lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555 88888888888888888888888888888888 55555555 1111111 1 00000000000000000000000000000000000000000000000000000000000000000 1111111 111 66666 111111111 2222222222 55555555555555555 3333 3333333 2 888888888888888888888888888888888888888888888888 44444 4444444444444444444444444 3333333 11 11111111 2 2
lowQualScore : 33 77 4 6666 4 55 22 22 2 4444 3 00000000000000000000000000000000000000000000000000000000000000000000000000000 7777 44 22 4 555 3 33 0 44 666 3 22222222222222222222222222222222 3 3 3 22222222 44 44 6666666 44 3 0 0 3 3 4 0 4 4 22222222222222222222222222222222222222222222222222222222222222222 3333333 3 7777 3 3 2 55 888 88888 555 222 4 8 4 00000 888888888 4 6 9999999999 99999999999999999 3 6666 0 4444444 0 2 2 999999999999999999999999999999999999999999999999 3 22222 8888888888888888888888888 5 5555555 33 5 00000000 0 0 7 55 5 55 4 2
lowQualScore : .. .. . .... . .. .. .. . .... . ............................................................................. .... .. .. . ... . .. . .. ... . ................................ . . . ........ .. .. ....... .. . . . . . . . . . ................................................................. ....... . .... . . . .. ... ..... ... ... . . . ..... ......... . . .......... ................. . .... . ....... . . . ................................................ . ..... ......................... . ....... .. . ........ . . . .. . .. . .
lowQualScore : 99 55 4 9999 1 22 99 99 0 5555 3 22222222222222222222222222222222222222222222222222222222222222222222222222222 4444 66 99 5 000 1 55 3 22 222 1 33333333333333333333333333333333 3 3 3 11111111 66 66 8888888 66 3 8 0 3 6 4 9 4 4 00000000000000000000000000000000000000000000000000000000000000000 3333333 6 7777 6 6 3 00 888 33333 888 555 0 9 3 22222 444444444 4 7 2222222222 33333333333333333 2 8888 8 2222222 0 5 5 888888888888888888888888888888888888888888888888 3 33333 1111111111111111111111111 0 9999999 44 0 44444444 1 4 2 55 7 55 0 9
consensus : AGGC--AAAA--AA-A----ATTAATN-T--T--TAGTT-TCTCAGGCA----CCGC-CGCA-TCTGTTCAAAAGGT----GTACCGCATCT----T------GAAAT----TTT-------C-------AA---T-AATATTT-AT-TT--ATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTATGTT-AT--------------AGA----TTT--A-GTAAAA-CTTT-CGGAAGGTT-TT---ATAATAA--AAT--TTT--A--A--G-TATATTTCT-ATCA-AAT-AAT-AGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTCACT--TNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTTTTTGTGAAAA----TTN--AAA-TAATTA-T----------CCC--------AT-------TGCTTACTCTAAT-ATAACTCCTAGTGC-AATTAATTGTNCNATTGCT---TACT-CTATA-TAAC-TCCAT-CTTCAGTNNACANNGGAAGAG-GAAAGATAACTC-GTATTACAGCCAAGTAAAA-AAAAAAA------------AAACCTGCC-TGCCCC--CATCTC-TTT-TCAAAA---AAAGTGCCTGAGAAAACTA--AACATTAAT--T-TTTTTTAGCC
Reference ( gi|1 ) : AGGC--AAAA--AA-A----ATTAATC-T--T--TAGTT-TCTCAGGCA----CCGC-CGCA-CCTGTTCAAAAGGTATATGTACCGCATCTAAAATAAAAAAAAAAT----TTT-------C-------AA---TGAATATTT-AT-TT--ATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTATGTT-AT--------------AGAA-AATTT--A-GTAAAA-CTTT-CGGAAGGTT-TTAAAATAATAA--AAT--TGT--A--A--G-TATATTTCT-ATCA-AAT-AAT-AGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTCACT--TTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTTTTTGTGAAAA----TTT--AAA-TAATTA-T----------CCC--------A--------TGCTTACTCT-GTAATAACTCCTGGTGCTAATTAAT-ATGCCATTGCCTTGTACTCCTGTACTAACATTCATACCTCTGTTAA--TTGGTAA---GAAGGATAACTCCGT-TTACAGCCAAGTAAAA-AAAAAAG------------AAACCTGCC-TGCCTC--CATCTC-TTT-TCAAAA---AAAGTGCCTGAGAAAACTA--AACATTAAT--T-TTATTTAGCC
gi|5 : AGGC--AAAA--AA-A----AAAAATT-T--T--TAGTT-TCTCAGGCA----CCGC-CGCA-TTTGTTCAAAAG------GTACCGCATCT-------AAAAAAAAT----TTT-----------------------ATATTT-AG-TT--ATTGATTT--ATG-T-AAATGAGG--TAACT-G-TTATGTT-AT--------------AGACTTTTTT--A-GTAACA-TTTT-CGGAAGGTT-------TAATAA--AAT--TTG--A--A--G-TATATTTCT-ATCA-AAT-AAT-AGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTCACT--TT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTTTTTGTGAAAA----TTG--AAA-TAA
gi|3 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--CAAC--AACA----ATTAATC-T--T--TAGTT-TCTTAGGCA----CTGC-TGCA-TCTG------AAGTA-AAGTACCTCAT------------AGAAATCCCCCCC-------C-------CC---CCAATTTTT-ATATT--ACC-ACTA--ATGCT-AAATGAGG--T---------------------------------AA-AATT--------------TT-CTGAAGGTT-T-----TAATAA--AATTCTTT--AATA--G-TATATTTTT------AAC-AAT--GT----ATGC-ACA--T------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTTATT--TAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TTTTTGTGAAAT----CTT--AA
gi|7 : ataAGGCCAAAAA--AA-A----ATTATTT-T--T--TAGTA-TCTCAGGCC----CCAC-TGCA-TGGGTT-AAAAG-----TGTACCGTAT-------------GAAAT----GT-----------------A---T---TATTT-GT-TT--AT--A-----ATG-T--------G--CAACT-C-TTATGTT-AT--------------AG-----------------A-CTTT-CTGAAGGCT-TT--AAT--------AT--TTT--------------TTTTT-ATCA-AAT-AAT-AATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TACACT--TAG-TAG-----T---tctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|11 : tgtaAGGC--AAAAAAAA-A----ATT-ATCGT--T--TAGTT-TCTC-GGCAATCCCCGC-CGCA-TCTGTTT----TGTAAAGGTACTGCATCT---AT----------T----TTT-------T-------TT---TTAATATTTAAT-CT--ATTGATTT--ATG-C-AAATGAGGGTCAACT-C-TTGTCTTAAT--------------AGAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|4 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttatttaAGGC--CAAA--AA-ACAAGAAGAATC-TGAT--TAGTCGTCT-AGGCA----CCGCACGCATCCTG--CAA---------GTAC-ACATCTAATTTT---------T----TTT-------T-------AA---AAAATTTTT-AC-TT--ATTGATTT--ATG-T-AA-TGAGG--TAACTGCGTTATGTT-ATTACTTTTGTTCAATAGA---------------AA-CTTT-CGGGAAGTGATTATAATAGTTGTTAAT--AGT--AT-ATTG-TCTATTTCT-ATCAGAAT-AAG-AGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTC-CTAATT--TAG-----T---ATG-AGT-AActt
gi|6 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAAA-AA-A----ATTATTT-T--T--TAGTA-TCTCAGGCC----CCAC-TGCA-TGGGTT-AAAAG-----TGTACCGTAT-------------GAAAT----GT-----------------A---T---TATTT-GT-TT--AT--A-----ATG-T--------G--CAACT-C-TTATGTT-AT--------------AG-----------------A-CTTT-CTGAAGGCT-TTAATAT---------T--TTT--------------TTTTT-ATCA-AAT--AT-AATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TACACT--TAG-TAG-----T---
gi|10 : ttgtaAGGC--CAAA--CA-AT---ATTAATC-A--A--CAGTT-TCCCAGGCA----CCCC-TGCA-TCTGTTGAAAAGGT-----TTTC-CAT------------GGAAGT----TTTTTTTTTCC-------AA---T--ACATGT-A------ATTGTTTG--ATG--------AAG--TAACT-G-TTATGTG-AT-----------------G-AATTTTAA-GT-AAA-TTTT-CCAAACCCT-T-----TAATAA--AAT--TGT--A--A--G-TATATTTTTAATCA-Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|20 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAAA-AA-A----ATTAATC-T--T--TAGTT-TTTCA-GC-----CCGC-C--------------------ATG--CCGCATATAAAAT--------TAT----TTT-------C--------A---T---TATTT-ATAAT--ATTTA-TT--AT--T-AAATG-GG--T-ACT-C-TTATCTT-AT--------------c
gi|21 : ttGGC--TAAA--AA-A----ATTA-TG-T--T--TACTG-TCTCAGGC
gi|14 : attacagccaagtaaaacagaaaaaaaacctgcctatcccaC--AAAA--AA-A----ATTAATC-A--G--TAGCT-TCTCAGGCC----CCAT-CACA-TTGGTTGAAAAG------GTGCCTCAT-------------GGAAT----TTT-------TTTTTTAGAACTCTCAATTCTT-AC-TT--GTTTATTC--ATG-T-AAATAAGG--TAACA-C-TTAGGTC-AT--------------AG-A-ATTTT--ATGCAAAA-
gi|2 : gagatgaatacaacctttatgc--AAAA--AATA----ATTA-TG-A--T--TAGTT-TCTCAGGCA----Ctaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|15 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaataattatcccattacccattgcttctccagtataactcctgtgcaatgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaa--AAAA--AA-A----ATTAATG-T--T--CAGTT-TCTCTGGCA----Ctag
gi|13 : aaaaactctgataattatcccattacccaatgtttactctatataactcctgtgaatgaaaaggagaaaatatcatcaaaaaggaaagataactcgtattacaaccagtataaaaaaaaaaactgcctgcctcatctctttttcaaaaaaa--AACA--AA-A----ATTA-TG-T--T--TAGTT-TCTCAGGCA----Ca
gi|22 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaaaataattatcccattgcttactctatataactccagtgcaatggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaa--AAAA--AA-A----ATTGATA-T--TAATAGTT-TCTCTGGCA----Cta
gi|23 : cctgcctcccccatcttttttttttaaaAAA--AA-A----ATTAATG-T--A--TAATT-TCTCAGGCA----Ca
gi|24 : cagcctgctctttttcaaaaaaaAAA--AA-A----ATTAATC-T--T--TAGTT-TCTCAGGCA----GTGC-CACA-TCa
gi|12 : ttaggtggAA--AA-A----ATTA-TG-T--T--TAGTT-TCTCAGGCA----C
gi|3 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaattaaaataattattcccattgcttactctatataactccagtgcaatgcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaa--AA-A----ATTAATG-C--T--TAGTT-TCTCA-GCA----Cgttt
gi|2 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaaAATC-T--T--TAGTT-TCTCAGGCA----CCGC-CGCA-TCTGTTCAAAAGGTA------CTGCATCTAATTTT---------T----TTT-------C-------A--------TATTT-AT-TT--ATTGATTTTTATG-T-AAATGAGG--TA-CT-T-TTATGTT-AT--------------AGAC-TTTTTA-A-GTAAAA-CTTT-TGGAAGGGT-TT----TGATAA--AAT--TTTTAA--A--GTTATATTTCT-ATCA-AAA-CAT-AGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTCAC---TTA-TAG-----T---A---AGT-AAT-TGAAGCT----TTTTTTGTGAAAA----TTG--AAA-TAATTA-T----------CCC--------ATTACCCATTGCTT-CTCCAGT-ATAACTCCT-GTGC-AAT
gi|16 : aaGTT-TCTCAGGCA----CCGC-TGCA-TTTGTTCAAAAGGTACA-GTACTGCATCTGAATT----------T----TTT-------T------------TAAATATTT-TT-TTTTATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTTTG--------------------------TTT--A-GTAAAA-CTTT-CGGAAGGTT-T-----TAACAA--AAT--TTT--A--A--G-TATATTTCT-ATCA-AAT-Agacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|19 : T----TTT-------A-------AA---T-ATTTTTT-TT-TT--ATTGATTT--ATG-TTAAATGAGG--TAACT-C-TT-TGTT-------------------------TT--A-GTAAAA-CTTTTCGGAAGGTT-TTTAAA--ACAA--AAT--TTT--A--A--G-TATATTTCTAATCA-AAT-
gi|9 : actgcatctgaatttttTG-T-AAATGAGG--TAACT-CATCA-GAT-GT--------------AG-A-TTTTT--ATGTACAA-CTTT-TGGCAGGTT-T-----TAATAA--AAT--TTC--A--A--G-TAAACTTTTAATCA-AAT-ATT-A--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TACACT--GAA-TAG-----TATAA---AGT-AATGTGAAGCTATTTTTTT------AAA----TAT--AAA-
gi|8 : attatgttagaccaaaaaaaaataaatttctcaagcatcgaggggtaccacatcgattatttttctccaaatcc--A-GTACAATCTAT-CGGAAGGTT-TTAA-----TAA--AAT--TTT--A--A--G--ATATTTCT-ATCA-AAT-GAT-AGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTCACT--TTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TTTTTGT-AAAA----CTTAAAAA-TAATTA-T----------CCC--------A--------T------TCTAGTAAT-GCTTAT----CTATTTAAT-GTGCAATaaca
gi|17 : TTT-TGTAAAATT-TTTAAA----AA--AAT--TTT--A--A--G-TATATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TCACT--TAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA--TTTCTCTGTGAAAA----TGA--AAATTAATTgaaaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|13 : ------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTCTCT--TTA-TAG-----T---A---TGT-AAT-TGTAGCTA----TTTTTGTGAAAA----TAA--AAA-TAATTA-T----------CCC--------AT-------TGCTTACTCT-AT-ATAACTCC-AGTGC-AAT
gi|12 : tgcaa------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC-CT--TTA-TAG-----T---A---TGT-ACTATGA----GCTATTTTTTGTGAAAA----TTA--AAA-TAATTATT----------CCC--------AT-------TGCTTACTCT-AT-ATAACTCC-AGTGC-AATggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|18 : ttgcaaat-TAG-----T---A---AGTGAAT-TGAAGCTA----TTTTTGTGAAAAAAAATAA--AAA-TAATTA-TGGTGATTTATCCC--------AT-------TGCTTAgcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|15 : AAAA----CTC--TGA-TAATTA-T----------CCCATTACCCAA--------TGTTTACTCT-AT-ATAACTCCTGtattactcgtgtgcatgaaaaaggaaagataatcatcagaaaggaaagataacttcatattacagtcaagtaaaaaaaa
gi|13 : aAAATAATTATCCCATTGCT---TACT-CTATA-TAAC-TCCA-------GTGCA--ATGGAAAAAGGAAAGATAACT-CGTATTACAGCCAAG-------AAACAA------------AAATCTGCC-T-------CATCTCTTTT-TTAAAC---AAAGTGCCTGAG-AAACTA--AACATAATT--T-TTGTTTAtgaatgaaaaggagaaaatatcatcaaaaaggaaagataactcgtattacaaccagtataaaaaaaaaaactgcctgcctcatctctttttcaaaaaaagtgccagagaaactgaacattaatttttttta
gi|3 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaTAAC--TCAT-CTTCAGTCAACATAGGAAAAG-GAAAGATAGCTC-GTATTGCAGCTAAGTAAAA-AGAAAAATAAATAAATAAAAAACC---C-TGCCTCACTATCTT-TTT-TTTTAA---A--GTGC-TGAGAAA-CTA--AGCATTAAT--T-TT
gi|15 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagaAG---GAAAGATAACTC-GTATTACAACCA-GTATAA-AAAAAAA------------AA--CTGCC-TGCCT---CATCTCTTTT-TCAAAA---AAAGTGCCAGAG-AAACTG--AACATTAAT--T-TTTTTTA
