctgtgttattaatacaaaaagctttttcattacatcttattaaggaaaatacatagcatatgtaaatata
gi|1 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaACTTTCGTGTCAATTTGAAGTT-------AAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGCCCAAAAGGAGACA-TGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAAT-GAAGGACACc
gi|6 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaTGATGGATT---AATTCTTTGAAAA-TAGACGA-CATTATGTGTT-GA-CGAGGTTT-TCAA--GGCTAAGTGAGCG-CCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------TAGGGCAAGGAATGACGAGCG---GCATGGACAGTTGTTGGT---GTAAGTT--AAAGGAT-TTG---AGAAGA-ATACTTGCT--TTTAG-ATATGT-------AGGTT-TT----------------T---T-GGG----------GATTT-----TA---TT-TTTTTC---TGC---A--AGAATT-TA-GAACGG-GG-CATT-GTGTAACG--TG---AAGGGTCATTAGT--T--TG----T-ATG-TTCAGTTT-GTAAAATGCAGCAAACATT-GG-CTC-TATATGCTTTTT-ACACTTATGCCACTA-TC----AGC--AT---CTC-AATT--TT--A-GCTTTTA--AATTATATATGTATT----G-TATATCTACCCTGAA-ATA--TATCCT-TAA------TCCCCAAATGA--------TGA------------AA-----------A--AAAA--AT-TAGCACAAAAGTA----------TTCTTG-G-----C-CCATTT--GATC--TGGTGATTCGC-G-GT----TCTC-TGT--TGT-TTA-TGG--ATTTAATA-C----AAGCTTTTGCTAT-AT------ATTCATT--AGCATGATATTAA-GAAAATACAGA-TAGGGGCATAT--TAAATgtcgtggaattttgaagcgctaagggaaca
gi|10 : AACGGGTGACGAGC-AAGGT--AATAGGGGATC------TAGGGCAATGAATGACGAGCG---GCATGG----------GT----TAAGTT--AAAGAAT-TTG---AGAAGA-ATATTTGCT--TTTAG-ATCTGT-------A--CTGTTGTCATATT-----TACT---T-AGGTTATT-ATGTGATTTTTA--AGGGATTGTTTTTC---TT---CA--AGAATT-TAGAAA-GG-GG-CATT-GTG-TAAG--TG---AAGGGTCATTAG---T--TG----T-ATG-TT-----T-GTA---------AAACATTGG--CTC-TTTATGCTTTTT-ACACATATATCACTA-TC----ACC--AT---CTC-AA-T--TT--ATGTTTTttt
gi|18 : gG--GTTGTTAGGGTAAG--TTAAAGAAT-TTG---AGAAGA-ATATTTCCT--TTTAG-Aa
gi|8 : cggcatGGCTAAGTCGTAAG--AT-TTG---AGAAAAATATTTTGCTATTTTAGCATCTGTGGTGGCGA--TT-TTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTC-----TG---TG-TTCTTCGAACTC--GACTAGAATT-TAGAAA-AGAGG-CATTTGCG-AACACCTGTTAAAGGG-CATTCGT-TG--TAC---C-GTGGTT-----T-GTAAAATGCAGCACACATT-GTGCTT-TTTATGCTTTGA-ACACATAGGTCATTATCCTGATAGTCTAATATCTT-AA-T--TTTTA-GTTTTTATAAATCATATATGTATCGCTTGCTATA-CCGCTATG-A-A-GTATAGCTTGTAAATTCTTTCTCCAC--TATTTATGCCTGATTT--TT--CT-TA--ACC-TTGTTG----AA--TT-T-----------A----------TTTTT
gi|12 : CT---T-AGGTTATT-ATGTGATTTTAG--GG---TT-TTTTTC---ATC---A--AGAATT-TA-GAA-AG-GGGCATT-GTGTAACG--TG---AAGGGTGATTAGTTTG--TACATGT-ATG-TT-----T-GTAAAATGCAGCAAACATT-G--tgatacctcgaccagcaaacgtatcatgtgggtgccttggagaatctggtgatggcgtaatatctcttctctgtgttattgaaatttaatagcaaa
gi|9 : GTTATTGATGGTATTTTTA--AG---GG-TTTTTT---TTCATCA--AGAATTATA-GAA-AG-GG-CATT-GTGTAACG--TG----AAGGTGATT-ATCTTGCTAC---TTATG-TT-----TTGTAA--T-CAGCAA-CATT-GG-CTTCTTTGTGCTTTTTTACAC-TATGTCA-TAT-C----AGC--AT---CTCCAA-TA-TT--ATGTTTTCA--AATTA------------------TATC----------ATGT-TATGTA-TAG------TTTCTAC-TAATT-AT-----ATTTCCTTATCT-CC--TTCTCTGTCA--AAAACAAT-T-----------ACCACAGTAAATTCTTCGGGT---TGCAATTTGGAATCT--GGTGAT--GC-G-GT----TCTCGT----TGTG--ATTGGATATT-AATA-C-AAAAAGCTTTT-CTAT-AT------ATTCATTCAA-CATTGT----AGG--AAT-C--ATTT---GCATA-TGTAAg
gi|11 : aggctATAT-------G-TATATCTACCCTG-A-A-ATATATGCT-TAA------TCCCCACATTATG-AT---TTTCTTCCTT--GT-AAAATTT-TTTTTACCACAA--ACGT-----------A----------TTCTT--G-----CGCCATTTG-AATCT--GGTGAG--GC-G-GT----TCTCAT---CTGTGCTATTGGATATTTAATA-CAAAAA-GCTTTT-CTATAATCTATATATTCATT--A-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATtaattgatgttagatttacaacgttattgtgagttgaggtcgctaaatcagatgtac
gi|7 : ATTTC--T--CTGAA--TTC---GTTG--AAAA--AA-T-----------A----------TAATTATGGGCTTTGCCTTTTCCAA-CTTTAAAGAT--G
gi|5 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaaAAA--AG-T-----------A----------TCCTT--G-----CGCCATTTG-AATCT--GGCGAT--GC-G-GT----TCTCGT---CTGTGTTATT--------AATA-CAAAAA-GCTTT----------------TTCATT--A-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATAgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggcttgaagtttaaaggtgttgaaacgttgactccagtaaagagagaatgtaatgaa
gi|8 : tattgaattatatgcagctatgtcgaaaaggcgacacttcttgtcacttgaagttaaaggtgtaattattgaacgctgacccagtgaagagaacagatgatggattaattctttgagaatagaagacacttgttgttgacgagggtttttgactgccaggaacaggtgacgtgcaaggtagggcggcaagtaatgacgagcggcatggacggttgttgggacaagttaaagaatttgagaagaatatttgcttttagatctgtattgttgtcatatttacttacgttatgtgattttagggggtttgttttcaagaatttagaaagggacattgtgtaacgtgaagggttattagtttgtatgtttgtaaaatgcagcaaacattggctctttatgctttatacacatatatcactatcagcatctcaattatcagtttttatatgtctaccctgatatacatacttaataaacaaattatgcacAATCT--GGTGAT--G--GCGTAATATCTCTT-CTCTGTGTTATTGAA-ATTTAATAGCAAAta
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 444444444444444444444444444 1 1 1 111111111111 1 555555555 222 111 1 222222222 22222 111 111 444444 2222222 1 1111 3333333333 1 2222 333333333333 111 111 222222222 111 2222222222 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 11111 111111 11111 11 2 333333333 11 11 111
lowQualScore : 0 6 7 6 44 6 444444444444444444444444444 5 99 1 1 5 3 9 6 4 99 777777777777 5 99999 1 000000000 6 111 4 3 444 0 1 5 5 66 5 222222222 3 8 00000 0 111 6 0 444 000000 5 8888888 77 5 5 1 77 5 5 5 2222 5 00 7777777777 1 1 0 2222 6 3 1 333333333333 6 6 999 111 1 8 6 777777777 111 1 6666666666 99 1 1 33 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 6 2222 99999 99 99 6 999999 77777 6 1 7 00 3 6 3 777777777 8 11 8 22 0 1 0 0 11 8 444 8
lowQualScore : . . . . .. . ........................... . .. . . . . . . . .. ............ . ..... . ......... . ... . . ... . . . . .. . ......... . . ..... . ... . . ... ...... . ....... .. . . . .. . . . .... . .. .......... . . . .... . . . ............ . . ... ... . . . ......... ... . .......... .. . . .. .............................................................................................. .. . .... ..... .. .. . ...... ..... . . . .. . . . ......... . .. . .. . . . . .. . ... .
