lowQualScore : 1111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 444 1 444 1111111111 1 44 2 222 222 111 11 22222 33333333333 1 22 1 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333 22222 11 1 444444444 11111 22222 333 1 111 1 1 222 1 1 222 1 1 5555555 222 111 33333333 22 1 1 222 2222 11 222 1 2222 222 11 33 1 4444444 33333333 1 3333333333333333 22 2222 2 6666666 11 1 1 1 1 1 111 111111 22 11 111 1111 222222222222 222222222222222222 222222222 1111 111 1 555555555555 11 11 1 4444444444444444444444444444 11111 111111 111 44444444444444 1111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 1111 222 4444 222222 1111 33333333333333333 111 44444444444444 111 11 1 111 222222 1 222222222222222222 1111 1111 1 55555555555 66666666666666666
lowQualScore : 6 7 6 666 5 6 6 888 6 6 9999999999 6 5 22 0 3 99 6 8 8 000 88 444 8 8 8 8 666 8 11 00000 77777777777 0 33 0 777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 888888 33333 88 3 333333333 77777 7 4 44444 555 0 777 0 3 3 333 3 3 777 3 3 3333333 8 333 111 33333333 22 3 3 333 9999 3 88 333 3 1111 333 88 11 3 7 8 6 1111111 11111111 3 6666666666666666 6 77 1111 2 0 5555555 2 88 3 3 3 0 2 444 888888 0 5 22 99 4 66 7 3 1 4 555 4 3 7777 333333333333 4 88 44 4 0 3 777 66 222222222222222222 0 888 555555555 0 5 0000 5 6 1 3 0 4 111 0 8 33 0 222222222222 0 33 3 77 33 8 2 0 0 66 8 6 8 2 0000000000000000000000000000 5 66666 6 99 99 6 777777 6 777 999 33333333333333 7777 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 999 99 1 5 5 55 0 888888 5 5 66 0 666 2222 777 4 999 2222 222222 4444 11111111111111111 6 111 77777777777777 99 444 33 2 7 7 3 8 8 6 666 6 6 6 222222 99 5 1 5 5 1 5 555555555555555555 2222 6666 1 44444444444 6 99 99 33333333333333333
lowQualScore : . . . ... . . . ... . . .......... . . .. . . .. . . . ... .. ... . . . . ... . .. ..... ........... . .. . ... ............................................................................................................. ...... ..... .. . ......... ..... . . ..... ... . ... . . . ... . . ... . . ....... . ... ... ........ .. . . ... .... . .. ... . .... ... .. .. . . . . ....... ........ . ................ . .. .... . . ....... . .. . . . . . ... ...... . . .. .. . .. . . . . ... . . .... ............ . .. .. . . . ... .. .................. . ... ......... . . .... . . . . . . ... . . .. . ............ . .. . .. .. . . . . .. . . . . ............................ . ..... . .. .. . ...... . ... ... .............. .... . ................................................................................................................................................ ... .. . . . .. . ...... . . .. . ... .... ... . ... .... ...... .... ................. . ... .............. .. ... .. . . . . . . . ... . . . ...... .. . . . . . . .................. .... .... . ........... . .. .. .................
lowQualScore : 0 0 0 000 0 0 0 000 0 0 0000000000 0 0 55 0 2 55 0 0 0 000 88 000 0 0 0 0 000 0 00 00000 55555555555 0 88 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333 77777 33 3 777777777 33333 3 0 44444 000 0 555 0 2 3 333 3 3 333 3 3 0000000 3 333 000 77777777 77 3 3 333 0000 0 33 333 3 7777 333 33 77 3 3 3 7 7777777 00000000 3 0000000000000000 7 55 0000 5 0 0000000 5 33 3 3 3 0 8 000 000000 6 2 99 99 4 11 2 1 0 4 777 4 7 2222 666666666666 4 99 88 9 3 7 888 11 999999999999999999 4 888 111111111 7 7 9999 7 7 0 2 3 2 777 8 0 55 0 888888888888 2 88 0 22 88 8 5 0 2 88 0 4 0 8 2222222222222222222222222222 2 77777 7 22 88 7 555555 7 333 222 55555555555555 9999 7 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 666 88 4 0 0 00 4 999999 0 0 99 9 000 1111 111 3 444 3333 333333 2222 33333333333333333 7 777 55555555555555 22 000 88 5 7 3 3 0 0 7 555 7 7 7 888888 77 7 9 6 7 9 4 111111111111111111 1111 1111 4 11111111111 7 33 22 11111111111111111
consensus : AGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGC-CTTTTG-ATGT-TACGATTT-C-TGCGCCAG-G-CTTG-AATCCG--AAT-----GTCCT-------C---CGT-GCGG-ACACGGT-GTGTCCA---CGGAG-TG-----------GCACGGTG-------------TGCCCACGGA---------------------GTGA-------------C-----------------------G-CAGTG------TGT--AC-GCACGG--TG-ACAGACGG------ATAAAATTTN-TT-ATTTAAAANAT-CA--CAAATGTCC-TATA---ATTCACC-TGCGATTTT-TTA---GATTTTGGGAAAG-GT-TATTT--GGTTAG-GGA-TAT-TC----CATTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTTTTTTT-CTT-TTG-GTTG---GAGAGGNANATT--GTGG---TGT-AAA-G--TATACT---GGTGAG--GGTC-GTT-ACCAGATATTTTCTTCCGTTGT----TA-GGGGTGGA----ATT-AAATTAT-AAAGTCTGT---AAAACCTA-TATCCTCGCGCCAATTTCTTCCGCCGTNTAACAGTGTCACATATTGATCCANCTTTTTTTTTCTACTCC--AATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAANAAG-ACGGCAAGTT--T--GGTATTTGCAA-ATACCATT-AA-TTTGCCG--AATATAATACGCACTTTTT-TT-CCAAG-ANTT---TTTT----G---GCA-TGA-GAA-AGGG-GTGCGTATTAT---ATA--CCACAA---TAG---G--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAA-TC-GGCGGTTAAAT---AATG-TTTCACT-CGGAGAA--TT-ATCGG-AGGCTC--TANATCTCAC--GTTGTTCA-CCTGAATAAAAGTG-AAAAGTCT-ATCTCAAGAAA---CG----AAG-AATT-GT-AGGA---AATGTGA-----TACT-TACA--ATATGTAAAT-AAAA---AANTTAT-TATG--AAACAG-CAA--TTCTTTT-----AAATAT----GGAT-AT-----G-AAT----ACGC--ATC----ACC--------A-CGC-A--NACTG-C-------------AT--GCGT-AC-TTAA------AAAGC-----------------------C-TTTTC-AC-GCGC-TAAA-A---A-CAAAGGCTACGGGTTAG-AA-A-TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAAGG---TTNAG-A-GAATCATNTTTTAAGGAAA----A-GTTAAT----GT----NAAA--T--CTG-ATACAAC-TTTTCTT---GGGCA-----------GCC--GGCG---ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGA-TTT-GTT-AAATAGCCC-CTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGAAAAN---AA-C--CA-TG-----TA-A--GAA-TGTCAGA--GACCT----CG-TACAT--A-GGTGC
Reference ( gi|2 ) : AAAATTGACTTACCAAATCCACCATAAAATACAGTACAGGTCACGA---TTTT---ACCGCAAAATCCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGTGTGGGCCTAGAAA-A-AAG--TCGG-TGC-C-TTTG-ATGT-TACGATTT-C-TGCGCCAG-G-CTTG-AATCCA--AAT-----GTCCT-------C---CGT-GCG--ACACGGT-GTGTCCA---CGGAG-TG-----------GCACGGTG-------------TGTCCACGGA---------------------GTGA-------------C-----------------------G-CAGTG------TGT--AT-GCACGG--TG-ACAGATGA------ATAAAATTTC-TT-ATTTAAAATAT-CA--CAAAT---C-TATA---ATTCACC-TGCGATTTT-TTA---GATTTTGGGAAAG-GT-TATTT--AGTTAG-GGA-TAT-TA----CATTTGAATTCCCCCACA---GGGAGAGGGGGCGCCA---A-TGATTTTTTTTTTTCTT-TTG-GTTG---GAG-GGAATATT--GTGG---TGT-AAA-G--TATACT---GGTGAG--GGT--GTT-ACCAGATATTTTCATCCGTTGT----TAGGGGGTGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGC--ATTTT-TC-GCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACTCC--AATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ATGGCAAGTT--T--GGTATTTGTAA-TTACCATT-AA-TTTGCCG--ATTATAATACACACTTTTT-TT-CCAAG-AGTT---GTTT----G---GTA-TAA-GAA-GGGA-GTACATATTAT---ATA--CCACAA---CAG---G--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAA-TC-GGCGATTAAAT---AATG-TTTCACT-CGGAGAA--TT-ATCGG-AGGCTC--TAAATCTTAC--GTTGTTCA-CCTGAATAAAAGTG-AAAAGTCT-ACCTCAAGAAA---CA----AAG-AATT-GT-AGGT---AATGTGA-----TACT-TACA--ATATGTAAAT-AAAA---AACTTAT-TATA--AAACAG-CAA--TTTTTTT-----AAATAT----GGAT-AT-----G-AAT----ACGC--ATC----ACC--------A-TGC-A--AACTG-C-------------AT--GTGT-ATTTTAA------AAAGC-----------------------C-TTTTC-AC-GTGCCTAAA-A---ACCAAAGGCTACGGGTTAG-AA-ATTAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAAGG---TTAAG-A-GAATCATATTTTAAGGAAA----A-GTTAAT----GT----CAAA--T--CTG-ATACAAC-TTTTCTT---GGGCA-----------G-C--GGTG---ACCAGC--ACGTTTTTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGA-TT--GTT-AAATAGCCC-CTCAGTGTAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGAAAAT---AA-C--CA-TG-----C--A--GAA-TGTTTGA--GACCT----CAGTACAT--A-GGTGC
gi|13 : AGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA--CACGAGACC-CTGTGGACCAAAA-CCCACACTTTAGCATGGGCCTAGCAA-A-ATG--ACGG-----A-TTTG-AAGT-TGCGATTT-C-TTTGCCAC-C-CTTGGAATTCG--AGA-----GCCCT-------C---CAT-GTA--ACACGGT-GTGTCTA---TGGA
gi|1 : acttctgtaataCCACATGGTCACCGATGAACAAAAG-CCACGCTTTAGCGTGGGCCTAGAAA-ACAAG---CGGCTGCTC-TTTGCATGT-TACGATTTTC-TGCGCCAG-G-CTTG-AATTCACAAATTTTTTGTCCCTTTTTTCC---CGTTGCGGAACACGGTCGTGTCCA---CGGAGGTG-----------GCACGGTG-------------TACCCACGGA---------------------GTGA-------------CACCAGTGTGTCTCCGGAGGTGACG-CAGTG------TGT--AC-GCACGG--TGCACAGACCG------ATAAAATTTCCTT-ATTTAAAAAATTCAACCAAAT---C-TATA---ATTCACC-TGCGATCTT-TTATCAGATTTTGGGAAAGCGT-TATTT--GGTTAG-GGACTATCTC----CATTTTGATTCCCCCACAAGCGGGGGGGGGGGGG--A---A-TGAATTTTTTTT--CTT-TTG-GTTGTCCGAG-G-AATATT--GTGG---TGTTAAA-G--TATACG---GATGAG--GGTCTGTTTACCAGAT-----TAT---TTGT----T------TGGA----AT--AAATCTT-AAAGTTTGT---AAAACCTACTATCCTCGCGCCAATTTC-TCCGCCGTCTAACAGTGTCACATATTGATCCAACTTTTTTTTTCTACTCCCCAATGGCTGCTACTTCTCCGATGTGGGAGTATCAATAT-GAACAAAGCACGGCAAGTT--TTGGATATTTGCAAACTACCATTTAACTTTGCAG--ATTATAATACACACTTTTT-TTTCCAAG-AGGTATGGTTT----G----TA-TAA-GAA-AGGAAGTACATAT-ATTTAATA--C-ACAAACACGG---T--T-----TATGCACGCG--AC-GT--ATTTCCA-G-TG-AAAAATC-GGCGATTAA-T---AA-G-TT--ACT-CGGAGAAAATTGATCGGGAGGCTC--TAAATCTTAC--GTTGTTCAGCCTGAATAAAAGTGGAAAAGTCT-ATCTTAAGAAA---CG----AAG-AATT-TTTAGGA---AATGTGA-----TACT-TACA--ATATGTAAATTGCAA---AACTTATGCATA--AAACAG-CAT--TTCTTTTTTTTAAAATAT----GGATCATT----G-AAT----ACGC--ATC----ACC--------ACCGC----AACTG-C-------------AT--GTGTAACGTTAA------ATTGC-----------------------CTTTTTC-AC-GCG-CTAAA-A-----CAAAGCCTACGGGTTAGAAA-ATTAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTAGC-T----GTAAGG---TTTAG-A-GAATC-TATCTTAAGGAAA----A-GTTAAT----GT----AATACCT--CTG-ATACAAC-TTTTCTT---GGGCA-----------G-C--CGCGTGAAAAAGC--ACGTTTATTTTTCTAAA-CGAATCCA
gi|4 : aaCACG-GATCACCGTGGACCAAAAGTCCACGCTTCAGCGTGGGCCTAGAAATA-AAGGTCCGG-TGC-CTTTTG-ATGTCTACGATTT-CTTGCGCCAGCGCCTTG-AATCTC--AAT-----GTCCT-------TCCACGT-GCGA-ACAAGTT-GTGTCCAGGGCGTAG-TGATCAAGTTTGCGCACGGTAGTGCACTGGTGGCTGCCCACGGATGACACAGTGTGTCCCACGGAGTGA-------------C-----------------------GCCAGTG------TGT--ATCGCACGGGCTG-ACAGACGGCAAGATATAAAAATTA-TTAATTAAAAATAT-CA--CAAAT---CATATAAACATTCACCTTGCG-TTTT-TTA---GATTTTGGAAGAG-GTGTATTTTGCGTTAGCGGA-CATGTATTTCCATTTGATTTTCCCCACA---AGGGGTGAGGGCGCCG---ACTGATTTTTCTTTTTCTTCTTGAGTTG---GAGAGGTAGATTCATTGGATATGT-AAA-GCTCATACTAGAGGTGAGCCAGTC-GTT-ACCAGATATTTTCTTCCGTTGT----TA-GGGGTGGATGATATTCAAATTATAAAAGTCTGTGTAAAAACCTA-TAT-CTCGCGgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagccccgctgaacccttgaatttgtcctggattgttaaaatagcccctcagtgtaaattactttttaatatacatgtacatgttttgagaggaaaataacgcatgccacgaaatgtttgaagaaccttctatgctacatacggtgcctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|22 : G-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGC-CTTTTG-ATGT-TACGATTT-C-TGCG-CAG-G-CTTG-AATCCA--AAT-----GTCCT-------gcaacagtttttacgtctctga
gi|14 : GCTTTAGCGTGGGACTAGAAA-A-AAG--TCGG-TGC-A-TTTA-ATGT-TAAGATTT-C-TGCGCCAG-T-CTTC-AATCCA--ATT-----GTCCT-------C---CGT-GCG--AANNNNN-NNNNNNN---NNNNN-NN-----------NNNNNNNN-------------NNNNNNNNNN---------------------NNNNNNNNNNNNNNCCTC-----------------------G-GAGTGACGCAGTGTGTAC-GCACGG--TG-ACAGACGA------ATAAATTTTT-TC-A-TTAAAataattcacctgcga
gi|22 : AT-C---CAAATGTCC-TATA---ATTCACC-TGCGA
gi|18 : ggatcaccgtggaccaaaagtccacgctttagcgtgggcctagaaaaaagtcggtgccttttgatgttacgatttctgcgcaggcttga--CAAATGTCC-TATA---ATTCACC-TGCGATTTTTTTA---GATTTTGGGAAAG-GT-TATTT--GGTTAG-GGA-TAT-TC----CATTGGATTTCCCCCACA---GGGGAGGGGGGCGCCGAATA-TGATTTTTTTTTT--CT-TTG-GTTG---G
gi|3 : tc--GTGG---TGT-AAAAG--TATACT---GGTGAG--GGT--GTT-ACCAGATATTTTCTTCCGTTGTCATGTAGGGGGTGGA----ATT-AAATTAT-AAAGT-----------------ATCCTCGCGC--ATTTTTTC-GCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACTCC--AATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAA-AAG-ACGGCAAGTT--T--GGTATTTTCAA-ATACCATT-AA--TTGCCG--ATTATAATAC-CAC-TTTT-TT-CCAAG-AGTT---GTTT----G---GTA-TAA-GAA-GGGA-GTACATATTAT---AT---CCACAA---CAG---G--T-----ATTG---ACC--A--GT--TTTTCCA-A-TG-AAAA-TCGGGCGATTAAAT---AATGTTTTCACT-CGGAGAA--TT-GTCGG-AGGCTC--TTAATC-TAC--GTT-TTCA-CCTGAATAAAAGTG-AAAAGTCTGATCTTAAGAAA---CG----AAG-AATT-GT-AGGA---AATGTGA-----TACT-TACA--ATA--------AAAA---AACTTAT-TATG--AAACAG-CAATTTTTTTTT-----AAATAT----GGAT-AT-----G-AAT----ACGC--ATC----ACC--------A-CGC-A--AACTG-C-------------AT--GTGT-ACGTTAA------AAAGC-----------------------C-TTTAC-AC-GTG-CTAAA-A-----CAAA-GCTACGGGTTAG-AA-ATTAAAATTTGCT-AC---TAGAA-AAGTT--AGTTTA-C-T----GTAAGGT--TTAAG-A-GAATC-TATGTTAAGGAAA----A-GTTAAT----GT----CAAAC-T--CTGAATACAAC-TTTTCTT---GGGCA-----------GCC--GGTG---ACCAGC--ACGTTTGTGTTTCTAAACCGAATC