gi|18 : aaaaactctgataattatcccattacccaatgtttactctatataactcctgtgaatgaaaaggagaaaatatcatcaaaaAG---GAAAGATAACTTCATATTACAGTCAAGTAAAA-AAAA
gi|2 : tagtaagtgaattgaagctatttttgtgaaaaaaaataaaaataattatggtgatttatcccattgcttatattactcgtgtgcatgaaaaaggaaagataatcatcagaaAAGCATAACTC-GTATTACA-CCAA---------------------------AACCTGCCCTGCCCT--CATCTC-ATT-TCAAAA---AAAGTGCCTGAG-AAACTA--ATCA-TAATTAT-TTTTTTAG
gi|12 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaataattatcccattacccattgcttctccagtataactcctgtgcaatgacaaaggaaagataatcatcaaaaatgtgaAAAGATAACTC-GTATTACAGCCAAG------AAAACAA------------AAATCTTCC-T-------CATCTC-TTTATTAAAC---AAAGTGCCTGAG-AAACTA--AACA-TAAT--T-TT
gi|21 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaattaaaataattattcccattgcttactctatataactccagtgcaatgcgaaaaaaagga-TTACAGCCAAGTAAAACAGAAAAA------------AAACCTGCC-TATC-C--CA-----------------------GCCTGAGACAG-TA--AACA-TAAT--T-TT-TTTAGCCttgttt
gi|22 : aCCTGCC-T-CCCC--CATCTT-TTT-TT----TTTAAAGTGCCAGAG-AAACTATTAATATCAAT--T-TTTTTTA
gi|23 : GCC-TGC-------TCT--TTT-TCAAAA---AAAGTGCCTGAG-AAATTA--TACATTAAT--T-TT-TTTA
gi|3 : caAGTGCCTAAGAAA-CTA--AAGATTAAT--TGTTGTT
gi|24 : ataaggccTGCCTGAGAAA-CTA--AAGATTAAT--T-TT-TTTgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
Alignments
lowQualScore : 1111 11111111111111111111 999999999999999999999999999999999999999999999999 333333333333333333 333333 1111111 88888888888888888888888888888888888888888888888888888888888888888 11111 4444444444444444444444 3333 22222222222 7777777777777777777777777777777777777777777777777777 111111 222222222222 33333 1 1
lowQualScore : 55 6 3 0000 44 2 44 2 6666 2 333 88888888888888888888 222222222222222222222222222222222222222222222222 2 7777 33 4 33 2 66 33 2 5 2 999999999999999999 333 3 3 3 000000 2 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 11111 3 7777 3 3 555 666 77777 555 666 3 8 7777 4 666 4 1 6 4444444444444444444444 2222 5 66 5 1 66 11111111111 0 5 5 4 55 4 6666666666666666666666666666666666666666666666666666 3 3 7 3 333333 0 3 1 000000000000 4 4 55555 88 4 777 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... .................... ................................................ . .... .. . .. . .. .. . . . .................. ... . . . ...... . .. ..... .. . ....... . . . . . . ................................................................. ..... . .... . . ... ... ..... ... ... . . .... . ... . . . ...................... .... . .. . . .. ........... . . . . .. . .................................................... . . . . ...... . . . ............ . . ..... .. . ... .... . . .. . .. . .
lowQualScore : 00 7 3 4444 66 1 22 9 1111 9 777 99999999999999999999 777777777777777777777777777777777777777777777777 1 1111 33 4 99 9 11 99 9 7 9 999999999999999999 666 1 1 1 333333 3 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 77777 3 1111 3 3 888 222 77777 444 444 6 0 8888 0 000 4 4 7 0000000000000000000000 7777 0 33 0 0 77 77777777777 7 7 7 0 55 0 8888888888888888888888888888888888888888888888888888 6 6 3 6 111111 4 3 3 555555555555 4 0 55555 77 0 000 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATCT--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGG----T---GTACCGCATCT-----------GAA--ATTTT-------T-------AAT-----AATNTTTA-T-TTATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAG---A----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT---ATAATAAAATT--TT--A--A--GT-A-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGCA-TACTC------------AT---------------G---------T-----------TT------------AAG-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-TCCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTAATTATCCC-ATTGC-------T---TACT-CTA-TA-T--AAC-TCCAT-CCT-CAATGNACANAGG------------AA-GA--------------G-GAAAG-ATAACT-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-TC---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATNT--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGG----T---GTACCGCATCT----T------GAA--ATTTT-------C-------AAT-----AATATTTA-T-TTATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAG---A----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT---ATAATAAAATT--TT--A--A--GT-A-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGCA-TACTC------------AT---------------G---------T-----------TT------------AAG-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-NAAA-TAATTA-TCCCAT--------TGCTTACTCTAATATAACTCCTAGTGC-AATTAATTGTNCN-ATTGC-------T---TACT-CTA-TA-T--AAC-TCCAT-CTT-CAGTNNACANNGG------------AA-GA--------------G-GAAAG-ATAACT-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-TC---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATCT--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TGTTCA--AAAGGTATAT---GTACCGCATCTAAAATAAAAAAAAA--ATTTT-------C-------AATG----AATATTTA-T-TTATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGAAAA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TTAAAATAATAAAATT--GT--A--A--GT-A-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGCA-TACTC------------AT---------------G---------T-----------TT------------AAG-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-TCCCA---------TGCTTACTCTGTAATAACTCCTGGTGCTAATTAA-TATGCC-ATTGC-------CTTGTACTCCTG-TACT--AACATTCATACCT-CTGTTA--ATTGGT-----------AA-GA--------------A-G---G-ATAACTCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCC-TGCCTCCATCTC-TTT-TC---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATCA--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TGTTGA--AAAGG----T---TTTCCA----T----G------GAA--GTTTTTTTTTTCC-------AAT------ACATGTA-----ATTG-TTT---------GATGAAG--TAACT-G-TTATGTG-ATGA---A----TTTTA---A-GT--AAA-TTTT-CCAAACCCT-T-----TAATAAAATT--GT--A--A--GT-A-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTATCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAGG----T-----ACTGCATCT------------AT--TTTTT-------T-------TTT-----AATATTTAAT-CTATTGATTT--ATG-C-AAATGAGGGTCAACT-C-TTGTCTTAATAG---A----CTT-----c
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AAG-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATTCCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATAATTATTCCCATTGC-------T---TACT-CTA-TA-T--AAC-TCCAG--TG-CAATGCG-AAAAA------------AA-G---------------G-AAAAG-ATAACT-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCC-T-----CATCTC-TTTATT---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AAG-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA---TTT-T-TGTGAAAATA-AAAA-TAATTA-TCCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATAATTATCCC-ATTGC-------T---TACT-CTA-TA-T--AAC-TCCA--------GTGCA-ATGGA------------AA-AA--------------G-GAAAG-ATAACT-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCC-T-----CATCTCTTTT-TT---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATCA--GTAGCT-TCTCAGGCC----CCAT-CACATT-GGTTGA--AAAGG----T---G--CCTCAT-------------GGA--ATTTT-------TTTTTTAGAACTCTC-AATTCTTA-C-TTGTTTATTC--ATG-T-AAATAAGG--TAACA-C-TTAGGTC-ATAG---AAT--TTT-----ATGCA-AAA-
gi|15 : gagatgaatacaacctttatgcTAATTATCCC-ATTACCCAATGTT---TACT-CTA-TA-T--AAC-TCC---TGT-GAATGAAAAGGAGAAAATATCATCAAA-AA--------------G-GAAAG-ATAACT-CG-TATTACAACC-A-G---TATAA-AAAAAAA------------AA--C-TGCC-TG-CCTCATCTCTTTT-TC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAtaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|16 : aaaaactctgaGTT-TCTCAGGCA----CCGC-TGCATT-TGTTCA--AAAGG----TACAGTACTGCATCT-----------GAA--TTTTT-------TTTA----AAT-----ATTTTTT--T-TTATTGATTT--ATG-T-AAATGAGG--TAACT-C-TTTTG---------------TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-T-----TAACAAAATT--TT--A--A--GT-A-------TATTTCT-ATCA-AA-TA
gi|17 : TTT-TGTAAAATT-TT----TAAAAAAATT--TT--A--A--GT-A-------TATTT-T-ATCA-AATTAATTAATTT-GATGCA-TACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAAA-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : -TAG-----T---A---AGTGAAT-TGAAGCTA---TTT-TT-GTGAAAA---AAAA-TAA----------------------------AA-ATAATTA-TGGTG---ATT---TATCCC-ATTGC-------T---TA-------TA-T--TAC-TC-GT-GTG-CA-TGAAAAAGGA------------AA-GATAATCATCAGAAA-G-GAAAG-ATAACTTCA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCT-----------GAA--TTTTT-------TTTTA---AAT-----ATTTTTTT-T-TTATTGATTT--ATG-TTAAATGAGG--TAACT-C-TT-TGTT--------------TT-----A-GTA-AAA-CTTTTCGGAAGGTT-TTT--AAAACAAAATT--TT--A--A--GT-A-------TATTTCTAATCA-AA-T
gi|2 : AATCT--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGG----T-----ACTGCATCT-------------A--ATTTT-------T-------TTT-----CATATTTA-T-TTATTGATTTTTATG-T-AAATGAGG--TA-CT-T-TTATGTT-ATAG---A----CTTTTTA-A-GTA-AAA-CTTT-TGGAAGGGT-TT----TGATAAAATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTG-------T-GAAA------------AT--------TG--------AA-ATAATT----ATCC-CATTA-----CCC-ATTGC-------T---T-CT-CCAGTA-T--AAC-TCC-T-GTG-CAATG-ACAAAGG------------AAAGATAATCATCAAAAATGTGAAAGCATAACT-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCCTCATCTC-ATT-TC---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAG
gi|20 : aaAGGC--AAAAAAA-A----A--TTAATCT--TTAGTT-TTTCA-GC-----CCGC-C---------------------------ATGCCGCATAT----A------AAATTATTTT-------C--------AT-------TATTTA-TAATATTTA-TT--AT--T-AAATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCC-TA-TCCCA-----------------------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCC-T-CCCCCATCTT-TTT-TTTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCC-TGC-----TCT--TTT-TC---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATCT--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATCT--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--------AAG----TAAAGTACCTCATA------------GAA--ATCCC-------C-------CCCCCCCCAATTTTTA-TATTACC-ACTA--ATGCT-AAATGAGG--TAA----------------------------------------AA-TTTT-CTGAAGGTT-TT---A--ATAAAATTCTTT--A--ATAGT-A-------TATTTTT-A-----A-CAA-T-GT----ATGCA-CAT--------------AT---------------A---------T-----------TT------------AAG-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAATCT-TAA
gi|3 : ataTTGTGAA-AT--C-------T---TAAT-CTA-TA-TTAAA----CAT-------ATGTACA--GG------------AG-AA--------------G-GAAAG-ATAACT-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttA-T--AAC-TC-AT-CTT-CAGTCAACATAGG------------AA-AA--------------G-GAAAG-ATAGCT-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCC-T--CACTATCTT-TTT-TT---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATCTGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG--CA--A------------GTAC-ACATCT-------------A--ATTTT-------TTTTTA--AAA-----AATTTTTA-C-TTATTGATTT--ATG-T--AATGAGG--TAACTGCGTTATGTT-ATTA---C----TTTTGTTCA-ATAGAAA-CTTT-CGGGAAGTGATT---ATAAT--AGTTG-TT--AATA--GT-ATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATACA-TACTC------------AT---------------A---------TGTGTGCAAATGTT------------AGG-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATTT--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TGTTCA--AAAG---------GTACCGCATCTAAA-A------AAA--ATTTT------------------------ATATTTA-G-TTATTGATTT--ATG-T-AAATGAGG--TAACT-G-TTATGTT-ATAG---ACTTTTTT-----A-GTA-ACA-TTTT-CGGAAGGTT-------TAATAAAATT--TG--A--A--GT-A-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGCA-TACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AAG-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAAAAA-A----A--TTATTTT--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAG----T---GTACCGTA-------T------GAA--AT-------------------GT-----ATTATTTG-T-TTAT--A-----ATG-T--------G--CAACT-C-TTATGTT-ATAG------------------------A-CTTT-CTGAAGGCT-T-----TAAT---ATT--TT---------T-----------TTTTT-ATCA-AA-T-A-TAATTG-AATGCA-TACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC-AT-CCTGCAATCGACATAGA------------AA-GA--------------G--AAAG-ATAACT-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTTT--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAG----T---GTACCGTA-------T------GAA--AT-------------------GT-----ATTATTTG-T-TTAT--A-----ATG-T--------G--CAACT-C-TTATGTT-ATAG------------------------A-CTTT-CTGAAGGCT-T-----TAAT---ATT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGCA-TACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC-AT-CCTGCAATCGACATAGA------------AA-GA-----------------AAAG-ATAACT-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg-----A-GTA-CAATCTAT-CGGAAGGTT-TT---A--ATAAAATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGCA-TACTCA-----------AT---------------GTGTACAAATT-----------TT------------AAG-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-TCCCATTCTAGTAATGCTTA-TCT-ATTTAAT-----GTGC-AATGAAtgaa