lowQualScore : 6 7 3 7 33 7 888888888888888888888888888 7 22 0 7 5 3 5 7 0 22 000000000000 0 22222 7 888888888 7 000 3 0 555 0 0 0 0 99 0 333333333 2 0 00000 8 777 7 1 111 333333 7 4444444 99 7 7 4 99 7 7 0 1111 7 99 0000000000 4 4 7 9999 7 5 0 888888888888 7 7 333 888 0 0 7 333333333 777 7 3333333333 22 0 3 55 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 7 5555 22222 22 22 7 222222 88888 7 7 3 33 2 7 7 888888888 0 00 0 00 8 8 8 8 00 0 000 0
consensus : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-NCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTGTT-GAC-GNGG--TTT-TC--AA--G-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-T-AGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATT-G--CTCTTTATGC-TTTTTACACATATGTCACTATTC---------AGCATCT-CAAT-TTAT--GTTTTTA--AATTATAT-ATG-TA-T-----G-TATA---TCTACCCTGAA-TATA-----TA--TCCTTAATCCCCAC-ATTA-TAT---TGATTT-------CCTTCT--AA--TT---TTGTTA--A-------------AAA-A-----------G-T-----------AT--TCTT-G-G--CGCCATTT-G---AATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATT--A-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( family-5067 ) : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTNTTTGTTTGAC-GAGG--TTT-TC--AA--G-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATCCG-GC-T-AGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGNTAGGGTAAGTTTTAAAGAAT-TTGAGAAGANTATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GNGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATT-G--CTCTTTATGC-TTTTTACACATATGTCACTATTC---------AGCATCT-CAAT-TTAT--GTTTTTA--AATTATAT-ATG-TA-T-----G-TATA---TCTACCCTGAA-TATA-----TA--TNCTTAATCCCCAC-ATTATTAT---TGATTT-------CCTTCT--AA--TTC--TTGTTA--A-------------AAA-A-----------N-T-----------AT--TCTT-G-G--CGCCATTT-G---AATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------T-CTAT-ATATTCATT--A-CATNNTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|1 : ACTTTCGTGTCAATTTGAAGTTAAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGC-CCAAAAGGAGACATGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAAT-GAAGGACAC-----GT----C-GTGGAATTT-TG--AA--GCGCTAAGGGAAC
gi|10 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaGAACGGGTGACGAGC-AAGGT--AATAGGGGATC------T-AGGGCAATGAATGACGAGCG---GCAT----GGGT--------TAAG--TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTACTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTTAAGGGATTGTTTTTC---TT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAA-----GTG-AAGGGTCATTAG--T---TG-----TATG-TTTGTA---------AAACATTGG--CTCTTTATGC-TTTTTACACATATATCACTA-TC---------ACCATCT-CAAT-TTAT--GTTTTa
gi|11 : -TA-T-----G-TATA---TCTACCCTGAA--ATA-----TA--TGCTTAATCCCCAC-ATTATGAT---TTTCTT-------CCTTGT--AAAATTT--TTTTTACCA-------------CAA-A-----------CGT-----------AT--TCTT-G----CGCCATTT-G---AATC--TGGTGAG--GC-GGT------TCTC-A---TCTGTGCTATTGGATATTTAATA-C-AAAAAGCTTTTCTATAAT-CTAT-ATATTCATT--A-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATa
gi|12 : aCT---T-AGGTTATT-ATGTGATTTTA---GGGTT-TTTTTC---AT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAAC----GTG-AAGGGTGATTAGTTTG--TACATG-TATG-TTTGTAAAATGCAGCAAACATT-G--
gi|18 : GGTTGTTAGGGTAAGTT--AAAGAAT-TTGAGAAGAATATT-T-CCT--TTTAG-Ag
gi|2 : cggcatCACTT-CGTGTCA-CTTGAAGTTAAACG-GTAATTG--TTG-AACGTTGGTAA---------C-AC----------GTGAAGAGAACAGATGATGGA-TTA--ATTCTT-GAGAATAAGAAGA-CACTTTTTGTT-GACCGAGG--TTT-TC--AA--G--CTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-T-AGGGCAAGGAAT-----GCGAAC----GGAATGGTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATATTAT-CCT--TTTAG-ATATGTA
gi|3 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaCACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-GTGG--TTTATC--AAAAG-GCTAAGTGAGTGC-AGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGC-TTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATATT------TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTT------AGTT-TTTTTC---TTCCA--AGAATT-TAAAA-A-GG--G-CATT-GTG-AAC----GTGTAAGGGTCATTGTCTT---TGC----TATG-TTTGTAAAATGCAGCAAACATT-G--CTTTTTATGC-TTTTTACACATATGCCGCTATTC---------AGCAACT-CAAT-TTA---GTTTTTA--AATTAAAT-ATA-TA-------G-TATA---TCCACCCTGAA-TGT------TA--TCCTTAATCCCCAC-ATTATTAT---TGATTT-------CCTTCT--AA--TTC--CTGTTG--A-------------AAA-A-----------T-T-----------AT--TCTT-ATG--CGCCATTTCC---AATCTTTGGTGAT--GCAGGT------TCTC-ATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------C-TTATAATATTCATT--A-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATAc
gi|4 : CACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-GTGG--TTTATCAAAA--G-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTT-AGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATAT
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA-CTTGAAGTTAAAGGTGTAATTA--TTG-AACGCTG---A---------C-CCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTCTTTGAGAA-TAGAAGA-CACTTGTTGTT-GAC-GAGG--GTT-TT--------------TGACTGCCAGGAACAGGTGACGTGC-AAGGT------AGGG-------C-----GGCAAGTAATGACGAGCG---GCATGGACGG-TTGTTGGGACAAGTT--AAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-ACGTTAT----GTGATTTTAGG-GGGTT-TGTTTT------CA--AGAATT-TAGAA-A-GG--GACATT-GTGTAAC----GTG-AAGGGTTATTAGTTT----G-----TATG-TTTGTAAAATGCAGCAAACATT-GG-CTCTTTATGC-TTTATACACATATATCACTAT-C---------AGCATCT-CAAT-T-ATCAGTTTTTA--------------------------TATG---TCTACCCTG------A-----TA--TAC---AT----AC--TTAATA-----AA--------------CA--AA--TTA--T-GC-A--C-------------AAA-A-----------G-T-----------AT--CCTT-G----CGCCATTT-G---AATC--TGGCGAT--GC-GGT------TCTC-G---TCTGTGTTA--------TTAATA-C-AAAAAGCTTT-----------------TTCATT--A-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|6 : tattgaattatatgcagctatgtcgaaaaggcgaTGATGGA-TTA--ATTCTTTGAAAA-TAGACGA-CATTATGTGTT-GAC-GAGG--TTT-TC--AA--G-GCTAAGTGAGCGCCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------T-AGGGCAAGGAATGACGAGCG---GCATGGACAG-TTGTTGGTGTAAGTT--AAAGGAT-TTGAGAAGAATACT-T-GCT--TTTAG-ATATGTA--G-------GT-----TT-----T--T---T-GGG----------GATTTT----A--TT-TTTTTC---TGC-A--AGAATT-TAGAACG-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTGTATGT----TCAG-TTTGTAAAATGCAGCAAACATTGG--CTCTATATGC-TTTTTACACTTATGCCACTA-TC---------AGCATCT-CAAT-TTTA--GCTTTTA--AATTATAT-ATG-TATT-----G-TATA---TCTACCCTGAA--ATA-----TA--TCCTTAATCCCCAA-ATGA-------TGA------------------AA------------A--A-------------AAA-ATTAGCACAAAAG-T-----------AT--TCTT-G-G--C-CCATTT-G----ATC--TGGTGATTCGC-GGT------TCTCTG---T-TGT-TTA-TGG--ATTTAATA-C----AAGCTTT-------TGCTAT-ATATTCATT--AGCATGATATTAA-GAAAATACAGA-TAGGGGCATA-T-TAAATta
gi|7 : -CTTGAAGTTTAAAG-GT-GTTG----A-AACGTTG---A---------CTCCA---------GTAAAGAGAGAATGTAATGAA-ttt
gi|8 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaacatctttaaagttggaaaaggcaaagcccataattatattttttcaacgaattcagagaaatgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggGGCTAAGTCGTAAG--AT-TTGAGAAAAATATT-TTGCTATTTTAGCATCTGTGGTGGCGATTTTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTCT----GTGTT-CTT--CGAACTCGACTAGAATT-TAGAA-A-AGAGG-CATTTGCG-AACACCTGTT-AAAGGGCATTCGTTG---TAC----CGTGGTTTGTAAAATGCAGCACACATT-GTGCTTTTTATGC-TTTGAACACATAGGTCATTATCCTGATAGTCTAATATCT-TAAT-TTTTA-GTTTTTATAAATCATAT-ATG-TA-TCGCTTGCTATA---CC-GCTATGAAGTATAGCTTGTAAATTCTT--TCTCCACTATT--TATGCCTGATTTTTCTTAACCTTGTTGAA--TTTATTTTTTG--ATACCTCGACCAGCAAA-C-----------G-T-----------ATCATGTG-G-G--TGCC--TT-GGAGAATC--TGGTGAT--GG-CGTAATATCTCTT-C---TCTGTGTTATTGAA-ATTTAATAGCAAA
gi|9 : GTTATTGATGGTATTTTTAA-GGGTT-TTTTTT---CATCA--AGAATTATAGAA-A-GG--G-CATT-GTGTAAC----GTG-AA-GGTGATTA-TCT---TGCTACTTATGTTTTGT--AAT-CAGC-AACATT-GGCTTCTTTGTGCTTTTTTACAC-TATGTCA-TA-TC---------AGCATCTCCAATATTAT--GTTTTCA--AATTATATCATGTTA-T-----G-TATAGTTTCTA--CTAAT-TATA-----TT--TCCTT-----------------------ATCT-------CCTTCT-----------CTGTCA--A-------------AAACA-----------A-TTACCACAGTAAAT--TCTTCG-GGTTGCAATTTGG---AATC--TGGTGAT--GC-GGT------TCTC-G---T-TGTG--ATTGGATA-TTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTCAA-CATTGT----AGG--AAT-C--ATTT---GCATA-TGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 444444444444444444444444444 111111111111 44444444 222 111 1 222222222 22222 111 1 3333 1111111 1 1111 3333333333 1 1 333333333333 111 222222222 111 1 111111 77777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 11111 111111 11111 11 333333333 11 111
lowQualScore : 0 6 7 6 44 6 222222222222222222222222222 5 99 1 7 3 99 3 6 6 6 77 99 888888888888 6 99999 1 99999999 6 111 9 0 1 444 0 5 5 66 5 222222222 3 8 00000 0 111 6 7 1 7777 3 5 5 6666666 77 5 5 1 77 5 5 5 2222 5 77 0000000000 1 1 0 77 7 77 6 3 1 333333333333 6 6 999 99 0 1 8 6 777777777 111 5 6 999999 1 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555 99 99 111111 99999 99 99 6 999999 77777 6 1 7 00 3 6 6 777777777 8 8 1 6 0 0 11 8 444 8
lowQualScore : . . . . .. . ........................... . .. . . . .. . . . . .. .. ............ . ..... . ........ . ... . . . ... . . . .. . ......... . . ..... . ... . . . .... . . . ....... .. . . . .. . . . .... . .. .......... . . . .. . .. . . . ............ . . ... .. . . . . ......... ... . . ...... . .. ................................................................................ .. .. ...... ..... .. .. . ...... ..... . . . .. . . . ......... . . . . . . .. . ... .