gi|25 : TTTTTTTTCTACTCC--AATGGC-GCTACCT-TCCGATGTGGAGGT-TCAATAT-GAAACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctgacccttgatttgtcctggatttgttaaatagccctcagtgtaaatactttttaatatacatgtacatgatttgagaggaaaataaccatg
gi|15 : AATATTGAAATAGA-AAAATAAGTT--T-------TTGCAT-ATACCAT--AA-TTTGCCA--AATATAATGTGCACTTTCTATT-TCAAG-ATTT---TTTT----G----CA-TGA-GAA-AGGG-GTGTGTATTAT---ATA--CCACAA---T-G---G--T-----TATG---AACAAAT-TT--TTTTCCA-G--G-TAAA-TT-GGC-AGTGAAT---A
gi|3 : gagtgacatgcttgagtGGCAA-TTAAT--GGTATTTGAAA-ATACCA---AA-CTTGCCG--
gi|21 : gtggtgtaaaagtatactggtgagggtgttaccagatattttcttccgttgtcatgtagggggtggaattaaattataaagtatcctcgcgcattttttcgccgtgtaaagtgtcactccacttttttttttctactccaatggcgctactttccgatgtggaggttcaatatgaaaaagaGCAGGTT--T--TGGATCCATGA------ATT-GA-TTTACCGTAATTGTGATGCGCAAATTTT-CA-TCAAG-ATTT---TTTT----GTCTGT--TAA--AT-GGGA-GTTCGTATTAT---ATATGCCAC-A---TAG---G--T-----T-TA---ACC--AC-gattataataccacttttttccaagagttgtttggtataagaagggagtacatattatatccacaacaggtattgaccagtttttccaatgaaaatcgggcgattaaataatgttttcactcggagaattgtcggaggctcttaatctacgttttcacctgaataaaagtgaaaagtctgatcttaagaaacgaagaattgtaggaaatgtgatacttacaataaaaaaacttattatgaaacagcaatttttttttaaatatggatatgaatacgcatcaccacgcaaactgcatgtgtacgttaaaaagcctttacacgtgctaaaacaaagctacgggttagaaattaaaatttgctactagaaaagttagtttactgtaaggtttaagagaatctatgttaaggaaaagttaatgtcaaactctgaatacaacttttcttgggcagccggtgaccagcacgtttgtgtttctaaaccgaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctgacccttgatttgtcctggatttgttaaatagccctcagtgtaaatactttttaatatacatgtacatgatttgagaggaaaataaccatg
gi|5 : tcAA-ATACCGT--AA-TTTGTCG--AATATAATACAAACTTTTT-T---CAAG-ATTT---TTTTTTGAG---GCA-TGA-GAT-AGGG-GTGCATATTAT---ATA--CCACAA---TAG---G--T-----TATG---ACC--AA-TTC-TTTTCGATG-TA-AAAA-TC-GGCGG-TGAATACAAATG-TTTTACT-CGGAGA----C-AT----AGTCTT--CACATTTCAT--GTTGCTCA-CTTATTTTAAAGTG-TAAAATCT-ATGCCAAGAAAATCCA----ACGAAATTAAT-AATTACAAATATGA-----CACT-TACG--ATATGTAAAT-GAAA---AGGTCG---AT----------CAA--------------AAATAT----TCAT-AT---------------------------ACC--------G-CGCTATTAAC-G-C-------------AT--GTGT-A---CAAATGACTAAAG--------------------------TTTTC----------AAT-A---ACGAA----TCCAGATTGG-AA-A--ATAATTTGCC-CC---CAA-A-AAGTT--TGTTTA-C-T----ATAAGT---TTTA--A-GAAT-AGGTTTTATGGAAATGTTA-ATTAAT----GT-----AAA--T--TT---TTGAAT-TTTTTTTCTAAGGCA-----------GCC--GGCG---AACA
gi|6 : acacatttaaaataccgtttaA-CTACCAT--AA-TTTGCCG--AATATAATATGCACTTTTT-TT-TAAAGAAGTT----TCT----G---GTA-TGA-GAA-AGGG-GTGCATATTGT---GTA--CTACAAAT-CAATACA--T-----TATG---ACT--TT-TT--TTTTCAG-G-TGAAAAA-TC--GTGGTTAAGT---TATA-TTTCACTCCAGAGAA-----AT----AGACTTCATACATACCACAGGCTTTT---TCTCAA-------G-AAAA--TT-ACTACAAAAAA----A----TAA-AATT-GT-AGA----AATGTAA-----TCCT-TACAATATATGTAAAT-AATC---AAATTAT-CATG--AAACAACCAA-------TC-----AAAAATTGTAGGAT-CT-----G-AAT----ATTC--ATC----ACA--------A-CGT-A--TACTGCC-------------ATTAATGC-ACTTTGA------A-------------------------------------------TAAA-------CAAA-GCT--GAGTTGG-AA-A--ATAATTTACC-AC---TAA-A-AAGTA--AG---G-C-T----GTAAGG---TTTAG---GAAT-ATCTTTTAAAGAAA----
gi|11 : atcaaaattgtcttTACCGT--AT-TTTGCCG--AATATGATATGCACTTTTT-TT--CAAG-AATA---TTTT----G---GC--CAATGAA-AGGA-GTGTGGAAAAT---ACA--CCACAA---TAG---AATT-----TA-G---ACC--CCTAT--TTTTTAA-GACG-AAAA-TT-GGCAGTTTAGT---ATTG-Tttatcttgggcaaaagaaataggcagcaaccagcacgttat
gi|23 : T-AT-TTTGCCA--AAAATAATACACA-TTTTT-TT-CCAAG-AATT---GTTTGGG-G---GCAGTGA-GAAGGGGG-GTGGGTTTCAT---ATA--Cattatgagccatattctggaatttgatgctgttaaactttgatttcagattctgaataagaattagtataatattgcctaacattgattgtgggtaaatatgattacctgatgttacaagctat
gi|12 : ttgttccatatattgAATACACACCTTTT-T---CAAG-AATA---TTTT----G---ACA-TGA-GAA---------------AT---ATA--GCACAA---TAG---G--TTTAAATATG---ACT--GA-GTTCTTTTCCA-G-GT-AAAA-Tt
gi|10 : tgcagacattgaaagtttagaataccgtactttgtagaatgtactagtagtgtaAAGTG-AAAAATCA-ATCTCAAGAAA--------------ATT-A---------AA-----------AC---ACA--A-----ACAT-AAAA------TTGT-TG-A--AAAT-G-TGA--TACTTA------AAATAT----GCCT-ACAACTAG-ATT----ATGC--A------GCC--------A-T-T-A--AA--G-C-------------AC--CCAT-AT---AC------AATGC-----------------------T-TTTTCCAT-GTGC-TAAA-ACA-AACAAAG-CTA--GGTTGG-AA-AGTAA--TTTGCC-AC---TAA-A-AAGTT--AGCTGA-C-T----CAAAGGC--TTGTGCATGAAT-AT-TTTTAAGGAAA----T-GTTAAT----GTGAGACATA--T---TG-AAATAAC-TTTTCTT---GAACATAAATAATGAGA-C--AGTG---ACCAGC--ACTTTttttaaatcgacaatgaatacaattaaatcgtttttactgtctcagtcttcattattactgta
gi|9 : gGAAA---CGCATTAAA-AATT-GT-AGGA---AAT-TAAGTACTTACTGTACA--ATAT-TAAAT-AAAATAAAGATTAT-TATCTTGAACGG-CAA--TTTTTTT-----AACTTTT---GGAT-ATTG---A-AAT----ACTCTTATCTGACACCCATCAACAA-CAC-A--CACTG-C------------------CAT-TTTCTAA------AAAGCATACTGATGTAGTCTACCTGAAGC-TCTTT-AT-CCGCTTAAA-ATAAACTCAAAGCTATGT-TTAG-GA-A--AAAATTTGCCCGC---TAG-A-ACGTTTTAGCTTA-T-TTGGTGTAAGGA--TTAAG-A-ATATC---TTTTAAGGAAA----AAGTTAATTGATAT----AAAC--T--CGA-ATACAACCTTTTCTT---GGGCC-----------GCC--GGTa
gi|16 : AATAT----GAAT-AT-----GTAATCACCACAC--ATC----ACC--------A-AGC-A--TACTG-CCAAATGTATAAACAT--GTGT-AC---AA------AAAGC-----------------------C-TTTTC-ACCATATGGAAT-A---AGCAA-TGCTA--AGTTAG-AA-AA-AAAACTTGCC-ACCACTAG-A-AAGTT--AGT
gi|7 : AT----ACGC--A-C----ACA--------A--AC-A--TACTG-C-------------ATT-GTCT-AT--------------AC-----------------------C-TCTTC-AT-GTGC-TAAATA---AACAAAGCCTATGGTCTAG-AATAATAATATTTGCG------TAG-ATAAGTT--GCTTTA-TAT----GTAAAAGAATTAAG-A---AT--TCTTTTAAGGAAA------GTTAAT----GT----TAAA--CTACTG-ATGCAAT-TTATCTT---GGGC------------G-CCGGGTG---ACCGGCAAATTTTTTTGTTTTT--A-CGAATTCA
gi|1 : acttatgcacggccattttctctcatttttggaataaggtgggatactggcagattttgaaggacgCGCTGAACC-CT-TGA--ATTT-GT-CCTGGA-TT--GTTAAAATAGCCC-CTCAGTGTAAATTACTTTTTAATATACATGTACATGT-TT--TGAGAGGAAAAT---AA-CG-CA-TGCCA--C--G--AAA-TGTTTGAAGAACCTTCTATGCTACAT--ACGGTGCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta
gi|3 : aaccacatggtcaccgatgaacaaaagccacgctttagcgtgggcctagaaaacaagcggctgctctttgcatgttacgattttctgcgccaggcttgaattcacaaattttttgtcccttttttcccgttgcggaacacggtcgtgtccacggaggtggcacggtgtacccacggagtgacaccagtgtgtctccggaggtgacgcagtgtgtacgcacggtgcacagaccgataaaatttccttatttaaaaaattcaaccaaatctataattcacctgcgatcttttatcagattttgggaaagcgttatttggttagggactatctccattttgattcccccacaagcgggggggggggggaatgaattttttttcttttggttgtccgaggaatattgtggtgttaaagtatacggatgagggtctgtttaccagattatttgtttggaataaatcttaaagtttgtaaaacctactatcctcgcgccaatttctccgccgtctaacagtgtcacatattgatccaactttttttttctactccccaatggctgctacttctccgatgtgggagtatcaatatgaacaaagcacggcaagttttggatatttgcaaactaccatttaactttgcagattataatacacacttttttttccaagaggtatggtttgtataagaaaggaagtacatatatttaatacacaaacacggtttatgcacgcgacgtatttccagtgaaaaatcggcgattaataagttactcggagaaaattgatcgggaggctctaaatcttacgttgttcagcctgaataaaagtggaaaagtctatcttaagaaacgaagaatttttaggaaatgtgatacttacaatatgtaaattgcaaaacttatgcataaaacagcatttcttttttttaaaatatggatcattgaatacgcatcaccaccgcaactgcatgtgtaacgttaaattgcctttttcacgcgctaaaacaaagcctacgggttagaaaattaaaatttgccactagaaagttagtttagctgtaaggtttagagaatctatcttaaggaaaagttaatgtaatacctctgatacaacttttcttgggcagccgcgtgaaaaagcacgtttatttttctaaacgaatccagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagcccCGCTGA-CC-CT-TGA---TTT-GT-CCTGGATTT--GTT-AAATAG-CC-CTCAGTGTAAA-TACTTTTTAATATACATGTACATG-ATT--TGAGAGGAAAAT---AA-C--CA-TG-----ctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|20 : gtggtgtaaaagtatactggtgagggtgttaccagatattttcttccgttgtcatgtagggggtggaattaaattataaagtatcctcgcgcattttttcgccgtgtaaagtgtcactccacttttttttttctactccaatggcgctactttccgatgtggaggttcaatatgaaaaagacggcaagtttggtattttcaaataccattaattgccgattataataccacttttttccaagagttgtttggtataagaagggagtacatattatatccacaacaggtattgaccagtttttccaatgaaaatcgggcgattaaataatgttttcactcggagaattgtcggaggctcttaatctacgttttcacctgaataaaagtgaaaagtctgatcttaagaaacgaagaattgtaggaaatgtgatacttacaataaaaaaacttattatgaaacagcaatttttttttaaatatggatatgaatacgcatcaccacgcaaactgcatgtgtacgttaaaaagcctttacacgtgctaaaacaaagctacgggttagaaattaaaatttgctactagaaaagttagtttactgtaaggtttaagagaatctatgttaaggaaaagttaatgtcaaactctgaatacaacttttcttgggcagccggtgaccagcacgtttgtgtttctaaaccgaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTTGC-CA-CT-TGA--ATTT-GT-CCTGGA-TT---TT-G---------CTCAA-GGAAA-AACCTTTTTATTTTTAT-CATATGTA-----GAGAGAAAAAA---AA-T--CATTG-----TA-A--GAA-TGTCAGA--GACCTA---CA--AAATTGA-GGTGC
gi|19 : tgtcaCGCTTG-CCACTATGATGATCT-GT-C-TGGA-TTT-GTTAAAATA-CCT-CTAAAGGAGAA-AACTTTTTACT-TTCAT-CATATGTA-----GAGAGAGAAAA---AA-CATCATTG-----TAAA--GAACTGTCAGA--GAc
gi|17 : ttgtgtacgctgGCTGA-TC-CT--GA--ATTTTGT-CC--GA-TTTTGTT-AAATAGCCC-TCAAGTGTAAA-TACTTTTTGATAGACATGTACATGTATT--TGA---GAAAAT---AACC--CA-TG-----CAAA--GAA-TGTTTGA--GACCT----
gi|8 : T-TGA---TTT-GTACCTGGA-TTT-GTTTAAATATTCCTCTCAA-GAAAT-TACTTTTTATTTT---------TTTATTTGTGAGAGGACAATAAAAA-T--CA-TGGTATAA--A--GAA-TGTCAGA--GCCCT----gatatcgcacatcgctg
gi|24 : ctgtgtacgctagcttagccatggaCCT-CTCAGGGAAAA-TACTTTTTATTATA-----------AT----GAGAGAAAAAA---AA-T--CA-TG-----T--ATAAAA-TGTCAGA--GACC--------TACATG-A-GGTGCaacaaaatgagggtgctttcttcaatcagtaagcgactgacgtacgttatattccatttcatgaaaaggttgagaggaatgggtatgagtttgtgtttttatttttcttgttcaaagaatgttttttacggactgctggcgtctaagaataattaaacagatcaagtatccctcaatttttgacaattaaacgatggccattat
Alignments
lowQualScore : 2 2 222 222 22 1 111 111 11111 22222222222 77777777777777777777777777 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 222222 11 1 1 111 111 111 1 111 1 1 1 1 1 1 2222222 1 111 11111 1 11 1 1 1 11 111 1 1 11 111 11 22 1 1 222222 1 2222 11 1 1111111 1 11 11 11111 2 6666666 11 1 1 1 1 1111 1 222222222222 1111 11111 11111 111111111 1111 111 11111111111 11 11 111111 11111111111 11111 111 1111 22222222222222 1111 2222222 11111111 8888888888888888888888888888888888888888888888888 11111111111 2222222 222 1111 1 1111 22 222222 1111 2222222222 44444444444 1 6666666666666666666666666666666666666666666666666666666666666666 111 1 11 1111 1111 1 22222 111 44444444444444 111
lowQualScore : 4 0 3 2 4 0 111 000 3 00 6 0 3 6 6 555 6 1 7 6 6 6 6 111 6 6 6 4 66666 88888888888 8 77777777777777777777777777 444 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 0 888888 11 0 3 1 0 444 666 444 8 0 0 777 0 0 0 0 0 0 6666666 0 3 777 0 2 88888 0 33 3 0 0 3 7 1 1 33 777 0 0 33 777 33 55 0 0 3 3 888888 0 1111 33 0 8888888 0 2 88 33 33333 1 3 5555555 11 33 0 0 0 8 8 0 0 6666 5 4 5 4 4 4 000000000000 3 4 4 3 1 0 55 5555 55 4 9999 44 0 0 777 55 11111 777 66 11111 777 777777777 5 2222 5 5 6 000 6 0 8 88888888888 11 1 6 11 5 8 11 6 6 6 1 666666 44444444444 5 3 3 3 44444 5 77 55 5 000 3 5 1111 1 0 88888888888888 5555 5 5 2222222 9999 0 66 999999 66666666 66 5 777 8888888888888888888888888888888888888888888888888 2 4 99999999999 66 777 4 777 6666666 7 0 66 999 55 777 4 4 66 5 5 0000 66 0 1 5555 77 5 222222 0000 7 5555555555 5 888 22222222222 2 5 5 1 5 99 1 3 0 4444444444444444444444444444444444444444444444444444444444444444 6 6 5 222 5 5 5 888 1 33 6 1 55 0 3 55 99 0 0 3333 5 66 1 2222 5 0 88888 77 5 000 66666666666666 444
lowQualScore : . . . . . . ... ... . .. . . . . . ... . . . . . . . ... . . . . ..... ........... . .......................... ... .......................................................................................................... .. . ...... .. . . . . ... ... ... . . . ... . . . . . . ....... . . ... . . ..... . .. . . . . . . . .. ... . . .. ... .. .. . . . . ...... . .... .. . ....... . . .. .. ..... . . ....... .. .. . . . . . . . .... . . . . . . ............ . . . . . . .. .... .. . .... .. . . ... .. ..... ... .. ..... ... ......... . .... . . . ... . . . ........... .. . . .. . . .. . . . . ...... ........... . . . . ..... . .. .. . ... . . .... . . .............. .... . . ....... .... . .. ...... ........ .. . ... ................................................. . . ........... .. ... . ... ....... . . .. ... .. ... . . .. . . .... .. . . .... .. . ...... .... . .......... . ... ........... . . . . . .. . . . ................................................................ . . . ... . . . ... . .. . . .. . . .. .. . . .... . .. . .... . . ..... .. . ... .............. ...