gi|8 : A--------------G-GAAAG-ATAGCT-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T----------CATCTC-TTT-TC---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA--------ATT-TCTCAAGCA----TCG-------------------AGG----G---GTACCACATC--------------G--ATT--------------------------ATTTTTC-T-CCA---AATC--CTG-T-AAATGAGG--TAACT-CATCA-GAT-GTAG---ATT--TTT-----ATGTA-CAA-CTTT-TGGCAGGTT-T-----TAATAAAATT--TC--A--A--GT-A-------AACTTTTAATCA-AA-TAT-TA--TT-AATACA-TACTC------------ATTTAA-----------G---------T-----------TTTA----------AAGTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA
Alignments
lowQualScore : 1111 2222222222222222222 77777777777777777777777777777777777777777 333333333333333333 222222 1111111 88888888888888888888888888888888888888888888888888888888888888888 1111111 1111 2222222222222222222222 111 2222 11 111 777777777777777777777777777777777777777777 111111 222222222222 33333 1 1
lowQualScore : 55 3 3 0000 77 3 44 2 6666 2 333 9999999999999999999 1 88888888888888888888888888888888888888888 1 888888 777 888 2 2 66 33 2 5 2 888888888888888888 333 3 3 3 888888 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 1111111 3 7777 3 3 555 666 77777 555 666 3 8 7777 4 66 4 8888888888888888888888 55 999 77 44 1 4444 44 000 1 5 5 4 55 4 111111111111111111111111111111111111111111 3 3 3 3 3 333333 0 3 1 000000000000 4 4 00000 44 4 99999 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... ................... . ......................................... . ...... ... ... . . .. .. . . . .................. ... . . . ...... .. ..... .. . ....... . . . . . . ................................................................. ....... . .... . . ... ... ..... ... ... . . .... . .. . ...................... .. ... .. .. . .... .. ... . . . . .. . .......................................... . . . . . ...... . . . ............ . . ..... .. . ..... .... . . .. . .. . .
lowQualScore : 00 3 3 4444 99 1 22 9 1111 9 777 5555555555555555555 7 22222222222222222222222222222222222222222 0 666666 333 444 9 9 11 99 9 7 9 111111111111111111 666 1 1 1 555555 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 3333333 3 1111 3 3 888 222 77777 444 444 6 0 6666 0 66 4 2222222222222222222222 77 333 44 77 4 3333 00 000 4 7 7 0 55 0 555555555555555555555555555555555555555555 6 6 6 6 6 111111 4 3 3 555555555555 4 0 55555 77 0 99999 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTC--AAAAGG----T---GTACCGCATCT-----------GAAAT--TTTT--------AT-----AATNTTT---AT-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAG---A----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT---ATAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTC--AAAAGG----T---GTACCGCATCT-----------GAAAT--TTTT-------AAT-----AATNTTT---AT-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAG---A----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT---ATAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TGTTC--AAAAGGTATAT---GTACCGCATCTAAAATAAAAAAAAAAT--TTTC-------AATG----AATATTT---AT-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGAAAA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TTAAAATAATAAAATT--GT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-T-------CCCA---------TGCTTACTCTGTAATAACTCCTGGTGCTAATTA----A-TAT-GCCATTGCCTTGTACTCCTG-TACT--AACATT-CATACCT-C--TGTTAATTGGTAA-GA--------------A-G---G-ATAAC-TCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCC-TGCCTCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATC-A--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TGTTG--AAAAGG----T---TTTC--CAT-G-----------GAAGT--TTTT-----------------TTTTTCCAAT-ACATGTAA--TTGTTTG-----ATGAAG--TAACT-G-TTATGTG-ATGA---A----TTTTA---A-GT--AAA-TTTT-CCAAACCCT-T-----TAATAAAATT--GT--A--A--G-TA-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTA-TCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAG---------GTACTGCATCT------------ATTT--TTTT-------TTT-----AATATTTA--AT-CTAT-TGA--TT-TATG-C-AAATGAGGGTCAACT-C-TTGTCTTAATAG---A----CTT-----c
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATT-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATA----ATTATTCCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAG-TG--CAATGCG-AAAAA-AA-G---------------G-AAAAG-ATAAC-T-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCC-T-----CATCTC-TTTAT-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA----TT-TTTGTGAAAATA-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CA--------GTGCA-ATGGA-AA-AA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCC-T-----CATCTCTTTT-T-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATC-A--GTAGCT-TCTCAGGCC----CCAT-CACATT-GGTTG--AAAAGG----T---G--CCTCAT-------------GGAAT--TTTTTTTTTAGAACTCTC-AATTCTT---AC-TTGT-TTA--TT-CATG-T-AAATAAGG--TAACA-C-TTAGGTC-ATAG---AAT--TTT-----ATGCA-AAA-
gi|15 : gagatgaatacaacctttatgcAACTCT-GAT---AATTATCCCATTA--CCCAATGTT---TACT-CTA-TA-T--AAC-TC-C---TGT-GAATGAAAAGGAG-AA-AATATCATCAAAAA--G-GAAAG-ATAAC-T-CG-TATTACAACCA--G---TATAA-AAAAAAA------------AA--C-TGCC-TGCCTC-ATCTC-TTT-TTC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAtaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|16 : aaaGTT-TCTCAGGCA----CCGC-TGCATT-TGTTC--AAAAGG----TACAGTACTGCATCT-----------GAATT--TTTTTTA----AAT-----ATTTTTT----T-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTTTG---------------TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-T-----TAACAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TA
gi|17 : TTT-TGTAAAATT-TT----TAAAAAAATT--TT--A--A--G-TA-------TATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : -TAG-----T---A---AGTGAAT-TGAAGCTA----TT-TTTGTGAAAA---AAAA-TAA-----------------------------------AA-ATAATTAT-GGTG---AT-------TTAT-CCCATTGCT---------TA-TA-T--TAC-TCGTGT-GC----ATGAAAAAGGA-AA-GATAATCATCAGAAA-G-GAAAG-ATAACTT-CA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCT-----------GAATT--TTTTTTTA---AAT-----ATTTTTT---TT-TTAT-TGA--TT-TATG-TTAAATGAGG--TAACT-C-TT-TGTT--------------TT-----A-GTA-AAA-CTTTTCGGAAGGTT-TTT--AAAACAAAATT--TT--A--A--G-TA-------TATTTCTAATCA-AA-T
gi|2 : AATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTC--AAAAG---------GTACTGCATCT-------------AAT--TTTT-------TTT-----CATATTT---AT-TTAT-TGATTTT-TATG-T-AAATGAGG--T-ACT-T-TTATGTT-ATAG---A----CTTTTTA-A-GTA-AAA-CTTT-TGGAAGGGT-TT----TGATAAAATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTGTGAAAATT-GAAA-TAATTA-TCCCATTACCCAT--------TGCTT-CTCCAGTATAACTCC-TGTGC-AAT
gi|2 : aa-AATTATCCCATTA--CCCATTGCT---T-CT-CCAGTA-T--AAC-TC-C-T-GTG-CAATG-ACAAAGG-AAAGATAATCATCAAAAATGTGAAAGCATAAC-T-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCCTCATCTC-ATT-T-C---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAGgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|20 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaatAGGC--AAAAAAA-A----A--TTAATC-T--TTAGTT-TTTCA-GC-----CCGC-C---------------------------ATGCCGCATAT-----------AAAATTATTTT-------CAT-------TATTT---ATAATAT-TTA---T-TAT--T-AAATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCC-TA-TCCCA------------------------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCC-T-CCCCCATCTT-TTT-T-TTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCC-TGC-----TCT--TTT-T-C---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATC-T--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--------AAG----TAAAGTACCTCATA------------GAAAT--CCCC-------CCCCCCCCAATTTTT---ATATTAC-C-A--CT-AATGCT-AAATGAGG--TAA----------------------------------------AA-TTTT-CTGAAGGTT-TT---A--ATAAAATTCTTT--A--ATAG-TA-------TATTTTT-A-----A-CAA-T-GT----ATGC-ACAT--------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAA
gi|3 : ataCT---TAAT-CTA-TA-TTAAAC-----AT-------ATGTACA--GG-AG-AA--------------G-GAAAG-ATAAC-T-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatA-T--AAC-TC--AT-CTT-CAGTCAACATAGG-AA-AA--------------G-GAAAG-ATAGC-T-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCC-T--CACTATCTT-TTT-T-T---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATC-TGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG--C--AA------------GTAC-ACATCT-------------AAT--TTTTTTTTA--AAA-----AATTTTT---AC-TTAT-TGA--TT-TATG-T--AATGAGG--TAACTGCGTTATGTT-ATTA---C----TTTTGTTCA-ATAGAAA-CTTT-CGGGAAGTGATT---ATAAT--AGTTG-TT--AATA--G-TATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATT-T--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TGTTC--AAAAG---------GTACCGCATCTAAAA-------AAAAT--TTT-----------------ATATTT---AG-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-G-TTATGTT-ATAG---ACTTTTTT-----A-GTA-ACA-TTTT-CGGAAGGTT-------TAATAAAATT--TG--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAA-AA-A----AA-TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAG----T---GTACCGTAT-------------GAAAT--------------GT-----ATTATTT---GT-TTAT---A------ATG-T--------G--CAACT-C-TTATGTT-ATAG------------------------A-CTTT-CTGAAGGCT-T-----TAAT---ATT--TT----------T----------TTTTT-ATCA-AA-T-A-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA--------------G--AAAG-ATAAC-T-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAG----T---GTACCGTAT-------------GAAAT--------------GT-----ATTATTT---GT-TTAT---A------ATG-T--------G--CAACT-C-TTATGTT-ATAG---A----------------------CTTT-CTGAAGGCT-TT---A--ATA---TT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA-----------------AAAG-ATAAC-T-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg-----A-GTA-CAATCTAT-CGGAAGGTT-TT---A--ATAAAATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-T-------CCCATTCTAGTAATGCTTA-TCT-ATTTAAT-----GTGC-AATGA----Atgaa
gi|8 : A--------------G-GAAAG-ATAGC-T-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T----------CATCTC-TTT-T-C---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA---------ATT-TCTCAAGCA----TCG-------------------AGG----G---GTACCACATC--------------GAT--T-------------------ATTTTT---CT-CCA----A--AT-CCTG-T-AAATGAGG--TAACT-CATCA-GAT-GTAG---ATT--TTT-----ATGTA-CAA-CTTT-TGGCAGGTT-T-----TAATAAAATT--TC--A--A--G-TA-------AACTTTTAATCA-AA-TAT-TA--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA
Alignments
lowQualScore : 1111 2222222222222222 66666666666666666666666666666666666666666666666666 333333333333333 3333333 1111111 88888888888888888888888888888888888888888888888888888888888888888 1111111 1111 2222222222222222222222 111 2222 11 111 777777777777777777777777777777777777777777 111111 222222222222 33333 1 1
lowQualScore : 55 6 3 0000 44 3 44 2 6666 2 333 3333333333333333 1 11111111111111111111111111111111111111111111111111 2 7777777 777 888 2 2 66 33 2 5 2 999999999999999 333 3 3 3 0000000 2 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 1111111 3 7777 3 3 555 666 77777 555 666 3 8 2222 4 66 4 8888888888888888888888 55 999 77 44 1 4444 44 000 1 5 5 4 55 4 111111111111111111111111111111111111111111 3 3 3 3 3 333333 0 3 1 000000000000 4 4 00000 44 4 99999 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... ................ . .................................................. . ....... ... ... . . .. .. . . . ............... ... . . . ....... . .. ..... .. . ....... . . . . . . ................................................................. ....... . .... . . ... ... ..... ... ... . . .... . .. . ...................... .. ... .. .. . .... .. ... . . . . .. . .......................................... . . . . . ...... . . . ............ . . ..... .. . ..... .... . . .. . .. . .