lowQualScore : 6 7 3 7 33 7 888888888888888888888888888 7 22 0 3 5 00 7 7 7 7 77 22 555555555555 7 22222 7 22222222 7 000 3 7 4 444 0 0 0 99 0 333333333 2 0 00000 8 777 7 1 4 9999 0 7 0 7777777 99 7 7 4 99 7 7 0 1111 7 99 0000000000 4 4 7 99 1 99 7 5 0 888888888888 7 7 333 22 8 0 0 7 333333333 777 5 7 222222 0 22 22222222222222222222222222222222222222222222222222222222222222222222222222222222 22 22 888888 22222 22 22 7 222222 88888 7 7 3 33 2 7 7 888888888 0 0 0 4 8 8 00 0 000 0
consensus : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-NCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TT-GAC-G-NGG--TTT-TC--AA--G-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-T-AGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACAT--TGG--CTCTTTATGC-TTTTTACACATATGTCACTA-TC---------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T--AT---TGATTTCCTTC-TAA----T-TTGTCG--AA-------------------------AA----------A-GT--AT--TCTT-G-G--CGCCATTT-G---AATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( family-5067 ) : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-NCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TT-GAC-G-NGG--TTT-TC--AA--G-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-T-AGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACAT--T-G--CTCTTTATGC-TTTTTACACATATGTCACTATTC---------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T--AT---TGATTTCCTTC-TAA---TT-TTGTTA--AA-------------------------AA----------A-GT--AT--TCTT-G-G--CGCCATTT-G---AATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|1 : ACTTTCGTGTCAATTTGAAGTTAAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGC-CCAAAAGGAGACATGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAAT-GAAGGACAC-----G-T----C-G-TGGAATTT-TG--AA--GCGCTAAGGGAAC
gi|10 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaGAACGGGTGACGAGC-AAGGT--AATAGGGGATC------T-AGGGCAATGAATGACGAGCG---GCATGG-------GTTAAG-------TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTACTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTTAAGGGATTGTTTTTC---TT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAA-----GTG-AAGGGTCATTAG--T---TG-----TATG-TTTGTA---------AAACAT--TGG--CTCTTTATGC-TTTTTACACATATATCACTA-TC---------ACCATCT-CAAT-TTAT--GTTTT--a
gi|11 : -TA-T-G-----TATA---TCTACCCTGAA-ATATATGCT-TAA------TCCCCAC-ATTA-TG-AT---TTTCTTCCTTG-TAAAATTT-TTTTTACCAC-------------------------AA----------ACGT--AT--TCTT-G----CGCCATTT-G---AATC--TGGTGAG--GC-GGT------TCTC-A---TCTGTGCTATTGGATATTTAATA-C-AAAAAGCTTTTCTATAAT-CTAT-ATATTCATTA-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATa
gi|12 : aCT---T-AGGTTATT-ATGTGATTTTA---GGGTT-TTTTTC---AT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAAC----GTG-AAGGGTGATTAGTTTG--TACATG-TATG-TTTGTAAAATGCAGCAAACAT--T-G--
gi|18 : GGTTGTTAGGGTAAGTT--AAAGAAT-TTGAGAAGAATATT-T-CCT--TTTAG-Ag
gi|2 : cggcatCACTT-CGTGTCA-CTTGAAGTTAAACG-GTAATTG--TTG-AACGTTGGTAA---------C-AC----------GTGAAGAGAACAGATGATGGA-TTA--ATTCTT-GAGAATAAGAAGA-CACTTTTTG-TT-GACCG-AGG--TTT-TC--AA--G--CTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-T-AGGGCAAGGAAT-----GCGAAC----GGAATGGTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATATTAT-CCT--TTTAG-ATATGTA
gi|3 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaCACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTG-TTTGAC-G-TGG--TTTATC--AAAAG-GCTAAGTGAGTGC-AGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGC-TTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATATT------TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTT------AGTT-TTTTTC---TTCCA--AGAATT-TAAAA-A-GG--G-CATT-GTG-AAC----GTGTAAGGGTCATTGTCTT---TGC----TATG-TTTGTAAAATGCAGCAAACAT--T-G--CTTTTTATGC-TTTTTACACATATGCCGCTATTC---------AGCAACT-CAAT-TTA---GTTTT--TAAATTAAAT-ATA-TA---G-----TATA---TCCACCCTGAATGT-TATCCT-TAA------TCCCCAC-ATTATT--AT---TGATTTCCTTC-TAA---TTCCTGTTG--AA-------------------------AA----------A-TT--AT--TCTT-ATG--CGCCATTTCC---AATCTTTGGTGAT--GCAGGT------TCTC-ATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------C-TTATAATATTCATTA-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATAc
gi|4 : CACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTT-GAC-G-TGG--TTTATCAAAA--G-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTT-AGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATAT
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA-CTTGAAGTTAAAGGTGTAATTA--TTG-AACGCTG---A---------C-CCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTCTTTG-AGAATAGAAG-ACACTTGTTG-TT-GAC-GAGGG--TTT-T---------------TGACTGCCAGGAACAGGTGACGTG-CAAGGT------AGGG--C----------GGCAAGTAATGACGAGCG---GCATGGAC-GGTTGTTGGGACAAG--TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-ACG---TT-ATGTGATTTTAGG-GGGTT-TGT------TTTCA--AGAATT-TAGAA-A-GG--GACATT-GTGTAAC----GTG-AAGGGTTATTAG-TT---TG-----TATG-TTTGTAAAATGCAGCAAACAT--TGG--CTCTTTATGC-TTTATACACATATATCACTA-TC---------AGCATCT-CAA--TTATCAGTTTT--TA------------------------TATG---TCTACCCTG-ATATACATACT-TAA------TAAACAA-ATTA-T--G-----------------------------CA--CA-------------------------AA----------A-GT--AT--CCTT---G--CGCCATTT-G---AATC--TGGCGAT--GC-GGT------TCTC-G---TCTGTGTTA--------TTAATA-C-AAAAAGCTTT-----------------TTCATTA-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|6 : tattgaattatatgcagctatgtcgaaaaggcgaTGATGGA-TTA--ATTCTTTGAAAA-TAGACGA-CATTATGTG-TT-GAC-G-AGG--TTT-TC--AA--G-GCTAAGTGAGCGCCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------T-AGGGCAAGGAATGACGAGCG---GCATGGACAG-TTGTTGGTGTAAGTT--AAAGGAT-TTGAGAAGAATACT-T-GCT--TTTAG-ATATGTA--G-------GT-----TT-----T--T---T-GGG----------GATTTT----A--TT-TTTTTC---TGC-A--AGAATT-TAGAACG-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTGTATGT----TCAG-TTTGTAAAATGCAGCAAACAT--TGG--CTCTATATGC-TTTTTACACTTATGCCACTA-TC---------AGCATCT-CAAT-TTTA--GCTTT--TAAATTATAT-ATG-TATT-G-----TATA---TCTACCCTGAA-ATATATCCT-TAA------TCCCCAA-ATGA-TGAAA---AAA----------AA---AT-TAG-CA--CA-------------------------AA----------A-GT--AT--TCTT-G-G--C-CCATTT-G----ATC--TGGTGATTCGC-GGT------TCTCTG---T-TGT-TTA-TGG--ATTTAATA-C----AAGCTTT-------TGCTAT-ATATTCATTAGCATGATATTAA-GAAAATACAGA-TAGGGGCATA-T-TAAATta
gi|7 : -CTTGAAGTTTAAAG-GT-GTTG----A-AACGTTG---A---------CTCCA---------GTAAAGAGAGAATGTAATGAA-ttt
gi|8 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaacatctttaaagttggaaaaggcaaagcccataattatattttttcaacgaattcagagaaatgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggGGCTAAGTCGTAAG--AT-TTGAGAAAAATATT-TTGCTATTTTAGCATCTGTGGTGGCGATTTTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTCT----GTGTT-CTT--CGAACTCGACTAGAATT-TAGAA-A-AGAGG-CATTTGCG-AACACCTGTT-AAAGGGCATTCGTTG---TAC----CGTGGTTTGTAAAATGCAGCACACATTGT-G--CTTTTTATGC-TTTGAACACATAGGTCATTATCCTGATAGTCTAATATCT-TAAT-TTTTA-GTTTTTATAAATCATAT-ATG-TA-TCGCTTGCTATA----CCGCTATGAA-GTATAGCTTGTAAATTCTTTCTCCACTATT--T--ATGCCTGATTT--TTCTTAA---CC-TTGTTG--AATTTATTTTTTGATACCTCGACCAGCAA----------ACGT--ATCATGTG-G-G--TGCC--TT-GGAGAATC--TGGTGAT--GG-CGTAATATCTCTT-C---TCTGTGTTATTGAA-ATTTAATAGC-AAA
gi|9 : GTTATTGATGGTATTTTTAA-GGGTT-TTTTTT---CATCA--AGAATTATAGAA-A-GG--G-CATT-GTGTAAC----GTG-AA-GGTGATTA-TCT---TGCTACTTATGTTTTGT--AAT-CAGC-AACAT--T-GGCTTCTTTGTGCTTTTTTACAC-TATGTCA-TA-TC---------AGCATCTCCAATATTAT--GTTTT--CAAATTATATCATGTTA-T-G-----TATAGTTTCTA--CTAATTATATTTCCT-T-------------------------------ATCTCCTTC--------T-CTGTCA--AA-------------------------AACAATTACCACA-GTAAAT--TCTTCG-GGTTGCAATTTGG---AATC--TGGTGAT--GC-GGT------TCTC-G---T-TGTG--ATTGGATA-TTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTC-AACATTGT--AGG--AAT-C--ATTT---GCATA-TGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 444444444444444444444444444 1 22222 1 555555 222 111 1 222222222 22222 111 1 3333 1111111 1 1111 3333333333 1 2222222222 111 222222222 111 1 111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222 222 111111 11111 11 333333333 11 111
lowQualScore : 0 6 7 6 44 6 222222222222222222222222222 5 99 1 7 3 99 3 3 6 77 99 55555 99 0 6 99999 1 444444 6 111 9 0 1 444 0 5 5 66 5 222222222 3 8 00000 0 111 6 7 1 7777 3 5 5 6666666 77 5 5 1 77 5 5 5 2222 5 77 0000000000 1 1 0 5 6 6 3 1 6 9999999999 6 6 999 99 0 1 8 6 777777777 111 5 6 999999 1 99 888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 99 111111 555 99 99 6 999999 77777 6 1 7 00 3 6 6 777777777 8 8 1 6 0 0 11 8 444 8
lowQualScore : . . . . .. . ........................... . .. . . . .. . . . .. .. ..... .. . . ..... . ...... . ... . . . ... . . . .. . ......... . . ..... . ... . . . .... . . . ....... .. . . . .. . . . .... . .. .......... . . . . . . . . . .......... . . ... .. . . . . ......... ... . . ...... . .. ................................................................................. .. .. ...... ... .. .. . ...... ..... . . . .. . . . ......... . . . . . . .. . ... .