lowQualScore : 0 0 0 5 0 0 555 555 0 00 0 8 8 7 7 222 7 0 3 7 7 7 7 777 7 7 7 8 77777 99999999999 0 66666666666666666666666666 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 0 888888 00 0 2 0 0 222 444 000 0 8 0 555 0 0 0 0 0 0 0000000 0 2 555 2 5 55555 0 22 2 0 0 3 3 0 0 88 555 0 0 88 555 88 00 0 0 2 5 222222 0 2222 22 0 2222222 0 5 00 88 55555 0 3 3333333 77 88 0 0 0 0 8 0 2 5555 0 4 5 0 0 0 555555555555 0 0 0 4 0 8 55 5555 55 0 9999 55 5 9 000 55 11111 888 11 11111 888 777777777 0 1111 7 0 0 000 7 8 0 22222222222 00 0 4 00 0 0 88 7 7 7 7 444444 33333333333 7 0 0 0 33333 7 99 77 7 000 0 7 7777 4 3 11111111111111 6666 0 0 6666666 4444 1 11 666666 11111111 33 3 888 0000000000000000000000000000000000000000000000000 3 4 66666666666 11 888 4 888 2222222 4 1 11 777 22 888 4 4 11 0 0 6666 99 0 0 9999 55 9 111111 6666 6 8888888888 0 888 00000000000 5 0 0 4 7 22 0 2 0 0000000000000000000000000000000000000000000000000000000000000000 7 7 7 999 7 7 0 666 4 66 1 0 44 5 6 00 55 2 1 2222 0 99 0 9999 0 0 66666 99 7 000 55555555555555 333
consensus : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGATTT-C-TGCGCCAG-G-CTT-GAA-TC-CAAAT-----GTCCT-------C---CGT-GCGAA------------------------CACGGTGTGTCCA---CGGAGTG-----------GCAC-GGTG-------------TGTCCACGGAG-TGA------------CGCAGT--------GTGT-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTTC-TT-ATTTAAAATAT-CA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TTA---GATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCATTT-GATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTGGA-GAGGAATATT--GTGG---TGT-AAA-G--TATACT---GGTGAG--GGTC-GTT-ACCAGAT-ATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GG-TTTAG-A-GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-GCA--A-A--GAA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
Reference ( family-5038 ) : AGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGATTT-C-TGCGCCAG-G-CTT-GAA-TC-CGAAT-----GTCCT-------C---CGT-GCGGA------------------------CACGGTGTGTCCA---CGGAGTG-----------GCAC-GGTG-------------TGCCCACGGAG-TGA------------CGCAGT--------GTGT-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTTN-TT-ATTTAAAANAT-CA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TTA---GATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCATTT-GATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTGGA-GAGGNANATT--GTGG---TGT-AAA-G--TATACT---GGTGAG--GGTC-GTT-ACCAGAT-ATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTCTGT---AAAACCTA-TATCCTCGCGCCAAT--TTCTTCCGCCGTNTAACAGTGTCACATATTGATCCANCTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAANAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCA-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TANATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GG-TTNAG-A-GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-GT---A-A--GAA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
gi|1 : AA-CCACATGGTCACCGATGAACAAAAG-CCACGCTTTAGCGTGGGCCTAGAAA-ACAAG---CGGCTGCTCTTTGCATGT-TACGATTTTC-TGCGCCAG-G-CTT-GAATTCACAAATTTTTTGTCCCTTTTTTCC---CGTTGCGGAACACGGTCGTGTCCACGGAGGTGGCACGGTGTACCCA---CGGAGTG-----------ACACCAGTG-------------TGTCTCCGGAGGTGA------------CGCAGT--------GTGT-----------ACGC-------------ACGG--TGCACAGACCG------ATAAAATTTCCTT-ATTTAAAAAATTCAACCAAAT---CTATA---ATTCACC-TGCGATCTT-TTATCAGATTTTGGGAAAGCGT-TA-TTTG-GTTAG-GGACTA-----TCTCCATTTTGATT-CCCCCACAAGCGGGGGGGGGGGGG--A---A-TGAATTTT-TTTT--CTT-TTG-GTTGTCCGAGGAATATT--GTGG---TGTTAAA-G--TATACG---GATGAG--GGTCTGTTTACCAGATTATTT---------GTT-----------TGGA----AT--AAATCTT-AAAGTTTGT---AAAACCTACTATCCTCGCGCCAAT--TTC-TCCGCCGTCTAACAGTGTCACATATTGATCCAACTTTTTTTTTCTACTCCCCAATGGCTGCTACTTCTCCGATGTGGGAGTATCAATAT-GAACAAAGCACGGCAAGTTTTGGATATTTGCAAACTACCATTTAACTTTGCAG-ATT-ATA------------ATACACACTTTTTT-TTCCAAGAGGTATGGTT----TGT--A-TAAGAA-A--GGAAGTACATA-TATTTAATA---CA-----CAAACACGGT--T-----TATGCACGCG--AC-GT--ATTTCCA-G-TGAAAAATC-GGCGATT-AAT---AA-G-TT--ACT-CGGAGAAAATTGATCGGGAGGCTC--TAAATCTTAC--GTTGTTCAGCCTGAATAAAAGTGGAAAAGT-CT-ATCTTAAGA------AACG----AAG--AATTTTTAGGAAATGTGA-----TACT-TACA--ATATGTAAATTGCAA---AACTTATGCAT---AAAACAGCAT--TTCTTTTTTTTAAAATAT----GGATCATT-----G-AAT----ACGC--ATC----ACC--------ACCGCA-ACT---GC-------------AT----------GTGTAA-CGT----TAA-------ATTGCCTTTTTC-ACGCG-CT--AA--A---A-CAA---A-----GCCTACGGGTTAGAA--AATTAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTAGC-T----GTAA--GG-TTTAG-A-GAATC-TATCTTAAGGAAA----A-GTTAAT----GTAATACCT---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-GCGTGAAAAAGC--ACGTTTATTTTTCTAAA-CGAATCCA
gi|1 : CGCTGAACC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TTAAAATA-GCCCCTCAGTGTAAATTACTTTTTAATATACATGTACATGT-TT--TGAGAGGA-A--AATAA-CG-CA-T-GC---C-ACGAAA-TGTTTGAAGA-ACC-----TTCTAT-GCTACAT-ACGGTGCgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagccccgctgaacccttgaatttgtcctggattgttaaaatagcccctcagtgtaaattactttttaatatacatgtacatgttttgagaggaaaataacgcatgccacgaaatgtttgaagaaccttctatgctacatacggtgcctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|10 : aaccacatggtcaccgatgaacaaaagccacgctttagcgtgggcctagaaaacaagcggctgctctttgcatgttacgattttctgcgccaggcttgaattcacaaattttttgtcccttttttcccgttgcggaacacggtcgtgtccacggaggtggcacggtgtacccacggagtgacaccagtgtgtctccggaggtgacgcagtgtgtacgcacggtgcacagaccgataaaatttccttatttaaaaaattcaaccaaatctataattcacctgcgatcttttatcagattttgggaaagcgttatttggttagggactatctccattttgattcccccacaagcgggggggggggggaatgaattttttttcttttggttgtccgaggaatattgtggtgttaaagtatacggatgagggtctgtttaccagattatttgtttggaataaatcttaaagtttgtaaaacctactatcctcgcgccaatttctccgccgtctaacagtgtcacatattgatccaactttttttttctactccccaatggctgctacttctccgatgtgggagtatcaatatgaacaaagcacggcaagttttggatatttgcaaactaccatttaactttgcagattataatacacacttttttttccaagaggtatggtttgtataagaaaggaagtacatatatttaatacacaaacacggtttatgcacgcgacgtatttccagtgaaaaatcggcgattaataagttactcggagaaaattgatcgggaggctctaaatcttacgttgttcagcctgaataaaagtggaaaagtctatcttaagaaacgaagaatttttaggaaatgtgatacttacaatatgtaaattgcaaaacttatgcataaaacagcatttcttttttttaaaatatggatcattgaatacgcatcaccaccgcaactgcatgtgtaacgttaaattgcctttttcacgcgctaaaacaaagcctacgggttagaaaattaaaatttgccactagaaagttagtttagctgtaaggtttagagaatctatcttaaggaaaagttaatgtaatacctctgatacaacttttcttgggcagccgcgtgaaaaagcacgtttatttttctaaacgaatccagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagcccAAGT-GAAAAAT-CA-ATCTCAAGA------AA------------A-TT-----AAA-----------AC---ACA--A-----ACA-TAAAA------TTGT-T-----GAAAATGTGA--TACTTA------AAATAT----GCCT-A-CAACTAG-ATT----ATGC--A------GCC--------A-T-TAAA-----GC-------------AC----------CCAT-A--------TAC-------AATGCT-TTTTCCATGTG-CTA-AA--ACAAA-CAA---A-----G-CTA--GGTTGGAA--AG-TAA--TTTGCC-AC---TAA-A-AAGTT--AGCTGA-C-T----CAAA--GGCTTGTGCATGAAT-AT-TTTTAAGGAAA----T-GTTAAT----GTGAGA--CATATTG-AAATAAC-TTTTCTT---GAACATAAATAATGAGAC-A-GTG-ACCAGC--ACTTTctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|11 : g-TACCG-T-AT-TTTGCCG-AAT-ATG------------ATATGCAC-TTTTT-TTC-AAGAATATT--TT----GGCCAA-TGA--A-A--GG-AGTGTGGAAAAT---ACA--CCA-----CA---ATAGAATT-----TA-G---ACC--CCTAT--TTTTTAA-GACG-AAAATT-GGCAGTTTAGT---ATTG-Ta
gi|12 : AA-TACCG-T-AC-TTTGTAG-AAT-GTACTAGTAGTGTAAATACACAC-CTTTT-T--CAAGAATATT--TT----GAC--A-TGAGAA-----------------AT---ATA--GCA-----CA---ATAGG--TTTAAATATG---ACT--GA-GTTCTTTTCCA-G-GT-AAAATattatgagccatattctggaatttgatgctgttaaactttgatttcagattctgaataagaattagtataatattgcctaacattgattgtgggtaaatatgattacctgatgttacaagctat
gi|13 : tgcagacattgaaagtttagAGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA--CACGAGACC-CTGTGGACCAAAA-CCCACACTTTAGCATGGGCCTAGCAA-A-ATG--ACGG-----ATTTG-AAGT-TGCGATTT-C-TTTGCCAC-C-CTTGGAA-TT-CGAGA-----GCCCT-------C---CAT-GT-AA------------------------CACGGTGTGTCTA---TGGAttttaaatcgacaatgaatacaattaaatcgtttttactgtctcagtcttcattattactgta
gi|14 : acttctgtaataGCTTTAGCGTGGGACTAGAAA-A-AAG--TCGG-TGCATTT-A-ATGT-TAAGATTT-C-TGCGCCAG-T-CTT-CAA-TC-CAATT-----GTCCT-------C---CGT-GCGAA------------------------NNNNNNNNNNNNN---NNNNNNN-----------NNNN-NNNN-------------NNNNNNNNNNN-NNNNNNNNNNNNCCTCGGAGTGACGCAGTGTGT-----------ACGC-------------ACGG--TG-ACAGACGA------ATAAATTTTT-TC-A-TTAAA
gi|15 : AATATTGAAATAGA-AAAATAAGTTT-------TTGCATA-TACCA-T-AA-TTTGCCA-AAT-ATA------------ATGTGCAC-TTTCTATTTCAAGATTTTT--TT----G-C--A-TGAGAA-A--GG-GGTGTGTATTAT---ATA--CCA-----CA---AT-GG--T-----TATG---AACAAAT-TT--TTTTCCA-G--G-TAAATT-GGCAG-TGAAT---A
gi|16 : gagtgacatgcttgagtAATAT----GAAT-A-T-----GTAATCACCACAC--ATC----ACC--------A-AGCATACT---GCCAAATGTATAAACAT----------GTGT-A-C-------AA-------AAAGCC-TTTTC-AC-CA--TATGG--A---A-TAAGCAA-----TGCTA--AGTTAGAA--A--AAAAACTTGCC-ACCACTAG-A-AAGTT--AGT
gi|17 : GCTGA-TC-CT--GA--ATTTTGT-CC--GATTTTG-TT-AAATA-GCCCTCAAGTGTAAA-TACTTTTTGATAGACATGTACATGTATT--TGA---GA-A--AATAACC--CA-T-GCA--A-A--GAA-TGTT---TGAGACCTGATAT----C-G-CACAT-
gi|18 : --CAAATGTCCTATA---ATTCACC-TGCGATTTTTTTA---GATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCATTG-GATTTCCCCCACA---GGGGAGGGGGGCGCCGAATA-TGATTTTT-TTTTT-C-T-TTG-GTTGGcgctg
gi|19 : tcCGCTTG-CCACTATGATGATCT-GT-C-TGGATTT-G-TTAAAATA--CCTCTAAAGGAGAA-AACTTTTTACT-TTCAT-CATATGTA-----GAGAGAG-A--AAAAA-CATCATT-GTA--A-A--GAACTGTC---AGAGA
gi|2 : ttgtgtacgctgAAAATTGACTTACCAAATCCACCATAAAATACAGTACAGGTCACGA---TTTT---ACCGCAAAATCCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGTGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTT-G-ATGT-TACGATTT-C-TGCGCCAG-G-CTT-GAA-TC-CAAAT-----GTCCT-------C---CGT-GCG-A------------------------CACGGTGTGTCCA---CGGAGTG-----------GCAC-GGTG-------------TGTCCACGGAG-TGA------------CGCAGT--------GTGT-----------ATGC-------------ACGG--TG-ACAGATGA------ATAAAATTTC-TT-ATTTAAAATAT-CA--CAAAT---CTATA---ATTCACC-TGCGATTTT-TTA---GATTTTGGGAAAG-GT-TA-TTTA-GTTAG-GGA-TA-----T-TACATTT-GAATTCCCCCACA---GGGAGAGGGGGCGCCA---A-TGATTTTT-TTTTTTCTT-TTG-GTTGGA-G-GGAATATT--GTGG---TGT-AAA-G--TATACT---GGTGAG--GGT--GTT-ACCAGAT-ATTTTCATCCGTTGTTA-----GGGGGTGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGC--AT--TTTT--CGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ATGGCAAGTTT--GGTATTTGTAAT-TACCA-TTAA-TTTGCCG-ATT-ATA------------ATACACAC-TTTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---ATA--CCA-----CA---ACAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGATTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTTAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ACCTCAAGA------AACA----AAG--AA-TTGTAGGTAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AACTTAT-TAT---AAAACAGCAA--TTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-TGCAAACT---GC-------------AT----------GTGT-ATT-T----TAA-------AAAGCC-TTTTC-ACGTGCCTA-AA--A---ACCAA---A-----GGCTACGGGTTAGAA--AT-TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GG-TTAAG-A-GAATCATATTTTAAGGAAA----A-GTTAAT----GTCAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AG-C-G-GTG-ACCAGC--ACGTTTTTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TT-AAATA-GCCCCTCAGTGTAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AATAA-C--CA-T-GC-----A--GAA-TGTT---TGAGACC-----T----CAG-TACAT-A-GGTGC
gi|20 : CGTTGC-CA-CT-TGA--ATTT-GT-CCTGGATTT---------TG-----CTCAAGGAAAA--ACCTTTTTATTTTTAT-CATATGTA-----GAGAGAA-A--AAAAA-T--CA-TTGT---A-A--GAA-TGTC---AGAGACC-----T----
gi|21 : tgtcaA-TTGA-TTTACCGTAATTGTG------------ATGCGCAA-ATTTT-CATCAAGATTTTT--TT----GTC----TGTTAA-ATGGG-AGTTCGTATTAT---ATATGCCA-----C----ATAGG--T-----T-TA---ACC--AC-acaaaattgaggtgcc
gi|22 : tcgcaggttttggatccatgaG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGATTT-C-TGCG-CAG-G-CTT-GAA-TC-CAAAT-----GTCCT-------
gi|22 : AT-C---CAAATGTCCTATA---ATTCACC-TGCGAataattcacctgcga
gi|23 : ggatcaccgtggaccaaaagtccacgctttagcgtgggcctagaaaaaagtcggtgccttttgatgttacgatttctgcgcaggcttgaTAT-TTTGCCA-AAA-ATA------------ATACACA--TTTTT-TTCCAAGAATTGT--TTGGG-GGC--AGTGAGAAGG--GG-GGTGGGTTTCAT---ATA--C
gi|24 : ttgttccatatattgCCTCTCAGGGAAAA-TACTTTTTATTATA-----------AT----GAGAGAA-A--AAAAA-T--CA-T-GT---ATA--AAA-TGTC---AGAGACC--------------TACATGA-GGTGCt
gi|25 : acTTTTTTTTCTACT--CCAATGGC-GCTACCT-TCCGATGTGGAGGT-TCAATAT-GAAACAAc
gi|3 : --GTGG---TGT-AAAAG--TATACT---GGTGAG--GGT--GTT-ACCAGAT-ATTTTCTTCCGTTGTCATGTAGGGGG-TGGA----ATT-AAATTAT-AAAGT-----------------ATCCTCGCGC--AT--TTTTTC-GCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAA-AAG-ACGGCAAGTTT--GGTATTTTCAAA-TACCA-TTAA--TTGCCG-ATT-ATA------------ATAC-CAC--TTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---AT---CCA-----CA---ACAGG--T-----ATTG---ACC--A--GT--TTTTCCA-A-TG-AAAATCGGGCGATTAAAT---AATGTTTTCACT-CGGAG--AATT-GTC-GGAGGCTC--TTAATCT-AC--GTT-TTCA-CCTGAATAAAAGT-GAAAAGT-CTGATCTTAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATA--------AAAA---AACTTAT-TAT---GAAACAGCAATTTTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCAAACT---GC-------------AT----------GTGT-A-CGT----TAA-------AAAGCC-TTTAC-ACGTG-CT--AA--A---A-CAA---A------GCTACGGGTTAGAA--AT-TAAAATTTGCT-AC---TAGAA-AAGTT--AGTTTA-C-T----GTAA--GGTTTAAG-A-GAATC-TATGTTAAGGAAA----A-GTTAAT----GTCAAAC-T---CTGAATACAAC-TTTTCTT---GGGC----------AGCC-G-GTG-ACCAGC--ACGTTTGTGTTTCTAAACCGAATC
gi|3 : CGCTGA-CC-CT-TGA---TTT-GT-CCTGGATTT-G-TT-AAATA-GCCC-TCAGTGTAAA-TACTTTTTAATATACATGTACATG-ATT--TGAGAGGA-A--AATAA-C--CA-T-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctgacccttgatttgtcctggatttgttaaatagccctcagtgtaaatactttttaatatacatgtacatgatttgagaggaaaataaccatg