lowQualScore : 00 7 3 4444 66 1 22 9 1111 9 777 8888888888888888 7 33333333333333333333333333333333333333333333333333 0 0000000 333 444 9 9 11 99 9 7 9 999999999999999 666 1 1 1 3333333 3 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 3333333 3 1111 3 3 888 222 77777 444 444 6 0 7777 0 66 4 2222222222222222222222 77 333 44 77 4 3333 00 000 4 7 7 0 55 0 555555555555555555555555555555555555555555 6 6 6 6 6 111111 4 3 3 555555555555 4 0 55555 77 0 99999 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT---GAAAT----------T-TTT-----NT------------AA---TNTTT---A-T-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT---GAAAT----------T-TTT-----AT------------AA---TNTTT---A-T-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TGTTCA--AAAGGTATATGTACCGCATCT---AAAATAAAAAAAAAAT-TTTCA---ATG-----------AA---TATTT---A-T-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGAAAA-TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-AAAATAATAAAATT--GT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-T-------CCCA---------TGCTTACTCTGTAATAACTCCTGGTGCTAATTA----A-TAT-GCCATTGCCTTGTACTCCTG-TACT--AACATT-CATACCT-C--TGTTAATTGGTAA-GA--------------A-G---G-ATAAC-TCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCC-TGCCTCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATC-A--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TGTTGA--AAAGGT----TTTC--CAT-G---GAAGT----------T-TTT------------------------TTTTTCCAA-T-ACATGTAA--TTGTTTG-----ATGAAG--TAACT-G-TTATGTG-ATGAA----TTTTA---A-GT--AAA-TTTT-CCAAACCCT-T------TAATAAAATT--GT--A--A--G-TA-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTA-TCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAGGT------ACTGCATCT---ATTTT----------T-TTT-----TT------------AA---TATTT---AAT-CTAT-TGA--TT-TATG-C-AAATGAGGGTCAACT-C-TTGTCTTAATAGA----CTT-----c
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATT-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATA----ATTATTCCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAG-TG--CAATGCG-AAAAA-AA-G---------------G-AAAAG-ATAAC-T-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCC-T-----CATCTC-TTTAT-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA---TTT-T-TGTGAAAATA-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CA--------GTGCA-ATGGA-AA-AA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCC-T-----CATCTCTTTT-T-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATC-A--GTAGCT-TCTCAGGCC----CCAT-CACATT-GGTTGA--AAAGGT----G--CCTCA--T---GGAAT----------T-TTT-----TTTTTAGAACTCTCAA---TTCTT---A-C-TTGT-TTA--TT-CATG-T-AAATAAGG--TAACA-C-TTAGGTC-ATAGAAT--TTT-----ATGCA-AAA-
gi|15 : gagatgaatacaacctttatgcAACTCT-GAT---AATTATCCCATTA--CCCAATGTT---TACT-CTA-TA-T--AAC-TC-C---TGT-GAATGAAAAGGAG-AA-AATATCATCAAAAA--G-GAAAG-ATAAC-T-CG-TATTACAACCA--G---TATAA-AAAAAAA------------AA--C-TGCC-TGCCTC-ATCTC-TTT-TTC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAtaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|16 : aaaGTT-TCTCAGGCA----CCGC-TGCATT-TGTTCA--AAAGGTACA-GTACTGCATCT---GAATT----------T-TTT-----TT------------AAATATTTTT---T-T-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-C-TTTTG------------TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-T------TAACAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TA
gi|17 : TTT-TGTAAAATT-TT-----TAAAAAAATT--TT--A--A--G-TA-------TATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : -TAG-----T---A---AGTGAAT-TGAAGCTA----TT-TTTGTGAAAA---AAAA-TAA-----------------------------------AA-ATAATTAT-GGTG---AT-------TTAT-CCCATTGCT---------TA-TA-T--TAC-TCGTGT-GC----ATGAAAAAGGA-AA-GATAATCATCAGAAA-G-GAAAG-ATAACTT-CA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCT---GAATT----------T-TTTTTTAAAT------------AT---TTTTT---T-T-TTAT-TGA--TT-TATG-TTAAATGAGG--TAACT-C-TT-TGTT-----------TT-----A-GTA-AAA-CTTTTCGGAAGGTT-TTTA---AAACAAAATT--TT--A--A--G-TA-------TATTTCTAATCA-AA-T
gi|2 : AATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAG------GTACTGCATCT----AATT----------T-TTT-----TT------------CA---TATTT---A-T-TTAT-TGATTTT-TATG-T-AAATGAGG--T-ACT-T-TTATGTT-ATAGA----CTTTTTA-A-GTA-AAA-CTTT-TGGAAGGGT-TT-----TGATAAAATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTGTGAAAATT-GAAA-TAATTA-TCCCATTACCCAT--------TGCTT-CTCCAGTATAACTCC-TGTGC-AAT
gi|2 : aa-AATTATCCCATTA--CCCATTGCT---T-CT-CCAGTA-T--AAC-TC-C-T-GTG-CAATG-ACAAAGG-AAAGATAATCATCAAAAATGTGAAAGCATAAC-T-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCCTCATCTC-ATT-T-C---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAGgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|20 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaatAGGC--AAAAAAA-A----A--TTAATC-T--TTAGTT-TTTCA-GC-----CCGC-C------------------------ATGCCGCATAT---AAAAT----------TATTT-----TC------------AT---TATTT---A-TAATAT-TTA---T-TAT--T-AAATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCC-TA-TCCCA------------------------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCC-T-CCCCCATCTT-TTT-T-TTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCC-TGC-----TCT--TTT-T-C---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATC-T--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--------AAGTAAA-GTACCTCATA----GAAAT----------C-CCC-----CCCCCCCC------AA---TTTTT---A-TATTAC-C-A--CT-AATGCT-AAATGAGG--TAA-------------------------------------AA-TTTT-CTGAAGGTT-TT-A-----ATAAAATTCTTT--A--ATAG-TA-------TATTTTT-A-----A-CAA-T-GT----ATGC-ACAT--------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAA
gi|3 : ataCT---TAAT-CTA-TA-TTAAAC-----AT-------ATGTACA--GG-AG-AA--------------G-GAAAG-ATAAC-T-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatA-T--AAC-TC--AT-CTT-CAGTCAACATAGG-AA-AA--------------G-GAAAG-ATAGC-T-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCC-T--CACTATCTT-TTT-T-T---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATC-TGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG--CA--A---------GTAC-ACATCT-----AAT----------T-TTT-----TTTTAAAA------AA---TTTTT---A-C-TTAT-TGA--TT-TATG-T--AATGAGG--TAACTGCGTTATGTT-ATTAC----TTTTGTTCA-ATAGAAA-CTTT-CGGGAAGTGATT-A---TAAT--AGTTG-TT--AATA--G-TATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATT-T--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TGTTCA--AAAG------GTACCGCATCTAAAAAAAA----------T-TTT-----AT------------A------TTT---A-G-TTAT-TGA--TT-TATG-T-AAATGAGG--TAACT-G-TTATGTT-ATAGACTTTTTT-----A-GTA-ACA-TTTT-CGGAAGGTT--------TAATAAAATT--TG--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAAAAA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T---GAAA---------------T-----GT------------AT---TATTT---G-T-TTAT---A------ATG-T--------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT----------T----------TTTTT-ATCA-AA-T-A-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA--------------G--AAAG-ATAAC-T-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T---GAAA---------------T-----GT------------AT---TATTT---G-T-TTAT---A------ATG-T--------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA-----------------AAAG-ATAAC-T-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg-----A-GTA-CAATCTAT-CGGAAGGTT-TT-A-----ATAAAATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-T-------CCCATTCTAGTAATGCTTA-TCT-ATTTAAT-----GTGC-AATGA----Atgaa
gi|8 : A--------------G-GAAAG-ATAGC-T-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T----------CATCTC-TTT-T-C---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA---------ATT-TCTCAAGCA----TCG-------------------AGGG----GTACCACATC------GAT----------T------------------------A---TTTTT---C-T-CCA----A--AT-CCTG-T-AAATGAGG--TAACT-CATCA-GAT-GTAGATT--TTT-----ATGTA-CAA-CTTT-TGGCAGGTT-T------TAATAAAATT--TC--A--A--G-TA-------AACTTTTAATCA-AA-TAT-TA--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA
Alignments
lowQualScore : 1111 2222222222222222 555555555555555555555555555555555555555555555555 333333333333333 3333333 1111111 88888888888888888888888888888888888888888888888888888888888888888 1111111 1111 2222222222222222222222 111 2222 11 111 777777777777777777777777777777777777777777 111111 222222222222 33333 1 1
lowQualScore : 55 6 3 0000 44 3 44 2 6666 2 333 3333333333333333 1 000000000000000000000000000000000000000000000000 1 2 5 555 66 888 2 44 9999999 33 2 5 2 999999999999999 333 3 3 3 0000000 2 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 1111111 3 7777 3 3 555 666 77777 555 666 3 8 2222 4 66 4 8888888888888888888888 55 999 77 44 1 4444 44 000 1 5 5 4 55 4 111111111111111111111111111111111111111111 3 3 3 3 3 333333 0 3 1 000000000000 4 4 00000 44 4 99999 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... ................ . ................................................ . . . ... .. ... . .. ....... .. . . . ............... ... . . . ....... . .. ..... .. . ....... . . . . . . ................................................................. ....... . .... . . ... ... ..... ... ... . . .... . .. . ...................... .. ... .. .. . .... .. ... . . . . .. . .......................................... . . . . . ...... . . . ............ . . ..... .. . ..... .... . . .. . .. . .
