lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222
lowQualScore : 111111111111111 1111111111 11111111111 111 111 555555555555 222222222 6666666666666666666666666 1111 22222222222222 11111111 22222 1111 11 22222222 111 2222 222 1 11 222 1 111 7777 3 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222 1111 1111111 1111 11 2222222 111 1 111 1111 11 222222222 111 33333 11111 77777 11111111 222222222 111 1 1 11 222222222 0000000000000000000000000000000 111111111111 111111111 11 11111 11111111111111111 33333333333
lowQualScore : 4 55 2 2 8888 5 77 33 2 444444444444444 7 2222222222 2 44444444444 444 3 44 3 3 6666 3 3 3 1 4 3 000 5 333333333333 7 0 6 4 99 666666666 8888888888888888888888888 4444 0 55555555555555 11111111 4 9999 99999 5 4 6 4444 6 6 6 6 22 44444444 666 2222 1 888 8 6 66 1 5 33 1 888 5 5 5 5 3 3 000 66 2222 5 5 888 0 0 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 77 4 0000 5 5 8888888 1111 77 5 77 99 8888888 111 1 888 1 4444 6 6 55 6 333333333 111 11111 66666 3 33333 6 55555555 5 5 111111111 000 1 1 0 77 888 5 1 00 5 5 77 5 0 1 66 5 5 5 5 5 5 66 000000000 888 66 5 8888888888888888888888888888888 88888 7777 888888888888 33 2 5 555 99 444444444 2 2 2 33 2 2 2 2 2 88 55 8888 00000 33333333333333333 22222222222 4 4 55 55 8 55
lowQualScore : . .. . . .... . .. .. . ............... . .......... . ........... ... . .. . . .... . . . . . . ... . ............ . . . . .. ......... ......................... .... . .............. ........ . .... ..... . . . .... . . . . .. ........ ... .... . ... . . .. . . .. . ... . . . . . . ... .. .... . . ... . . . .......................................................................................................................................................... ... .. . .... . . ....... .... .. . .. .. ....... ... . ... . .... . . .. . ......... ... ..... ..... . ..... . ........ . . ......... ... . . . .. ... . . .. . . .. . . . .. . . . . . . .. ......... ... .. . ............................... ..... .... ............ .. . . ... .. ......... . . . .. . . . . . .. .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 0 33 9 7 3333 3 11 77 7 111111111111111 7 1111111111 7 22222222222 444 1 22 1 1 5555 1 1 1 8 0 4 000 7 777777777777 3 7 7 0 22 777777777 5555555555555555555555555 2222 8 11111111111111 66666666 4 4444 66666 7 8 7 2222 7 7 7 7 00 22222222 222 7777 4 999 4 0 44 4 7 66 7 111 7 7 7 7 3 7 555 99 5555 0 0 888 0 9 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 666 99 3 4444 7 7 6666666 4444 99 7 66 88 3333333 777 3 333 0 2222 7 7 88 7 000000000 777 00000 77777 5 33333 7 88888888 7 7 777777777 000 4 4 1 99 666 7 4 77 7 7 44 7 7 4 99 0 0 0 0 0 0 99 222222222 888 99 0 0000000000000000000000000000000 33333 1111 777777777777 99 9 7 000 66 444444444 7 7 7 77 7 7 5 5 5 77 55 5555 00000 55555555555555555 00000000000 0 0 55 55 0 55
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GANAATTTC---AC----TTGT-CC--G---A----AAAAAAT-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT---CTTT-ATCA-----A---TA-AAGTTACTT-TTGNTTTTACA--TAA---------TAAAAAT---G---------------------TAC----AGCCTTTTCCTCAAA-------ATT----GT--TTTCA-GTTTTTGTTT----GAT--C-CTT-TTTTTTTTTC-G----TATT-CCTTG-TCC-TTTT-CAGCCTGGGA--------CTTGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGT-GCATGA-T--TCGTTT--CGTTTTGTTTCG-A-T-AA-CAAACTTGT-C--CATAATGGATG-TGCTATT---TTAACTCC-GGTA-A-----A----T-A-AAATCC-G-AG-------CCCGAA----T-CTAA----A-CA--TANTAGC-AT------TTGCAAA--TA---TTTGGA-GT----ATNT--GNAA-T-TG--TN------T-TT------------T-----------ACGTTA--TTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCC-AAAT-------AT---TTTAGTG---CACG----G-AC-TAA--CACGTCA-AGCANC----TAA---AAAAAA---GT-----TATACCATT-GA-TCA----G---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCAT-CAAG--TTAG--CTGTCG-ATATA-AGCG-A-GAG-G-CACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TGT------C--T---CT--TGGATT-TTTCGCACCCCCAAAA---------ATACCGGAT-TGG-----TAATT----TTTTT----CC---AC-T--TG-TC-CACGGA---C--AACTA-A-CGCT-AA-AAAAA-T-T--A-C-T-T-GTC-CGGTTA-AAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( gi|4 