lowQualScore : 6 7 3 7 33 7 888888888888888888888888888 7 22 0 3 5 00 7 3 7 77 22 22222 22 0 7 22222 7 222222 7 000 3 7 4 444 0 0 0 99 0 333333333 2 0 00000 8 777 7 1 4 9999 0 7 0 7777777 99 7 7 4 99 7 7 0 1111 7 99 0000000000 4 4 7 7 7 7 5 0 7 2222222222 7 7 333 22 8 0 0 7 333333333 777 5 7 222222 0 22 333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 22 888888 000 22 22 7 222222 88888 7 7 3 33 2 7 7 888888888 0 0 0 4 8 8 00 0 000 0
consensus : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-NCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTT-------CCTT-T--AA-------TT--TG------------TCGN-----AAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( family-5067 ) : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-NCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTT-------CCTTCT--AA-------TT--TG------------TCGA-----AAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|1 : ACTTTCGTGTCAATTTGAAGTTAAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGC-CCAAAAGGAGACATGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAAT-GAAGGACAC-----G-T---C-G-TGGAATTT-TG--AAGCGCTAAGGGAAC
gi|10 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaGAACGGGTGACGAGC-AAGGT--AATAGGGGATC------TAGGGCAATGAATGACGAGCG---GCATGG-------GTTAAG-------TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTACTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTTAAGGGATTGTTTTTC---TT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAA-----GTG-AAGGGTCATTAG--T---TG-----TATG-TTTGTA---------AAACATTG-GC-TCTTTATGC-TTTTTACACATATATCACTA-TC----------ACCATCT-CAAT-TTAT--GTTTT--a
gi|11 : -TA-T-G-----TATA---TCTACCCTGAA-ATATATGCT-TAA------TCCCCAC-ATTA-TG--AT---TTTCTT-------CCTTGT--AAAATTTTTTT--TA------------CCAC-----AAA----------CGT--AT--TCTT-G----CGCCATTT---GAATC--TGGTGAG--GC-GGT------TCTC-A---TCTGTGCTATTGGATATTTAATA-C-AAAAAGCTTTTCTATAAT-CTAT-ATATTCATTA-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATa
gi|12 : aCT---T-AGGTTATT-ATGTGATTTTA---GGGTT-TTTTTC---AT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAAC----GTG-AAGGGTGATTAGTTTG--TACATG-TATG-TTTGTAAAATGCAGCAAACATTG-G
gi|18 : GGTTGTTAGGGTAAGTT--AAAGAAT-TTGAGAAGAATATT-T-CCT--TTTAG-A
gi|2 : cggcatCACTT-CGTGTCA-CTTGAAGTTAAACG-GTAATTG--TTG-AACGTTGGTAA---------C-AC----------GTGAAGAGAACAGATGATGGA-TTA--ATTCTT-GAGAATAAGAAGA-CACTTTTTG-TTGACCG-AGG--TTT-TC--AAG--CTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-TAGGGCAAGGAAT-----GCGAAC----GGAATGGTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATATTAT-CCT--TTTAG-ATATGTA
gi|3 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaCACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-G-TGG--TTTATCAAAAG-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATATT------TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTT------AGTT-TTTTTC---TTCCA--AGAATT-TAAAA-A-GG--G-CATT-GTG-AAC----GTGTAAGGGTCATTGTCTT---TGC----TATG-TTTGTAAAATGCAGCAAACATT--GC-TTTTTATGC-TTTTTACACATATGCCGCTATTC----------AGCAACT-CAAT-TTA---GTTTT--TAAATTAAAT-ATA-TA---G-----TATA---TCCACCCTGAATGT-TATCCT-TAA------TCCCCAC-ATTATT---AT---TGATTT-------CCTTCT--AA-------TTCCTG------------TTGA-----AAA----------ATT--AT--TCTT-ATG--CGCCATTTC--CAATCTTTGGTGAT--GCAGGT------TCTC-ATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------C-TTATAATATTCATTA-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATAc
gi|4 : CACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-G-TGG--TTTATCAAAAG-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATAT
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA-CTTGAAGTTAAAGGTGTAATTA--TTG-AACGCTG---A---------C-CCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTCTTTG-AGAATAGAAG-ACACTTGTTG-TTGAC-GAGGG--TTT-T-------------TGACTGCCAGGAACAGGTGACGTG-CAAGGT------AGGG--C---------GGCAAGTAATGACGAGCG---GCATGGAC-GGTTGTTGGGACAAG--TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-ACG---TT-ATGTGATTTTAGG-GGGTT-TGT------TTTCA--AGAATT-TAGAA-A-GG--GACATT-GTGTAAC----GTG-AAGGGTTATTAG-TT---TG-----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTATACACATATATCACTA-TC----------AGCATCT-CAA--TTATCAGTTTT--TA------------------------TATG---TCTACCCTG-ATATACATACT-TAA------TAAACAA-ATTA-T---G-----------------------------------------------------CAC-----AAA----------AGT--AT--CCTT---G--CGCCATTT---GAATC--TGGCGAT--GC-GGT------TCTC-G---TCTGTGTTA--------TTAATA-C-AAAAAGCTTT-----------------TTCATTA-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|6 : tattgaattatatgcagctatgtcgaaaaggcgaTGATGGA-TTA--ATTCTTTGAAAA-TAGACGA-CATTATGTG-TTGAC-G-AGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------TAGGGCAAGGAATGACGAGCG---GCATGGACAG-TTGTTGGTGTAAGTT--AAAGGAT-TTGAGAAGAATACT-T-GCT--TTTAG-ATATGTA--G-------GT-----TT-----T--T---T-GGG----------GATTTT----A--TT-TTTTTC---TGC-A--AGAATT-TAGAACG-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTGTATGT----TCAG-TTTGTAAAATGCAGCAAACATTG-GC-TCTATATGC-TTTTTACACTTATGCCACTA-TC----------AGCATCT-CAAT-TTTA--GCTTT--TAAATTATAT-ATG-TATT-G-----TATA---TCTACCCTGAA-ATATATCCT-TAA------TCCCCAA-ATGA-TGAAAA---AAA------------------AA-------TT--AG-------------CAC-----AAA----------AGT--AT--TCTT-G-G--C-CCATTT---G-ATC--TGGTGATTCGC-GGT------TCTCTG---T-TGT-TTA-TGG--ATTTAATA-C----AAGCTTT-------TGCTAT-ATATTCATTAGCATGATATTAA-GAAAATACAGA-TAGGGGCATA-T-TAAATta
gi|7 : -CTTGAAGTTTAAAG-GT-GTTG----A-AACGTTG---A---------CTCCA---------GTAAAGAGAGAATGTAATGAA-ttt
gi|8 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaacatctttaaagttggaaaaggcaaagcccataattatattttttcaacgaattcagagaaatgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggGGCTAAGTCGTAAG--AT-TTGAGAAAAATATT-TTGCTATTTTAGCATCTGTGGTGGCGATTTTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTCT----GTGTT-CTT--CGAACTCGACTAGAATT-TAGAA-A-AGAGG-CATTTGCG-AACACCTGTT-AAAGGGCATTCGTTG---TAC----CGTGGTTTGTAAAATGCAGCACACATTGTGC-TTTTTATGC-TTTGAACACATAGGTCATTA-TCCTGATAGTCTAATATCT-TAAT-TTTTA-GTTTTTATAAATCATAT-ATG-TA-TCGCTTGCTATA----CCGCTATGAA-GTATAGCTTGTAAATTCTTTCTCCACTATT--T---ATGCCTGATTTTTCTTAACCTTGTTGAA-------TT--TATTTTTTGATACCTCGACCAGCAAA----------CGT--ATCATGTG-G-G--TGCC--TTGGAGAATC--TGGTGAT--GG-CGTAATATCTCTT-C---TCTGTGTTATTGAA-ATTTAATAGC-AAA
gi|9 : GTTATTGATGGTATTTTTAA-GGGTT-TTTTTT---CATCA--AGAATTATAGAA-A-GG--G-CATT-GTGTAAC----GTG-AA-GGTGATTA-TCT---TGCTACTTATGTTTTGT--AAT-CAGC-AACATTG-GCTTCTTTGTGCTTTTTTACAC-TATGTCA-TA-TC----------AGCATCTCCAATATTAT--GTTTT--CAAATTATATCATGTTA-T-G-----TATAGTTTCTA--CTAATTATATTTCCT-T--------------------------------ATCT-------CCTTC------------TC--TG------------TCAA-----AAACAATTACCACAGTAAAT--TCTTCG-GGTTGCAATTTG--GAATC--TGGTGAT--GC-GGT------TCTC-G---T-TGTG--ATTGGATA-TTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTC-AACATTGT--AGG--AAT-C--ATTT---GCATA-TGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 3333333333333333333333333333 1 22222 1 555555 222 111 1 222222222 22222 111 1 3333 1111111 1 1111 3333333333 1 2222222222 111 222222222 111 1 111111 777777777777777777777777777777777777777777777777777777777777777777777777777 222222 222 111111 11111 11 333333333 11 111
lowQualScore : 0 6 7 6 44 6 5555555555555555555555555555 5 99 1 7 3 99 3 3 6 77 99 55555 99 0 6 99999 1 444444 6 111 9 0 1 444 0 5 5 66 5 222222222 3 8 00000 0 111 6 7 1 7777 3 5 5 6666666 77 5 5 1 77 5 5 5 2222 5 77 0000000000 1 1 0 5 6 6 3 1 6 9999999999 6 6 999 99 0 1 8 6 777777777 111 5 6 999999 1 99 555555555555555555555555555555555555555555555555555555555555555555555555555 99 99 111111 555 99 99 6 999999 77777 6 1 7 00 3 6 6 777777777 8 8 1 6 0 0 11 8 444 8
lowQualScore : . . . . .. . ............................ . .. . . . .. . . . .. .. ..... .. . . ..... . ...... . ... . . . ... . . . .. . ......... . . ..... . ... . . . .... . . . ....... .. . . . .. . . . .... . .. .......... . . . . . . . . . .......... . . ... .. . . . . ......... ... . . ...... . .. ........................................................................... .. .. ...... ... .. .. . ...... ..... . . . .. . . . ......... . . . . . . .. . ... .