lowQualScore : 00 7 3 4444 66 1 22 9 1111 9 777 8888888888888888 7 777777777777777777777777777777777777777777777777 0 9 7 000 88 444 9 44 3333333 99 9 7 9 999999999999999 666 1 1 1 3333333 3 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 3333333 3 1111 3 3 888 222 77777 444 444 6 0 7777 0 66 4 2222222222222222222222 77 333 44 77 4 3333 00 000 4 7 7 0 55 0 555555555555555555555555555555555555555555 6 6 6 6 6 111111 4 3 3 555555555555 4 0 55555 77 0 99999 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTC--AAAAGGT----GTACCGCATCT----GAAAT----------T-TTTT--T------------AA---TNTTT-AT-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTC--AAAAGGT----GTACCGCATCT----GAAAT----------T-TTTN--T------------AA---TNTTT-AT-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TGTTC--AAAAGGTATATGTACCGCATCT----AAAATAAAAAAAAAAT-TTTCAATG-----------AA---TATTT-AT-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGAAAA-TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-AAAATAATAAAATT--GT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-T-------CCCA---------TGCTTACTCTGTAATAACTCCTGGTGCTAATTA----A-TAT-GCCATTGCCTTGTACTCCTG-TACT--AACATT-CATACCT-C--TGTTAATTGGTAA-GA--------------A-G---G-ATAAC-TCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCC-TGCCTCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATC-A--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TGTTG--AAAAGGT----TTTC--CAT-G----GAAGT----------T-TTTT--T-----------------TTTCC-A-----------A--TACATG-T-AATTGTTTGATGAAG--TAACT-G-TTATGTG-ATGAA----TTTTA---A-GT--AAA-TTTT-CCAAACCCT-T------TAATAAAATT--GT--A--A--G-TA-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTA-TCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAG------GTACTGCATCT----ATTTT----------T-TTTT--T------------AA---TATTTAAT-CT---ATTGA--TTTATG-C-AA-------ATGAGGGTCAACT-C-TTGTCTTAATAGA----CTT-----c
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATT-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATA----ATTATTCCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAG-TG--CAATGCG-AAAAA-AA-G---------------G-AAAAG-ATAAC-T-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCC-T-----CATCTC-TTTAT-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA---TTT-T-TGTGAAAATA-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CA--------GTGCA-ATGGA-AA-AA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCC-T-----CATCTCTTTT-T-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATC-A--GTAGCT-TCTCAGGCC----CCAT-CACATT-GGTTG--AAAAGGT----G--CCTCA--T----GGAAT----------T-TTTT--TTTTAGAACTCTCAA---TTCTT-AC-TT---GTTTA--TTCATG-T-AA-------ATAAGG--TAACA-C-TTAGGTC-ATAGAAT--TTT-----ATGCA-AAA-
gi|15 : gagatgaatacaacctttatgcAACTCT-GAT---AATTATCCCATTA--CCCAATGTT---TACT-CTA-TA-T--AAC-TC-C---TGT-GAATGAAAAGGAG-AA-AATATCATCAAAAA--G-GAAAG-ATAAC-T-CG-TATTACAACCA--G---TATAA-AAAAAAA------------AA--C-TGCC-TGCCTC-ATCTC-TTT-TTC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAtaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|16 : aaaGTT-TCTCAGGCA----CCGC-TGCATT-TGTTC--AAAAGGTACA-GTACTGCATCT----GAATT----------T-TTTT--T------------AAATATTTTT-TT-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTTTG------------TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-T------TAACAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TA
gi|17 : TTT-TGTAAAATT-TT-----TAAAAAAATT--TT--A--A--G-TA-------TATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : -TAG-----T---A---AGTGAAT-TGAAGCTA----TT-TTTGTGAAAA---AAAA-TAA-----------------------------------AA-ATAATTAT-GGTG---AT-------TTAT-CCCATTGCT---------TA-TA-T--TAC-TCGTGT-GC----ATGAAAAAGGA-AA-GATAATCATCAGAAA-G-GAAAG-ATAACTT-CA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCT----GAATT----------T-TTTT--TTA----------AA---TATTT-TT-TTTTTATTGA--TTTATG-TTAA-------ATGAGG--TAACT-C-TT-TGTT-----------TT-----A-GTA-AAA-CTTTTCGGAAGGTT-TTTA---AAACAAAATT--TT--A--A--G-TA-------TATTTCTAATCA-AA-T
gi|2 : AATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTC--AAAAG------GTACTGCATCT-----AATT----------T-TTTT--T------------CA---TATTT-AT-TT---ATTGATTTTTATG-T-AA-------ATGAGG--T-ACT-T-TTATGTT-ATAGA----CTTTTTA-A-GTA-AAA-CTTT-TGGAAGGGT-TT-----TGATAAAATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTGTGAAAATT-GAAA-TAATTA-TCCCATTACCCAT--------TGCTT-CTCCAGTATAACTCC-TGTGC-AAT
gi|2 : aa-AATTATCCCATTA--CCCATTGCT---T-CT-CCAGTA-T--AAC-TC-C-T-GTG-CAATG-ACAAAGG-AAAGATAATCATCAAAAATGTGAAAGCATAAC-T-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCCTCATCTC-ATT-T-C---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAGgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|20 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaatAGGC--AAAAAAA-A----A--TTAATC-T--TTAGTT-TTTCA-GC-----CCGC-C------------------------ATGCCGCATAT----AAAAT----------TATTTT--C------------AT---TATTT-ATAAT---ATTTA---TTAT--T-AA-------ATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCC-TA-TCCCA------------------------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCC-T-CCCCCATCTT-TTT-T-TTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCC-TGC-----TCT--TTT-T-C---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATC-T--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--------AAGTAAA-GTACCTCATA-----GAAAT----------C-CCCC--CCCCCCC------AA---TTTTT-ATATT---ACC-A--CTAATGCT-AA-------ATGAGG--TAA-------------------------------------AA-TTTT-CTGAAGGTT-TT-A-----ATAAAATTCTTT--A--ATAG-TA-------TATTTTT-A-----A-CAA-T-GT----ATGC-ACAT--------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAA
gi|3 : ataCT---TAAT-CTA-TA-TTAAAC-----AT-------ATGTACA--GG-AG-AA--------------G-GAAAG-ATAAC-T-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatA-T--AAC-TC--AT-CTT-CAGTCAACATAGG-AA-AA--------------G-GAAAG-ATAGC-T-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCC-T--CACTATCTT-TTT-T-T---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATC-TGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG--C--AA---------GTAC-ACATCT------AAT----------T-TTTT--TTTAAAA------AA---TTTTT-AC-TT---ATTGA--TTTATG-T--A-------ATGAGG--TAACTGCGTTATGTT-ATTAC----TTTTGTTCA-ATAGAAA-CTTT-CGGGAAGTGATT-A---TAAT--AGTTG-TT--AATA--G-TATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATT-T--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TGTTC--AAAAGGT------ACCGCATCTAAAAAAAAT----------T-TT------------------A---TATTT-AG-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-G-TTATGTT-ATAGACTTTTTT-----A-GTA-ACA-TTTT-CGGAAGGTT--------TAATAAAATT--TG--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAAAAA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T----GAAA---------------TG--T------------AT---TATTT-GT-TT---AT--A-----ATG-T---------------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT----------T----------TTTTT-ATCA-AA-T-A-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA--------------G--AAAG-ATAAC-T-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T----GAAA---------------TG--T------------AT---TATTT-GT-TT---AT--A-----ATG-T---------------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA-----------------AAAG-ATAAC-T-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg-----A-GTA-CAATCTAT-CGGAAGGTT-TT-A-----ATAAAATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-T-------CCCATTCTAGTAATGCTTA-TCT-ATTTAAT-----GTGC-AATGA----Atgaa
gi|8 : A--------------G-GAAAG-ATAGC-T-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T----------CATCTC-TTT-T-C---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA---------ATT-TCTCAAGCA----TCG-------------------AGGG----GTACCACATC-------GAT----------T---------------------A---TTTTT-CT-CC---A---A--ATCCTG-T-AA-------ATGAGG--TAACT-CATCA-GAT-GTAGATT--TTT-----ATGTA-CAA-CTTT-TGGCAGGTT-T------TAATAAAATT--TC--A--A--G-TA-------AACTTTTAATCA-AA-TAT-TA--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA
Alignments
lowQualScore : 1111 11111111111111111 4444444444444444444444444444444444444444444444444 333333333333333 3333333 1111111 88888888888888888888888888888888888888888888888888888888888888888 1111111 1111 2222222222222222222222 111 2222 11 111 777777777777777777777777777777777777777777 111111 222222222222 33333 1 1
lowQualScore : 55 6 3 0000 44 3 44 2 6666 2 333 88888888888888888 1 6666666666666666666666666666666666666666666666666 1 666 555 66 888 2 44 9999999 33 2 5 2 999999999999999 333 3 3 3 0000000 2 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 1111111 3 7777 3 3 555 666 77777 555 666 3 8 2222 4 66 4 8888888888888888888888 55 999 77 44 1 4444 44 000 1 5 5 4 55 4 111111111111111111111111111111111111111111 3 3 3 3 3 333333 0 3 1 000000000000 4 4 00000 44 4 99999 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... ................. . ................................................. . ... ... .. ... . .. ....... .. . . . ............... ... . . . ....... . .. ..... .. . ....... . . . . . . ................................................................. ....... . .... . . ... ... ..... ... ... . . .... . .. . ...................... .. ... .. .. . .... .. ... . . . . .. . .......................................... . . . . . ...... . . . ............ . . ..... .. . ..... .... . . .. . .. . .
lowQualScore : 00 7 3 4444 66 1 22 9 1111 9 777 99999999999999999 7 6666666666666666666666666666666666666666666666666 0 999 000 88 444 9 44 3333333 99 9 7 9 999999999999999 666 1 1 1 3333333 3 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 3333333 3 1111 3 3 888 222 77777 444 444 6 0 7777 0 66 4 2222222222222222222222 77 333 44 77 4 3333 00 000 4 7 7 0 55 0 555555555555555555555555555555555555555555 6 6 6 6 6 111111 4 3 3 555555555555 4 0 55555 77 0 99999 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT----GAAAT----------T-TTT---TT------------AA---TNTTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT----GAAAT----------T-TTT---TT------------AA---TNTTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TGTTCA--AAAGGTATATGTACCGCATCT----AAAATAAAAAAAAAAT-TTTCAATG------------AA---TATTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGAAAA-TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-AAAATAATAAAATT--GT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-T-------CCCA---------TGCTTACTCTGTAATAACTCCTGGTGCTAATTA----A-TAT-GCCATTGCCTTGTACTCCTG-TACT--AACATT-CATACCT-C--TGTTAATTGGTAA-GA--------------A-G---G-ATAAC-TCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCC-TGCCTCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATC-A--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TGTTGA--AAAGGT----TTTC--CAT-G----GAAGT----------T-TTT---TT-----------------TTTCCA------------A--TACATG-T-AATTGTTTGATGAAG--TAACT-G-TTATGTG-ATGAA----TTTTA---A-GT--AAA-TTTT-CCAAACCCT-T------TAATAAAATT--GT--A--A--G-TA-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTA-TCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAGGT------ACTGCATCT----ATTTT----------T-TTT---TT------------AA---TATTTAAT-CT---ATTGA--TTTATG-C-AA-------ATGAGGGTCAACT-C-TTGTCTTAATAGA----CTT-----c
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATT-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATA----ATTATTCCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAG-TG--CAATGCG-AAAAA-AA-G---------------G-AAAAG-ATAAC-T-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCC-T-----CATCTC-TTTAT-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA---TTT-T-TGTGAAAATA-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CA--------GTGCA-ATGGA-AA-AA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCC-T-----CATCTCTTTT-T-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATC-A--GTAGCT-TCTCAGGCC----CCAT-CACATT-GGTTGA--AAAGGT----G--CCTCA--T----GGAAT----------T-TTT---TTTTTAGAACTCTCAA---TTCTTA-C-TT---GTTTA--TTCATG-T-AA-------ATAAGG--TAACA-C-TTAGGTC-ATAGAAT--TTT-----ATGCA-AAA-
gi|15 : gagatgaatacaacctttatgcAACTCT-GAT---AATTATCCCATTA--CCCAATGTT---TACT-CTA-TA-T--AAC-TC-C---TGT-GAATGAAAAGGAG-AA-AATATCATCAAAAA--G-GAAAG-ATAAC-T-CG-TATTACAACCA--G---TATAA-AAAAAAA------------AA--C-TGCC-TGCCTC-ATCTC-TTT-TTC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAtaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|16 : aaaGTT-TCTCAGGCA----CCGC-TGCATT-TGTTCA--AAAGGTACA-GTACTGCATCT----GAATT----------T-TTT---TT------------AAATATTTTTT-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTTTG------------TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-T------TAACAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TA
gi|17 : TTT-TGTAAAATT-TT-----TAAAAAAATT--TT--A--A--G-TA-------TATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : -TAG-----T---A---AGTGAAT-TGAAGCTA----TT-TTTGTGAAAA---AAAA-TAA-----------------------------------AA-ATAATTAT-GGTG---AT-------TTAT-CCCATTGCT---------TA-TA-T--TAC-TCGTGT-GC----ATGAAAAAGGA-AA-GATAATCATCAGAAA-G-GAAAG-ATAACTT-CA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCT----GAATT----------T-TTT---TTTA----------AA---TATTTT-T-TTTTTATTGA--TTTATG-TTAA-------ATGAGG--TAACT-C-TT-TGTT-----------TT-----A-GTA-AAA-CTTTTCGGAAGGTT-TTTA---AAACAAAATT--TT--A--A--G-TA-------TATTTCTAATCA-AA-T
gi|2 : AATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAG------GTACTGCATCT-----AATT----------T-TTT---TT------------CA---TATTTA-T-TT---ATTGATTTTTATG-T-AA-------ATGAGG--T-ACT-T-TTATGTT-ATAGA----CTTTTTA-A-GTA-AAA-CTTT-TGGAAGGGT-TT-----TGATAAAATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTGTGAAAATT-GAAA-TAATTA-TCCCATTACCCAT--------TGCTT-CTCCAGTATAACTCC-TGTGC-AAT
gi|2 : aa-AATTATCCCATTA--CCCATTGCT---T-CT-CCAGTA-T--AAC-TC-C-T-GTG-CAATG-ACAAAGG-AAAGATAATCATCAAAAATGTGAAAGCATAAC-T-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCCTCATCTC-ATT-T-C---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAGgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|20 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaatAGGC--AAAAAAA-A----A--TTAATC-T--TTAGTT-TTTCA-GC-----CCGC-C------------------------ATGCCGCATAT----AAAAT----------TATTT---TC------------AT---TATTTA-TAAT---ATTTA---TTAT--T-AA-------ATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCC-TA-TCCCA------------------------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCC-T-CCCCCATCTT-TTT-T-TTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCC-TGC-----TCT--TTT-T-C---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATC-T--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--------AAGTAAA-GTACCTCATA-----GAAAT----------C-CCC---CCCCCCCC------AA---TTTTTA-TATT---ACC-A--CTAATGCT-AA-------ATGAGG--TAA-------------------------------------AA-TTTT-CTGAAGGTT-TT-A-----ATAAAATTCTTT--A--ATAG-TA-------TATTTTT-A-----A-CAA-T-GT----ATGC-ACAT--------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAA
gi|3 : ataCT---TAAT-CTA-TA-TTAAAC-----AT-------ATGTACA--GG-AG-AA--------------G-GAAAG-ATAAC-T-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatA-T--AAC-TC--AT-CTT-CAGTCAACATAGG-AA-AA--------------G-GAAAG-ATAGC-T-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCC-T--CACTATCTT-TTT-T-T---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATC-TGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG--CA--A---------GTAC-ACATCT------AAT----------T-TTT---TTTTAAAA------AA---TTTTTA-C-TT---ATTGA--TTTATG-T--A-------ATGAGG--TAACTGCGTTATGTT-ATTAC----TTTTGTTCA-ATAGAAA-CTTT-CGGGAAGTGATT-A---TAAT--AGTTG-TT--AATA--G-TATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATT-T--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TGTTCA--AAAGGT------ACCGCATCTAAAAAAAAT----------T-TT-------------------A---TATTTA-G-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-G-TTATGTT-ATAGACTTTTTT-----A-GTA-ACA-TTTT-CGGAAGGTT--------TAATAAAATT--TG--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAAAAA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T----GAAA---------------T---GT------------AT---TATTTG-T-TT---AT--A-----ATG-T---------------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT----------T----------TTTTT-ATCA-AA-T-A-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA--------------G--AAAG-ATAAC-T-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T----GAAA---------------T---GT------------AT---TATTTG-T-TT---AT--A-----ATG-T---------------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA-----------------AAAG-ATAAC-T-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg-----A-GTA-CAATCTAT-CGGAAGGTT-TT-A-----ATAAAATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-T-------CCCATTCTAGTAATGCTTA-TCT-ATTTAAT-----GTGC-AATGA----Atgaa
gi|8 : A--------------G-GAAAG-ATAGC-T-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T----------CATCTC-TTT-T-C---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA---------ATT-TCTCAAGCA----TCG-------------------AGGG----GTACCACATC-------GAT----------T----------------------A---TTTTTC-T-CC---A---A--ATCCTG-T-AA-------ATGAGG--TAACT-CATCA-GAT-GTAGATT--TTT-----ATGTA-CAA-CTTT-TGGCAGGTT-T------TAATAAAATT--TC--A--A--G-TA-------AACTTTTAATCA-AA-TAT-TA--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA
Alignments
lowQualScore : 1111 11111111111111111 4444444444444444444444444444444444444444444444444 333333333333333 3333333 1111111 88888888888888888888888888888888888888888888888888888888888888888 1111111 1111 2222222222222222222222 111 2222 11 111 777777777777777777777777777777777777777777 111111 222222222222 33333 1 1
lowQualScore : 55 6 3 0000 44 3 44 2 6666 2 333 88888888888888888 1 6666666666666666666666666666666666666666666666666 1 666 555 66 888 2 44 9999999 33 2 5 2 999999999999999 333 3 3 3 0000000 2 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 1111111 3 7777 3 3 555 666 77777 555 666 3 8 2222 4 66 4 8888888888888888888888 55 999 77 44 1 4444 44 000 1 5 5 4 55 4 111111111111111111111111111111111111111111 3 3 3 3 3 333333 0 3 1 000000000000 4 4 00000 44 4 99999 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... ................. . ................................................. . ... ... .. ... . .. ....... .. . . . ............... ... . . . ....... . .. ..... .. . ....... . . . . . . ................................................................. ....... . .... . . ... ... ..... ... ... . . .... . .. . ...................... .. ... .. .. . .... .. ... . . . . .. . .......................................... . . . . . ...... . . . ............ . . ..... .. . ..... .... . . .. . .. . .