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGT-CC--A---A----AAAAAAT-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT---CTTT-ATCA-----A---TA-AAGTTACTT-TTGATTTTACA--TAA---------TAAAAAT---G---------------------TAC----AGCCTTTTCCTCAAA-------ATT----GT--TTTCA-GTTTTTGTTT----GAT--CACTT-TTTTTTCTTC-G----TATT-CCTTG-TCC-TTTT-CAGCCAGGGA--------CTTGCGTTTTTTTTTTACTGATT--ATCGTCAGTCCTTTGT-GCATGA-T--TCGTTT-TCGTTTTGTTTTG-A-T-AA-CTAGCTTAT-C--CA----GGATG-T-CTATT---TTAACTCC-GGTA-A-----A----T------------AG-------CCCGAA----G-CTAA----A-CA--TAATA-C-AT------TTGCAAA--TA--ATTTGGA-GT----ACAT--GCA----TG--TA------TATT------------T-----------ACGTTT--TTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCC-AAAT-------AT---TTTAGTG---CACG----G-AC-TAA--CACGTCA-ATCGGC----TAA---AAAAAA--TGT-----TATAC-----GA-TCA----G---TCAC-A-CC--T---CGTCGCAC---AC-TGGTCAT-CAAG--TTAG--CTGTCG-ATATG-AGCG-A-GAA-G-CACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TGT------C--T---CT--TGGATT-TTTC---------------------ATAC------TGG-----TAATT----TTTTT----CC---AC-T--TG-TC-CACGGA---C--AACTA-A-CGCT-AA-AAAAA-T-T--A-C-T-T-GTC-CGGTTT-AAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C--T--C-GG-CAA-TAA-------TA-AT---TAGAATT-C---AC----GTGT-CC--A---A----AAAAA-T-ATT-A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCT---CTTT-ATCA-----ACATTA-AAGT-ACTTATTGATTTAACA--TAA---------TAAAAAT---G---------------------TAC----AGCCTTTTCC--AAA-------ATT----GT--TT-CA-GTTTT-GTTT----GATTCCACTT-TTTTTTTTCCCG----TTAT-CCTTGGTCC-TTTT--AGCCAGGGA--------CTTGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGT-GCA-AA-TA-TCGTT---CGTTTTGTTTTG-AAT-AAACTAGCTTAT-C--CA----GGATG-TGCTATT---TTAACTCC-GG-A-A-----A----T------------AG-------CCGAAA----T-CTAA----AACA--AAA-A-C-AT--------GCAAA--TA---TTTGGA-GT----A-A---GCA----TG--TA------TATT------------TTAT--------ACGTTT----GTCGGGCGTAT-ATA--C-AAC-AAA-------TTA------TA--TA-CACAAA----CCCC-CAAT-------AT---TTT-GTGG--CA-G----G-AC-TAA--CACGTCA-ATCGGC----TAA---AAAAAAAATGT-----TATAC-----G--TCA----G---TCAC-A-CCC-T---CGTCGCAC---AC-TG-TCAT-CAAG--TTAG--CTGTCG-ATATG-AGCG-A-GAA-G-CACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTAT--TGT------CTTT---CT--TGGA-T-TTTC---------------------ATAC------T-G-----TAA-T----TTTTT----CC---AC-T--TG-TCTCACGGA---CA-AACTA-A-CGCTAAA-AAAAA-T-T--A-C-T-T-GTC-CGGTTA-TAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|5 : aCAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GA--AT----------------------------------AAT-TTC-A--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCCAGACTTT-TACA-----C---TG-AAA----------AATTTAC---CAC---------GGAAAATCTTG---------------------TACCAAGAGACTT------GAA-------ATT----------CCGCGTTTCTGGTG----GGT------T-TTTTTTTTTC-G----TATT-CCTTG-TCC-TTTT-CAGCCTAGGA--------CTTGTGTTTTTTTG--ACTGATTT-ATCGTCAGTCCTTTGT-GCATGAAT--TCATTT--CGTTTTGTTTCG-A-T-AA-CAAACTTGT-T--CATAATAGATG-TGCTATT---TTAACTCC-GGTA-ATAATAA----TCCCG--------AG-------TCCGAA----T-CTAA----A-AA--T--TAGT-AT------TTGCAAA--TA----TTGGA-GT----ATTT--AAAAAT-TGGTTC------T-TT------------T-----------ACGTTCA-TTGTCG--TGTATGATA--T-A-C-AAT-------TAAAT---TTA--CA-CATAAA-CCACCCC-AA-T-------AT---TTTAGTG---CACG----G-ACCTAA--CAAGTCA-AGTACC----TAA---AAAA-----GT-----TATACCATTGAA-TCA----G---TCAC-A-CT--T---GG-CACAC---AT-TGGTCAT-CAAG--TTAG--CTGTCG-ATATA-AGCG-A-GAG-G-CACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTAT--TGT------C--T---GT--TGGATT-TTTCGCAGCTCCAAAG---------ATACCGGATTTGG-----TAATT----TTTCT----CC---CA-G--TG-TC-CATGGA---C--AA-TA-A-CGCT-AA-AAAAA-T-T--ATC-T-T-GTA-CGGTAA-AAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGtt
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAATACATTGTA-AT---GATAATTTC---AC----TTGT-TC--G---G----AAAAAAA-ATT-A--CT-T-G----TC-------------CACTAG-AAAA-TTTACCATGTCT---CTTT-ATCAAAAGTA---TA-AAGTTAATT-TTGTTTTTACA--TAA---------TAAAAAT---T---------------------TAC----AGCCTTTT-CTCAAA-------ATT----GT--TTTCA-GTTTTTGTTT----GAT--C
gi|8 : CAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-CT--CAGGGCAAGTAA-------TAGAT---GAAAATTTTCAAAC----TTGT--C--A---G----AAAAAA--ATT-A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTACctgttatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|12 : CAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C--T--C-GGGCAAG-AA-------TA-A----GATAATTTC---AC----TTGT-CC--A---A----AAAAAAT-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT---CTTTAATCA-----AAAGTATAAATTACTT-TTGATTTTACA--TAN---------NNNNNNN---N---------------------NNN----NNNNNNNNNNNNNNNNNNGAGTATT----ATGATTTCA-AATTTTGTTT----acggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|17 : CAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TGC---C-C-CT--C-GGG-AAGTAA--------A-AT---GATAATTT-----C----CTGT-CG--A---A----AAAAA---ATT-A--CT-T-G----TC-CAGAACTT-TT
gi|9 : gCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-TT--C-TTGCAG---------------T---GAAAATTTC---AC----TTGT-CC--G---A----AAGAAAA-GTA-A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCT---CTCT-CTCT-----C---T----CTCTCTT-TTTTTTTTATAAGTAATCAAAGTCCTAAAAAT---GTCAATTTTGTTATTTCAATTTTAG----AGCCTTTT--TTAAA---------T----GC--TTTGA-GTTTTTCTTT----GAC--Cgag
gi|10 : GGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGT-CCG-A---A----AAAAAAT--TT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT---CTTT-ATCAAAAGTA---TA-AAGTTAATT-TTGTTGTTACA--TAA---------TAAAAAT---T---------------------TAC----AGCCTTTT-CTCAAA-------ATT----GT--TTTCA-GTTTTTGTTT----GAT--C-CTT-TTccgttataaatgattagaaatataaccctttatctcaattatatct