gi|4 : gtggtgtaaaagtatactggtgagggtgttaccagatattttcttccgttgtcatgtagggggtggaattaaattataaagtatcctcgcgcattttttcgccgtgtaaagtgtcactccacttttttttttctactccaatggcgctactttccgatgtggaggttcaatatgaaaaagacggcaagtttggtattttcaaataccattaattgccgattataataccacttttttccaagagttgtttggtataagaagggagtacatattatatccacaacaggtattgaccagtttttccaatgaaaatcgggcgattaaataatgttttcactcggagaattgtcggaggctcttaatctacgttttcacctgaataaaagtgaaaagtctgatcttaagaaacgaagaattgtaggaaatgtgatacttacaataaaaaaacttattatgaaacagcaatttttttttaaatatggatatgaatacgcatcaccacgcaaactgcatgtgtacgttaaaaagcctttacacgtgctaaaacaaagctacgggttagaaattaaaatttgctactagaaaagttagtttactgtaaggtttaagagaatctatgttaaggaaaagttaatgtcaaactctgaatacaacttttcttgggcagccggtgaccagcacgtttgtgtttctaaaccgaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACG-GATCACCGTGGACCAAAAGTCCACGCTTCAGCGTGGGCCTAGAAATA-AAGGTCCGG-TGCCTTTTG-ATGTCTACGATTT-CTTGCGCCAGCGCCTT-GAA-TC-TCAAT-----GTCCT-------TCCACGT-GCGAA------------------------CAAGTTGTGTCCAGGGCGTAGTGATCAAGTTTGCGCAC-GGTAGTGCACTGGTGGCTGCCCACGGA--TGA------------CACAGT--------GTGTCCCACGGAGTGACGCCAGTGTGTATCGCACGGGCTG-ACAGACGGCAAGATATAAAAATTA-TTAATTAAAAATAT-CA--CAAA--TCATATAAACATTCACCTTGCG-TTTT-TTA---GATTTTGGAAGAG-GTGTATTTTGCGTTAGCGGA-CATGTATT-TCCATTT-GATTTTCCCCACA---AGGGGTGAGGGCGCCG---ACTGATTTTTCTTTTT-CTTCTTGAGTTGGA-GAGGTAGATTCATTGGATATGT-AAA-GCTCATACTAGAGGTGAGCCAGTC-GTT-ACCAGAT-ATTTTCTTCCGTTGTTA-----GGGG-TGGATGATATTCAAATTATAAAAGTCTGTGTAAAAACCTA-TAT-CTCGCGGCAACAGTTTTTACGTC
gi|5 : AAA-TACCG-T-AA-TTTGTCG-AAT-ATA------------ATACAAAC-TTTTT-T--CAAGATTTTT--TTTTGAGGC--A-TGAGAT-A--GG-GGTGCATATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AA-TTC-TTTTCGATG-TA-AAAATC-GGCGG-TGAATACAAATG-TTTTACT-CGGAG--A--C-AT----AGTCTT--CACATTTCAT--GTTGCTCA-CTTATTTTAAAGT-GTAAAAT-CT-ATGCCAAGAAAATCCAACG----AAATTAA-TAATTACAAATATGA-----CACT-TACG--ATATGTAAA-TGAAA---AGGTCG---AT----------CAA--------------AAATAT----TCAT-A-T---------------------------ACC--------G-CGC-TATTAACGC-------------AT----------GTGT-A-C-------AAATGACT-AAAG---TTTTC---------A-AT--A---A-CGA---A--------TCCAGATTGGAA--A---ATAATTTGCC-CC---CAA-A-AAGTT--TGTTTA-C-T----ATAA--GT-TTTA--A-GAAT-AGGTTTTATGGAAATGTTA-ATTAAT----GT-AAA--T---TT---TTGAAT-TTTTTTTCTAAGGC----------AGCC-G-GCG-AACAtctga
gi|6 : acacatttaaaataccgttta-TACCA-T-AA-TTTGCCG-AAT-ATA------------ATATGCAC-TTTTT-TTTAAAGAAGTTT--CT----GGT--A-TGAGAA-A--GG-GGTGCATATTGT---GTA--CTACAAATCA---ATACA--T-----TATG---ACT--TT-TT--TTTTCAG-G-TGAAAAATC--GTGGTTAAGT---TATA-TTTCACTCCAGAG--AA---AT----AGACTTCATACATACCACAGGCTTTT---TCTCAA--------GAAAATTACT-A---CAAAA------AAAT----AA---AA-TTGTA-GAAATGTAA-----TCCT-TACAATATATGTAAA-TAATC---AAATTAT-CAT---GAAACAACCA--ATC---------AAAAATTGTAGGAT-C-T-----G-AAT----ATTC--ATC----ACA--------A-CGTATACT---GC----------------------------C-A-T-T--------------AATGCA-CTTTG-A-------A-TA--A---A-CAA---A------GCT--GAGTTGGAA--A---ATAATTTACC-AC---TAA-A-AAGTA--AG---G-C-T----GTAA--GG-TTTAG---GAAT-ATCTTTTAAAGAAA-------TTA---------------------------------TCTT---GGGCAAAAGAAAT-AGGC-A-GCA-ACCAGC--ACGTT
gi|7 : atcaaaattgtcttacAT----ACGC--A-C----ACA--------A--ACATACT---GC-------------AT-------------T-G-T-C----TAT-------A---CC-TCTTC-ATGTG-CTA-AATAA---A-CAA---A-----GCCTATGGTCTAGAATAA--TAATATTTGCG------TAG-ATAAGTT--GCTTTA-TAT----GTAAAAGA-ATTA--A-GAAT--TCTTTTAAGGAAA------GTTAAT----GTTAAA--CTA-CTG-ATGCAAT-TTATCTT---GGGC-----------GCCGG-GTG-ACCGGCAAATTTTTTTGTTTTT--A-CGAATTCAat
gi|8 : acttatgcacggccattttctctcatttttggaataaggtgggatactggcagattttgaaggacgT-TGA---TTT-GTACCTGGATTT-GTTT-AAATATTCCTCTCAA-GAAAT-TACTTTTTATTTT---------TTTATTTGTGAGAGGACAATAAAAA-T--CA-TGGTATAA-A--GAA-TGTC---AGAGCCC-----T----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta
gi|9 : ctgtgtacgctagcttagccatggaGA------AACGCATTAAA--AA-TTGTAGGAAAT-TAAGTACTTACTGTACA--ATAT-TAAA-TAAAATAAAGATTAT-TATCTTGAA-CGGCAA--TTTTTTT-----AACTTTT---GGAT-A-TTG---A-AAT----ACTCTTATCTGACACCCATCAACAA-CACACACT---GCC------------ATTTTCTAAAAAGCAT-A-C-TGATGTAGTCTACCTGAAGCT-CTTT--ATCCG-CTT-AA--A---A-TAA---ACTCAAAGCTATGT-TTAGGA--A---AAAATTTGCCCGC---TAG-A-ACGTTTTAGCTTA-T-TTGGTGTAA--GG-ATTA--A-GAAT-ATCTTTTAAGGAAA----AAGTTAATTGATATAAAC--T---CGA-ATACAACCTTTTCTT---GGGC----------CGCC-G-Gaacaaaatgagggtgctttcttcaatcagtaagcgactgacgtacgttatattccatttcatgaaaaggttgagaggaatgggtatgagtttgtgtttttatttttcttgttcaaagaatgttttttacggactgctggcgtctaagaataattaaacagatcaagtatccctcaatttttgacaattaaacgatggccattat
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 222 22 1 111 111 111111 222222222222 111 44444444444 5555555555555 777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 222222 11 1 1 111 111 111 1 111 1 1 1 1 1 1 2222222 1 111 11111 1 1 1 1 1 11 111 1 1 11 111 11 22 1 1 22222 1 2222 1 1 111 1 222222 1 4444444 11 1 1 1 1 111 2 222222222222 1111 11111 11111 111111111 1111 111 11111111111 11 11 111111 11111111111 11111 111 1111 22222222222222 1111 2222222 11111111 8888888888888888888888888888888888888888888888888 11111111111 2222222 222 1111 11111 22 222222 1111 2222222222 44444444444 1 6666666666666666666666666666666666666666666666666666666666666666 111 1 11 1111 1111 111 44444444444444 111
lowQualScore : 1 5 1 1 1 5 111 000 1 00 6 0 3 6 6 555 6 1 7 6 6 6 6 111 6 6 999999 222222222222 8 8 0 8 444 8 77777777777 5555555555555 1 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 0 888888 00 0 3 0 444 666 444 8 0 0 777 0 0 0 0 0 0 6666666 0 9 777 0 2 88888 3 0 0 3 0 0 0 7 33 777 0 0 33 777 33 55 0 0 3 3 2 0 55555 0 1111 3 0 0 7 777 0 2 999999 888 3 3333333 33 0 0 0 8 8 0 0 666 0 1 4 44 0 4 4 4 000000000000 3 4 4 3 1 0 55 5555 55 4 9999 44 0 0 777 55 11111 777 66 11111 777 777777777 5 2222 5 5 6 000 6 0 8 88888888888 11 0 6 11 5 8 11 6 6 6 1 666666 44444444444 5 3 3 3 44444 5 77 55 5 000 3 5 1111 1 0 88888888888888 5555 5 5 2222222 9999 0 66 999999 66666666 66 5 777 8888888888888888888888888888888888888888888888888 2 4 99999999999 66 777 4 777 6666666 7 0 66 999 55 777 4 4 66 5 5 0000 66 5 99999 77 5 222222 0000 7 5555555555 5 888 22222222222 2 5 5 1 5 99 1 3 0 4444444444444444444444444444444444444444444444444444444444444444 6 6 5 222 5 5 5 888 1 33 6 1 55 0 3 55 99 0 0 3333 5 66 1 2222 5 5 99999 1 5 5 000 66666666666666 444
lowQualScore : . . . . . . ... ... . .. . . . . . ... . . . . . . . ... . . ...... ............ . . . . ... . ........... ............. . . ................................................................................. .. . ...... .. . . . ... ... ... . . . ... . . . . . . ....... . . ... . . ..... . . . . . . . . .. ... . . .. ... .. .. . . . . . . ..... . .... . . . . ... . . ...... ... . ....... .. . . . . . . . ... . . . .. . . . . ............ . . . . . . .. .... .. . .... .. . . ... .. ..... ... .. ..... ... ......... . .... . . . ... . . . ........... .. . . .. . . .. . . . . ...... ........... . . . . ..... . .. .. . ... . . .... . . .............. .... . . ....... .... . .. ...... ........ .. . ... ................................................. . . ........... .. ... . ... ....... . . .. ... .. ... . . .. . . .... .. . ..... .. . ...... .... . .......... . ... ........... . . . . . .. . . . ................................................................ . . . ... . . . ... . .. . . .. . . .. .. . . .... . .. . .... . . ..... . . . ... .............. ...
lowQualScore : 0 5 0 0 0 5 555 555 0 00 0 8 8 7 7 222 7 0 3 7 7 7 7 777 7 7 222222 444444444444 0 0 8 0 000 0 55555555555 0000000000000 0 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 0 888888 22 0 2 0 222 444 000 0 8 0 555 0 0 0 0 0 0 0000000 0 8 555 2 5 55555 2 0 0 2 0 0 0 3 88 555 0 0 88 555 88 00 0 0 2 5 5 8 00000 0 2222 2 0 0 0 555 0 5 888888 222 3 3333333 88 0 0 0 0 2 0 2 000 6 0 0 55 4 0 0 0 555555555555 0 0 0 4 0 8 55 5555 55 0 9999 55 5 9 000 55 11111 888 11 11111 888 777777777 0 1111 7 0 0 000 7 8 0 22222222222 00 6 4 00 0 0 88 7 7 7 7 444444 33333333333 7 0 0 0 33333 7 99 77 7 000 0 7 7777 4 3 11111111111111 6666 0 0 6666666 4444 1 11 666666 11111111 33 3 888 0000000000000000000000000000000000000000000000000 3 4 66666666666 11 888 4 888 2222222 4 1 11 777 22 888 4 4 11 0 0 6666 99 0 66666 55 9 111111 6666 6 8888888888 0 888 00000000000 5 0 0 4 7 22 0 2 0 0000000000000000000000000000000000000000000000000000000000000000 7 7 7 999 7 7 0 666 4 66 1 0 44 5 6 00 55 2 1 2222 0 99 0 9999 0 0 33333 4 7 7 000 55555555555555 333
consensus : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT-AGA---GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
Reference ( family-5038 ) : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGTCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT-AGA---GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
gi|1 : AA-CCACATGGTCACCGATGAACAAAAG-CCACGCTTTAGCGTGGGCCTAGAAA-ACAAG---CGGCTGCTCTTTGCATGT-TACGATTTTC-TGCGCCAG-G-CTT-GAATTCACAAATTTTTTGTCCCTTTTTTCC---CGTTGCGGAACACGGTCGTGTCCA---CGGAGGTG-----------GCACGGTG-------------TACCCACGGAGTGA------------CACCAGT--------GTGTCTCCGGAGGTGACGCAGTGTGT-----------ACGC-------------ACGG--TGCACAGACCG------ATAAAATTTCCTT-ATTTAAAAAATTCAACCAAAT---CTATA---ATTCACC-TGCGATCTT-TTATCAGATTTTGGGAAAGCGT-TA-TTTG-GTTAG-GGACTA-----TCTCCATTTTGA-TTCCCCCACAAGCGGGGGGGGGGGGG--A---A-TGA-ATTT-TTTTT-CTT-TTG-GTTGTCCGAGGAATATT--GTGG---TGTTAAA-G--TATACG---GATGAG--GGTCTGTTTACCAGATTATTT------GTT--------------TGGA----A-T-AAATCTT-AAAGTTTGT---AAAACCTACTATCCTCGCGCCAA---TTTCTCCGCCGTCTAACAGTGTCACATATTGATCCAACTTTTTTTTTCTACTCCCCAATGGCTGCTACTTCTCCGATGTGGGAGTATCAATAT-GAACAAAGCACGGCAAGTTTTGGATATTTGCAAACTACCATTTAACTTTGCAG-ATT-ATA------------ATACACACTTTTTT-TTCCAAGAGGTATGGTT----TGT--A-TAAGAA-A--GGAAGTACATA-TATTTAATA---CA-----CAAACACGGT--T-----TATGCACGCG--AC-GT--ATTTCCA-G-TGAAAAATC-GGCGATT-AAT---AA-G-TT--ACT-CGGAGAAAATTGATCGGGAGGCTC--TAAATCTTAC--GTTGTTCAGCCTGAATAAAAGTGGAAAAGT-CT-ATCTTAAGA------AACG----AAG--AATTTTTAGGAAATGTGA-----TACT-TACA--ATATGTAAATTGCAA---AACTTATGCAT---AAAACAGCAT--TTCTTTTTTTTAAAATAT----GGATCATT-----G-AAT----ACGC--ATC----ACC--------ACCGCA-ACT---GC-------------AT----------GTGTAA-CGT----TAA-------ATTGCCTTTTTC-ACGCG-CT--AA--A---A-CAA---A-----GCCTACGGGTTAGAA--AATTAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTAGC-T----GTAA--GGTTT-AGA---GAATC-TATCTTAAGGAAA----A-GTTAAT----GTAATACCT---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-GCGTGAAAAAGC--ACGTTTATTTTTCTAAA-CGAATCCA
gi|1 : CGCTGAACC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TTAAAATA-GCCCCTCAGTGTAAATTACTTTTTAATATACATGTACATGT-TT--TGAGAGGA-A--AATAA-CG-CA-T-G---CCACGAAA-TGTTTGAAGA-ACC-----TTCTAT-GCTACAT-ACGGTGCgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagccccgctgaacccttgaatttgtcctggattgttaaaatagcccctcagtgtaaattactttttaatatacatgtacatgttttgagaggaaaataacgcatgccacgaaatgtttgaagaaccttctatgctacatacggtgcctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|10 : aaccacatggtcaccgatgaacaaaagccacgctttagcgtgggcctagaaaacaagcggctgctctttgcatgttacgattttctgcgccaggcttgaattcacaaattttttgtcccttttttcccgttgcggaacacggtcgtgtccacggaggtggcacggtgtacccacggagtgacaccagtgtgtctccggaggtgacgcagtgtgtacgcacggtgcacagaccgataaaatttccttatttaaaaaattcaaccaaatctataattcacctgcgatcttttatcagattttgggaaagcgttatttggttagggactatctccattttgattcccccacaagcgggggggggggggaatgaattttttttcttttggttgtccgaggaatattgtggtgttaaagtatacggatgagggtctgtttaccagattatttgtttggaataaatcttaaagtttgtaaaacctactatcctcgcgccaatttctccgccgtctaacagtgtcacatattgatccaactttttttttctactccccaatggctgctacttctccgatgtgggagtatcaatatgaacaaagcacggcaagttttggatatttgcaaactaccatttaactttgcagattataatacacacttttttttccaagaggtatggtttgtataagaaaggaagtacatatatttaatacacaaacacggtttatgcacgcgacgtatttccagtgaaaaatcggcgattaataagttactcggagaaaattgatcgggaggctctaaatcttacgttgttcagcctgaataaaagtggaaaagtctatcttaagaaacgaagaatttttaggaaatgtgatacttacaatatgtaaattgcaaaacttatgcataaaacagcatttcttttttttaaaatatggatcattgaatacgcatcaccaccgcaactgcatgtgtaacgttaaattgcctttttcacgcgctaaaacaaagcctacgggttagaaaattaaaatttgccactagaaagttagtttagctgtaaggtttagagaatctatcttaaggaaaagttaatgtaatacctctgatacaacttttcttgggcagccgcgtgaaaaagcacgtttatttttctaaacgaatccagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagcccAAGT-GAAAAAT-CA-ATCTCAAGA------AA------------A-TT-----AAA-----------AC---ACA--A-----ACA-TAAAA------TTGT-T-----GAAAATGTGA--TACTTA------AAATAT----GCCT-A-CAACTAG-ATT----ATGC--A------GCC--------A-T-TAAA-----GC-------------AC----------CCAT-A--------TAC-------AATGCT-TTTTCCATGTG-CTA-AA--ACAAA-CAA---A-----G-CTA--GGTTGGAA--AG-TAA--TTTGCC-AC---TAA-A-AAGTT--AGCTGA-C-T----CAAA--GGCTT-GTGCATGAAT-AT-TTTTAAGGAAA----T-GTTAAT----GTGAGA--CATATTG-AAATAAC-TTTTCTT---GAACATAAATAATGAGAC-A-GTG-ACCAGC--ACTTTctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|11 : g-TACCG-T-AT-TTTGCCG-AAT-ATG------------ATATGCAC-TTTTT-TTC-AAGAATATT--TT----GGCCAA-TGA--A-A--GG-AGTGTGGAAAAT---ACA--CCA-----CA---ATAGAATT-----TA-G---ACC--CCTAT--TTTTTAA-GACG-AAAATT-GGCAGTTTAGT---ATTG-Ta
gi|12 : AA-TACCG-T-AC-TTTGTAG-AAT-GTACTAGTAGTGTAAATACACAC-CTTTT-T--CAAGAATATT--TT----GAC--A-TGAGAA-----------------AT---ATA--GCA-----CA---ATAGG--TTTAAATATG---ACT--GA-GTTCTTTTCCA-G-GT-AAAATattatgagccatattctggaatttgatgctgttaaactttgatttcagattctgaataagaattagtataatattgcctaacattgattgtgggtaaatatgattacctgatgttacaagctat
gi|13 : tgcagacattgaaagtttagAGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA--CACGAGACC-CTGTGGACCAAAA-CCCACACTTTAGCATGGGCCTAGCAA-A-ATG--ACGG-----ATTTG-AAGT-TGCGA-TTTC-TTTGCCAC-C-CTTGGAATTCG-AG------AGCCC-------TC---CA-TGT--AACACGGT-GTGTCTA---TGGA-ttttaaatcgacaatgaatacaattaaatcgtttttactgtctcagtcttcattattactgta
gi|14 : acttctgtaataGCTTTAGCGTGGGACTAGAAA-A-AAG--TCGG-TGCATTT-A-ATGT-TAAGA-TTTC-TGCGCCAG-T-CTT-CAATCCA-AT------TGTCC-------TC---CG-TGC-GAANNNNNN-NNNNNNN---NNNN-NNN-----------NNNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNCCTCG-GAGTGACGCAGTGTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGA------ATAAATTTT-TTC-A-TTAAA
gi|15 : AATATTGAAATAGA-AAAATAAGTTT-------TTGCATA-TACCA-T-AA-TTTGCCA-AAT-ATA------------ATGTGCAC-TTTCTATTTCAAGATTTTT--TT----G-C--A-TGAGAA-A--GG-GGTGTGTATTAT---ATA--CCA-----CA---AT-GG--T-----TATG---AACAAAT-TT--TTTTCCA-G--G-TAAATT-GGCAG-TGAAT---A
gi|16 : gagtgacatgcttgagtAATAT----GAAT-A-T-----GTAATCACCACAC--ATC----ACC--------A-AGCATACT---GCCAAATGTATAAACAT----------GTGT-A-C-------AA-------AAAGCC-TTTTC-AC-CA--TATGG--A---A-TAAGCAA-----TGCTA--AGTTAGAA--A--AAAAACTTGCC-ACCACTAG-A-AAGTT--AGT
gi|17 : GCTGA-TC-CT--GA--ATTTTGT-CC--GATTTTG-TT-AAATA-GCCCTCAAGTGTAAA-TACTTTTTGATAGACATGTACATGTATT--TGA---GA-A--AATAACC--CA-T-G---CAAAG-AA-TGTT---TGAGACCTGATAT----C-G-CACAT-
gi|18 : --CAAATGTCCTATA---ATTCACC-TGCGATTTTTTT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTGGATTTCCCCCACA---GGGGAGGGGGGCGCCGAATA-TGATTTTT-TTTTT-C-T-TTG-GTTG-Gcgctg
gi|19 : tcCGCTTG-CCACTATGATGATCT-GT-C-TGGATTT-G-TTAAAATA--CCTCTAAAGGAGAA-AACTTTTTACT-TTCAT-CATATGTA-----GAGAGAG-A--AAAAA-CATCATT-G---TAAAG-AACTGTC---AGAGA
gi|2 : ttgtgtacgctgAAAATTGACTTACCAAATCCACCATAAAATACAGTACAGGTCACGA---TTTT---ACCGCAAAATCCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGTGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTT-G-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GA-CACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGTCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ATGC-------------ACGG--TG-ACAGATGA------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAAT---CTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTA-GTTAG-GGA-TA-----T-TACA-TTTGAATTCCCCCACA---GGGAGAGGGGGCGCCA---A-TGATTTTT-TTTTTTCTT-TTG-GTTG-GAG-GGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGT--G-TTACCAGA-TATTTTCATCCGTTGTTA-----GGGGGTGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGC--AT--TTTT--CGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ATGGCAAGTTT--GGTATTTGTAAT-TACCA-TTAA-TTTGCCG-ATT-ATA------------ATACACAC-TTTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---ATA--CCA-----CA---ACAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGATTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTTAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ACCTCAAGA------AACA----AAG--AA-TTGTAGGTAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AACTTAT-TAT---AAAACAGCAA--TTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-TGCAAACT---GC-------------AT----------GTGT-ATT-T----TAA-------AAAGCC-TTTTC-ACGTGCCTA-AA--A---ACCAA---A-----GGCTACGGGTTAGAA--AT-TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTA-AGA---GAATCATATTTTAAGGAAA----A-GTTAAT----GTCAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AG-C-G-GTG-ACCAGC--ACGTTTTTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TT-AAATA-GCCCCTCAGTGTAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AATAA-C--CA-T-G---C--AG-AA-TGTT---TGAGACC-----T----CAG-TACAT-A-GGTGC
gi|20 : CGTTGC-CA-CT-TGA--ATTT-GT-CCTGGATTT---------TG-----CTCAAGGAAAA--ACCTTTTTATTTTTAT-CATATGTA-----GAGAGAA-A--AAAAA-T--CA-TTG---TAA-G-AA-TGTC---AGAGACC-----T----
gi|21 : tgtcaGCAGGTTT--TGGATCCATGAA-T------TGA-TTTACCGTAATTGTG------------ATGCGCAA-ATTTT-CATCAAGATTTTT--TT----GTC----TGTTAA-ATGGG-AGTTCGTATTAT---ATATGCCA-----C----ATAGG--T-----T-TA---ACC--AC-acaaaattgaggtgcc
gi|22 : tcG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCG-CAG-G-CTT-GAATCCA-AA------TGTCC-------T
gi|22 : A-TC---CAAATGTCCTATA---ATTCACC-TGCGAataattcacctgcga
gi|23 : ggatcaccgtggaccaaaagtccacgctttagcgtgggcctagaaaaaagtcggtgccttttgatgttacgatttctgcgcaggcttgaTTCCATA-TATTG-T-AT-TTTGCCA-AAA-ATA------------ATACACA--TTTTT-TTCCAAGAATTGT--TTGGG-GGC--AGTGAGAAGG--GG-GGTGGGTTTCAT---ATA--C
gi|24 : ttgCCTCTCAGGGAAAA-TACTTTTTATTATA-----------AT----GAGAGAA-A--AAAAA-T--CA-T-G---TATAA-AA-TGTC---AGAGACC--------------TACATGA-GGTGCt
gi|25 : acTTTTTTTTCTACT--CCAATGGC-GCTACCT-TCCGATGTGGAGGT-TCAATAT-GAAACAAc
gi|3 : --GTGG---TG-TAAAAG--TATACT---GGTGAG--GGT--G-TTACCAGA-TATTTTCTTCCGTTGTCATGTAGGGGG-TGGA----ATT-AAATTAT-AAAGT-----------------ATCCTCGCGC--AT--TTTTTC-GCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAA-AAG-ACGGCAAGTTT--GGTATTTTCAAA-TACCA-TTAA--TTGCCG-ATT-ATA------------ATAC-CAC--TTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---AT---CCA-----CA---ACAGG--T-----ATTG---ACC--A--GT--TTTTCCA-A-TG-AAAATCGGGCGATTAAAT---AATGTTTTCACT-CGGAG--AATT-GTC-GGAGGCTC--TTAATCT-AC--GTT-TTCA-CCTGAATAAAAGT-GAAAAGT-CTGATCTTAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATA--------AAAA---AACTTAT-TAT---GAAACAGCAATTTTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCAAACT---GC-------------AT----------GTGT-A-CGT----TAA-------AAAGCC-TTTAC-ACGTG-CT--AA--A---A-CAA---A------GCTACGGGTTAGAA--AT-TAAAATTTGCT-AC---TAGAA-AAGTT--AGTTTA-C-T----GTAA--GGTTTAAGA---GAATC-TATGTTAAGGAAA----A-GTTAAT----GTCAAAC-T---CTGAATACAAC-TTTTCTT---GGGC----------AGCC-G-GTG-ACCAGC--ACGTTTGTGTTTCTAAACCGAATC
gi|3 : CGCTGA-CC-CT-TGA---TTT-GT-CCTGGATTT-G-TT-AAATA-GCCC-TCAGTGTAAA-TACTTTTTAATATACATGTACATG-ATT--TGAGAGGA-A--AATAA-C--CA-T-G---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctgacccttgatttgtcctggatttgttaaatagccctcagtgtaaatactttttaatatacatgtacatgatttgagaggaaaataaccatg
gi|4 : gtggtgtaaaagtatactggtgagggtgttaccagatattttcttccgttgtcatgtagggggtggaattaaattataaagtatcctcgcgcattttttcgccgtgtaaagtgtcactccacttttttttttctactccaatggcgctactttccgatgtggaggttcaatatgaaaaagacggcaagtttggtattttcaaataccattaattgccgattataataccacttttttccaagagttgtttggtataagaagggagtacatattatatccacaacaggtattgaccagtttttccaatgaaaatcgggcgattaaataatgttttcactcggagaattgtcggaggctcttaatctacgttttcacctgaataaaagtgaaaagtctgatcttaagaaacgaagaattgtaggaaatgtgatacttacaataaaaaaacttattatgaaacagcaatttttttttaaatatggatatgaatacgcatcaccacgcaaactgcatgtgtacgttaaaaagcctttacacgtgctaaaacaaagctacgggttagaaattaaaatttgctactagaaaagttagtttactgtaaggtttaagagaatctatgttaaggaaaagttaatgtcaaactctgaatacaacttttcttgggcagccggtgaccagcacgtttgtgtttctaaaccgaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACG-GATCACCGTGGACCAAAAGTCCACGCTTCAGCGTGGGCCTAGAAATA-AAGGTCCGG-TGCCTTTTG-ATGTCTACGA-TTTCTTGCGCCAGCGCCTT-GAATCTC-AA------TGTCC-------TTCCACG-TGC-GAACAAGTT-GTGTCCAGGGCGTA-GTGATCAAGTTTGCGCACGGTAGTGCACTGGTGGCTGCCCACGGA-TGA------------CA-CAGT--------GTG----------------------TCCCACGGAGTGACGCCAGTGTGTATCGCACGGGCTG-ACAGACGGCAAGATATAAAAATT-ATTAATTAAAAATA-TCA--CAAA--TCATATAAACATTCACCTTGCG-TTTT-TT---AGATTTTGGAAGAG-GTGTATTTTGCGTTAGCGGA-CATGTATT-TCCA-TTTGATTTTCCCCACA---AGGGGTGAGGGCGCCG---ACTGATTTTTCTTTTT-CTTCTTGAGTTG-GAGAGGTAGATTCATTGGATATG-TAAA-GCTCATACTAGAGGTGAGCCAGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGATGATATTCAAATTATAAAAGTCTGTGTAAAAACCTA-TAT-CTCGCGGCAACAGTTTTTACGTC
gi|5 : AAA-TACCG-T-AA-TTTGTCG-AAT-ATA------------ATACAAAC-TTTTT-T--CAAGATTTTT--TTTTGAGGC--A-TGAGAT-A--GG-GGTGCATATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AA-TTC-TTTTCGATG-TA-AAAATC-GGCGG-TGAATACAAATG-TTTTACT-CGGAG--A--C-AT----AGTCTT--CACATTTCAT--GTTGCTCA-CTTATTTTAAAGT-GTAAAAT-CT-ATGCCAAGAAAATCCAACG----AAATTAA-TAATTACAAATATGA-----CACT-TACG--ATATGTAAA-TGAAA---AGGTCG---AT----------CAA--------------AAATAT----TCAT-A-T---------------------------ACC--------G-CGC-TATTAACGC-------------AT----------GTGT-A-C-------AAATGACT-AAAG---TTTTC---------A-AT--A---A-CGA---A--------TCCAGATTGGAA--A---ATAATTTGCC-CC---CAA-A-AAGTT--TGTTTA-C-T----ATAA--GTTTT-A-A---GAAT-AGGTTTTATGGAAATGTTA-ATTAAT----GT-AAA--T---TT---TTGAAT-TTTTTTTCTAAGGC----------AGCC-G-GCG-AACAtctga
gi|6 : acacatttaaaataccgttta-TACCA-T-AA-TTTGCCG-AAT-ATA------------ATATGCAC-TTTTT-TTTAAAGAAGTTT--CT----GGT--A-TGAGAA-A--GG-GGTGCATATTGT---GTA--CTACAAATCA---ATACA--T-----TATG---ACT--TT-TT--TTTTCAG-G-TGAAAAATC--GTGGTTAAGT---TATA-TTTCACTCCAGAG--AA---AT----AGACTTCATACATACCACAGGCTTTT---TCTCAA--------GAAAATTACT-A---CAAAA------AAAT----AA---AA-TTGTA-GAAATGTAA-----TCCT-TACAATATATGTAAA-TAATC---AAATTAT-CAT---GAAACAACCA--ATC---------AAAAATTGTAGGAT-C-T-----G-AAT----ATTC--ATC----ACA--------A-CGTATACT---GC----------------------------C-A-T-T--------------AATGCA-CTTTG-A-------A-TA--A---A-CAA---A------GCT--GAGTTGGAA--A---ATAATTTACC-AC---TAA-A-AAGTA--AG---G-C-T----GTAA--GGTTT-AG----GAAT-ATCTTTTAAAGAAA-------TTA---------------------------------TCTT---GGGCAAAAGAAAT-AGGC-A-GCA-ACCAGC--ACGTT
gi|7 : atcaaaattgtcttacAT----ACGC--A-C----ACA--------A--ACATACT---GC-------------AT-------------T-G-T-C----TAT-------A---CC-TCTTC-ATGTG-CTA-AATAA---A-CAA---A-----GCCTATGGTCTAGAATAA--TAATATTTGCG------TAG-ATAAGTT--GCTTTA-TAT----GTAAAAGAATT-A-A---GAAT--TCTTTTAAGGAAA------GTTAAT----GTTAAA--CTA-CTG-ATGCAAT-TTATCTT---GGGC-----------GCCGG-GTG-ACCGGCAAATTTTTTTGTTTTT--A-CGAATTCAat
gi|8 : acttatgcacggccattttctctcatttttggaataaggtgggatactggcagattttgaaggacgT-TGA---TTT-GTACCTGGATTT-GTTT-AAATATTCCTCTCAA-GAAAT-TACTTTTTATTTT---------TTTATTTGTGAGAGGACAATAAAAA-T--CA-T-GGTATAAAG-AA-TGTC---AGAGCCC-----T----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta
gi|9 : ctgtgtacgctagcttagccatggaGA------AACGCATTAAA--AA-TTGTAGGAAAT-TAAGTACTTACTGTACA--ATAT-TAAA-TAAAATAAAGATTAT-TATCTTGAA-CGGCAA--TTTTTTT-----AACTTTT---GGAT-A-TTG---A-AAT----ACTCTTATCTGACACCCATCAACAA-CACACACT---GCC------------ATTTTCTAAAAAGCAT-A-C-TGATGTAGTCTACCTGAAGCT-CTTT--ATCCG-CTT-AA--A---A-TAA---ACTCAAAGCTATGT-TTAGGA--A---AAAATTTGCCCGC---TAG-A-ACGTTTTAGCTTA-T-TTGGTGTAA--GGATT-A-A---GAAT-ATCTTTTAAGGAAA----AAGTTAATTGATATAAAC--T---CGA-ATACAACCTTTTCTT---GGGC----------CGCC-G-Gaacaaaatgagggtgctttcttcaatcagtaagcgactgacgtacgttatattccatttcatgaaaaggttgagaggaatgggtatgagtttgtgtttttatttttcttgttcaaagaatgttttttacggactgctggcgtctaagaataattaaacagatcaagtatccctcaatttttgacaattaaacgatggccattat
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 222 22 1 111 111 111111 222222222222 111 44444444444 5555555555555 777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 222222 11 1 1 111 111 111 1 111 1 1 1 1 1 1 2222222 1 111 11111 1 1 1 1 1 11 111 1 1 11 111 11 22 1 1 22222 1 2222 1 1 111 1 222222 1 4444444 11 1 1 1 1 111 2 222222222222 1111 11111 11111 111111111 1111 111 11111111111 11 11 111111 11111111111 11111 111 1111 22222222222222 1111 2222222 11111111 8888888888888888888888888888888888888888888888888 11111111111 2222222 222 1111 11111 22 222222 1111 2222222222 44444444444 1 6666666666666666666666666666666666666666666666666666666666666666 111 1 11 1111 1111 111 44444444444444 111
lowQualScore : 1 5 1 1 1 5 111 000 1 00 6 0 3 6 6 555 6 1 7 6 6 6 6 111 6 6 999999 222222222222 8 8 0 8 444 8 77777777777 5555555555555 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 0 888888 00 0 3 0 444 666 444 8 0 0 777 0 0 0 0 0 0 6666666 0 9 777 0 2 88888 3 0 0 3 0 0 0 7 33 777 0 0 33 777 33 55 0 0 3 3 2 0 55555 0 1111 3 0 0 7 777 0 2 999999 888 3 3333333 33 0 0 0 8 8 0 0 666 0 1 4 44 0 4 4 4 000000000000 3 4 4 3 1 0 55 5555 55 4 9999 44 0 0 777 55 11111 777 66 11111 777 777777777 5 2222 5 5 6 000 6 0 8 88888888888 11 0 6 11 5 8 11 6 6 6 1 666666 44444444444 5 3 3 3 44444 5 77 55 5 000 3 5 1111 1 0 88888888888888 5555 5 5 2222222 9999 0 66 999999 66666666 66 5 777 8888888888888888888888888888888888888888888888888 2 4 99999999999 66 777 4 777 6666666 7 0 66 999 55 777 4 4 66 5 5 0000 66 5 99999 77 5 222222 0000 7 5555555555 5 888 22222222222 2 5 5 1 5 99 1 3 0 4444444444444444444444444444444444444444444444444444444444444444 6 6 5 222 5 5 5 888 1 33 6 1 55 0 3 55 99 0 0 3333 5 66 1 2222 5 5 99999 1 5 5 000 66666666666666 444
lowQualScore : . . . . . . ... ... . .. . . . . . ... . . . . . . . ... . . ...... ............ . . . . ... . ........... ............. . ................................................................................. .. . ...... .. . . . ... ... ... . . . ... . . . . . . ....... . . ... . . ..... . . . . . . . . .. ... . . .. ... .. .. . . . . . . ..... . .... . . . . ... . . ...... ... . ....... .. . . . . . . . ... . . . .. . . . . ............ . . . . . . .. .... .. . .... .. . . ... .. ..... ... .. ..... ... ......... . .... . . . ... . . . ........... .. . . .. . . .. . . . . ...... ........... . . . . ..... . .. .. . ... . . .... . . .............. .... . . ....... .... . .. ...... ........ .. . ... ................................................. . . ........... .. ... . ... ....... . . .. ... .. ... . . .. . . .... .. . ..... .. . ...... .... . .......... . ... ........... . . . . . .. . . . ................................................................ . . . ... . . . ... . .. . . .. . . .. .. . . .... . .. . .... . . ..... . . . ... .............. ...