lowQualScore : 00 7 3 4444 66 1 22 9 1111 9 777 99999999999999999 7 6666666666666666666666666666666666666666666666666 0 999 000 88 444 9 44 3333333 99 9 7 9 999999999999999 666 1 1 1 3333333 3 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 3333333 3 1111 3 3 888 222 77777 444 444 6 0 7777 0 66 4 2222222222222222222222 77 333 44 77 4 3333 00 000 4 7 7 0 55 0 555555555555555555555555555555555555555555 6 6 6 6 6 111111 4 3 3 555555555555 4 0 55555 77 0 99999 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT----GAAAT----------T-TTT---TT------------AA---TNTTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT----GAAAT----------T-TTT---TT------------AA---TNTTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TGTTCA--AAAGGTATATGTACCGCATCT----AAAATAAAAAAAAAAT-TTTCAATG------------AA---TATTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGAAAA-TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-AAAATAATAAAATT--GT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-T-------CCCA---------TGCTTACTCTGTAATAACTCCTGGTGCTAATTA----A-TAT-GCCATTGCCTTGTACTCCTG-TACT--AACATT-CATACCT-C--TGTTAATTGGTAA-GA--------------A-G---G-ATAAC-TCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCC-TGCCTCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATC-A--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TGTTGA--AAAGGT----TTTC--CAT-G----GAAGT----------T-TTT---TT-----------------TTTCCA------------A--TACATG-T-AATTGTTTGATGAAG--TAACT-G-TTATGTG-ATGAA----TTTTA---A-GT--AAA-TTTT-CCAAACCCT-T------TAATAAAATT--GT--A--A--G-TA-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTA-TCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAGGT------ACTGCATCT----ATTTT----------T-TTT---TT------------AA---TATTTAAT-CT---ATTGA--TTTATG-C-AA-------ATGAGGGTCAACT-C-TTGTCTTAATAGA----CTT-----c
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATT-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATA----ATTATTCCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAG-TG--CAATGCG-AAAAA-AA-G---------------G-AAAAG-ATAAC-T-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCC-T-----CATCTC-TTTAT-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA---TTT-T-TGTGAAAATA-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCT-ATATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CA--------GTGCA-ATGGA-AA-AA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCC-T-----CATCTCTTTT-T-T---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATC-A--GTAGCT-TCTCAGGCC----CCAT-CACATT-GGTTGA--AAAGGT----G--CCTCA--T----GGAAT----------T-TTT---TTTTTAGAACTCTCAA---TTCTTA-C-TT---GTTTA--TTCATG-T-AA-------ATAAGG--TAACA-C-TTAGGTC-ATAGAAT--TTT-----ATGCA-AAA-
gi|15 : gagatgaatacaacctttatgcAACTCT-GAT---AATTATCCCATTA--CCCAATGTT---TACT-CTA-TA-T--AAC-TC-C---TGT-GAATGAAAAGGAG-AA-AATATCATCAAAAA--G-GAAAG-ATAAC-T-CG-TATTACAACCA--G---TATAA-AAAAAAA------------AA--C-TGCC-TGCCTC-ATCTC-TTT-TTC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAtaaaaaaacttgaatccagatttcaataaaacagtaagct
gi|16 : aaaGTT-TCTCAGGCA----CCGC-TGCATT-TGTTCA--AAAGGTACA-GTACTGCATCT----GAATT----------T-TTT---TT------------AAATATTTTTT-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTTTG------------TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-T------TAACAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TA
gi|17 : TTT-TGTAAAATT-TT-----TAAAAAAATT--TT--A--A--G-TA-------TATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : -TAG-----T---A---AGTGAAT-TGAAGCTA----TT-TTTGTGAAAA---AAAA-TAA-----------------------------------AA-ATAATTAT-GGTG---AT-------TTAT-CCCATTGCT---------TA-TA-T--TAC-TCGTGT-GC----ATGAAAAAGGA-AA-GATAATCATCAGAAA-G-GAAAG-ATAACTT-CA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCT----GAATT----------T-TTT---TTTA----------AA---TATTTT-T-TTTTTATTGA--TTTATG-TTAA-------ATGAGG--TAACT-C-TT-TGTT-----------TT-----A-GTA-AAA-CTTTTCGGAAGGTT-TTTA---AAACAAAATT--TT--A--A--G-TA-------TATTTCTAATCA-AA-T
gi|2 : AATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAG------GTACTGCATCT-----AATT----------T-TTT---TT------------CA---TATTTA-T-TT---ATTGATTTTTATG-T-AA-------ATGAGG--T-ACT-T-TTATGTT-ATAGA----CTTTTTA-A-GTA-AAA-CTTT-TGGAAGGGT-TT-----TGATAAAATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTGTGAAAATT-GAAA-TAATTA-TCCCATTACCCAT--------TGCTT-CTCCAGTATAACTCC-TGTGC-AAT
gi|2 : aa-AATTATCCCATTA--CCCATTGCT---T-CT-CCAGTA-T--AAC-TC-C-T-GTG-CAATG-ACAAAGG-AAAGATAATCATCAAAAATGTGAAAGCATAAC-T-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCCTCATCTC-ATT-T-C---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAGgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|20 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaatAGGC--AAAAAAA-A----A--TTAATC-T--TTAGTT-TTTCA-GC-----CCGC-C------------------------ATGCCGCATAT----AAAAT----------TATTT---TC------------AT---TATTTA-TAAT---ATTTA---TTAT--T-AA-------ATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCC-TA-TCCCA------------------------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCC-T-CCCCCATCTT-TTT-T-TTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCC-TGC-----TCT--TTT-T-C---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATC-T--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--------AAGTAAA-GTACCTCATA-----GAAAT----------C-CCC---CCCCCCCC------AA---TTTTTA-TATT---ACC-A--CTAATGCT-AA-------ATGAGG--TAA-------------------------------------AA-TTTT-CTGAAGGTT-TT-A-----ATAAAATTCTTT--A--ATAG-TA-------TATTTTT-A-----A-CAA-T-GT----ATGC-ACAT--------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAA
gi|3 : ataCT---TAAT-CTA-TA-TTAAAC-----AT-------ATGTACA--GG-AG-AA--------------G-GAAAG-ATAAC-T-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatA-T--AAC-TC--AT-CTT-CAGTCAACATAGG-AA-AA--------------G-GAAAG-ATAGC-T-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCC-T--CACTATCTT-TTT-T-T---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATC-TGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG--CA--A---------GTAC-ACATCT------AAT----------T-TTT---TTTTAAAA------AA---TTTTTA-C-TT---ATTGA--TTTATG-T--A-------ATGAGG--TAACTGCGTTATGTT-ATTAC----TTTTGTTCA-ATAGAAA-CTTT-CGGGAAGTGATT-A---TAAT--AGTTG-TT--AATA--G-TATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATT-T--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TGTTCA--AAAGGT------ACCGCATCTAAAAAAAAT----------T-TT-------------------A---TATTTA-G-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-G-TTATGTT-ATAGACTTTTTT-----A-GTA-ACA-TTTT-CGGAAGGTT--------TAATAAAATT--TG--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAAAAA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T----GAAA---------------T---GT------------AT---TATTTG-T-TT---AT--A-----ATG-T---------------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT----------T----------TTTTT-ATCA-AA-T-A-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA--------------G--AAAG-ATAAC-T-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GGTT----AAAAGT----GTACCGTA--T----GAAA---------------T---GT------------AT---TATTTG-T-TT---AT--A-----ATG-T---------------G--CAACT-C-TTATGTT-ATAG---------------------A-CTTT-CTGAAGGCT-T------TAAT---ATT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA-----------------AAAG-ATAAC-T-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg-----A-GTA-CAATCTAT-CGGAAGGTT-TT-A-----ATAAAATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-T-------CCCATTCTAGTAATGCTTA-TCT-ATTTAAT-----GTGC-AATGA----Atgaa
gi|8 : A--------------G-GAAAG-ATAGC-T-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T----------CATCTC-TTT-T-C---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA---------ATT-TCTCAAGCA----TCG-------------------AGGG----GTACCACATC-------GAT----------T----------------------A---TTTTTC-T-CC---A---A--ATCCTG-T-AA-------ATGAGG--TAACT-CATCA-GAT-GTAGATT--TTT-----ATGTA-CAA-CTTT-TGGCAGGTT-T------TAATAAAATT--TC--A--A--G-TA-------AACTTTTAATCA-AA-TAT-TA--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA
blockSeqs : CA A C CAAG AA G GA G ATCC A CCT TTCAAAAGGTACAG T TGGAATTTTTTTTTTAGAACTCTCAA T AT TTT TG TTT C TA TTGTTTG GT G G A CTTTTGTTCA AGA T T A TTAA A CT TAA TA T TATTGTC A G T T G A ATATGTGGTGCAAATGGGTTT GTGTTT C ATCT A T CTA AAG TAACT ATA TTC G A T C TA T TCCCATTCTAGTAA AC AGT A C T TCCC TT . A . G . TA . CTGTGCAATGACAAAGGAAAGATAATCATCAAAAAT T C T . C ATTTT C C TAAATAAATAAA C C GCCTC CT A TTTT CAAA A A TT T TA A G
blockSeqs : . A . T . . . . . . CT TTTTGTAAAGGT C TAGAAATCCCCCCCCCCCCAA A TA . TT T . A . . . A . ACTTTTTAA AA . . . TAT A G AAT . . . A . . . . . ATGTGTGTGCAAATGATA GG . . . . . TA . . . . G T . T . TCCCATTACCCAT AC AT A C T TCCC T . A . . . . . GTGTGCATGAAAAAGGAAAGATAATCATCAGAAA . . . . . ATTT . C . . . GCCCT C . TC CAAA A A . T . . .