gi|16 : GGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-CC--C-CGGCAAGTAAG------TA-TTGG-GA-AATTTCA--AC----TTGT-CC--A---AGTACAAAAAA----T-A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|13 : gGTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-CC--A-GGACAAGTAA-------T-------GGGAATTTC---AC----CTGT-CCGAA---G----AAAAAGTAACT-AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT----TTT-ATTA----------A-AAGTAAC
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C--T--C-GGGCAAGTAA-------TA-ATTGGGATAATTCC----CTTGATTGT-CC--G---A----AAAAAAcaaagttctagcaatgatagttttgcaattacaataaaagaacaacct
gi|3 : tt-AGTCAAA-ACACT-TG----T-C--T--C-GGGCAAGTAA-------TA-ATTGGGATAATTCC----CTTGATTGT-CCG-A---A----AAAAAAA-ATT-A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TTttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|18 : -AGTGAGA-GCACT-TG----T-C-CC--C-AGGCAAAT-G-------TA-AT---GGAAATTTA---AC----TTGT-CC--A---A----AAAAAA----------T-T-C----TC-CAG-ACTT-TTACAattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|7 : aA-GCACTGTG----T-CACTGTC-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGTGCCG-A---A----AAAAAAA-ATTAA--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGgaa
gi|14 : aCACT-TG----T-C-CA--C-GGACAACTAA-------CG-CT---AAAAAATT----AC----TTGT-CC--GGTTA----AACAAAT-Agaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|1 : acgcatttcttaaaagaaaagtttattgtttcttggatttttcgcactccaaagataccggattggtaatttttttcTCTTGGAA-------ATTCGCCGT--TCTCT-TTATTTGTTT----GA---AATTTCTTTTTTATTC-GTGGCTATTCCCTTG-TCCTTTTT-CAGCCTGAGACTAAAAGTCTTGCGATCTTT---------TT--ATCG-CAGTC---TGT-CCATGA-TGGTCGTTTCCCGTTTCGTTTTGAA-T-AA-AAAACTC-T-CGTCATAATGGATG-TGCTATTTCATTAACCGC-GGTA-A-----AATATT------------AAACTAAATCCCGAGAGACG-CCGA----A-TC--TAACA-C------------CAAAATTAGCATTTGGA-GA----ATATTGGGA----AG--TC------T-TT------------TAAGCCGAGATAACGCTTTATTGTCA--CATAGTATA--CAA-C-AAA-------TTAATATCTTA--CATCATAAATACACCCC-AAATA------ATTAATTTCGTGTGCCACG----G-AC-TAAACCACGTCAGAGCAGCTTTATAAAATAAAAAA--TGTGTCTCT-TACCATT-GATTCA----GACTTCACTATCC--TTAACGGCGGACAAAACATGGTCATGCA--------------CG---ATC-AGCG-A-GAAGG-CA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTGTTTACCCC--T---CT--TGGATTGTTTCCGTCCACCCCCAAAAAGG---ATACCGCGATTGG-----T-ATT----TTTTT----CCG--AC-T--TGTTC-CATGAGTACC--AACTATATCGCT-AT-AAAA----T--A-C-T-TCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCCcatgtacaagtcgggcgagccaggcatactaattccacacccc
gi|8 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagaTT----GT--TTT-----TTTTGTTTTGGAGGT--TTTTT-TTTTTTTTTC-G----TATT-CTTTT-TCC--TTT-CAGCTA-GGA--------CTTGCG---TTTTTTGACTGATT------------TTTTGT--------T--TCG------------------A-T-AA-CAAAGTTG--C--CATAT-GGATGTT-CTATT---TTAACTCCAAGTA-A-----A----T------------AATAAAT--CCCGAT----GTCCAAATCTA-CAT-TAAAA-CAATTAGTAATTGCAA----A--ATATGGA-GT----ACAT--GTA----TT--TAAAAATTTGTTCTTTTAAGCCGGT-----------ACGTTA--TTGTCG--CGTATGAAA--T-A-C-AAAATTAAATTTAAT---TTAACCA-CATAAA-ACACC
gi|7 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttg-GTTTCTGGTG----GGT--T--TT-TTTTTTTTTC-G----TATT-CCTTG-TCC-TTTT-CAGCCTAGGA--------CTTGTG---TTTTTTGACTGATT--TTCGTCAGTCCTTTGTGGCATGA-T--TCAATT-TCGTTTTGTTTCG-A-TAAA-CAAACTTGT-C--CATAATAGATG-TGCTATT---TTAACTCC-GGTATA-----A----TAAATCCCG----AG-------TCCGAA----T-CTAA----A-AA--T--TAGT-AT------TTGCAAA--TA----TTGGA-GT----ATTT--AAAATT-TG--T-------TCTT------------TA----------ACGTTA--TTGTCG--TGTATGATA--T-A-CAAAA-------TTAAT---TTA--CA-CATAAA-CCACCCC--AAT-------AT---TTTAGTG---CACG----G-AC-TAA--CAAGTCA-AGTACC----TAA---AAAA-----GT-----TATACCATT-GA-TCA----G---TCAC-A-CC--T---TGGCACAC---AT-T-GTCAT-CAAG--TTAG--CTGTCG-ATATA-AGCGAA-GAG-G-CACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTAT--TGT------C--T---GT--TGGATT-TTTCGCACTCGTGCAAAGCTAAAAGATACCGGAT-TGG-----TAATT----TTTTTC---CC---AG-T--TG-TC-CATGGA---C---ACTACA-CGCT--A-AAAAA-T-T--A-C-T-T-GTA-CGGTTA-AAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|3 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacttttacactgaaaaatttaccacggaaatcttgtaccaagagacttgaaattcgcTT-ATTTTTCCCC-G----TATT-CCTTG-TCC-TTTTTCAGCCTGGGA--------CTTGCGTGTTTTG---ACTGATTTTATCG-CAGTCTTTTGT-GCATGA-T--T-GTTT--CGTTTTGTTTTG-A-T-AA-CAAACTTGTTC--CATAATGGATG-TGCTATT---TTAACTCCAGGCA-A-----A----TTAAAAATCCCGAGG-------CCCGAA----T-CTAA----G-CAATTAGTT----T------TTG-AAA--T----TCTGGAAGT----A--T--TCAAATTTG--TC------TTTTAAGCGG------T-----------ACGTTA--TT-TCG--CGTATTATAAAC-A-C-AAA-------TTAAT-----A--CA-CATAAA--CACCCCCAAATTTACAGTAT---TTT-GTG---CACG----GGAC-TAAA-CACGTCA-AGCACCC---TAA---AAAAA----GT-----TTTACCATT-GA-TCA----G---TTAC-A-CC--T---CGACGCAC---AC-TAGTCATTCAAG--TTAG----GTCGGATATA-AGCG-A-GAG-G-CACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTAT--TGT------T--T---CT--TGGATT-TTTTCGCACTCCAAAG---------ATACCGGAT-TGG-----TAA-T----TTTTT----CC---A--T--TG-TC-CACGGA---CAAAACTA-A-CGCT-AA-AAAAATT-T--A-C-T-T-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCC
gi|11 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgTTTTGACTGATTT-ATCGTCAGTC-TTTGT-GCATGA-T--TTGTTT--CGTTTTGTTTTG-A-T-AA-CAAACTTGT-C--CATAATGGATG-TGCTATT---TTAACTCC-GGCA-A-----A----TAATAAATCCCG-AG-------CCCGAA----T-CTAA----G-CAATTAGT----TT------TTGCAAA--TA----TTGGA-GT----Atgtc
gi|2 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgTTGT-C--CATAATGGATG-TGCTATT---TTAACTCC-GGTA-A-----A----TAATAAATCCTG-AG-------CCCAAA----T-CTAA----A-CA---ATTAGC-AT------TTGCAAA--TA----TTGGA-GT----tttcaaatttgttcttttaagccggtacgttattg
gi|2 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattaAA----C-CCNA----A-CA---ATTAGC-AT------TTGCAAA--TA----TTGGA-GTCTTAACCC--G-------G--TA-----------------------------------CGTTA--TTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCC-AAAT-------AT---TTCAGTG---CATGCACAG-AC-TAA--CACGTCA-AGCAGC----TAA---AAAAAA--AGT-----TATACCATT-GA-TCATGCAG---TCAC-A-CC--T---TGGCGCAC---AC-TGGTCAT-CAGGGTTTAAGTCTGTCG-A-ATA-AGCG-A-GAG-GGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTT--TGTT-----C--T---CT--TGGATT-TTTTTTGCAATCTCAAAG-------ATAC------CGG-------ATTGTAATTTTT----CC---AC-T--TG-TCTCACGGA---CC-AACTA---C-CT-AA-AAAAA-T-T--A-CTT-T-GTC-CGG-TA-AAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|8 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttAC-A-CCGCT---CG-CGC-C---ACATGGTCAT-CAAG--TTAG--CTGTCA-ATATATAGCG-ATGAG-G-CAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTAT--TGT------C--TGGATTAATGGATT-TTTCGCACTCCAAAG----------ATAC------CGGATTAGTAATT----TTTTT----CC---AC-T--TG-TC-CACGGA---C--AACTA-A-CGCT-AA-AAAAA-T-T--A-C-T-T-GTC-CGGTTA-AAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|14 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTAT--TGT------T--T---CT--TGGATT-TTTCGCACTCCAAAG----------ATACCGGAT-TGG-----TAATT----TTTTT----CC---AC-T--TG-TC-CACGGA---C--AACTA-A-CGCT--A-AAAAA-T-T--A-C-T-T-GTC-CGGTTA-AAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCC
gi|7 : C---------------------GTAC------AAG-----TAATT----TTTTA----GC---GTGTAGTG-TC-CATGGA---C--AACT-----GGG-AA-AAAAA-T-T--A-C-C-A-ATC-CGGT
gi|5 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacttttacactgaaaaatttaccacggaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagatGA-----TAATT----TTTTTAGCGTT---A--T--TG-TC-CATGGA---C---ACT-----GGG-AG-AAAAA-T-T--A-C-CAA-ATC-CGGTgttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : caggggtgtggaaatatctagtgatagcacttgtcctcgggcaagtaataatgaataatttcacttgtcccgaaaaaaaatttacttgtccagacttttacactgaaaaatttaccacggaaaatcttgtaccaagagacttgaaattccgcgtttctggtgggtttttttttttcgtattccttgtccttttcagcctaggacttgtgtttttttgactgatttatcgtcagtcctttgtgcatgaattcatttcgttttgtttcgataacaaacttgttcataatagatgtgctattttaactccggtaataataatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaaattggttcttttacgttcattgtcgtgtatgatatacaattaaatttacacataaaccaccccaatattttagtgcacggacctaacaagtcaagtacctaaaaaagttataccattgaatcagtcacacttggcacacattggtcatcaagttagctgtcgatataagcgagaggcacgttttattgacgcattttttaaaagacaaagtttattgtctgttggatttttcgcagctccaaagatG-----TAATT----TTTTTAGCGTT---AG-T--TG-TC-CGTGGA---C--AAGTG-G------AA-AAAAA-T-T--A-C-T-A-ATC-CGGTttgtacggtaaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|14 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagatG-----TAATT----TTTTA----GCGTTAG-T--TG-TC-CGTGGA---C--AAGTG-G------AA-AAAAA-T-T--A-C-C-A-ATC-CGGTttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|10 : acgcatttcttaaaagaaaagtttattgtttcttggatttttcgcactccaaagatC---AC-T--TG-TC-CTCGGG---C--AAGTA-A----T-AATGATAA-T-TTCA-C-T-T-GTC-CGttgtccggttaaacaaatacatgtacaagtcgggcgagccaggcatactaattccacacccc
gi|15 : ggggtgtggaaatatctagtgagag-T--TG-TC-CACGAA---T--AACTA-A-CAGT-AA-AAAAA-AAT--A-C-T-T-TCC-CGGTTA-AAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCTaaaaaaaatttacttgtccagacttttacactagaaaaatttaccatgtctctttatcaaaagtataaagttaattttgttgttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatccttttatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|17 : taatatttaaaaagtttcacgctgtattttggcactctcaagataagggcatgatttata-AA-AAAAA-T-T--A-C-T-T-GTC-CAGa
gi|19 : gcaggggtgtggaaatatctaggagagcaattgcccctcgggaagtaaaatgataatttcctgtcga-T-GTC-CAGTTC-AAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCaacttttgag
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 111 1111 11 444444444444 222222222 5555555555555555555555 1111111 111 22222222222 11 22222222222 1111 1 22222222 1111 111 1 111111 1 1 4444444444444444444444444 111 111111 222 00000000000000000000000000000000000000000000000000000000000000000000000000 1 2222222 11 1111111 1111 111 11 22222 111 11111 1111 111 1 11111 1 111111 11 3333333333333 111111 11111111111111111 22222222222
lowQualScore : 3 44 2 2 8888 5 77 33 2 1111111 2 222 3 8888 1111 2 5 9999 55 2 33 2 2 6666 2 2 2 0 3 2 2 5 777777777777 5 5 33 77 222222222 5 0000000000000000000000 8888888 444 11111111111 9999 22 4 55 00000000000 5 2222 5 5 1 00000000 1 8888 0 2 000 6 3 5 0 5 444444 0 66 0 0 66 4 33 777 8 4 2222222222222222222222222 4 111 222222 4 777 333 4 4 1 4 8 66666666666666666666666666666666666666666666666666666666666666666666666666 66 4 66 2 66 0 1111111 8888 66 5 33 0 5 8888888 77 77 8 2222 555 5 5 33 5 1 00000 5 5 555 5 44444 4 5 7777 000 5 0 66 888 4 22222 4 5 5 66 66 5 5 5 5 0 0 66 4 4 4 4 4 4 66 4 222222 66 777 66 00 66 66 0000000000000 99 777 4 4 0 7 4 4 1 4 8 222222 8 4 44 4 4 4 4 3 3 7 55 7777 99999 00000000000000000 88888888888 3 3 55 55 7 55
lowQualScore : . .. . . .... . .. .. . ....... . ... . .... .... . . .... .. . .. . . .... . . . . . . . . ............ . . .. .. ......... . ...................... ....... ... ........... .... .. . .. ........... . .... . . . ........ . .... . . ... . . . . . ...... . .. . . .. . .. ... . . ......................... . ... ...... . ... ... . . . . . .......................................................................... .. . .. . .. . ....... .... .. . .. . . ....... .. .. . .... ... . . .. . . ..... . . ... . ..... . . .... ... . . .. ... . ..... . . . .. .. . . . . . . .. . . . . . . .. . ...... .. ... .. .. .. .. ............. .. ... . . . . . . . . . ...... . . .. . . . . . . . .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 6 22 7 7 3333 3 11 77 7 3333333 7 000 6 1111 3333 7 3 3333 44 9 99 9 9 1111 9 9 9 8 6 0 5 0 888888888888 2 7 77 99 999999999 7 9999999999999999999999 6666666 222 22222222222 4444 22 0 55 11111111111 7 1111 7 7 4 77777777 7 1111 1 0 222 2 9 0 1 0 555555 1 99 0 0 11 4 77 888 9 4 4444444444444444444444444 4 444 888888 4 222 333 4 4 9 6 9 99999999999999999999999999999999999999999999999999999999999999999999999999 11 4 99 5 99 0 2222222 9999 99 0 11 1 0 6666666 99 99 4 1111 777 7 7 66 7 0 00000 7 0 777 7 33333 3 7 9999 000 0 0 99 888 5 88888 5 0 0 99 99 0 0 0 0 0 1 11 4 4 4 4 4 4 11 4 888888 11 888 11 66 11 11 3333333333333 11 888 4 4 1 3 4 4 1 0 0 111111 0 0 88 0 0 0 0 6 6 3 00 7777 11111 66666666666666666 22222222222 6 6 00 00 3 00
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGT-CCG-A----AAAAAAN-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCA-----A---TA-AAGTTACTT-TTGNTTTTACA--TAA---------T-AAAAATN---------------------TAC-------AGCCTTTTCCTCAAA-------A---TT----GT--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-GGTA-AA----T--A--A-A----AT-CCC--GA-G-C-CCGAATCT------AA-AC--A-ATTAGCATTTGCA-AAT-ATTTGGA-GT---------------------A--TTTGNA---A-----TT-G--T----NT-TT---------TA--------CG--TT-ATTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------A--T--TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGCT-----AAA-AAAAA---GT-TAT-----ACCATTG-AT----CAG---TCAC-A-CC--T---CGGCGCACA---C-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-GA-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTATT--G-T------C--T---CT--TGGA--TT--TTTCG--CACCC--------CCAAAG-A---TACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( family-5017 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GANAATTTC---AC----TTGT-CCG-A----AAAAAAT-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCA-----A---TA-AAGTTACTT-TTGNTTTTACA--TAA---------T-AAAAATG---------------------TAC-------AGCCTTTTCCTCAAA-------A---TT----GT--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-GGTA-AA----T--A--A-A----AT-CC---GA-G-C-CCGAATCT------AA-AC--ATANTAGCATTTGCA-AAT-ATTTGGA-GT---------------------A--TNTGNA---A-----TT-G--T----NT-TT---------TA--------CG--TT-ATTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------A--T--TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCANCT-----AAA-AAAAA---GT-TAT-----ACCATTG-AT----CAG---TCAC-A-CC--T---CGGCGCACA---C-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-GA-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTATT--G-T------C--T---CT--TGGA--TT--TTTCG--CACCC--------CCAAAA-A---TACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|1 : TCTTGGAA-------A---TTCGCCGT--TCTCT-TTATTTGTTT--GA---AA-T----TTCTTTTTTATTCGTGGCTATTCCCTTG-TCCTTTTTCAGCCTGAGACTAAAAGTCTTGCGATCTTTTT-----------ATCG-CAGTC---TGTC-CATGA-TGGTCG-TTTCCCGTTTCGTTTTGAATAA-AAAACTCTCGT-C-ATAATGGATGTGCTATTTCATTAACCGC-GGTA-AAATATT--A--A-ACTAAAT-CCCGAGA-GACGCCGAATCT------AACACCAAAATTAGCATTTGGAGAAT-ATTGGGAAGT---------------------C--TTTTAA---G-----CC-G-------AG-AT---------AA--------CGCTTT-ATTGTCA--CATAGTATA--CAACAAA-------TTAATATCTTA--CATCATAAATACACCCCAAAT-------AATTAATTTCG----TGTGCCACGG-AC-TAAACCACGTCAGAGCAGCTTTATAAAATAAAAA---ATGTGTCTCTTACCATTG-ATT---CAGACTTCACTATCC--TTAACGGCGGACAAAACATGGTCA-TGCA--------------C-GATC---AGCG-A-GAAGGCA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTG-TTTACCCC--T---CT--TGGA--TTGTTTCCGTCCACCC--------CCAAAA-AGGATACCGCGA-TTGGT-ATTTTTTT-CCGACTTGTTC-CATGAGTACC--AACTATATCGCT-ATAAAA----TA-C-TTCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCC
gi|10 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagaGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGT-CCG-A----AAAAAAA-TTT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCAAAAGTA---TA-AAGTTAATT-TTGTTGTTACA--TAA---------T-AAAAATT---------------------TAC-------AGCCTTTT-CTCAAA-------A---TT----GT--TTTCA-GTTTTTGTTT--GA---TC-C----TTTT
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C--T--C-GGGCAAGTAA-------TA-ATTGGGATAATTCC----CTTGATTGT-CCG-A----AAAAAAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|11 : ttTTTTGACTGATTT-ATCGTCAGTC-TTTGTG-CATGA-T--TTG-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-GGCA-AA----T--AATA-A----ATCCC---GA-G-C-CCGAATCT------AA-GC--A-ATTAGTTTTTGCA-AAT-A-TTGGA-GT---------------------A--TTTCAA---AT----TT-G--T----TC-TTTTAAGCCGGTA--------CG--TT-ATTGttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|12 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgCAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C--T--C-GGGCAAG-AA-------TA-A----GATAATTTC---AC----TTGT-CCA-A----AAAAAAT-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTTAATCA-----AAAGTATAAATTACTT-TTGATTTTACA--TAN---------N-NNNNNNN---------------------NNN-------NNNNNNNNNNNNNNNNNNGAGTA---TT----ATGATTTCA-AATTTTGTTT--
gi|13 : GTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-CC--A-GGACAAGTAA-------T-------GGGAATTTC---AC----CTGT-CCG-AAG--AAAAAGTAACT-AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT-TTT-ATTA----------A-AAGTAAC
gi|14 : ACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTATT--G-T------T--T---CT--TGGA--TT--TTTCG--CACTC--------C-AAAG-A---TACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT--AAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCCcaaagttctagcaatgatagttttgcaattacaataaaagaacaacct
gi|15 : TTG-TC-CACGAA---T--AACTA-A-CAGT-AAAAAAA-AATA-C-TT-TCC-CGG-TTAAAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCT
gi|16 : taatatttaaaaagtttcacgctgtattttggcactctcaagataagggcatgatttataGGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-CC--C-CGGCAAGTAAG------TA-TTG--GGAAATTTCA--AC----TTGT-CCA-AGTACAAAAAA----T-A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAa
gi|17 : gCAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TGC---C-C-CT--C-GGG-AAGTAA--------A-AT---GATAATTT-----C----CTGT--CG-A----AAAAAA--ATT-A--CT-T-G----TC-CAGAACTT-TT
gi|18 : g-AGTGAGA-GCACT-TG----T-C-CC--C-AGGCAAAT-G-------TA-AT---GGAAATTTA---AC----TTGT-CCA-A----AAAAAA----------T-T-C----TC-CAG-ACTT-TTACAgag
gi|19 : aT-GTC-CAG-TTCAAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCgaa
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAATACATTGTA-AT---GATAATTTC---AC----TTGT-TCG-G----AAAAAAA-ATT-A--CT-T-G----TC-------------CACTAG-AAAA-TTTACCATGTCTCTTT-ATCAAAAGTA---TA-AAGTTAATT-TTGTTTTTACA--TAA---------T-AAAAATT---------------------TAC-------AGCCTTTT-CTCAAA-------A---TT----GT--TTTCA-GTTTTTGTTT--GA---TC-C----TGTTtgtt
gi|2 : TT--GT-CCATAATGGATGTGCTATTT---TAACTCC-GGTA-AA----T--AATA-A----AT-CCT--GA-G-C-CCAAATCT------AA-AC--A-ATTAGCATTTGCA-AAT-A-TTGGA-GTCTTTTAACCCNAACAATTAGCA--TTTGCA---A-----AT-A--TTGGAGT-CT---------TAACCCGGTACG--TT-ATTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------A--T--TTCAGTGCATG---CACAG-AC-TAA--CACGTCA-AGCAGCTA----AAA-AAAAA---GT-TAT-----ACCATTG-ATCATGCAG---TCAC-A-CC--T---TGGCGCACA---C-TGGTCA-T-CAGGGTTTAAGTCTGTC-GA-ATA-AGCG-A-GAGGGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTTT--GTT------C--T---CT--TGGATTTT--TTTTG--CAATC--------TCAAAG-A---TACCG-GA-TT-GTAA--TTTTT-CC-ACTTG-TCTCACGGAC--C--AACT--A-C-CT-AAAAAAA-T-TA-CTTT-GTC-CGG--TAAAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|3 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaatta-AGTCAAA-ACACT-TG----T-C--T--C-GGGCAAGTAA-------TA-ATTGGGATAATTCC----CTTGATTGT-CCGAA----AAAAAAA-ATT-A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TT