lowQualScore : 0 5 0 0 0 5 555 555 0 00 0 8 8 7 7 222 7 0 3 7 7 7 7 777 7 7 222222 444444444444 0 0 8 0 000 0 55555555555 0000000000000 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 0 888888 22 0 2 0 222 444 000 0 8 0 555 0 0 0 0 0 0 0000000 0 8 555 2 5 55555 2 0 0 2 0 0 0 3 88 555 0 0 88 555 88 00 0 0 2 5 5 8 00000 0 2222 2 0 0 0 555 0 5 888888 222 3 3333333 88 0 0 0 0 2 0 2 000 6 0 0 55 4 0 0 0 555555555555 0 0 0 4 0 8 55 5555 55 0 9999 55 5 9 000 55 11111 888 11 11111 888 777777777 0 1111 7 0 0 000 7 8 0 22222222222 00 6 4 00 0 0 88 7 7 7 7 444444 33333333333 7 0 0 0 33333 7 99 77 7 000 0 7 7777 4 3 11111111111111 6666 0 0 6666666 4444 1 11 666666 11111111 33 3 888 0000000000000000000000000000000000000000000000000 3 4 66666666666 11 888 4 888 2222222 4 1 11 777 22 888 4 4 11 0 0 6666 99 0 66666 55 9 111111 6666 6 8888888888 0 888 00000000000 5 0 0 4 7 22 0 2 0 0000000000000000000000000000000000000000000000000000000000000000 7 7 7 999 7 7 0 666 4 66 1 0 44 5 6 00 55 2 1 2222 0 99 0 9999 0 0 33333 4 7 7 000 55555555555555 333
consensus : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT-AGA---GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
Reference ( family-5038 ) : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT-AGA---GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
gi|1 : AA-CCACATGGTCACCGATGAACAAAAG-CCACGCTTTAGCGTGGGCCTAGAAA-ACAAG---CGGCTGCTCTTTGCATGT-TACGATTTTC-TGCGCCAG-G-CTT-GAATTCACAAATTTTTTGTCCCTTTTTTCC---CGTTGCGGAACACGGTCGTGTCCA---CGGAGGTG-----------GCACGGTG-------------TACCCACGGAGTGA------------CACCAGT--------GTGTCTCCGGAGGTGACGCAGTGTGT-----------ACGC-------------ACGG--TGCACAGACCG------ATAAAATTTCCTT-ATTTAAAAAATTCAACCAAAT---CTATA---ATTCACC-TGCGATCTT-TTATCAGATTTTGGGAAAGCGT-TA-TTTG-GTTAG-GGACTA-----TCTCCATTTTGA-TTCCCCCACAAGCGGGGGGGGGGGGG--A---A-TGA-ATTT-TTTTT-CTT-TTG-GTTGTCCGAGGAATATT--GTGG---TGTTAAA-G--TATACG---GATGAG--GGTCTGTTTACCAGATTATTT------GTT--------------TGGA----A-T-AAATCTT-AAAGTTTGT---AAAACCTACTATCCTCGCGCCAA---TTTCTCCGCCGTCTAACAGTGTCACATATTGATCCAACTTTTTTTTTCTACTCCCCAATGGCTGCTACTTCTCCGATGTGGGAGTATCAATAT-GAACAAAGCACGGCAAGTTTTGGATATTTGCAAACTACCATTTAACTTTGCAG-ATT-ATA------------ATACACACTTTTTT-TTCCAAGAGGTATGGTT----TGT--A-TAAGAA-A--GGAAGTACATA-TATTTAATA---CA-----CAAACACGGT--T-----TATGCACGCG--AC-GT--ATTTCCA-G-TGAAAAATC-GGCGATT-AAT---AA-G-TT--ACT-CGGAGAAAATTGATCGGGAGGCTC--TAAATCTTAC--GTTGTTCAGCCTGAATAAAAGTGGAAAAGT-CT-ATCTTAAGA------AACG----AAG--AATTTTTAGGAAATGTGA-----TACT-TACA--ATATGTAAATTGCAA---AACTTATGCAT---AAAACAGCAT--TTCTTTTTTTTAAAATAT----GGATCATT-----G-AAT----ACGC--ATC----ACC--------ACCGCA-ACT---GC-------------AT----------GTGTAA-CGT----TAA-------ATTGCCTTTTTC-ACGCG-CT--AA--A---A-CAA---A-----GCCTACGGGTTAGAA--AATTAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTAGC-T----GTAA--GGTTT-AGA---GAATC-TATCTTAAGGAAA----A-GTTAAT----GTAATACCT---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-GCGTGAAAAAGC--ACGTTTATTTTTCTAAA-CGAATCCA
gi|1 : CGCTGAACC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TTAAAATA-GCCCCTCAGTGTAAATTACTTTTTAATATACATGTACATGT-TT--TGAGAGGA-A--AATAA-CG-CA-T-G---CCACGAAA-TGTTTGAAGA-ACC-----TTCTAT-GCTACAT-ACGGTGCgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagccccgctgaacccttgaatttgtcctggattgttaaaatagcccctcagtgtaaattactttttaatatacatgtacatgttttgagaggaaaataacgcatgccacgaaatgtttgaagaaccttctatgctacatacggtgcctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|10 : aaccacatggtcaccgatgaacaaaagccacgctttagcgtgggcctagaaaacaagcggctgctctttgcatgttacgattttctgcgccaggcttgaattcacaaattttttgtcccttttttcccgttgcggaacacggtcgtgtccacggaggtggcacggtgtacccacggagtgacaccagtgtgtctccggaggtgacgcagtgtgtacgcacggtgcacagaccgataaaatttccttatttaaaaaattcaaccaaatctataattcacctgcgatcttttatcagattttgggaaagcgttatttggttagggactatctccattttgattcccccacaagcgggggggggggggaatgaattttttttcttttggttgtccgaggaatattgtggtgttaaagtatacggatgagggtctgtttaccagattatttgtttggaataaatcttaaagtttgtaaaacctactatcctcgcgccaatttctccgccgtctaacagtgtcacatattgatccaactttttttttctactccccaatggctgctacttctccgatgtgggagtatcaatatgaacaaagcacggcaagttttggatatttgcaaactaccatttaactttgcagattataatacacacttttttttccaagaggtatggtttgtataagaaaggaagtacatatatttaatacacaaacacggtttatgcacgcgacgtatttccagtgaaaaatcggcgattaataagttactcggagaaaattgatcgggaggctctaaatcttacgttgttcagcctgaataaaagtggaaaagtctatcttaagaaacgaagaatttttaggaaatgtgatacttacaatatgtaaattgcaaaacttatgcataaaacagcatttcttttttttaaaatatggatcattgaatacgcatcaccaccgcaactgcatgtgtaacgttaaattgcctttttcacgcgctaaaacaaagcctacgggttagaaaattaaaatttgccactagaaagttagtttagctgtaaggtttagagaatctatcttaaggaaaagttaatgtaatacctctgatacaacttttcttgggcagccgcgtgaaaaagcacgtttatttttctaaacgaatccagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagcccAAGT-GAAAAAT-CA-ATCTCAAGA------AA------------A-TT-----AAA-----------AC---ACA--A-----ACA-TAAAA------TTGT-T-----GAAAATGTGA--TACTTA------AAATAT----GCCT-A-CAACTAG-ATT----ATGC--A------GCC--------A-T-TAAA-----GC-------------AC----------CCAT-A--------TAC-------AATGCT-TTTTCCATGTG-CTA-AA--ACAAA-CAA---A-----G-CTA--GGTTGGAA--AG-TAA--TTTGCC-AC---TAA-A-AAGTT--AGCTGA-C-T----CAAA--GGCTT-GTGCATGAAT-AT-TTTTAAGGAAA----T-GTTAAT----GTGAGA--CATATTG-AAATAAC-TTTTCTT---GAACATAAATAATGAGAC-A-GTG-ACCAGC--ACTTTctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|11 : g-TACCG-T-AT-TTTGCCG-AAT-ATG------------ATATGCAC-TTTTT-TTC-AAGAATATT--TT----GGCCAA-TGA--A-A--GG-AGTGTGGAAAAT---ACA--CCA-----CA---ATAGAATT-----TA-G---ACC--CCTAT--TTTTTAA-GACG-AAAATT-GGCAGTTTAGT---ATTG-Ta
gi|12 : AA-TACCG-T-AC-TTTGTAG-AAT-GTACTAGTAGTGTAAATACACAC-CTTTT-T--CAAGAATATT--TT----GAC--A-TGAGAA-----------------AT---ATA--GCA-----CA---ATAGG--TTTAAATATG---ACT--GA-GTTCTTTTCCA-G-GT-AAAATattatgagccatattctggaatttgatgctgttaaactttgatttcagattctgaataagaattagtataatattgcctaacattgattgtgggtaaatatgattacctgatgttacaagctat
gi|13 : tgcagacattgaaagtttagAGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA--CACGAGACC-CTGTGGACCAAAA-CCCACACTTTAGCATGGGCCTAGCAA-A-ATG--ACGG-----ATTTG-AAGT-TGCGA-TTTC-TTTGCCAC-C-CTTGGAATTCG-AG------AGCCC-------TC---CA-TGT--AACACGGT-GTGTCTA---TGGA-ttttaaatcgacaatgaatacaattaaatcgtttttactgtctcagtcttcattattactgta
gi|14 : acttctgtaataGCTTTAGCGTGGGACTAGAAA-A-AAG--TCGG-TGCATTT-A-ATGT-TAAGA-TTTC-TGCGCCAG-T-CTT-CAATCCA-AT------TGTCC-------TC---CG-TGC-GAANNNNNN-NNNNNNN---NNNN-NNN-----------NNNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNCCTCG-GAGTGACGCAGTGTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGA------ATAAATTTT-TTC-A-TTAAA
gi|15 : AATATTGAAATAGA-AAAATAAGTTT-------TTGCATA-TACCA-T-AA-TTTGCCA-AAT-ATA------------ATGTGCAC-TTTCTATTTCAAGATTTTT--TT----G-C--A-TGAGAA-A--GG-GGTGTGTATTAT---ATA--CCA-----CA---AT-GG--T-----TATG---AACAAAT-TT--TTTTCCA-G--G-TAAATT-GGCAG-TGAAT---A
gi|16 : gagtgacatgcttgagtAATAT----GAAT-A-T-----GTAATCACCACAC--ATC----ACC--------A-AGCATACT---GCCAAATGTATAAACAT----------GTGT-A-C-------AA-------AAAGCC-TTTTC-AC-CA--TATGG--A---A-TAAGCAA-----TGCTA--AGTTAGAA--A--AAAAACTTGCC-ACCACTAG-A-AAGTT--AGT
gi|17 : GCTGA-TC-CT--GA--ATTTTGT-CC--GATTTTG-TT-AAATA-GCCCTCAAGTGTAAA-TACTTTTTGATAGACATGTACATGTATT--TGA---GA-A--AATAACC--CA-T-G---CAAAG-AA-TGTT---TGAGACCTGATAT----C-G-CACAT-
gi|18 : --CAAATGTCCTATA---ATTCACC-TGCGATTTTTTT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTGGATTTCCCCCACA---GGGGAGGGGGGCGCCGAATA-TGATTTTT-TTTTT-C-T-TTG-GTTG-Gcgctg
gi|19 : tcCGCTTG-CCACTATGATGATCT-GT-C-TGGATTT-G-TTAAAATA--CCTCTAAAGGAGAA-AACTTTTTACT-TTCAT-CATATGTA-----GAGAGAG-A--AAAAA-CATCATT-G---TAAAG-AACTGTC---AGAGA
gi|2 : ttgtgtacgctgAAAATTGACTTACCAAATCCACCATAAAATACAGTACAGGTCACGA---TTTT---ACCGCAAAATCCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGTGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTT-G-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GA-CACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGTCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ATGC-------------ACGG--TG-ACAGATGA------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAAT---CTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTA-GTTAG-GGA-TA-----T-TACA-TTTGAATTCCCCCACA---GGGAGAGGGGGCGCCA---A-TGATTTTT-TTTTTTCTT-TTG-GTTG-GAG-GGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGT--G-TTACCAGA-TATTTTCATCCGTTGTTA-----GGGGGTGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGC--AT--TTTT--CGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ATGGCAAGTTT--GGTATTTGTAAT-TACCA-TTAA-TTTGCCG-ATT-ATA------------ATACACAC-TTTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---ATA--CCA-----CA---ACAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGATTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTTAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ACCTCAAGA------AACA----AAG--AA-TTGTAGGTAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AACTTAT-TAT---AAAACAGCAA--TTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-TGCAAACT---GC-------------AT----------GTGT-ATT-T----TAA-------AAAGCC-TTTTC-ACGTGCCTA-AA--A---ACCAA---A-----GGCTACGGGTTAGAA--AT-TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTA-AGA---GAATCATATTTTAAGGAAA----A-GTTAAT----GTCAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AG-C-G-GTG-ACCAGC--ACGTTTTTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TT-AAATA-GCCCCTCAGTGTAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AATAA-C--CA-T-G---C--AG-AA-TGTT---TGAGACC-----T----CAG-TACAT-A-GGTGC
gi|20 : CGTTGC-CA-CT-TGA--ATTT-GT-CCTGGATTT---------TG-----CTCAAGGAAAA--ACCTTTTTATTTTTAT-CATATGTA-----GAGAGAA-A--AAAAA-T--CA-TTG---TAA-G-AA-TGTC---AGAGACC-----T----
gi|21 : tgtcaGCAGGTTT--TGGATCCATGAA-T------TGA-TTTACCGTAATTGTG------------ATGCGCAA-ATTTT-CATCAAGATTTTT--TT----GTC----TGTTAA-ATGGG-AGTTCGTATTAT---ATATGCCA-----C----ATAGG--T-----T-TA---ACC--AC-acaaaattgaggtgcc
gi|22 : tcG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCG-CAG-G-CTT-GAATCCA-AA------TGTCC-------T
gi|22 : A-TC---CAAATGTCCTATA---ATTCACC-TGCGAataattcacctgcga
gi|23 : ggatcaccgtggaccaaaagtccacgctttagcgtgggcctagaaaaaagtcggtgccttttgatgttacgatttctgcgcaggcttgaTTCCATA-TATTG-T-AT-TTTGCCA-AAA-ATA------------ATACACA--TTTTT-TTCCAAGAATTGT--TTGGG-GGC--AGTGAGAAGG--GG-GGTGGGTTTCAT---ATA--C
gi|24 : ttgCCTCTCAGGGAAAA-TACTTTTTATTATA-----------AT----GAGAGAA-A--AAAAA-T--CA-T-G---TATAA-AA-TGTC---AGAGACC--------------TACATGA-GGTGCt
gi|25 : acTTTTTTTTCTACT--CCAATGGC-GCTACCT-TCCGATGTGGAGGT-TCAATAT-GAAACAAc
gi|3 : --GTGG---TG-TAAAAG--TATACT---GGTGAG--GGT--G-TTACCAGA-TATTTTCTTCCGTTGTCATGTAGGGGG-TGGA----ATT-AAATTAT-AAAGT-----------------ATCCTCGCGC--AT--TTTTTC-GCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAA-AAG-ACGGCAAGTTT--GGTATTTTCAAA-TACCA-TTAA--TTGCCG-ATT-ATA------------ATAC-CAC--TTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---AT---CCA-----CA---ACAGG--T-----ATTG---ACC--A--GT--TTTTCCA-A-TG-AAAATCGGGCGATTAAAT---AATGTTTTCACT-CGGAG--AATT-GTC-GGAGGCTC--TTAATCT-AC--GTT-TTCA-CCTGAATAAAAGT-GAAAAGT-CTGATCTTAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATA--------AAAA---AACTTAT-TAT---GAAACAGCAATTTTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCAAACT---GC-------------AT----------GTGT-A-CGT----TAA-------AAAGCC-TTTAC-ACGTG-CT--AA--A---A-CAA---A------GCTACGGGTTAGAA--AT-TAAAATTTGCT-AC---TAGAA-AAGTT--AGTTTA-C-T----GTAA--GGTTTAAGA---GAATC-TATGTTAAGGAAA----A-GTTAAT----GTCAAAC-T---CTGAATACAAC-TTTTCTT---GGGC----------AGCC-G-GTG-ACCAGC--ACGTTTGTGTTTCTAAACCGAATC
gi|3 : CGCTGA-CC-CT-TGA---TTT-GT-CCTGGATTT-G-TT-AAATA-GCCC-TCAGTGTAAA-TACTTTTTAATATACATGTACATG-ATT--TGAGAGGA-A--AATAA-C--CA-T-G---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctgacccttgatttgtcctggatttgttaaatagccctcagtgtaaatactttttaatatacatgtacatgatttgagaggaaaataaccatg
gi|4 : gtggtgtaaaagtatactggtgagggtgttaccagatattttcttccgttgtcatgtagggggtggaattaaattataaagtatcctcgcgcattttttcgccgtgtaaagtgtcactccacttttttttttctactccaatggcgctactttccgatgtggaggttcaatatgaaaaagacggcaagtttggtattttcaaataccattaattgccgattataataccacttttttccaagagttgtttggtataagaagggagtacatattatatccacaacaggtattgaccagtttttccaatgaaaatcgggcgattaaataatgttttcactcggagaattgtcggaggctcttaatctacgttttcacctgaataaaagtgaaaagtctgatcttaagaaacgaagaattgtaggaaatgtgatacttacaataaaaaaacttattatgaaacagcaatttttttttaaatatggatatgaatacgcatcaccacgcaaactgcatgtgtacgttaaaaagcctttacacgtgctaaaacaaagctacgggttagaaattaaaatttgctactagaaaagttagtttactgtaaggtttaagagaatctatgttaaggaaaagttaatgtcaaactctgaatacaacttttcttgggcagccggtgaccagcacgtttgtgtttctaaaccgaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACG-GATCACCGTGGACCAAAAGTCCACGCTTCAGCGTGGGCCTAGAAATA-AAGGTCCGG-TGCCTTTTG-ATGTCTACGA-TTTCTTGCGCCAGCGCCTT-GAATCTC-AA------TGTCC-------TTCCACG-TGC-GAACAAGTT-GTGTCCAGGGCGTA-GTGATCAAGTTTGCGCACGGTAGTGCACTGGTGGCTGCCCACGGA-TGA------------CA-CAGT--------GTG----------------------TCCCACGGAGTGACGCCAGTGTGTATCGCACGGGCTG-ACAGACGGCAAGATATAAAAATT-ATTAATTAAAAATA-TCA--CAAA--TCATATAAACATTCACCTTGCG-TTTT-TT---AGATTTTGGAAGAG-GTGTATTTTGCGTTAGCGGA-CATGTATT-TCCA-TTTGATTTTCCCCACA---AGGGGTGAGGGCGCCG---ACTGATTTTTCTTTTT-CTTCTTGAGTTG-GAGAGGTAGATTCATTGGATATG-TAAA-GCTCATACTAGAGGTGAGCCAGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGATGATATTCAAATTATAAAAGTCTGTGTAAAAACCTA-TAT-CTCGCGGCAACAGTTTTTACGTC
gi|5 : AAA-TACCG-T-AA-TTTGTCG-AAT-ATA------------ATACAAAC-TTTTT-T--CAAGATTTTT--TTTTGAGGC--A-TGAGAT-A--GG-GGTGCATATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AA-TTC-TTTTCGATG-TA-AAAATC-GGCGG-TGAATACAAATG-TTTTACT-CGGAG--A--C-AT----AGTCTT--CACATTTCAT--GTTGCTCA-CTTATTTTAAAGT-GTAAAAT-CT-ATGCCAAGAAAATCCAACG----AAATTAA-TAATTACAAATATGA-----CACT-TACG--ATATGTAAA-TGAAA---AGGTCG---AT----------CAA--------------AAATAT----TCAT-A-T---------------------------ACC--------G-CGC-TATTAACGC-------------AT----------GTGT-A-C-------AAATGACT-AAAG---TTTTC---------A-AT--A---A-CGA---A--------TCCAGATTGGAA--A---ATAATTTGCC-CC---CAA-A-AAGTT--TGTTTA-C-T----ATAA--GTTTT-A-A---GAAT-AGGTTTTATGGAAATGTTA-ATTAAT----GT-AAA--T---TT---TTGAAT-TTTTTTTCTAAGGC----------AGCC-G-GCG-AACAtctga
gi|6 : acacatttaaaataccgttta-TACCA-T-AA-TTTGCCG-AAT-ATA------------ATATGCAC-TTTTT-TTTAAAGAAGTTT--CT----GGT--A-TGAGAA-A--GG-GGTGCATATTGT---GTA--CTACAAATCA---ATACA--T-----TATG---ACT--TT-TT--TTTTCAG-G-TGAAAAATC--GTGGTTAAGT---TATA-TTTCACTCCAGAG--AA---AT----AGACTTCATACATACCACAGGCTTTT---TCTCAA--------GAAAATTACT-A---CAAAA------AAAT----AA---AA-TTGTA-GAAATGTAA-----TCCT-TACAATATATGTAAA-TAATC---AAATTAT-CAT---GAAACAACCA--ATC---------AAAAATTGTAGGAT-C-T-----G-AAT----ATTC--ATC----ACA--------A-CGTATACT---GC----------------------------C-A-T-T--------------AATGCA-CTTTG-A-------A-TA--A---A-CAA---A------GCT--GAGTTGGAA--A---ATAATTTACC-AC---TAA-A-AAGTA--AG---G-C-T----GTAA--GGTTT-AG----GAAT-ATCTTTTAAAGAAA-------TTA---------------------------------TCTT---GGGCAAAAGAAAT-AGGC-A-GCA-ACCAGC--ACGTT
gi|7 : atcaaaattgtcttacAT----ACGC--A-C----ACA--------A--ACATACT---GC-------------AT-------------T-G-T-C----TAT-------A---CC-TCTTC-ATGTG-CTA-AATAA---A-CAA---A-----GCCTATGGTCTAGAATAA--TAATATTTGCG------TAG-ATAAGTT--GCTTTA-TAT----GTAAAAGAATT-A-A---GAAT--TCTTTTAAGGAAA------GTTAAT----GTTAAA--CTA-CTG-ATGCAAT-TTATCTT---GGGC-----------GCCGG-GTG-ACCGGCAAATTTTTTTGTTTTT--A-CGAATTCAat
gi|8 : acttatgcacggccattttctctcatttttggaataaggtgggatactggcagattttgaaggacgT-TGA---TTT-GTACCTGGATTT-GTTT-AAATATTCCTCTCAA-GAAAT-TACTTTTTATTTT---------TTTATTTGTGAGAGGACAATAAAAA-T--CA-T-GGTATAAAG-AA-TGTC---AGAGCCC-----T----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta
gi|9 : ctgtgtacgctagcttagccatggaGA------AACGCATTAAA--AA-TTGTAGGAAAT-TAAGTACTTACTGTACA--ATAT-TAAA-TAAAATAAAGATTAT-TATCTTGAA-CGGCAA--TTTTTTT-----AACTTTT---GGAT-A-TTG---A-AAT----ACTCTTATCTGACACCCATCAACAA-CACACACT---GCC------------ATTTTCTAAAAAGCAT-A-C-TGATGTAGTCTACCTGAAGCT-CTTT--ATCCG-CTT-AA--A---A-TAA---ACTCAAAGCTATGT-TTAGGA--A---AAAATTTGCCCGC---TAG-A-ACGTTTTAGCTTA-T-TTGGTGTAA--GGATT-A-A---GAAT-ATCTTTTAAGGAAA----AAGTTAATTGATATAAAC--T---CGA-ATACAACCTTTTCTT---GGGC----------CGCC-G-Gaacaaaatgagggtgctttcttcaatcagtaagcgactgacgtacgttatattccatttcatgaaaaggttgagaggaatgggtatgagtttgtgtttttatttttcttgttcaaagaatgttttttacggactgctggcgtctaagaataattaaacagatcaagtatccctcaatttttgacaattaaacgatggccattat
blockSeqs : T T C A A A . . C TC A C T . GTC . A T . C . T CGC G . . TTCCA . . . GGG . ATCAAGTTTGC GTGCACTGGTGGC N CACAGTGTGTCCCACGGAGTGACGCCAGTGTGTATCGC GC . CAAGAT T A T . A TGT AAC T T . . G T C C . TGTATT . T . C AATA T C T T C A . A CA ATA . A CT AGA CC C . . T A G TGTAG G TGAT T C A T GTA . C CAACAG TAC . . . . . . T T . G G . G T . T T CTAGTAGTGTAA G . A T A . TTGA CA G ATG A . TG CAAAT . AT TTAAA . GAGTTC T ACG G T T ACA T C AATTATC CA T AG G . TA . A G T AAATCC CGCATTAAA . G G G GTACT G AT TG . TAA C . CTTG A TTTTTTTTT TGTA . . AACTAG CACC TT TCTGAC CATCAACA T A AAC CATTTTCTAAAAAGCATACTGATGTAGTCTACCT T . CATGTGCTA TA CAA C GCA CTCAAAG C TA GT CG CAC A T TT . A TGGT AA A TGCAT CA A TGTTA TGAT G CATATTG C CTA ATAAATAATGA A G . T . AA T A C . A A TGA T A T TG A TT T T T A AC GT TTTG C AT T CAT T T GTATA A . C . TGATATCG GA
blockSeqs : . . T . . A . C T . . . . C . . . TC . . . . . . . G NNNNNNNNNCCTCGGAGTGACGCAGTGTGTACGC . . . C . T . A TGT . . . . . . . . . . T . A . C AC T . . T . . . . . . . . . . . . . . T T G . . . T . . C . . C AT TC . . . . . . . C . T G . G T . . . . A . . T A . GGG . . GG G . . . . . . . AAATTT . TGA . T G . . . AATTGTC . C . G . TA . . . C . CGAAATT . G G G . . . TG . . C . G A TTTTTTT T . . TGA . . TC . A T . CAAATGTATAAACATGTGTACAA A . ACGTGCCTA . . . . TG C . TT A . . . . . . . . . GA A A AA . C CTCTGA . . AAAAGAAATA C . . T . . G A . . . . A . . T GT . G G A A A TC GT TT . . A CC . . CA A . . . TCAG A
blockSeqs : . T . . T . C T . . . . T . . . TC . . . . . . . . CGCAGTGTGTATGC . . . A . . . . T . . . . . . . . . . T . T . C A T . . . . . . . . . . . . . . . . T T G . . . T . . . . . . AT C . . . . . C . G A . A T . . . . G . . T T . . . . A A . . . . . . . CCTAT . GT . T A . . . ACAT . C . T . TT . . . T . CAAAG . A A A . . . TG . . G . A A TTTTTTT . . . GT . . TC . T A . ATGTGTACAAATGACT A . ATGTGCTA . . . . GG C . TT A . . . . . . . . . GA C G T . C CTACTG . . A C . . T . . T . . . . . A . . T G . G T T T T AC GT TT . . T C . . TA A . . . .