blockSeqs : . . . . . . . . . . CT TTGAAAAGGTT T TCTAATTTTTTTTTAAAAAA T TA . TG T . A . . . . . ACTTTTTTA AA . . . TT A . A . . . A . . . . . GTATGTGTGCAAATGTTT G . . . . . TA . . . . . T . A . TTCCCAT C AT G C T . T . A . . . . . CTGTGAATGAAAAGGAGAAAATATCATCAAAAA . . . . . CAT . A . . . ATCC C . T AAAA A A . T . . .
blockSeqs : . . . . . . . . . . TG TTGAAAAGGTG T TCTGAATTTTTTTTAAATA T C . TG T . A . . . . . AATTTTAT AA . . . TT A . A . . . . . . . . . TTATATATGCAAGTGTTT G . . . . . AA . . . . . T . G . TCCCAT A AA G C T . . . A . . . . . ATCCTGCAATCGACATAGAAAGA . . . . . GT . A . . . CCCC C . T AAAA . A . T . . .
blockSeqs : . . . . . . . . . . TT TTCAAAAGGT T TCTGAATTTTTTTTTAAA A T . TG T . A . . . . . ATTTTTAT AA . . . TA A . A . . . . . . . . . TTATATATGCAAGTGTTT A . . . . . AG . . . . . T . T . . . AT T . G . . . . . . . . . ATCCTGCAATCGACATAGAAAGA . . . . . GT . G . . . CAC T . C AAAA . G . T . . .
blockSeqs : . . . . . . . . . . CT TTCAAAAGG C TATAAAATTATTTTCAT A T . TT T . A . . . . . ATTTTAA AA . . . TA A . A . . . . . . . . . ATATGTGTGCAAATGTT G . . . . . AG . . . . . T . T . . . . . . . . . . . . ATCTTCAGTCAACATAGGAAAA . . . . . GT . A . . . GC T . C AA . A . . . . .
blockSeqs : . . . . . . . . . . CT TTAAAAGTG C TCTATTTTTTTTTTAA A T . TG C . A . . . . . TTTA AC . . . T A . A . . . . . . . . . AATGTGTACAAATTTT G . . . . . AG . . . . . . . A . . . . CAGTGCAATGCGAAAAAAAG . . . . . GT . A . . . . C . T A . A . . . . .
blockSeqs : . . . . . . . . . . TT TTAAAAGTG C TCTAAAAAAAATTTTA T C . TG T . A . . . . . TTA AC . . . T A . A . . . . . . . . . ATTTAAGTTTTA G . . . . . TA . . . . . . . . . . . . CAGTGCAATGGAAAAA . . . . . GT . A . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . GG AAGTAAAG C TCTAATTTTTTTTCA T G . C T . A . . . . . . A . . . T A . A . . . . . . . . . ATTTTT G . . . . . AA . . . . . . . . . . ATATGTACAGGAGAA . . . . . G . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . GG AGGGG C TGGAAGTTTTTTT A T . . A . A . . . . . . . . . . T . . A . . . . . . ATATTT . . . . . . A . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . CAAG C TGAAATGTAT A T . . . . . . . . . . . . . . . T . . . . . . . . . ATATTT . . . . . . T . . . .
blockSeqs : . . . . . . A . TGAAATGTAT A T . . . . . . . . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . TCGATTA T . . . . . . . . . . .
blockSeqCons : TTNAAAAGGTG****** TCTGAATTTTTTTTCAA******************************** ATTTTTA******** T****** T*** TCCCAT**************** AC AT* G* C* *** CC***
originalCons : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTCA--AAAGGT----GTACCGCATCT----GAAAT----------T-TTT---TT------------AA---TNTTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGA----TTT-----A-GTA-AAA-CTTT-CGGAAGGTT-TT-A---TAATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTAATATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TGCCCCCATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
finalCons : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TGTTNAAAAGGTG------TACCGCATCTGAATTTTTTTTCAA--------------------------------TNTTTA-T-TT---ATTGA--TTTATG-T-AA-------ATGAGG--TAACT-C-TTATGTT-ATAGATTTTTA--------GTA-AAA-CTTT-CGGAAGGTT-TT------AATAAAATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTAT---TT-TTTGTGAAAATT-AAAA-TAATTATCCCAT----------------TGCTTACTCTAT-ATAACTCCG-GTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCC-TCC---CATCTC-TTT-T-C---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Alignments
lowQualScore : 1111 111111 44444444444444444444444444444444444444444444444444444 33333333333333333333333333333333 1111111 88888888888888888888888888888888888888888888888888888888888888888 1111111 1111 2222222222222222222222 2222 11 111 777777777777777777777777777777777777777777 111111 222222222222 4444444444 1 1
lowQualScore : 55 6 3 0000 44 3 44 2 6666 2 333 66666 2 999999 1 00000000000000000000000000000000000000000000000000000 2 5 2 5 66 5555 5555 1 33 2 5 33 33333333333333333333333333333333 3 555 3 555 77777 2 77 77777 44 3 0000000 9 3 3 4 4 4 88888888888888888888888888888888888888888888888888888888888888888 1111111 3 7777 3 3 555 666 77777 555 666 3 8 2222 4 66 4 8888888888888888888888 55 888 77 44 1 4444 44 000 1 5 5 4 55 4 111111111111111111111111111111111111111111 3 3 3 3 3 333333 0 3 1 000000000000 4 4444444444 88 4 777 7777 7 2 55 0 55 4 4
lowQualScore : .. . . .... .. . .. . .... . ... ..... . ...... . ..................................................... . . . . .. .... .... . .. . . .. ................................ . ... . ... ..... . .. ..... .. . ....... . . . . . . ................................................................. ....... . .... . . ... ... ..... ... ... . . .... . .. . ...................... .. ... .. .. . .... .. ... . . . . .. . .......................................... . . . . . ...... . . . ............ . .......... .. . ... .... . . .. . .. . .
lowQualScore : 00 7 3 4444 66 1 22 9 1111 9 777 44444 2 444444 7 77777777777777777777777777777777777777777777777777777 0 7 9 7 88 5555 4444 5 99 9 7 66 66666666666666666666666666666666 1 444 1 000 11111 9 33 00000 22 1 0000000 2 1 3 0 0 0 99999999999999999999999999999999999999999999999999999999999999999 3333333 3 1111 3 3 888 222 77777 444 444 6 0 7777 0 66 4 2222222222222222222222 77 777 44 77 4 3333 00 000 4 7 7 0 55 0 555555555555555555555555555555555555555555 6 6 6 6 6 111111 4 3 3 555555555555 4 4444444444 77 0 000 5555 9 3 55 6 55 0 4
consensus : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TG--TTNAAAAGGT----GTACCGCATCTGA--A-----TT----------TTTTT--T----------C----AA----TAT-TT-AT-TT--ATTGA--TTTATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGA---T-TTT----A-GTA-AAA--------CTTT-CGGA---A-GGTTTT---AA-----TAA-AATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTA-T-ATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCCT----C-CC--ATCTC-TTT-TC---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
Reference ( family-502 ) : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TG--TTNAAAAGGT----GTACCGCATCTGA--A-----TT----------TTTTT--T----------C----AA----TNT-TT-AT-TT--ATTGA--TTTATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGA--TT-TTT----A-GTA-AAA--------CTTT-CGGA---A-GGTTTT---AA-----TAA-AATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTNA-TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTA-T-ATAACTCC-GGTGC-AATTA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAT-CCT-CAATGNACANAGG-AA-GA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G---TAAAA-AAAAAAA------------AAACC-TGCCT----C-CC--ATCTC-TTT-TC---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TT-TTTAGCC
gi|1 : AGGC--AAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCACC-TG--TTCAAAAGGTATATGTACCGCATCTAA--A-----ATAAAAAAAAAATTTTCAAT----------G----AA----TAT-TT-AT-TT--ATTGA--TTTATG-T-AAATGAGG--TAACT-C-TTATGTT-ATAGA--AAATTT----A-GTA-AAA--------CTTT-CGGA---A-GGTTTT---AAAATAATAA-AATT--GT--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTC------------AT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTTA-TAG-----T---A---AGT-AAT-TAAAGCTGCTCTTT-TTTGTGAAAATT-TAAA-TAATTA-T-------CCCA---------TGCTTACTCTG-TAATAACTCCTGGTGCTAATTA----A-TAT-GCCATTGCCTTGTACTCCTG-TACT--AACATT-CATACCT-C--TGTTAATTGGTAA-GA--------------A-G---G-ATAAC-TCCG-T-TTACAGCCAA-G---TAAAA-AAAAAAG------------AAACC-TGCCTGCC-T-CC--ATCTC-TTT-TC---AAAAAAAGTGCCTGAGAAAACTA--AACATTAAT--TT-TA-TTTAGCC
gi|10 : AGGC--CAAA-CA-AT---A--TTAATC-A--ACAGTT-TCCCAGGCA----CCCC-TGCATC-TG--TTGAAAAGGT----TTTC--CAT-GGA--AGTTT-TT----------TTTTT--C----------C----AA----TA---C-AT-GTA-ATTG---TTT-------GATGAAG--TAACT-G-TTATGTG-ATGAA--TT-TTA----A-GT--AAA--------TTTT-CCAA---A-CCCTTT---AA-----TAA-AATT--GT--A--A--G-TA-------TATTTTTAATCA-A
gi|11 : ctttcttttctttatcataaggaccacttgaacatatatacaactgatcactgAGGC--AAAA-AA-A----AAATTA-TCGT--TTAGTT-TCTC-GGCAATCCCCGC-CGCATC-TGTTTTGTAAAG------GTACTGCATCT-A--T-----TT----------TTTTT--T----------T----AA----TAT-TTAAT-CT--ATTGA--TTTATG-C-AAATGAGGGTCAACT-C-TTGTCTTAATAGA--CT-Tc
gi|12 : ctactgtggtggtcgttttcaggtaaagctctagttggttgattttaacaatatgaattacttgatttttaaacttttttttattta------------AT---------------T---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC----CTTTA-TAG-----T---A---TGT-ACTATGA-GCTA---TTT-TTTGTGAAAATT-AAAA-TAATTATT-------CCCAT--------TGCTTACTCTA-T-ATAACTCC-AGTGC-AAT
gi|12 : ttgcaaat-AAATA----ATTATTCCCATTGCT---TACT-CTA-TA-T--AAC-TC-CAG-TG--CAATGCG-AAAAA-AA-G---------------G-AAAAG-ATAAC-T-CG-TATTACAGCCAA-G---------AAAACAA------------AAATC-TTCCT-------C--ATCTC-TTTATT---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TT-gcgaaaaaaaggaaaagataactcgtattacagccaagaaaacaaaaatcttcctcatctctttattaaacaaagtgcctgagaaactaaacataattttttgttt
gi|13 : ttgcaaatatttttaagaataatattattcctttatagtatgtactatgagctattttttgtgaaaatta------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-ATTA-TTC---TCTTTA-TAG-----T---A---TGT-AAT-TGTAGCTA---TTT-T-TGTGAAAATA-AAAA-TAATTA-T-------CCCAT--------TGCTTACTCTA-T-ATAACTCC-AGTGC-AATgttt
gi|13 : tgcaa-AAATA----ATTAT-CCCATTGCT---TACT-CTA-TA-T--AAC-TC-CA--------GTGCA-ATGGA-AA-AA--------------G-GAAAG-ATAAC-T-CG-TATTACAGCCAA-G----------AAACAA------------AAATC-TGCCT-------C--ATCTCTTTT-TT---AAACAAAGTGCCTGAG-AAACTA--AACA-TAAT--TT-TTGTTTAggaaaaaggaaagataactcgtattacagccaagaaacaaaaatctgcctcatctcttttttaaacaaagtgcctgagaaactaaacataatttttgttta