lowQualScore : 6 7 3 7 33 7 5555555555555555555555555555 7 22 0 3 5 00 7 3 7 77 22 22222 22 0 7 22222 7 222222 7 000 3 7 4 444 0 0 0 99 0 333333333 2 0 00000 8 777 7 1 4 9999 0 7 0 7777777 99 7 7 4 99 7 7 0 1111 7 99 0000000000 4 4 7 7 7 7 5 0 7 2222222222 7 7 333 22 8 0 0 7 333333333 777 5 7 222222 0 22 000000000000000000000000000000000000000000000000000000000000000000000000000 22 22 888888 000 22 22 7 222222 88888 7 7 3 33 2 7 7 888888888 0 0 0 4 8 8 00 0 000 0
consensus : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-NCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( family-5067 ) : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-NCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----NAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|1 : ACTTTCGTGTCAATTTGAAGTTAAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGC-CCAAAAGGAGACATGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAAT-GAAGGACAC-----G-T---C-G-TGGAATTT-TG--AAGCGCTAAGGGAAC
gi|10 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaGAACGGGTGACGAGC-AAGGT--AATAGGGGATC------TAGGGCAATGAATGACGAGCG---GCATGG-------GTTAAG-------TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTACTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTTAAGGGATTGTTTTTC---TT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAA-----GTG-AAGGGTCATTAG--T---TG-----TATG-TTTGTA---------AAACATTG-GC-TCTTTATGC-TTTTTACACATATATCACTA-TC----------ACCATCT-CAAT-TTAT--GTTTT--a
gi|11 : -TA-T-G-----TATA---TCTACCCTGAA-ATATATGCT-TAA------TCCCCAC-ATTA-TG--AT---TTTCTTCCTTGTAAAATTTTT----------TT--TA-----CCA-----CAAA----------CGT--AT--TCTT-G----CGCCATTT---GAATC--TGGTGAG--GC-GGT------TCTC-A---TCTGTGCTATTGGATATTTAATA-C-AAAAAGCTTTTCTATAAT-CTAT-ATATTCATTA-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATa
gi|12 : aCT---T-AGGTTATT-ATGTGATTTTA---GGGTT-TTTTTC---AT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAAC----GTG-AAGGGTGATTAGTTTG--TACATG-TATG-TTTGTAAAATGCAGCAAACATTG-G
gi|18 : GGTTGTTAGGGTAAGTT--AAAGAAT-TTGAGAAGAATATT-T-CCT--TTTAG-A
gi|2 : cggcatCACTT-CGTGTCA-CTTGAAGTTAAACG-GTAATTG--TTGAA-CGTTGGTAA---------C-AC-G---------TGAAGAGAACAGATGATGGA-TTA--ATTCTT-GAGAATAAGAAGA-CACTTTTTG-TTGACCG-AGG--TTT-TC--AAG--CTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-TAGGGCAAGGAAT-----GCGAAC----GGAATGGTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATATTAT-CCT--TTTAG-ATATGTA
gi|3 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaCACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-ACAG---------TAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-G-TGG--TTTATCAAAAG-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATATT------TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTT------AGTT-TTTTTC---TTCCA--AGAATT-TAAAA-A-GG--G-CATT-GTG-AAC----GTGTAAGGGTCATTGTCTT---TGC----TATG-TTTGTAAAATGCAGCAAACATT--GC-TTTTTATGC-TTTTTACACATATGCCGCTATTC----------AGCAACT-CAAT-TTA---GTTTT--TAAATTAAAT-ATA-TA---G-----TATA---TCCACCCTGAATGT-TATCCT-TAA------TCCCCAC-ATTATT---AT---TGATTTCCTTCTAA-----------------TTCCTG-----TTG-----AAAA----------ATT--AT--TCTT-ATG--CGCCATTTC--CAATCTTTGGTGAT--GCAGGT------TCTC-ATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------C-TTATAATATTCATTA-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATAc
gi|4 : CACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-ACAG---------TAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-G-TGG--TTTATCAAAAG-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATAT
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA-CTTGAAGTTAAAGGTGTAATTA--TTGAA-CGCTG---A---------C-CCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTCTTTG-AGAATAGAAG-ACACTTGTTG-TTGAC-GAGGG--TTT-T-------------TGACTGCCAGGAACAGGTGACGTG-CAAGGT------AGGG--C---------GGCAAGTAATGACGAGCG---GCATGGAC-GGTTGTTGGGACAAG--TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-ACG---TT-ATGTGATTTTAGG-GGGTT-TGT------TTTCA--AGAATT-TAGAA-A-GG--GACATT-GTGTAAC----GTG-AAGGGTTATTAG-TT---TG-----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTATACACATATATCACTA-TC----------AGCATCT-CAA--TTATCAGTTTT--TA------------------------TATG---TCTACCCTG-ATATACATACT-TAA------TAAACAA-ATTA-T---G-----------------------------------------------CA-----CAAA----------AGT--AT--CCTT---G--CGCCATTT---GAATC--TGGCGAT--GC-GGT------TCTC-G---TCTGTGTTA--------TTAATA-C-AAAAAGCTTT-----------------TTCATTA-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|6 : tattgaattatatgcagctatgtcgaaaaggcgaTGATGGA-TTA--ATTCTTTGAAAA-TAGACGA-CATTATGTG-TTGAC-G-AGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------TAGGGCAAGGAATGACGAGCG---GCATGGACAG-TTGTTGGTGTAAGTT--AAAGGAT-TTGAGAAGAATACT-T-GCT--TTTAG-ATATGTA--G-------GT-----TT-----T--T---T-GGG----------GATTTT----A--TT-TTTTTC---TGC-A--AGAATT-TAGAACG-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTGTATGT----TCAG-TTTGTAAAATGCAGCAAACATTG-GC-TCTATATGC-TTTTTACACTTATGCCACTA-TC----------AGCATCT-CAAT-TTTA--GCTTT--TAAATTATAT-ATG-TATT-G-----TATA---TCTACCCTGAA-ATATATCCT-TAA------TCCCCAA-ATGA-TGAAAA---AAA---------AA-----------------TT--AG------CA-----CAAA----------AGT--AT--TCTT-G-G--C-CCATTT---G-ATC--TGGTGATTCGC-GGT------TCTCTG---T-TGT-TTA-TGG--ATTTAATA-C----AAGCTTT-------TGCTAT-ATATTCATTAGCATGATATTAA-GAAAATACAGA-TAGGGGCATA-T-TAAATta
gi|7 : -CTTGAAGTTTAAAG-GT-GTTG----AAA-CGTTG---A---------CTCCAG---------TAAAGAGAGAATGTAATGAA-ttt
gi|8 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaacatctttaaagttggaaaaggcaaagcccataattatattttttcaacgaattcagagaaatgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggGGCTAAGTCGTAAG--AT-TTGAGAAAAATATT-TTGCTATTTTAGCATCTGTGGTGGCGATTTTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTCT----GTGTT-CTT--CGAACTCGACTAGAATT-TAGAA-A-AGAGG-CATTTGCG-AACACCTGTT-AAAGGGCATTCGTTG---TAC----CGTGGTTTGTAAAATGCAGCACACATTGTGC-TTTTTATGC-TTTGAACACATAGGTCATTA-TCCTGATAGTCTAATATCT-TAAT-TTTTA-GTTTTTATAAATCATAT-ATG-TA-TCGCTTGCTATA----CCGCTATGAA-GTATAGCTTGTAAATTCTTTCTCCACTATT--T---ATGCCTGATTTTTCT-TAACCTTGTTGAATTTATTTTT--TGATACCTCGACCAGCAAA----------CGT--ATCATGTG-G-G--TGCC--TTGGAGAATC--TGGTGAT--GG-CGTAATATCTCTT-C---TCTGTGTTATTGAA-ATTTAATAGC-AAA
gi|9 : GTTATTGATGGTATTTTTAA-GGGTT-TTTTTT---CATCA--AGAATTATAGAA-A-GG--G-CATT-GTGTAAC----GTG-AA-GGTGATTA-TCT---TGCTACTTATGTTTTGT--AAT-CAGC-AACATTG-GCTTCTTTGTGCTTTTTTACAC-TATGTCA-TA-TC----------AGCATCTCCAATATTAT--GTTTT--CAAATTATATCATGTTA-T-G-----TATAGTTTCTA--CTAATTATATTTCCT-T--------------------------------ATCTCCTT-C-------------------TC--TG-----TCA-----AAAACAATTACCACAGTAAAT--TCTTCG-GGTTGCAATTTG--GAATC--TGGTGAT--GC-GGT------TCTC-G---T-TGTG--ATTGGATA-TTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTC-AACATTGT--AGG--AAT-C--ATTT---GCATA-TGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 3333333333333333333333333333 1 22222 1 555555 222 111 1 222222222 22222 111 1 3333 1111111 1 1111 3333333333 1 2222222222 111 222222222 111 1 111111 777777777777777777777777777777777777777777777777777777777777777777777777777 222222 222 111111 11111 11 333333333 11 111
lowQualScore : 0 6 7 6 44 6 5555555555555555555555555555 5 99 1 7 3 99 3 3 6 77 99 55555 99 0 6 99999 1 444444 6 111 9 0 1 444 0 5 5 66 5 222222222 3 8 00000 0 111 6 7 1 7777 3 5 5 6666666 77 5 5 1 77 5 5 5 2222 5 77 0000000000 1 1 0 5 6 6 3 1 6 9999999999 6 6 999 99 0 1 8 6 777777777 111 5 6 999999 1 99 222222222222222222222222222222222222222222222222222222222222222222222222222 99 99 111111 555 99 99 6 999999 77777 6 1 7 00 3 6 6 777777777 8 8 1 6 0 0 11 8 444 8
lowQualScore : . . . . .. . ............................ . .. . . . .. . . . .. .. ..... .. . . ..... . ...... . ... . . . ... . . . .. . ......... . . ..... . ... . . . .... . . . ....... .. . . . .. . . . .... . .. .......... . . . . . . . . . .......... . . ... .. . . . . ......... ... . . ...... . .. ........................................................................... .. .. ...... ... .. .. . ...... ..... . . . .. . . . ......... . . . . . . .. . ... .