blockSeqs : . T . . T . C . . . . . G . . . TC . . . . . T . . . . . C . A . . . . . A . . A G . . . . A A . . . . . . . AATTC . TG . T A . . . AAAT . . . . . . . . . T . CGAAG . G G G . . . T . . A . G A TACTTA . . . G . . TC . C A . ATGTGTATTTTAA A . ATCCGCTT . . . . GC T . A A . . . . . . . . . A A C A . T TCTG . . A G . . C . . . . . A . . T G . G G A T A TT C TT . . A T . . TA A . . .
blockSeqs : . . T . . . . . . . G . . . T . G . . . . . G . . T T . . . . G G . . . . . . . ACGT . TG . . G . . . . . . . ATAA . G . . . . . . . . A . G . ATC . . . G . . TC . C T . ATGTGTACGTTAA A . ACCATAT . . . . G T . T A . . . . . . . . . G A C A . A TCGA . . A C . . C . . . . . . . . T G . . G A T A AC C T . . A T . . TA A . . .
blockSeqs : . A . . . . . A . . T A . . . . G A . . . . . . . TTTT . TA . . A . . . . . . . . . . . . . . . . . . . . . G . . C . C T . ACCCATATAC T . ACGTGCT . . . . G . . . C . . . . . . . . . A A C . . . TTT . . C C . . T . . . . . . . . . T T T T A . . . . T C . . C . . . .
blockSeqs : . G . . . . . A . . T G . . . . A G . . . . . . . AGT . G . . . . . . . . C T . ATTGTCTAT A . AA . . . . G . . . A . . . . . . . . . A . . . . . . . . . . . . . A . . . . . . . A T . .
blockSeqs : . A . . . . . G . . . T . . . . A G . . . . . . . . . . . . C . CATT . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . .
blockSeqCons : T** ****** TC********** T** G** G* ** G* *** *** *** NNTTT**** TG** AACGT****** TTTTTTT******* C* ATGCGTACTTAA************************************* ACGTGCTA*** G****** T** A**** T* T*** ***
originalCons : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACC--AC-GT--TTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAG--AATT-ATC-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAA--TTCTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---GC-------------AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-ACGCG-CTA-AA--A---A-CAA---A-----GGCTACGGGTTAGAA--A--TAAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT-AGA---GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAA-C--CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
finalCons : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAGT--CGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCCTC----------CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAAT--CCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTTG--GTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GGG-GTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG---ACCNNTTT----TTTTCCA-GTG--AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAGAACGT------GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAGCAATTTTTTT-------AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------AC-GCANACT---GCATGCGTACTTAA-------------------------------------AAAGCC-TTTTCACGTGCTA---AA--A---A-CAA---AG------CTACGGGTTAGAA--AT--AAAATTTGCC-AC---TAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT-AA----GAATCATNTTTTAAGGAAA----A-GTTAAT----GTNAAA--T---CTG-ATACAAC-TTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAAT-ACTTTTTAATATACATGTACATGTATT--TGAGAGGA-A--AANAAT---CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 222 22 1 111 111 111111 222222222222 111 44444444444 5555555555555 777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 222222 11 1 1 111 2222 111 1 111 1 1 1 1 1 1 2222222 1 111 11111 1 1 1 1 1 11 111 1 1 11 111 11 22 1 1 22222 1 2222 1 1 111 1 222222 1 4444444 11 1 1 1 1 111 2 222222222222 1111 11111 11111 11111 1111 111 777777777777 11 11 111111 11111111111 11111 111 1111 22222222222222 1111 2222222 11111111 777777777777777777777777777777777777777777777777777 1111111111111111111111111111 222 1111 1111111 22 222222 1111 2222222222 44444444444 1 6666666666666666666666666666666666666666666666666666666666666666 111 1 11 1111 111 44444444444444 111
lowQualScore : 1 5 1 1 1 5 111 000 1 00 6 0 3 6 6 555 6 1 7 6 6 6 6 111 6 6 999999 222222222222 8 8 0 8 444 8 77777777777 5555555555555 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 0 888888 00 0 3 0 444 7777 444 8 0 0 777 0 0 0 0 0 0 6666666 0 9 777 0 2 88888 3 0 0 3 0 0 0 7 33 777 0 0 33 777 33 55 0 0 3 3 2 0 55555 0 1111 3 0 0 7 777 0 2 999999 888 3 3333333 33 0 0 0 8 8 0 0 666 0 1 4 44 0 4 4 4 000000000000 3 4 4 3 1 0 55 5555 55 4 9999 44 0 0 777 55 11111 777 66 11111 8 4 44444 5 2222 5 5 6 000 6 0 8 0 444444444444 11 0 6 11 5 8 11 6 6 6 1 666666 44444444444 5 3 3 3 44444 5 77 55 5 000 3 5 1111 1 0 5 88888888888888 5555 5 5 2222222 9999 0 66 999999 66666666 66 5 777 888888888888888888888888888888888888888888888888888 2 4 5555555555555555555555555555 66 4 4 7 0 66 999 777 55 4 4 66 5 5 0000 66 8888888 77 5 222222 0000 7 5555555555 5 888 22222222222 2 5 5 1 5 99 1 3 0 4444444444444444444444444444444444444444444444444444444444444444 6 6 5 222 5 5 5 888 1 33 6 1 55 0 3 55 99 0 0 3333 5 5 66 1 5 888 5 5 99999 1 5 5 000 66666666666666 444
lowQualScore : . . . . . . ... ... . .. . . . . . ... . . . . . . . ... . . ...... ............ . . . . ... . ........... ............. . ................................................................................. .. . ...... .. . . . ... .... ... . . . ... . . . . . . ....... . . ... . . ..... . . . . . . . . .. ... . . .. ... .. .. . . . . . . ..... . .... . . . . ... . . ...... ... . ....... .. . . . . . . . ... . . . .. . . . . ............ . . . . . . .. .... .. . .... .. . . ... .. ..... ... .. ..... . . ..... . .... . . . ... . . . . ............ .. . . .. . . .. . . . . ...... ........... . . . . ..... . .. .. . ... . . .... . . . .............. .... . . ....... .... . .. ...... ........ .. . ... ................................................... . . ............................ .. . . . . .. ... ... .. . . .. . . .... .. ....... .. . ...... .... . .......... . ... ........... . . . . . .. . . . ................................................................ . . . ... . . . ... . .. . . .. . . .. .. . . .... . . .. . . ... . . ..... . . . ... .............. ...
lowQualScore : 0 5 0 0 0 5 555 555 0 00 0 8 8 7 7 222 7 0 3 7 7 7 7 777 7 7 222222 444444444444 0 0 8 0 000 0 55555555555 0000000000000 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 0 888888 22 0 2 0 222 0000 000 0 8 0 555 0 0 0 0 0 0 0000000 0 8 555 2 5 55555 2 0 0 2 0 0 0 3 88 555 0 0 88 555 88 00 0 0 2 5 5 8 00000 0 2222 2 0 0 0 555 0 5 888888 222 3 3333333 88 0 0 0 0 2 0 2 000 6 0 0 55 4 0 0 0 555555555555 0 0 0 4 0 8 55 5555 55 0 9999 55 5 9 000 55 11111 888 11 11111 9 4 88888 0 1111 7 0 0 000 7 8 0 8 888888888888 00 6 4 00 0 0 88 7 7 7 7 444444 33333333333 7 0 0 0 33333 7 99 77 7 000 0 7 7777 4 3 7 33333333333333 6666 0 0 6666666 4444 1 11 666666 11111111 33 3 888 000000000000000000000000000000000000000000000000000 3 4 4444444444444444444444444444 11 4 4 4 1 11 777 888 22 4 4 11 0 0 6666 99 5555555 55 9 111111 6666 6 8888888888 0 888 00000000000 5 0 0 4 7 22 0 2 0 0000000000000000000000000000000000000000000000000000000000000000 7 7 7 999 7 7 0 666 4 66 1 0 44 5 6 00 55 2 1 2222 0 0 99 0 0 555 0 0 33333 4 7 7 000 55555555555555 333
consensus : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAATGTCCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG-AC-C-ANTTTTTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAGAAT------CGTCGGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAG-CAA--TTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---G-------------C-AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-AC---GCG-CTAAA--A---A------C--AAAG-C-TACGGGTTAGAA--A--TAAAATTTG---CC-ACTAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT----A--AGAATCATNTTTTAAGGAAA----A-GTTA----ATGTNAAA--T---CTG-ATACAA-CTTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAG-GA-A--AANA-A-C-CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
Reference ( family-5038 ) : AGAANTGGCTTANCANATCCACCATANAATACAGTACAGGCCACGAATATTTCCTGACCGNAAAA-CCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GAACACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGCCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGG------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAAT--CCTATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTTGATTTCCCCCACA---GGGGGGGGGGGCGCCG---A-TGATTTTT-TTTTT-CTT-TTG-GTTG-GAGAGGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGCCAAT--TTTTTCCGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ACGGCAAGTTT--GGTATTTGCAAA-TACCG-TTAA-TTTGCCG-AAT-ATA------------ATACGCAC-TTTTT-TTCCAAGANTTTT--TT----GGC--A-TGAGAA-A--GG-GGTGCGTATTAT---ATA--CCA-----CA---ATAGG--T-----TATG-AC-C-NNTTTTTTTCCA-G-TG-AAAATC-GGCGGTTAAAT---AATG-TTTCACT-CGGAGAA-------CGT-GGAGGCTC--TAAATCTCAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ATCTCAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AANTTAT-TAT---GAAACAG-CAA--TTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCANACT---G-------------C-AT----------GCGT-A-C-T----TAA-------AAAGCC-TTTTC-AC---GTG-CTAAA--A---A------C--AAAG-C-TACGGGTTAGAA--A--TAAAATTTG---CC-ACTAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTT----A--AGAATCATNTTTTAAGGAAA----A-GTTA----ATGTNAAA--T---CTG-ATACAA-CTTTTCTT---GGGC----------AGCC-G-GCG-ACCAGC--ACGTTTNTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGATTT-G-TT-AAATA-GCCCCTCAGTGNAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAG-GA-A--AANA-A-T-CA-T-G---CAAAG-AA-TGTC---AGAGACC-----T----C-G-TACAT-A-GGTGC
gi|1 : AA-CCACATGGTCACCGATGAACAAAAG-CCACGCTTTAGCGTGGGCCTAGAAA-ACAAG---CGGCTGCTCTTTGCATGT-TACGATTTTC-TGCGCCAG-G-CTT-GAATTCACAAATTTTTTGTCCCTTTTTTCC---CGTTGCGGAACACGGTCGTGTCCA---CGGAGGTG-----------GCACGGTG-------------TACCCACGGAGTGA------------CACCAGT--------GTGTCTCCGGAGGTGACGCAGTGTGT-----------ACGC-------------ACGG--TGCACAGACCG------ATAAAATTTCCTT-ATTTAAAAAATTCAACCAAAT---CTATA---ATTCACC-TGCGATCTT-TTATCAGATTTTGGGAAAGCGT-TA-TTTG-GTTAG-GGACTA-----TCTCCATTTTGA-TTCCCCCACAAGCGGGGGGGGGGGGG--A---A-TGA-ATTT-TTTTT-CTT-TTG-GTTGTCCGAGGAATATT--GTGG---TGTTAAA-G--TATACG---GATGAG--GGTCTGTTTACCAGATTATTT------GTT--------------TGGA----A-T-AAATCTT-AAAGTTTGT---AAAACCTACTATCCTCGCGCCAA---TTTCTCCGCCGTCTAACAGTGTCACATATTGATCCAACTTTTTTTTTCTACTCCCCAATGGCTGCTACTTCTCCGATGTGGGAGTATCAATAT-GAACAAAGCACGGCAAGTTTTGGATATTTGCAAACTACCATTTAACTTTGCAG-ATT-ATA------------ATACACACTTTTTT-TTCCAAGAGGTATGGTT----TGT--A-TAAGAA-A--GGAAGTACATA-TATTTAATA---CA-----CAAACACGGT--T-----TATGCACGC-GACGTATTTCCA-G-TGAAAAATC-GGCGATT-AAT---AA-G-TT--ACT-CGGAGAAAATTGATCG--GGAGGCTC--TAAATCTTAC--GTTGTTCAGCCTGAATAAAAGTGGAAAAGT-CT-ATCTTAAGA------AACG----AAG--AATTTTTAGGAAATGTGA-----TACT-TACA--ATATGTAAATTGCAA---AACTTATGCAT---AAAACAG-CAT--TTCTTTTTTTTAAAATAT----GGATCATT-----G-AAT----ACGC--ATC----ACC--------ACCGCA-ACT---G-------------C-AT----------GTGTAA-CGT----TAA-------ATTGCCTTTTTC-AC---GCG-CT-AA--A---A------C--AAAGCC-TACGGGTTAGAA--AATTAAAATTTG---CC-ACTAG-A-AAGTT--AGTTTAGC-T----GTAA--GGTTT----AG-AGAATC-TATCTTAAGGAAA----A-GTTA----ATGTAATACCT---CTG-ATACAA-CTTTTCTT---GGGC----------AGCC-GCGTGAAAAAGC--ACGTTTATTTTTCTAAA-CGAATCCA