gi|14 : tgcaaatatttaagaataatattattctctttatagtatgtaattgtagctatttttgtgaaaataaC--AAAA-AA-A----A--TTAATC-A--GTAGCT-TCTCAGGCC----CCAT-CACATT-GG--TTGAAAAGGT----G--CCTCATG-GA--A-----TT----------TTTTT--TTTAGAACTCTC----AA----TTC-TT-AC-TT--GTTTA--TTCATG-T-AAATAAGG--TAACA-C-TTAGGTC-ATAGA--AT-TTT----ATGCA-AAATAAAAAAACTT---GAATCCA-GATTTC---AA-----TAA-AA
gi|15 : gagatgaatacaacctttatgcAACTCT-GAT---AATTATCCCATTA--CCCAATGTT---TACT-CTA-TA-T--AAC-TC-C---TGT-GAATGAAAAGGAG-AA-AATATCATCAAAAA--G-GAAAG-ATAAC-T-CG-TATTACAACC-A-G---TATAA-AAAAAAA------------AA--C-TGCCTGC--C-TC--ATCTCTTTT-TC---AAAAAAAGTGCCAGAG-AAACTG--AACATTAAT--TT-TT-TTTAcagtaagct
gi|16 : aaaGTT-TCTCAGGCA----CCGC-TGCATT-TG--TTCAAAAGGTACA-GTACTGCATCTGA--A-----TT----------TTTTT--T----------A----AA----TAT-TT-TT-TTTTATTGA--TTTATG-T-AAATGAGG--TAACT-C-TTTTGTT-------------T----A-GTA-AAA--------CTTT-CGGA---A-GGTTTT---AA-----CAA-AATT--TT--A--A--G-TA-------TATTTCT-ATCA-AA-TA
gi|17 : TTTT---AA-----AAA-AATT--TT--A--A--G-TA-------TATTT-T-ATCA-AATTAATTAATTT-GATGC-ATACTC------------AT---------------G---------T-----------GTGTGCAAATGATAAA-A-----AACA-A----T-AGTA--TC---ACTTAAGTAG-----T---ATTCAGT-AAT-TAAGGCTA---TTTCTCTGTGAAAATG-AAAATTAATT
gi|18 : ttttgtaaaat-TAG-----T---A---AGTGAAT-TGAAGCTA----TT-TTTGTGAAAA---AAAA-TAA-----------------------------------A-A-ATAATTAT-GGTG---AT-------TTAT-CCCATTGCT---------TA-TA-T--TAC-TCGTGT-GC----ATGAAAAAGGA-AA-GATAATCATCAGAAA-G-GAAAG-ATAACTT-CA-TATTACAGTCAA-G---TAAAA-AAAA
gi|19 : ACTGCATCTGA--A-----TT----------TTTTT--T----------T----AAATATTTT-TT-TT-TT--ATTGA--TTTATG-TTAAATGAGG--TAACT-C-TT-TGTT------------TT----A-GTA-AAA--------CTTTTCGGA---A-GGTTTTTAAAA-----CAA-AATT--TT--A--A--G-TA-------TATTTCTAATCA-AA-T
gi|2 : AATC-T--TTAGTT-TCTCAGGCA----CCGC-CGCATC-TG--TTCAAAAG------GTACTGCATCT-A--A-----TT----------TTTTT--T----------C-----A----TAT-TT-AT-TT--ATTGATTTTTATG-T-AAATGAGG--T-ACT-T-TTATGTT-ATAGA--CT-TTTTA--A-GTA-AAA--------CTTT-TGGA---AGGGTTTT---GA-----TAA-AATT--TTTAA--A--GTTA-------TATTTCT-ATCA-AA-ACA-TAGTTT-AATGCAATATTC------------ATATGTGGTGCAAATGGG---------T-----------TT------------AAGG-----AATA-AATCTT-A--A-TTC---ACTT-A-TAG-----T---A---AGT-AAT-TGAAGCT----TTT-TTTGTGAAAATT-GAAA-TAATTA-TCCCATTACCCAT--------TGCTT-CTCCAGT-ATAACTCC-TGTGC-AAT
gi|2 : aa-AATTATCCCATTA--CCCATTGCT---T-CT-CCAGTA-T--AAC-TC-C-T-GTG-CAATG-ACAAAGG-AAAGATAATCATCAAAAATGTGAAAGCATAAC-T-CG-TATTACA-CCAA-------------------------------AACC-TGCCCTGCCC-TC--ATCTC-ATT-TC---AAAAAAAGTGCCTGAG-AAACTA--ATCA-TAATTATT-TT-TTTAGgacaaaggaaagataatcatcaaaaatgtgaaagcataactcgtattacaccaaaacctgccctgccctcatctcatttcaaaaaaagtgcctgagaaactaatcataattatttttttag
gi|20 : aaaatctttagtttctcaggcaccgccgcatctgttcaaaaggtactgcatctaattttttttcatatttatttattgatttttatgtaaatgaggtacttttatgttatagactttttaagtaaaacttttggaagggttttgataaaatttttaaagttatatttctatcaaaacatagtttaatgcaatattcatatgtggtgcaaatgggtttaaggaataaatcttaattcacttatagtaagtaattgaagctttttttgtgaaaattgaaatAGGC--AAAAAAA-A----A--TTAATC-T--TTAGTT-TTTCA-GC-----CCGC-C------------------------ATGCCGCATATAA--A-----AT----------TATTT--T----------C----AT----TAT-TT-ATAAT--ATTTA---TTAT--T-AAATG-GG--T-ACT-C-TTATCTT-AT
gi|21 : ttATTACAGCCAA-G---TAAAACAGAAAAA------------AAACC-TGCCT----------ATC-------CC---A--------GCCTGAGACAG-TA--AACA-TAA---TT-TT-TTTAGCC
gi|22 : CC-TGCCT----C-CCCCATCTT-TTT-TTTTTAAA----GTGCCAGAGAAA-CTATTAATATCAAT--TT-TT-TTTA
gi|23 : GCCT----G-C----TCT--TTT-TC---AAAAAAAGTGCCTGAG-AAATTA--TACATTAAT--TT-TT-TT
gi|24 : caAAA-AA-A----A--TTAATC-T--TTAGTT-TCTCAGGCA----GTGC-CACATC-a
gi|3 : ttaggtggAGGC--CAAC-AACA----A--TTAATC-T--TTAGTT-TCTTAGGCA----CTGC-TGCATC-TG--AAGTAAAG-------TACCTCATAGAA--A-----TC----------CCCCC--C----------CCCCCAA----TTT-TT-ATATT--ACC-A--CTAATGCT-AAATGAGG--TAA-------------------------------------AA--------TTTT-CTGA---A-GGTTTT---AA-----TAA-AATTCTTT--A--ATAG-TA-------TATTTTT-A-----A-CAA-T-GT----ATGC-ACAT--------------AT---------------A---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTT---ATTTAA-TAG-----T---A---AGT-AAT-TGAAGCTA----TT-TTTGTGAAA
gi|3 : ataCT---TAAT-CTA-TA-TTAAAC-----AT-------ATGTACA--GG-AG-AA--------------G-GAAAG-ATAAC-T-CA-TCTT-CAGTCAACA---TAGGA-AAAGGAA------------AGAtcttaatctatattaaacatatgtacaggagaaggaaagataactcatcttcagtcaacataggaaaaggaaagatagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|3 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatA-T--AAC-TC--AT-CTT-CAGTCAACATAGG-AA-AA--------------G-GAAAG-ATAGC-T-CG-TATTGCAGCTAA-G---TAAAA-AGAAAAATAAATAAATAAAAAACCCTGCCT----CACT--ATCTT-TTT-TT---TTAAA--GTGC-TGAGAAA-CTA--AGCATTAAT--TT-Ttagctcgtattgcagctaagtaaaaagaaaaataaataaataaaaaaccctgcctcactatctttttttttaaagtgctgagaaactaagcattaatttt
gi|4 : ataaggccaacaacaattaatctttagtttcttaggcactgctgcatctgaagtaaagtacctcatagaaatccccccccccccaatttttatattaccactaatgctaaatgaggtaaaattttctgaaggttttaataaaattctttaatagtatatttttaacaatgtatgcacatatatttaagaataatagtatttatttaatagtaagtaattgaagctatttttgtgaaatcttaatctatattaaacatatgtacaggagaaggaaagAGGC--CAAA-AA-ACAAGA--AGAATC-TGATTAGTCGTCT-AGGCA----CCGCACGCATCCTG----CAA---------GTAC-ACATCT-A--A-----TT----------TTTTT--T----------T----AAAAAATTT-TT-AC-TT--ATTGA--TTTATG-T--AATGAGG--TAACTGCGTTATGTT-AT-TA--CT-TTTGTTCA-ATAGAAA--------CTTT-CGGG---A-AGTGAT---TA-----TAATAGTTG-TT--AATA--G-TATATTGTCTATTTCT-ATCAGAA-TAA-GAGTTTGAATAC-ATACTC------------AT---------------A---------TGTGTGCAAATGTT------------AG-G-----AATACA----T-AGTA-TTCCTAATTTAG-TA------T---G---AGT-AA
gi|5 : ttactgctagttggtctataagctgtcagagttaggcagccatctagctagtagattgctgtatgctcttaattgtgagtttgtttatAGGC--AAAA-AA-A----A--AAAATT-T--TTAGTT-TCTCAGGCA----CCGC-CGCATT-TG--TTCAAAAGGT------ACCGCATCTAA--AAAAAATT----------TT----------------------A----TAT-TT-AG-TT--ATTGA--TTTATG-T-AAATGAGG--TAACT-G-TTATGTT-ATAGACTTT-TTT----A-GTA-ACA--------TTTT-CGGA---A-GGTTT----AA-----TAA-AATT--TG--A--A--G-TA-------TATTTCT-ATCA-AA-TAA-TAGTTT-AATGC-ATACTCGTATGTGTGCAAAT---------------G---------T-----------TT------------AA-G-----AATA-A----T-AGTA-TTC---ACTTT--TAG-----T---A---AGT-AAT-TGAAGCTA---TTT-TTTGTGAAAATT-GAAA-TAA
gi|6 : cttggtcttcgctcgtattaaggacaaataaacaattatgcaaatAGGC--AAAAAAA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GG--TTAAAA--GT----GTACCGTA--TGA-------------------------------------------AA----TGTATT-AT-TT------G--TTTAT-----AATG-TG--CAACT-C-TTATGTT-ATAG---------------------A--------CTTT-CTGA---A-GGCTTT---AA-----T----ATT--TT----------T----------TTTTT-ATCA-AA-T-A-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----TAAGCA-TAC---ACTTAG-TAG-----T---
gi|6 : ttgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA--------------G--AAAG-ATAAC-T-CA-TGATACAACCAA-ATT-TAAAA-AAAAAAA------------Atttaaaacaaaacaaacacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagagaaagataactcatgatacaaccaaatttaaaaaaaaaaaatga
gi|7 : ttgtaaggcaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatattttttttttatcaaatataattgaatgcatactcttatatatgcaagtgtttaaaataataagcatacacttagtagttttaaaacaaaacaaacacatatgtacatgagaaaggaaaggAGGCCAAAAA-AA-A----A--TTATTT-T--TTAGTA-TCTCAGGCC----CCAC-TGCATG-GG--TTAAAA--GT----GTACCGTAT--GA--A-----------------------------------------A----TGTATT-AT-TT--GTT------TAT-----AATG-TG--CAACT-C-TTATGTT-ATAGA-----------------------------CTTT-CTGA---A-GGCTTT---AA-----TA----TT--TT---------------------TTTTT-ATCA-AA-TAA-TAATTG-AATGC-ATACTCTTATATATGCAAGT---------------G---------T-----------TT------------AA-------AATA-A----T-AGCA-TAC---ACTTAG-TAG-----T---tga
gi|7 : tgta-T--AAC-TC--AT-CCTGCAATCGACATAGA-AA-GA-----------------AAAG-ATAAC-T-CA-TGATACAACCAA-ATTTTAAAA-AAAAAAtttaaaacaaaacaaaccacatatgtacatgagaaaggaaaggtaactcatcctgcaatcgacatagaaagaaaagataactcatgatacaaccaaattttaaaaaaaaaatgaa
gi|8 : tgtaaggccaaaaaaaaattattttttagtatctcaggccccactgcatgggttaaaagtgtaccgtatgaaatgtattatttgtttataatgtgcaactcttatgttatagactttctgaaggctttaatatttttttttatcaaataataattgaatgcatactcttatatatgcaagtgtttaaaataatagcatacacttagtagttttaaaacaaaacaaaccacatatgtacatgagaaaggaaagg----A-GTA-CAAT-------CTAT-CGGA---A-GGTTTT---AA-----TAA-AATT--TT--A--A--G--A-------TATTTCT-ATCA-AA-TGA-TAGTTT-GATGC-ATACTCA-----------AT---------------GTGTACAAATT-----------TT------------AA-G-----AATA-A----T-AGTATTTC---ACTTTA-TAGTAACTT---A---AGT-AAT-TGAAGCTA----TT-TTTGTAAAACTTAAAAA-TAATTA-T-------CCCATTCTAGTAATGCTTA-TCTA-T-TTAAT-----GTGC-AATGA----Atgaa
gi|8 : A--------------G-GAAAG-ATAGC-T-CGCTATCACAGAAAA-G---TCAAA-AAAATAA------------CAACC-T-----------C--ATCTC-TTT-TC---CAAA----T----------ACT---AACATTAAT--TTATT-GTTAaaagggaagtaactcatcaaaaaggaaagatagctcgctatcacagaaaagtcaaaaaaataacaacctcatctcttttccaaatactaacattaatttattgtta
gi|9 : agtacaatctatcggaaggttttaataaaattttaagatatttctatcaaatgatagtttgatgcatactcaatgtgtacaaattttaagaataatagtatttcactttatagtaacttaagtaattgaagctatttttgtaaaacttaaaaataattatcccattctagtaatgcttatctatttaatgtgcaatgaaaaagggaagtaactcatcaaaaC--AAAA-AA-A----A--ATAA---------ATT-TCTCAAGCA----TCG-------------------AGGG----GTACCACATC-GATTA-----TT----------TTTCT--C----------C----AA----------------------A--TCC-TG-T-AAATGAGG--TAACT-CATCA-GAT-GTAGA--TT-TTT----ATGTA-CAA--------CTTT-TGGC---A-GGTTTT---AA-----TAA-AATT--TC--A--A--G-TA-------AACTTTTAATCA-AA-TAT-TA--TT-AATAC-ATACTC------------ATTTAA-----------G---------T-----------TTTA----------AA-GTGTTTAAGA-A----T-AGTG-TAC---ACTGAA-TAG-----TATAA---AGT-AATGTGAAGCTA---TTT-TTT-TAAATATA-AAAA-CA