lowQualScore : 6 7 3 7 33 7 5555555555555555555555555555 7 22 0 3 5 00 7 3 7 77 22 22222 22 0 7 22222 7 222222 7 000 3 7 4 444 0 0 0 99 0 333333333 2 0 00000 8 777 7 1 4 9999 0 7 0 7777777 99 7 7 4 99 7 7 0 1111 7 99 0000000000 4 4 7 7 7 7 5 0 7 2222222222 7 7 333 22 8 0 0 7 333333333 777 5 7 222222 0 22 333333333333333333333333333333333333333333333333333333333333333333333333333 22 22 888888 000 22 22 7 222222 88888 7 7 3 33 2 7 7 888888888 0 0 0 4 8 8 00 0 000 0
consensus : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-NCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( family-5067 ) : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-NCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|1 : ACTTTCGTGTCAATTTGAAGTTAAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGC-CCAAAAGGAGACATGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAAT-GAAGGACAC-----G-T---C-G-TGGAATTT-TG--AAGCGCTAAGGGAAC
gi|10 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaGAACGGGTGACGAGC-AAGGT--AATAGGGGATC------TAGGGCAATGAATGACGAGCG---GCATGG-------GTTAAG-------TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTACTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTTAAGGGATTGTTTTTC---TT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAA-----GTG-AAGGGTCATTAG--T---TG-----TATG-TTTGTA---------AAACATTG-GC-TCTTTATGC-TTTTTACACATATATCACTA-TC----------ACCATCT-CAAT-TTAT--GTTTT--a
gi|11 : -TA-T-G-----TATA---TCTACCCTGAA-ATATATGCT-TAA------TCCCCAC-ATTA-TG--AT---TTTCTTCCTTGTAAAATTTTT----------TT--TA-----CCA-----CAAA----------CGT--AT--TCTT-G----CGCCATTT---GAATC--TGGTGAG--GC-GGT------TCTC-A---TCTGTGCTATTGGATATTTAATA-C-AAAAAGCTTTTCTATAAT-CTAT-ATATTCATTA-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATa
gi|12 : aCT---T-AGGTTATT-ATGTGATTTTA---GGGTT-TTTTTC---AT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAAC----GTG-AAGGGTGATTAGTTTG--TACATG-TATG-TTTGTAAAATGCAGCAAACATTG-G
gi|18 : GGTTGTTAGGGTAAGTT--AAAGAAT-TTGAGAAGAATATT-T-CCT--TTTAG-A
gi|2 : cggcatCACTT-CGTGTCA-CTTGAAGTTAAACG-GTAATTG--TTGAA-CGTTGGTAA---------C-AC-G---------TGAAGAGAACAGATGATGGA-TTA--ATTCTT-GAGAATAAGAAGA-CACTTTTTG-TTGACCG-AGG--TTT-TC--AAG--CTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-TAGGGCAAGGAAT-----GCGAAC----GGAATGGTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATATTAT-CCT--TTTAG-ATATGTA
gi|3 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaCACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-ACAG---------TAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-G-TGG--TTTATCAAAAG-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATATT------TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTT------AGTT-TTTTTC---TTCCA--AGAATT-TAAAA-A-GG--G-CATT-GTG-AAC----GTGTAAGGGTCATTGTCTT---TGC----TATG-TTTGTAAAATGCAGCAAACATT--GC-TTTTTATGC-TTTTTACACATATGCCGCTATTC----------AGCAACT-CAAT-TTA---GTTTT--TAAATTAAAT-ATA-TA---G-----TATA---TCCACCCTGAATGT-TATCCT-TAA------TCCCCAC-ATTATT---AT---TGATTTCCTTCTAA-----------------TTCCTG-----TTG-----AAAA----------ATT--AT--TCTT-ATG--CGCCATTTC--CAATCTTTGGTGAT--GCAGGT------TCTC-ATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------C-TTATAATATTCATTA-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATAc
gi|4 : CACTTTCGTGTCA-CT-------AAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-ACAG---------TAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGAC-G-TGG--TTTATCAAAAG-GCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATAT
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA-CTTGAAGTTAAAGGTGTAATTA--TTGAA-CGCTG---A---------C-CCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTCTTTG-AGAATAGAAG-ACACTTGTTG-TTGAC-GAGGG--TTT-T-------------TGACTGCCAGGAACAGGTGACGTG-CAAGGT------AGGG--C---------GGCAAGTAATGACGAGCG---GCATGGAC-GGTTGTTGGGACAAG--TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-ACG---TT-ATGTGATTTTAGG-GGGTT-TGT------TTTCA--AGAATT-TAGAA-A-GG--GACATT-GTGTAAC----GTG-AAGGGTTATTAG-TT---TG-----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTATACACATATATCACTA-TC----------AGCATCT-CAA--TTATCAGTTTT--TA------------------------TATG---TCTACCCTG-ATATACATACT-TAA------TAAACAA-ATTA-T---G-----------------------------------------------CA-----CAAA----------AGT--AT--CCTT---G--CGCCATTT---GAATC--TGGCGAT--GC-GGT------TCTC-G---TCTGTGTTA--------TTAATA-C-AAAAAGCTTT-----------------TTCATTA-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|6 : tattgaattatatgcagctatgtcgaaaaggcgaTGATGGA-TTA--ATTCTTTGAAAA-TAGACGA-CATTATGTG-TTGAC-G-AGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------TAGGGCAAGGAATGACGAGCG---GCATGGACAG-TTGTTGGTGTAAGTT--AAAGGAT-TTGAGAAGAATACT-T-GCT--TTTAG-ATATGTA--G-------GT-----TT-----T--T---T-GGG----------GATTTT----A--TT-TTTTTC---TGC-A--AGAATT-TAGAACG-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTGTATGT----TCAG-TTTGTAAAATGCAGCAAACATTG-GC-TCTATATGC-TTTTTACACTTATGCCACTA-TC----------AGCATCT-CAAT-TTTA--GCTTT--TAAATTATAT-ATG-TATT-G-----TATA---TCTACCCTGAA-ATATATCCT-TAA------TCCCCAA-ATGA-TGAAAA---AAA---------AA-----------------TT--AG------CA-----CAAA----------AGT--AT--TCTT-G-G--C-CCATTT---G-ATC--TGGTGATTCGC-GGT------TCTCTG---T-TGT-TTA-TGG--ATTTAATA-C----AAGCTTT-------TGCTAT-ATATTCATTAGCATGATATTAA-GAAAATACAGA-TAGGGGCATA-T-TAAATta
gi|7 : -CTTGAAGTTTAAAG-GT-GTTG----AAA-CGTTG---A---------CTCCAG---------TAAAGAGAGAATGTAATGAA-ttt
gi|8 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaacatctttaaagttggaaaaggcaaagcccataattatattttttcaacgaattcagagaaatgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggGGCTAAGTCGTAAG--AT-TTGAGAAAAATATT-TTGCTATTTTAGCATCTGTGGTGGCGATTTTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTCT----GTGTT-CTT--CGAACTCGACTAGAATT-TAGAA-A-AGAGG-CATTTGCG-AACACCTGTT-AAAGGGCATTCGTTG---TAC----CGTGGTTTGTAAAATGCAGCACACATTGTGC-TTTTTATGC-TTTGAACACATAGGTCATTA-TCCTGATAGTCTAATATCT-TAAT-TTTTA-GTTTTTATAAATCATAT-ATG-TA-TCGCTTGCTATA----CCGCTATGAA-GTATAGCTTGTAAATTCTTTCTCCACTATT--T---ATGCCTGATTTTTCT-TAACCTTGTTGAATTTATTTTT--TGATACCTCGACCAGCAAA----------CGT--ATCATGTG-G-G--TGCC--TTGGAGAATC--TGGTGAT--GG-CGTAATATCTCTT-C---TCTGTGTTATTGAA-ATTTAATAGC-AAA
gi|9 : GTTATTGATGGTATTTTTAA-GGGTT-TTTTTT---CATCA--AGAATTATAGAA-A-GG--G-CATT-GTGTAAC----GTG-AA-GGTGATTA-TCT---TGCTACTTATGTTTTGT--AAT-CAGC-AACATTG-GCTTCTTTGTGCTTTTTTACAC-TATGTCA-TA-TC----------AGCATCTCCAATATTAT--GTTTT--CAAATTATATCATGTTA-T-G-----TATAGTTTCTA--CTAATTATATTTCCT-T--------------------------------ATCTCCTT-C-------------------TC--TG-----TCA-----AAAACAATTACCACAGTAAAT--TCTTCG-GGTTGCAATTTG--GAATC--TGGTGAT--GC-GGT------TCTC-G---T-TGTG--ATTGGATA-TTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTC-AACATTGT--AGG--AAT-C--ATTT---GCATA-TGTAA
blockSeqs : T . T T C . GTAACACG . . C A T AA T T C AG . ATCAA G C C TGACA A CGAGCT G AAC T G TTT C A T AT C GTGGCGATT C C ACGCT AAT G T T AGG G . T GAACTCG CT A C G AG A T T ACCT T GT GTACATG G A T T T A C T CTGATAGTCT C A TCA TA T C T TCGCTTGC GTT T G ATTCTT C CT TATGCCTGATTTTTCTTAACCTTGTTGAATTTATTTTTTGATACCTCGACCAGCAAA AA CA CGGGT GGA TT TC A AATATC ATAT C T T AT T G A TG A G T C AG T GGG T
blockSeqs : T . T . C . ACTCCAG . . A A A AA A T . A . ATCAA G C C TGACA A CGAGCT G AAC G G TTT C . . . . TTGT C . . . . T G TAA A . T TTCC . . . . . . . T . . TC TGCTACT T A . . . A C . . . . TA . T . . TTG . T . . A C ATTATTGATTTCCTTCTAATTCCTGTTGAAAA . . ATG C . . . . TG C T T AT T . . C . . C T . . . .