gi|1 : CGCTGAACC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TTAAAATA-GCCCCTCAGTGTAAATTACTTTTTAATATACATGTACATGT-TT--TGAGAG-GA-A--AATA-A-CGCA-T-G---CCACGAAA-TGTTTGAAGA-ACC-----TTCTAT-GCTACAT-ACGGTGCgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagccccgctgaacccttgaatttgtcctggattgttaaaatagcccctcagtgtaaattactttttaatatacatgtacatgttttgagaggaaaataacgcatgccacgaaatgtttgaagaaccttctatgctacatacggtgcctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|10 : aaccacatggtcaccgatgaacaaaagccacgctttagcgtgggcctagaaaacaagcggctgctctttgcatgttacgattttctgcgccaggcttgaattcacaaattttttgtcccttttttcccgttgcggaacacggtcgtgtccacggaggtggcacggtgtacccacggagtgacaccagtgtgtctccggaggtgacgcagtgtgtacgcacggtgcacagaccgataaaatttccttatttaaaaaattcaaccaaatctataattcacctgcgatcttttatcagattttgggaaagcgttatttggttagggactatctccattttgattcccccacaagcgggggggggggggaatgaattttttttcttttggttgtccgaggaatattgtggtgttaaagtatacggatgagggtctgtttaccagattatttgtttggaataaatcttaaagtttgtaaaacctactatcctcgcgccaatttctccgccgtctaacagtgtcacatattgatccaactttttttttctactccccaatggctgctacttctccgatgtgggagtatcaatatgaacaaagcacggcaagttttggatatttgcaaactaccatttaactttgcagattataatacacacttttttttccaagaggtatggtttgtataagaaaggaagtacatatatttaatacacaaacacggtttatgcacgcgacgtatttccagtgaaaaatcggcgattaataagttactcggagaaaattgatcgggaggctctaaatcttacgttgttcagcctgaataaaagtggaaaagtctatcttaagaaacgaagaatttttaggaaatgtgatacttacaatatgtaaattgcaaaacttatgcataaaacagcatttcttttttttaaaatatggatcattgaatacgcatcaccaccgcaactgcatgtgtaacgttaaattgcctttttcacgcgctaaaacaaagcctacgggttagaaaattaaaatttgccactagaaagttagtttagctgtaaggtttagagaatctatcttaaggaaaagttaatgtaatacctctgatacaacttttcttgggcagccgcgtgaaaaagcacgtttatttttctaaacgaatccagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacgagaaagcccAAGT-GAAAAAT-CA-ATCTCAAGA------AA------------A-TT-----AAA-----------AC---ACA--A-----ACA-TAAAA------TTGT-T-----GAAAATG-TGA--TACTTA------AAATAT----GCCT-A-CAACTAG-ATT----ATGC--A------GCC--------A-T-TAAA-----G-------------C-AC----------CCAT-A--------TAC-------AATGCT-TTTTCCAT---GTG-CTAAA--ACAAA------C--AAAG-C-TA--GGTTGGAA--AG-TAA--TTTG---CC-ACTAA-A-AAGTT--AGCTGA-C-T----CAAA--GGCTTGTGCA--TGAAT-AT-TTTTAAGGAAA----T-GTTA----ATGTGAGA--CATATTG-AAATAA-CTTTTCTT---GAACATAAATAATGAGAC-A-GTG-ACCAGC--ACTTTctccttcctcagcaaagcgattatatatattaccaatcttcgtcaaaaaacaatttcagcaggatggcgtatggatttttcatttcaaagcattgttttttacagagatgagaactctctaagattgaaaagtaaaccgattgcgttactatcgcacattctttaagttcaacgaaggaaatcataaatctgctaacaactttcagtgcagcaaaatctcgtgctctgcgtgaaaattacattacctatacttggttaaaattaaagacgaccgtgtgcaaaatcgcggtacgtacttgttttagaattat
gi|11 : g-TACCG-T-AT-TTTGCCG-AAT-ATG------------ATATGCAC-TTTTT-TTC-AAGAATATT--TT----GGCCAA-TGA--A-A--GG-AGTGTGGAAAAT---ACA--CCA-----CA---ATAGAATT-----TA-G-AC-C-CCTATTTTTTAA-GACG-AAAATT-GGCAGTTTAGT---ATTG-Ta
gi|12 : AA-TACCG-T-AC-TTTGTAG-AAT-GTACTAGTAGTGTAAATACACAC-CTTTT-T--CAAGAATATT--TT----GAC--A-TGAGAA-----------------AT---ATA--GCA-----CA---ATAGG--TTTAAATATG-AC-TGAGTTCTTTTCCA-G-GT-AAAATattatgagccatattctggaatttgatgctgttaaactttgatttcagattctgaataagaattagtataatattgcctaacattgattgtgggtaaatatgattacctgatgttacaagctat
gi|13 : tgcagacattgaaagtttagAGAAATGGCT-AACACATTCATCATATA-TACAGTACAGGCCACAAATATTTCCTGATCGAAAAA--CACGAGACC-CTGTGGACCAAAA-CCCACACTTTAGCATGGGCCTAGCAA-A-ATG--ACGG-----ATTTG-AAGT-TGCGA-TTTC-TTTGCCAC-C-CTTGGAATTCG-AG------AGCCC-------TC---CA-TGT--AACACGGT-GTGTCTA---TGGA-ttttaaatcgacaatgaatacaattaaatcgtttttactgtctcagtcttcattattactgta
gi|14 : acttctgtaataGCTTTAGCGTGGGACTAGAAA-A-AAG--TCGG-TGCATTT-A-ATGT-TAAGA-TTTC-TGCGCCAG-T-CTT-CAATCCA-AT------TGTCC-------TC---CG-TGC-GAANNNNNN-NNNNNNN---NNNN-NNN-----------NNNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNCCTCG-GAGTGACGCAGTGTG----------------------T-----------ACGC-------------ACGG--TG-ACAGACGA------ATAAATTTT-TTC-A-TTAAA
gi|15 : AATATTGAAATAGA-AAAATAAGTTT-------TTGCATA-TACCA-T-AA-TTTGCCA-AAT-ATA------------ATGTGCAC-TTTCTATTTCAAGATTTTT--TT----G-C--A-TGAGAA-A--GG-GGTGTGTATTAT---ATA--CCA-----CA---AT-GG--T-----TATGAAC-A-AATTTTTTTCCA-G--G-TAAATT-GGCAG-TGAAT---A
gi|16 : gagtgacatgcttgagtAATAT----GAAT-A-T-----GTAATCACCACAC--ATC----ACC--------A-AGCATACT---GCCAAATGTATAAAC-AT----------GTGT-A-C-------AA-------AAAGCC-TTTTC-ACCATATG-GAATA--A---G------C--AATG-C-TA--AGTTAGAA--A--AAAAACTTGCCACC-ACTAG-A-AAGTT--AGT
gi|17 : GCTGA-TC-CT--GA--ATTTTGT-CC--GATTTTG-TT-AAATA-GCCCTCAAGTGTAAA-TACTTTTTGATAGACATGTACATGTATT--TGA----GA-A--AATA-ACC-CA-T-G---CAAAG-AA-TGTT---TGAGACCTGATAT----C-G-CACAT-
gi|18 : --CAAATGTCCTATA---ATTCACC-TGCGATTTTTTT---AGATTTTGGGAAAG-GT-TA-TTTG-GTTAG-GGA-TA-----T-TCCA-TTGGATTTCCCCCACA---GGGGAGGGGGGCGCCGAATA-TGATTTTT-TTTTT-C-T-TTG-GTTG-Gcgctg
gi|19 : tcCGCTTG-CCACTATGATGATCT-GT-C-TGGATTT-G-TTAAAATA--CCTCTAAAGGAGAA-AACTTTTTACT-TTCAT-CATATGTA-----GAGAGAGA-A--AAAACA-T-CATT-G---TAAAG-AACTGTC---AGAGA
gi|2 : ttgtgtacgctgAAAATTGACTTACCAAATCCACCATAAAATACAGTACAGGTCACGA---TTTT---ACCGCAAAATCCACG-GATCACCGTGGACCAAAAGTCCACGCTTTAGTGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTT-G-ATGT-TACGA-TTTC-TGCGCCAG-G-CTT-GAATCCA-AA------TGTCC-------TC---CG-TGC-GA-CACGGT-GTGTCCA---CGGA-GTG-----------GCACGGTG-------------TGTCCACGGAGTGA------------CG-CAGT--------GTG----------------------T-----------ATGC-------------ACGG--TG-ACAGATGA------ATAAAATTT-CTT-ATTTAAAATA-TCA--CAAAT--C-TATA---ATTCACC-TGCGATTTT-TT---AGATTTTGGGAAAG-GT-TA-TTTA-GTTAG-GGA-TA-----T-TACA-TTTGAATTCCCCCACA---GGGAGAGGGGGCGCCA---A-TGATTTTT-TTTTTTCTT-TTG-GTTG-GAG-GGAATATT--GTGG---TG-TAAA-G--TATACT---GGTGAG--GGT--G-TTACCAGA-TATTTTCATCCGTTGTTA-----GGGGGTGGA----ATT-AAATTAT-AAAGTTTGT---AAAACCTA-TATCCTCGCGC--AT--TTTT--CGCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAACAAG-ATGGCAAGTTT--GGTATTTGTAAT-TACCA-TTAA-TTTGCCG-ATT-ATA------------ATACACAC-TTTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---ATA--CCA-----CA---ACAGG--T-----TATG-AC-C-AC-GTTTTTCCA-G-TG-AAAATC-GGCGATTAAAT---AATG-TTTCACT-CGGAGAAT------TATCGGAGGCTC--TAAATCTTAC--GTTGTTCA-CCTGAATAAAAGT-GAAAAGT-CT-ACCTCAAGA------AACA----AAG--AA-TTGTAGGTAATGTGA-----TACT-TACA--ATATGTAAA-TAAAA---AACTTAT-TAT---AAAACAG-CAA--TTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-TGCAAACT---G-------------C-AT----------GTGT-ATT-T----TAA-------AAAGCC-TTTTC-AC---GTGCCTAAA--A---A------CCAAAGG-C-TACGGGTTAGAA--AT-TAAAATTTG---CC-ACTAG-A-AAGTT--AGTTTA-C-T----GTAA--GGTTA----AG-AGAATCATATTTTAAGGAAA----A-GTTA----ATGTCAAA--T---CTG-ATACAA-CTTTTCTT---GGGC----------AG-C-G-GTG-ACCAGC--ACGTTTTTGTTTCTAAA-CGAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGA-CC-CT-TGA--ATTT-GT-CCTGGA-TT-G-TT-AAATA-GCCCCTCAGTGTAAA-TACTTTTTAATATACATGTACATGTATT--TGAGAG-GA-A--AATA-A-C-CA-T-G---C--AG-AA-TGTT---TGAGACC-----T----CAG-TACAT-A-GGTGC
gi|20 : CGTTGC-CA-CT-TGA--ATTT-GT-CCTGGATTT---------TG-----CTCAAGGAAAA--ACCTTTTTATTTTTAT-CATATGTA-----GAGAG-AA-A--AAAA-A-T-CA-TTG---TAA-G-AA-TGTC---AGAGACC-----T----
gi|21 : tgtcaGCAGGTTT--TGGATCCATGAA-T------TGA-TTTACCGTAATTGTG------------ATGCGCAA-ATTTT-CATCAAGATTTTT--TT----GTC----TGTTAA-ATGGG-AGTTCGTATTAT---ATATGCCA-----C----ATAGG--T-----T-TA-AC-C-acaaaattgaggtgcc
gi|22 : tcG-GATCACCGTGGACCAAAAGTCCACGCTTTAGCGTGGGCCTAGAAA-A-AAG--TCGG-TGCCTTTTG-ATGT-TACGA-TTTC-TGCG-CAG-G-CTT-GAATCCA-AA------TGTCC-------Tac
gi|22 : A-TC---CAAATGTCCTATA---ATTCACC-TGCGAataattcacctgcga
gi|23 : ggatcaccgtggaccaaaagtccacgctttagcgtgggcctagaaaaaagtcggtgccttttgatgttacgatttctgcgcaggcttgaTTCCATA-TATTG-T-AT-TTTGCCA-AAA-ATA------------ATACACA--TTTTT-TTCCAAGAATTGT--TTGGG-GGC--AGTGAGAAGG--GG-GGTGGGTTTCAT---ATA--C
gi|24 : ttgCCTCTCAGGGAAAA-TACTTTTTATTATA-----------AT----GAGAG-AA-A--AAAA-A-T-CA-T-G---TATAA-AA-TGTC---AGAGACC--------------TACATGA-GGTGCt
gi|25 : acTTTTTTTTCTACT--CCAATGGC-GCTACCT-TCCGATGTGGAGGT-TCAATAT-GAAACAAc
gi|3 : --GTGG---TG-TAAAAG--TATACT---GGTGAG--GGT--G-TTACCAGA-TATTTTCTTCCGTTGTCATGTAGGGGG-TGGA----ATT-AAATTAT-AAAGT-----------------ATCCTCGCGC--AT--TTTTTC-GCCGTGTAA-AGTGTCAC-------TCCACTTTTTTTTTTCTACT--CCAATGGC-GCTACTT-TCCGATGTGGAGGT-TCAATAT-GAAA-AAG-ACGGCAAGTTT--GGTATTTTCAAA-TACCA-TTAA--TTGCCG-ATT-ATA------------ATAC-CAC--TTTT-TTCCAAGAGTTGT--TT----GGT--A-TAAGAA-G--GG-AGTACATATTAT---AT---CCA-----CA---ACAGG--T-----ATTG-AC-C-AG--TTTTTCCA-A-TG-AAAATCGGGCGATTAAAT---AATGTTTTCACT-CGGAGAAT------TGTCGGAGGCTC--TTAATCT-AC--GTT-TTCA-CCTGAATAAAAGT-GAAAAGT-CTGATCTTAAGA------AACG----AAG--AA-TTGTAGGAAATGTGA-----TACT-TACA--ATA--------AAAA---AACTTAT-TAT---GAAACAG-CAATTTTTTTTT-----AAATAT----GGAT-A-T-----G-AAT----ACGC--ATC----ACC--------A-CGCAAACT---G-------------C-AT----------GTGT-A-CGT----TAA-------AAAGCC-TTTAC-AC---GTG-CT-AA--A---A------C--AAAG-C-TACGGGTTAGAA--AT-TAAAATTTG---CT-ACTAGAA-AAGTT--AGTTTA-C-T----GTAA--GGTTT----AAGAGAATC-TATGTTAAGGAAA----A-GTTA----ATGTCAAAC-T---CTGAATACAA-CTTTTCTT---GGGC----------AGCC-G-GTG-ACCAGC--ACGTTTGTGTTTCTAAACCGAATC
gi|3 : CGCTGA-CC-CT-TGA---TTT-GT-CCTGGATTT-G-TT-AAATA-GCCC-TCAGTGTAAA-TACTTTTTAATATACATGTACATG-ATT--TGAGAG-GA-A--AATA-A-C-CA-T-G---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctgacccttgatttgtcctggatttgttaaatagccctcagtgtaaatactttttaatatacatgtacatgatttgagaggaaaataaccatg
gi|4 : gtggtgtaaaagtatactggtgagggtgttaccagatattttcttccgttgtcatgtagggggtggaattaaattataaagtatcctcgcgcattttttcgccgtgtaaagtgtcactccacttttttttttctactccaatggcgctactttccgatgtggaggttcaatatgaaaaagacggcaagtttggtattttcaaataccattaattgccgattataataccacttttttccaagagttgtttggtataagaagggagtacatattatatccacaacaggtattgaccagtttttccaatgaaaatcgggcgattaaataatgttttcactcggagaattgtcggaggctcttaatctacgttttcacctgaataaaagtgaaaagtctgatcttaagaaacgaagaattgtaggaaatgtgatacttacaataaaaaaacttattatgaaacagcaatttttttttaaatatggatatgaatacgcatcaccacgcaaactgcatgtgtacgttaaaaagcctttacacgtgctaaaacaaagctacgggttagaaattaaaatttgctactagaaaagttagtttactgtaaggtttaagagaatctatgttaaggaaaagttaatgtcaaactctgaatacaacttttcttgggcagccggtgaccagcacgtttgtgtttctaaaccgaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACG-GATCACCGTGGACCAAAAGTCCACGCTTCAGCGTGGGCCTAGAAATA-AAGGTCCGG-TGCCTTTTG-ATGTCTACGA-TTTCTTGCGCCAGCGCCTT-GAATCTC-AA------TGTCC-------TTCCACG-TGC-GAACAAGTT-GTGTCCAGGGCGTA-GTGATCAAGTTTGCGCACGGTAGTGCACTGGTGGCTGCCCACGGA-TGA------------CA-CAGT--------GTG----------------------TCCCACGGAGTGACGCCAGTGTGTATCGCACGGGCTG-ACAGACGGCAAGATATAAAAATT-ATTAATTAAAAATA-TCA--CAAAT--CATATAAACATTCACCTTGCG-TTTT-TT---AGATTTTGGAAGAG-GTGTATTTTGCGTTAGCGGA-CATGTATT-TCCA-TTTGATTTTCCCCACA---AGGGGTGAGGGCGCCG---ACTGATTTTTCTTTTT-CTTCTTGAGTTG-GAGAGGTAGATTCATTGGATATG-TAAA-GCTCATACTAGAGGTGAGCCAGTC-G-TTACCAGA-TATTTTCTTCCGTTGTTA-----GGGG-TGGATGATATTCAAATTATAAAAGTCTGTGTAAAAACCTA-TAT-CTCGCGGCAACAGTTTTTACGTC
gi|5 : AAA-TACCG-T-AA-TTTGTCG-AAT-ATA------------ATACAAAC-TTTTT-T--CAAGATTTTT--TTTTGAGGC--A-TGAGAT-A--GG-GGTGCATATTAT---ATA--CCA-----CA---ATAGG--T-----TATG-AC-C-AATTCTTTTCGATG-TA-AAAATC-GGCGG-TGAATACAAATG-TTTTACT-CGGAG-A-------CAT---AGTCTT--CACATTTCAT--GTTGCTCA-CTTATTTTAAAGT-GTAAAAT-CT-ATGCCAAGAAAATCCAACG----AAATTAA-TAATTACAAATATGA-----CACT-TACG--ATATGTAAA-TGAAA---AGGTCG---AT-----------CAA--------------AAATAT----TCAT-A-T---------------------------ACC--------G-CGC-TATTAACG-------------C-AT----------GTGT-A-C-------AAATGACT-AAAG---TTTTC------------AAT--A---A------C--GAAT-C---CAGATTGGAA--A---ATAATTTG---CC-CCCAA-A-AAGTT--TGTTTA-C-T----ATAA--GTTTT----A--AGAAT-AGGTTTTATGGAAATGTTA-ATTA----ATGT-AAA--T---TT---TTGAA-TTTTTTTTCTAAGGC----------AGCC-G-GCG-AACAtctga
gi|6 : acacatttaaaataccgttta-TACCA-T-AA-TTTGCCG-AAT-ATA------------ATATGCAC-TTTTT-TTTAAAGAAGTTT--CT----GGT--A-TGAGAA-A--GG-GGTGCATATTGT---GTA--CTACAAATCA---ATACA--T-----TATG-A--C-TTTTTTTTTCAG-G-TGAAAAATC--GTGGTTAAGT---TATA-TTTCACTCCAGAGAA--------AT---AGACTTCATACATACCACAGGCTTTT---TCTCAA--------GAAAATTACT-A---CAAAA------AAAT----AA---AA-TTGTA-GAAATGTAA-----TCCT-TACAATATATGTAAA-TAATC---AAATTAT-CAT---GAAACAACCAA-------TC-----AAAAATTGTAGGAT-C-T-----G-AAT----ATTC--ATC----ACA--------A-CGTATACT---G-------------C----------------C-A-T-T--------------AATGCA-CTTTG-A----------ATA--A---A------C--AAAG-C-T--GAGTTGGAA--A---ATAATTTA---CC-ACTAA-A-AAGTA--AG---G-C-T----GTAA--GGTTT----A--GGAAT-ATCTTTTAAAGAAA-------TTA---------------------------------TCTT---GGGCAAAAGAAAT-AGGC-A-GCA-ACCAGC--ACGTT
gi|7 : atcaaaattgtcttacAT----ACGC--A-C----ACA--------A--ACATACT---G-------------C-AT-------------T-G-T-C----TAT-------A---CC-TCTTC-AT---GTG-CTAAATAA---A------C--AAAG-CCTATGGTCTAGAATAA--TAATATTTG---CG---TAG-ATAAGTT--GCTTTA-TAT----GTAAAAGAATT----A--AGAAT--TCTTTTAAGGAAA------GTTA----ATGTTAAA--CTA-CTG-ATGCAA-TTTATCTT---GGGC-----------GCCGG-GTG-ACCGGCAAATTTTTTTGTTTTT--A-CGAATTCAat
gi|8 : acttatgcacggccattttctctcatttttggaataaggtgggatactggcagattttgaaggacgT-TGA---TTT-GTACCTGGATTT-GTTT-AAATATTCCTCTCAA-GAAAT-TACTTTTTATTTT---------TTTATTTGTGAGAG-GACAATAAAA-A-T-CA-T-GGTATAAAG-AA-TGTC---AGAGCCC-----T----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta
gi|9 : ctgtgtacgctagcttagccatggaGA------AACGCATTAAA--AA-TTGTAGGAAAT-TAAGTACTTACTGTACA--ATAT-TAAA-TAAAATAAAGATTAT-TATCTTGAA-CGG-CAA--TTTTTTT-----AACTTTT---GGAT-A-TTG---A-AAT----ACTCTTATCTGACACCCATCAACAA-CACACACT---G-------------CCATTTTCTAAAAAGCAT-A-C-TGATGTAGTCTACCTGAAGCT-CTTT--AT---CCG-CTTAA--A---ATAAACTC--AAAG-C-TATGT-TTAGGA--A---AAAATTTG---CCCGCTAG-A-ACGTTTTAGCTTA-T-TTGGTGTAA--GGATT----A--AGAAT-ATCTTTTAAGGAAA----AAGTTAATTGATATAAAC--T---CGA-ATACAACCTTTTCTT---GGGC----------CGCC-G-Gaacaaaatgagggtgctttcttcaatcagtaagcgactgacgtacgttatattccatttcatgaaaaggttgagaggaatgggtatgagtttgtgtttttatttttcttgttcaaagaatgttttttacggactgctggcgtctaagaataattaaacagatcaagtatccctcaatttttgacaattaaacgatggccattat