blockSeqs : . . T . . . ACACAG . . A A A A A . . T . TC G . C TGACA A GC G AAC G G TCG . . . . . TTT T . . . . C . A G . T TTTC . . . . . . . T . . GT GTATGT . A . . . T C . . . . A . T . . TG . T . . C A ATCTCCTTCTCTGTCAAAAACAATTACCAC . . GG G . . . . G C T T A T . . T . . G T . . . .
blockSeqs : . . . . . . ACACAG . . C A A A T . . T . TC . . C TAAC A . . . A G TT . . . . . G . . . . . T . . T . T CATC . . . . . . . T . . GT TGC . A . . . A T . . . . T . . . . G . . . . T A ATGAAAAAAAAATTAGCACAAA . . GG . . . . . C . T . . . . . . . . A . . . . .
blockSeqs : . . . . . ACCCAG . . C . . A A . . A . T . . . . . . . . A TT . . . . . . . . . . G . . ATC . . . . . . . . . . G TAC . A . . . . . . . . . . . . . . . . . . . ATGCACAAA . . G . . . . . G . . . . . . .
blockSeqs : . G T . . . . . . . . . . . TGC . . . . . . . . . . T TG . . .
blockSeqs : C T . . . . .
blockSeqCons : ** ACACAG********************** ** A* ** ATCAA G* TGACA AAC TT* TGT****** A*** CTCC*** GT GTGC****** TG******* GG**** C********
originalCons : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTGC-TTGAA-CGTTG---A---------C-NCAG---------TGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGAACACTATTTG-TTGAC-G-NGG--TTT-TC--AAG-GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTTTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT----GGGTT-TTTTTC---TTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTT---TGC----TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
finalCons : CACTTTCGTGTCA-CTTGAAGTTAAAGG-GTAATTG--TTGAA-CGTTGACACAG----------------------TGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAGA-CACTATTTG-TTGAC-G-NGG--TTTATCAAAAGG-CTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAGTT-TAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATGT------TGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTA---GGGTT-TTTTTCCTCC---A--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTGTGC------TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TATG-------TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTTGG----CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTTC--------CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 1 444444444444444444444444444 1 1 1 1 22 1 555555 222 11 1 22222222 22222 111 1 222222 1111111 1 1111 33333333333 1 2222222222 111 222222222 111 1 111111 777777777777777777777777777777777777777777777777777777777777777777777777777 222222 222 111111 11111 11 444444444 11 111
lowQualScore : 0 6 888888 6 22 3 444444444444444444444444444 5 99 1 1 3 1 6 8 1 5 00 0 6 99999 1 444444 6 111 9 0 1 66 66 0 5 5 66 5 77777777 5 8 00000 0 111 6 7 1 999999 5 2222222 77 5 5 5 77 1 5 5 2222 5 1 66666666666 1 0 1 5 6 6 3 1 6 9999999999 6 6 999 99 0 1 8 6 777777777 111 5 6 999999 1 99 222222222222222222222222222222222222222222222222222222222222222222222222222 99 99 111111 555 99 99 6 999999 77777 6 1 7 00 3 6 6 333333333 8 8 1 6 0 0 11 8 444 8
lowQualScore : . . ...... . .. . ........................... . .. . . . . . . . . .. . . ..... . ...... . ... . . . .. .. . . . .. . ........ . . ..... . ... . . . ...... . ....... .. . . . .. . . . .... . . ........... . . . . . . . . . .......... . . ... .. . . . . ......... ... . . ...... . .. ........................................................................... .. .. ...... ... .. .. . ...... ..... . . . .. . . . ......... . . . . . . .. . ... .
lowQualScore : 6 7 777777 7 55 3 888888888888888888888888888 7 22 0 7 3 4 0 0 0 8 88 0 7 22222 7 222222 7 000 3 7 4 22 55 0 0 0 99 0 11111111 0 0 00000 8 777 7 1 4 333333 7 1111111 99 7 7 7 99 4 7 0 1111 7 4 33333333333 4 7 4 7 7 7 5 0 7 2222222222 7 7 333 22 8 0 0 7 333333333 777 5 7 222222 0 22 333333333333333333333333333333333333333333333333333333333333333333333333333 22 22 888888 000 22 22 7 222222 88888 7 7 3 33 2 7 7 666666666 0 0 0 4 8 8 00 0 000 0
consensus : CACTTTCGTGTCA-CTTGAAG-TTAAAGG-GTAATTGC-TTG-AACGTTG---A---------C-NCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAG-ACACTATTTGTTTGA-CGAGGTTTATCAAAAGGCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAG-TTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTA-TG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT--A--GGG-TTTTTTTC---CTTCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTG-T--GC---TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
Reference ( family-5067 ) : CACTTTCGTGTCA-CTTGAAG-TTAAAGG-GTAATTG--TTG-AACGTTG---A---------C-ACA---------GTGAAGAGAACAGATGATGGA-TTA--ATTNTTTGAAAAATAGAAG-ACACTATTTG-TTGA-CGNGGTTTATCAAAAGGCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAGGTTGACAAAGGGATC---GC-TAGGGCAAGGAATGACGAGCGAACGCATGGACGGGTTGTTAGGGTAAG-TTTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTA-TG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTT--A--GGG-TTTTTTTC---CTCCA--AGAATT-TAGAA-A-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTG-T--GC---TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTTTACACATATGTCACTA-TC----------AGCATCT-CAAT-TTAT--GTTTT--TAAATTATAT-ATG-TA-T-G-----TATA---TCTACCCTGAATATATATCCT-TAA------TCCCCAC-ATTA-T---AT---TGATTTCCTT-TAA-----------------TT--TG-----TCG-----CAAA----------AGT--AT--TCTT-G-G--CGCCATTT---GAATC--TGGTGAT--GC-GGT------TCTC-G---TCTGTGTTATTGGATATTTAATA-C-AAAAAGCTTT-------C-CTAT-ATATTCATTA-CATNTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|1 : ACTTTCGTGTCAATTTGAAG-TTAAAGT-GTAAATGTATTGAAACGTTG---AGTGGCGATGC-CCAAAAGGAGACATGAAGAGACCAGATGATGGATTTAATATCATTTG-AGAATGAAGG-ACAC
gi|10 : aaatgcttataacaattatagtacagtattctagagaggataattttgttttatttctattgatgagtataattcaaaatttaattattagttcacaaagctaaagattgggatggcaaatcacagaaactgaggtaagaaatatctcgaactcggacattggtgttttacatgcggtgagttacgtgatttaatagcctctatgcgagtgaaggatagttgtgctggatttcattattaacaggtatgaccaaaaaaaactgttttaagttcttttgttgcacttcgcatagtatttatagtaatcattttaaaggcaatctttgtaacagtcataacatgaataacgagaccctaccaaacaaaaatctgtctttaatagaaacattagtttatttacatgtgtgggtggtcgtattaacgtctactggtagatttagtagtgattttgcagtgtgatcttctcggtcgtttgagaagtgacatccatattgatatggtttatgttagtaatggcaacgacaGAACGGGTGACGAGC-AAGGT--AATAGGGGATC------TAGGGCAATGAATGACGAGCG---GCATGG-------GTTAAG-------TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTACTG-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTTTTAA--GGGATTGTTTTT---CTTCA--AGAATT-TAGAA-A-GG--GGCATT-GTGTAA-----GTG-AAGGGTCATTAGTT------G----TATG-TTTGTAAAA---------CATTG-GC-TCTTTATGC-TTTTTACACATATATCACTA-TC----------ACCATCT-CAAT-TTAT--GTTTT--gtcgtggaattttgaagcgctaagggaaca
gi|11 : -TA-T-G-----TATA---TCTACCCTGAA-ATATATGCT-TAA------TCCCCAC-ATTA-TG--AT---TTTCTTCCTTGTAAAATTTTT----------TT--TA-----CCA-----CAAA----------CGT--AT--TCTT-G----CGCCATTT---GAATC--TGGTGAG--GC-GGT------TCTC-A---TCTGTGCTATTGGATATTTAATA-C-AAAAAGCTTTTCTATAAT-CTAT-ATATTCATTA-CATGTTATCAAGGAAAATAC--A-TA---GCATA-TGTAAATa
gi|12 : aCT---T-AGGTTATT-ATGTGATTTT--A--GGG-TTTTTTTC---AT-CA--AGAATT-TAGAA-AGGG--G-CATT-GTGTAAC----GTG-AAGGGTGATTAGTTTG-T--ACATGTATG-TTTGTAAAATGCAGCAAACATTG-G
gi|18 : GGTTGTTAGGGTAAG-TT-AAAGAAT-TTGAGAAGAATATT-T-CCT--TTTAG-A
gi|2 : cggcatCACTT-CGTGTCA-CTTGAAG-TTAAACG-GTAATTG--TTG-AACGTTGGTAA---------C-AC----------GTGAAGAGAACAGATGATGGA-TTA--ATTC-TTGAGAATAAGAAG-ACACTTTTTG-TTGACCGAGGTTT-TCAA---GCTAAGTGAGCGCCAGGAACGGGTGACGAGCCAAG--TAAC-AAGGGAT----GC-TAGGGCAAGGAAT-----GCGAAC----GGAATGGTTGTTAGGGTAAG--TTAAAGAAT-TTGAGAAGAATATTAT-CCT--TTTAG-ATATGTA-
gi|3 : aataaatttgtcagatacagccgtcatgtgtatggacacatgcgtcaaaaattatattacattttcagagagtaatttttattgataatatcaattcaaatttatatttttaaaccctgagattggggtgatgcaaactgggtagagcggcggaatgttgtttaccgcggtttttatttatagctttggcgtgagagtaatatagtgctggattttaatatagtgaaagaaagatgtgtttaacttttcactttaaattttttagtagcatttctaagtttaacaagcaaagcaaatagaatttttcataagctgcaaagaaatgttgttcgtaacgtaattacgtcgactgtagatagtagtgagcaggtgattcggtcgttgagcgccatactgaatgctatgttgaaccacgaaCACTTTCGTGTCA-CT--------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGA-CGTGGTTTATCAAAAGGCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATA-TT-----TTGTCA-TATT-----TACT---T-AGGTTATT-ATGTGATTT-------AG-TTTTTTTC---TTCCA--AGAATT-TAAAA-A-GG--G-CATT-GTG-AAC----GTGTAAGGGTCATT-GTCTT-T--GC---TATG-TTTGTAAAATGCAGCAAACATT--GC-TTTTTATGC-TTTTTACACATATGCCGCTATTC----------AGCAACT-CAAT-TTA---GTTTT--TAAATTAAAT-ATA-TA---G-----TATA---TCCACCCTGAATGT-TATCCT-TAA------TCCCCAC-ATTATT---AT---TGATTTCCTTCTAA-----------------TTCCTG-----TTG-----AAAA----------ATT--AT--TCTT-ATG--CGCCATTTC--CAATCTTTGGTGAT--GCAGGT------TCTC-ATATTCTGTGTTATTGGATATTTAATA-CAAAAAAGCTTT-------C-TTATAATATTCATTA-CATTTTATCAAGGAAAATAC--A-TA---GCATATTGTAAATAc
gi|4 : CACTTTCGTGTCA-CT--------AAAGG-GTAATTGC-TTG-AACGTTG---A---------C-ACA---------GTAAAGAGAACAGATGATGGA-TTG--ATTATTTGAAAAATAGAAGAACACTATTTGTTTGA-CGTGGTTTATCAAAAGGCTAAGTGAGTG-CAGCAACGGGTGACAAGCCAAGGTTGACAAAGGGATCCGAGCTTAGAGCAAGGAATGACGA-CGAACGCATGGACGGGCTGGTAGGGTAAGTTTTCAGGAATCTTGAGAATATAATT-T-GCT--TTTAG-ATCTATA-T
gi|5 : ataatacaattcaaattaatcattttaacaactgaattgggttagtgaatgcaaattggggtagaaacagccgaggatatgttgttttaacccgcggtttcttttatacctttcgagtgaagaatatagtgctagagatttataaattacagaaagataaattgtttactttttgtcacttccaaatattctagtaacattttaagtttagaaaaggcaaagcataaaaatttttcacaaattcaaagaaaatgtattagtcctgcagggaacgtattacgtcacagtagattgtaatacgcatgattcggtcgttgagcgtcatagggattgacatgctgCACTT-CTTGTCA-CTTGAAG-TTAAAGGTGTAATTA--TTG-AACGCTG---A---------C-CCA---------GTGAAGAGAACAGATGATGGA-TTA--ATTCTTTGAGAA-TAGAAG-ACACTTGTTG-TTGA-CGAGGGTTTT------------TGACTGCCAGGAACAGGTGACGTG-CAAGGT------AGGG--C---------GGCAAGTAATGACGAGCG---GCATGGAC-GGTTGTTGGGACAAG--TTAAAGAAT-TTGAGAAGAATATT-T-GCT--TTTAG-ATCTGTATTG-----TTGTCA-TATT-----TACT---T-ACG---TT-ATGTGATTTT--AGGGGG-TTTGTT------TTCA--AGAATT-TAGAA-A-GG--GACATT-GTGTAAC----GTG-AAGGGTTATTAGTTTG---------TATG-TTTGTAAAATGCAGCAAACATTG-GC-TCTTTATGC-TTTATACACATATATCACTA-TC----------AGCATCT-CAA--TTATCAGTTTT--TA------------------------TATG---TCTACCCTG-ATATACATACT-TAA------TAAACAA-ATTA-T---G-----------------------------------------------CA-----CAAA----------AGT--AT--CCTT---G--CGCCATTT---GAATC--TGGCGAT--GC-GGT------TCTC-G---TCTGTGTTA--------TTAATA-C-AAAAAGCTTT-----------------TTCATTA-CATCTTATTAAGGAAAATAC--A-TA---GCATA-TGTAAATA
gi|6 : tattgaattatatgcagctatgtcgaaaaggcgaTGATGGA-TTA--ATTCTTTGAAAA-TAGACG-ACATTATGTG-TTGA-CGAGGTTT-TCAA--GGCTAAGTGAGCGCCAGGAACGGGTGACGAGC--ACGATGACAA-GTGATC------TAGGGCAAGGAATGACGAGCG---GCATGGACAG-TTGTTGGTGTAAG-TT-AAAGGAT-TTGAGAAGAATACT-T-GCT--TTTAG-ATATGTA-GG-----TT--------T-----T--T---T-GGG----------GATTTT--A-------TTTTTTT---CTGCA--AGAATT-TAGAACG-GG--G-CATT-GTGTAAC----GTG-AAGGGTCATTAGTTTG-TATGT---TCAG-TTTGTAAAATGCAGCAAACATTG-GC-TCTATATGC-TTTTTACACTTATGCCACTA-TC----------AGCATCT-CAAT-TTTA--GCTTT--TAAATTATAT-ATG-TATT-G-----TATA---TCTACCCTGAA-ATATATCCT-TAA------TCCCCAA-ATGA-TGAAAA---AAA---------AA-----------------TT--AG------CA-----CAAA----------AGT--AT--TCTT-G-G--C-CCATTT---G-ATC--TGGTGATTCGC-GGT------TCTCTG---T-TGT-TTA-TGG--ATTTAATA-C----AAGCTTT-------TGCTAT-ATATTCATTAGCATGATATTAA-GAAAATACAGA-TAGGGGCATA-T-TAAATta
gi|7 : -CTTGAAGTTTAAAGG------TG--TTGAAACGTTG---A---------CTCCA---------GTAAAGAGAGAATGTAATGAA-ttt
gi|8 : aaaaatttcagacatcccgtctgtgttaattgacacaatgcacatccacaaatattaattcaatgctttctatttacaaatacagagaggtaagatttttattaataatacaattcaaatttatcatttttagacaactgaattggggtgaatgcaacatctgggtataaacaagccgaaatgttgtttaccgcggttttttttataagaatttcggagtgaagaatatagtgtggagtttatatattacagaaaagatccaatgttttactattttgtcacttccaaaatttaattctagtaacatctttaaagttggaaaaggcaaagcccataattatattttttcaacgaattcagagaaatgtatacttgactattcacgtcacagtagattgtaaatgacgcaagtgattcggtcgttggcgtcatatgggattgggGGCTAAG-TCGTAAGA-T-TTGAGAAAAATATT-TTGCTATTTTAGCATCTGTGGTGGCGATTTTTTACTATTACGCTTACTAATTGAAGCTATTTCTGTCATTCT-------G-TGTTCTTCGAACTCGACTAGAATT-TAGAA-A-AGAGG-CATTTGCG-AACACCTGTT-AAAGGGCATTCGTT-G-T--AC---CGTGGTTTGTAAAATGCAGCACACATTGTGC-TTTTTATGC-TTTGAACACATAGGTCATTA-TCCTGATAGTCTAATATCT-TAAT-TTTTA-GTTTTTATAAATCATAT-ATG-TA-TCGCTTGCTATA----CCGCTATGAA-GTATAGCTTGTAAATTCTTTCTCCACTATT--T---ATGCCTGATTTTTCT-TAACCTTGTTGAATTTATTTTT--TGATACCTCGACCAGCAAA----------CGT--ATCATGTG-G-G--TGCC--TTGGAGAATC--TGGTGAT--GG-CGTAATATCTCTT-C---TCTGTGTTATTGAA-ATTTAATAGC-AAA
gi|9 : GTTATTGATGGTATTTTTAA--GGG-TTTTTTTT---CATCA--AGAATTATAGAA-A-GG--G-CATT-GTGTAAC----GTG-AA-GGTGATTATCTTGCT--ACT--TATGTTTTGT--AAT-CAGC-AACATTG-GCTTCTTTGTGCTTTTTTACAC-TATGTCA-TA-TC----------AGCATCTCCAATATTAT--GTTTT--CAAATTATATCATGTTA-T-G-----TATAGTTTCTA--CTAATTATATTTCCT-T--------------------------------ATCTCCTT-C-------------------TC--TG-----TCA-----AAAACAATTACCACAGTAAAT--TCTTCG-GGTTGCAATTTG--GAATC--TGGTGAT--GC-GGT------TCTC-G---T-TGTG--ATTGGATA-TTAATA-C-AAAAAGCTTT-------T-CTAT-ATATTCATTC-AACATTGT--AGG--AAT-C--ATTT---GCATA-TGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTCACTTTGAAATTTATTCTAGTAACATTCTAAGTTTAACAAAGCAAAGCATAATAGAATTTTTCATAAACTCAAAGAAATGTATAGTTGCAGTAACGTAT
Unaligned ( gi|14 ): AATGCAAACTGGGTAGAACAGCCGGACTGTTGTTTACCGCGGTTTCTTTTTAGAGCTTTCGAGTGAAAAATATAGCGCTGAGTTTTTATATTACAGAAAA
Unaligned ( gi|15 ): ATTATTAACAACTAAATTGGGATGAATCCAAACTGGGTAGAATAACCGGAATGGTGTTTACCGTGGTTTCTTTTAATAGCTT
Unaligned ( gi|16 ): TGCATATGTAAATATACATTGATGTTAGCATTTACAACGTTATTGTTGAGGTTGAGGGTCGCTAAATCAGATGATAC
Unaligned ( gi|17 ): TGGGGTGAATGCAAACTGGGTAGAACACCCGAAATGTTGTTTACCGCGGTTTCTTTTTATAACTTTCGAGTGAA
Unaligned ( gi|19 ): TTATTTCAGTGATAAATGTATTATTGTTTCGTATAAAAA
Unaligned ( gi|20 ): GTATGATGACCAGTTTATATCATTGCTTTTAGT