gi|3 : ---TC-G----TTATTTTTC-CCCGT----ATTCC-TTG-TCCTTTTTCAGCCTGGGACT--------TGCGTGTTTT---GACTGATTTTATCG-CAGTCTTTTGTG-CATGA-T--T-G-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GTTCCATAATGGATGTGCTATTT---TAACTCCAGGCA-AA----TTAA--A-A----AT-CCC--GA-GGC-CCGAATCT------AA-GC--A-ATTAGTTTTTG-A-AAT--TCTGGAAGT---------------------A--TTCAAA---T-----TT-G--T----CT-TT---------TAAGCGGTA-CG--TT-ATT-TCG--CGTATTATAAACA-CAAA-------TTAAT-----A--CA-CATAAACAC-CCCCAAATTTACAGTA--T--TTT-G----TG---CACGGGAC-TAAA-CACGTCA-AGCACCC-----TAA-AAAAA---GT-TTT-----ACCATTG-AT----CAG---TTAC-A-CC--T---CGACGCACA---C-TAGTCATT-CAAG--TTAG----GTCGGATATA-AGCG-A-GA-GGCACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTATT--G-T------T--T---CT--TGGAT-TT--TTTCG--CA-CT--------CCAAAG-A---TACCG-GA-TTGGTAA-TTTTTT-CC-A-TTG-TC-CACGGA---CAAAACTA-A-CGCT-AAAAAAATT-TA-C-TT-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCCattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|4 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgttTCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGT-CCA-A----AAAAAAT-ATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCA-----A---TA-AAGTTACTT-TTGATTTTACA--TAA---------T-AAAAATG---------------------TAC-------AGCCTTTTCCTCAAA-------A---TT----GT--TTTCA-GTTTTTGTTT--GA---TCAC----TTTTTTTTC-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCAGGGACT--------TGCGTTTTTTTTTTACTGA-TT-ATCGTCAGTCCTTTGTG-CATGA-T--TCGTTTTC--GTTTTGTTTTGA-TAA-CTAGCTT--AT-CCA----GGATGT-CTATTT---TAACTCC-GGTA-AA----T---------------------A-G-C-CCGAAGCT------AA-AC--ATAATA-CATTTGCA-AATAATTTGGA-GT---------------------A--CATGCA----------T-G--T----ATATT---------TA--------CG--TT-TTTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------A--T--TTTAG----TG---CACGG-AC-TAA--CACGTCA-ATCGGCT-----AAA-AAAAAT--GT-TAT-----AC----G-AT----CAG---TCAC-A-CC--T---CGTCGCACA---C-TGGTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-GA-AGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTATT--G-T------C--T---CT--TGGA--TT--TTTC-----------------------A---TAC-------TGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTTAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGtgtc
gi|5 : CAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GA--AT------------------------------AAT-TTC-A--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCC----------------------AG--ACTT-TT------ACA--C-----------TGAAAAATT---------------------TACCACGGAAAATCTTGTAC-CAAG-------AGACTT----GAAATTCCGCGTTTCTGGTG--GG---T--------TTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTTT--GACTGATTT-ATCGTCAGTCCTTTGTG-CATGAAT--TCA-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-TCATAATAGATGTGCTATTT---TAACTCC-GGTA-A-----T--A--ATA----AT-CCC--GA-G-T-CCGAATCT------AA-AA--AT--TAGTATTTGCA-AAT-ATT-GGA-GT---------------------A--TTTAAA---AA----TT-GGTT----CT-TT---------TA--------CG--TTCATTGTCG--TGTATGATA--TA-CAAT-------TAAAT---TTA--CA-CATAAA-CCACCCCAA-T-------A--T--TTTAG----TG---CACGG-ACCTAA--CAAGTCA-AGTACCT-----AAA-A--AA---GT-TAT-----ACCATTGAAT----CAG---TCAC-A--C--T---TGGCACACA---T-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-GA-GGCACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTATT--G-T------C--T---GT--TGGA--TT--TTTCG--CAGCT--------CCAAAG-A---TACCG-GATTTGGTAATTTTTCT-CC-CAGTG-TC-CATGGA---C--AA-TA-A-CGCT-AAAAAAA-T-TATC-TT-GTA-CGG-TAAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C--T--C-GG-CAA-TAA-------TA-AT---TAGAATT-C---AC----GTGT-CC--A----AAAAAAT-ATT-A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCTCTTT-ATCA-----ACATTA-AAGT-ACTTATTGATTTAACA--TAA---------T-AAAAATG---------------------TAC-------AGCCTTTTCC--AAA-------A---TT----GT--TT-CA-GTTTT-GTTT--GA---TT-CCACTTTTTTTTTT-CCCGT----TATCC-TTGGTCCTTTT--AGCCAGGGACT--------TGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGTG-CA-AA-TA-TCG-TT-C--GTTTTGTTTTGAATAAACTAGCTT--AT-CCA----GGATGTGCTATTT---TAACTCC-GG-A-AA----T--A--G---------CC---GA--------AATCT------AA-A---ACAAAAACAT--GCA-AAT-ATTTGGA-GT---------------------AAGCATGTA----------T-A--T----TT-TA---------TA--------CG--TT---TGTCGGGCGTAT-ATA--CAACAAA-------TTA------TA--TA-CACAAA----CCCCCAAT-------A--T--TTT-G----TGG--CA-GG-AC-TAA--CACGTCA-ATCGGCT-----AAA-AAAAAAATGT-TAT-----AC------GT----CAG---TCAC-ACCC--T---CGTCGCACA---C-T-GTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-GA-AGCACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTATT--G-T------CTTT---CT--TGGA--TT--TTC------------------------A---TACT--------GTAA-TTTTTT-CC-ACTTG-TCTCACGGA---CA-AACTA-A-CGCTAAAAAAAA-T-TA-C-TT-GTC-CGG-TTATAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|7 : aA-GCACTGTG----T-CACTGTC-GGGCAAGTAA-------TA-AT---GATAATTTC---AC----TTGTGCCGAA----AAAAAAA-ATTAA--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGtt
gi|7 : a-GTTTCTGGTG--GG---TT------TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTT---GACTGATTT--TCGTCAGTCCTTTGTGGCATGA-T--TCAATTTC--GTTTTGTTTCGA-TAAACAAACTT--GT-CCATAATAGATGTGCTATTT---TAACTCC-GGTATAA----T--A--A-A----TC-CC---GA-G-T-CCGAATCT------AA-AA--AT--TAGTATTTGCA-AAT-ATT-GGA-GT---------------------A--TTTAAA---A-----TTTG--T----TC-TT---------TAA-------CG--TT-ATTGTCG--TGTATGATA--TA-CAAAA------TTAAT---TTA--CA-CATAAA-CCACCCCAA-T-------A--T--TTTAG----TG---CACGG-AC-TAA--CAAGTCA-AGTACCT-----AAA-A--AA---GT-TAT-----ACCATTG-AT----CAG---TCAC-A-CC--T---TGGCACACA---T-T-GTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCGAA-GA-GGCACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTATT--G-T------C--T---GT--TGGA--TT--TTTCG--CACTCGTGCAAAGCTAAAAGA---TACCG-GA-TTGGTAATTTTTTTCCC-AGTTG-TC-CATGGA---C---ACTACA-CGCT--AAAAAA-T-TA-C-TT-GTA-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacttttacactgaaaaatttaccacggaaatcttgtaccaagagacttgaaattcgcCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-CT--CAGGGCAAGTAA-------TAGAT---GAAAATTTTCAAAC----TTGT-CAG-A----AAAAA---ATT-A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTAC
gi|8 : ---TT----GT--TTT-----TTTTGTTTTGGAGGTTT-T----TTTTTTTTT-TTCGT----ATTCT-TTT-TCCTTT--CAGC-TAGGACT--------TGCG----TTTTT---TGACT-----------------------GA-T--T----------TTTTGTTTCGA-TAA-CAAAGTT--G--CCAT-ATGGATGTTCTATTT---TAACTCCAAGTA-AA----T--AATA-A----ATCCC---GATG-T-CCAAATCTACATTAAA-AC--A-ATTAGTAATTGCA-AA--ATATGGA-GT---------------------A--CATGTATTTAAAAATTT-G--T----TC-TTTTAAGCCGGTA--------CG--TT-ATTGTCG--CGTATGAAA--TA-CAAAATTAAATTTAAT---TTAACCA-CATAAA-ACACCacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|8 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgAC-A-CCGCT---CG-CGC-CA---CATGGTCA-T-CAAG--TTAG--CTGTC-AATATATAGCG-ATGA-GGCAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTATT--G-T------C--TGGATTAATGGA--TT--TTTCG--CACTC--------C-AAAG-A---TACCG-GA-TTAGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|9 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-TT--C-TTGCAG---------------T---GAAAATTTC---AC----TTGT-CCG-A----AAGAAAA-GTA-A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCTCTCT-CTCT-----C---T----CTCTCTT-TTTTTTTTATAAGTAATCAAAGTCCT-AAAAATGTCAATTTTGTTATTTCAATTTTAG-------AGCCTTTT--TTAAA------------T----GC--TTTGA-GTTTTTCTTT--GA---CC-C----
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111 1111 444444444444 2222222222222222 555555555555555555555555555555 111 22222222222 11111111111 22222222222 1111 1 22222222 1111 111 1 111111 1 1 4444444444444 11111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 1111111 11 2222222 111 1111 111 11 1111111 111 11111 1111 111 1 1 111111 11 22222222222222 111111 11111111111111111 22222222222
lowQualScore : 3 44 2 2 8888 5 77 33 2 1111111 2 999 666 8888 1111 2 5 33 2222 2 33 2 2 6666 2 2 2 0 3 2 2 5 777777777777 5 5 33 5555555555555555 1 999999999999999999999999999999 777 44444444444 33333333333 66 55 00000000000 5 2222 5 5 1 00000000 1 8888 0 2 000 6 3 5 0 5 444444 0 66 0 0 66 4 1 1 777 4 4 4 4 0000000000000 4 44444 55555555555555 4 4 888 4 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222 66 4 66 2 7777 5 5 6666666 8888 66 5 33 0 1 4444444 000 8 2222 555 5 5 33 5 0 2222222 77 555 5 44444 4 5 5 2222 000 5 0 66 888 4 888 0 4 5 5 66 66 5 0 5 5 5 5 5 0 66 4 4 4 4 4 4 66 4 222222 66 777 66 00 55 55 99999999999999 7777 4 4 5 4 4 5 4 8 222222 8 4 44 4 4 4 4 3 3 7 55 7777 99999 00000000000000000 88888888888 3 3 55 55 7 55
lowQualScore : . .. . . .... . .. .. . ....... . ... ... .... .... . . .. .... . .. . . .... . . . . . . . . ............ . . .. ................ . .............................. ... ........... ........... .. .. ........... . .... . . . ........ . .... . . ... . . . . . ...... . .. . . .. . . . ... . . . . ............. . ..... .............. . . ... . . ................................................................................ .. . .. . .... . . ....... .... .. . .. . . ....... ... . .... ... . . .. . . ....... .. ... . ..... . . . .... ... . . .. ... . ... . . . . .. .. . . . . . . . . .. . . . . . . .. . ...... .. ... .. .. .. .. .............. .... . . . . . . . . ...... . . .. . . . . . . . .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 6 22 7 7 3333 3 11 77 7 3333333 7 333 333 1111 3333 7 3 77 7777 9 99 9 9 1111 9 9 9 8 6 0 5 0 888888888888 2 7 77 4444444444444444 0 999999999999999999999999999999 777 99999999999 22222222222 44 55 11111111111 7 1111 7 7 4 77777777 7 1111 1 0 222 2 9 0 1 0 555555 1 99 0 0 11 4 9 8 888 4 4 4 4 6666666666666 4 88888 99999999999999 4 4 222 4 4 88888888888888888888888888888888888888888888888888888888888888888888888888888888 11 4 99 5 9999 0 0 2222222 9999 99 0 11 1 4 3333333 000 4 1111 777 7 7 66 7 7 7777777 99 777 7 33333 3 7 7 1111 000 0 0 99 888 5 888 0 5 0 0 99 99 0 1 0 0 0 0 0 1 11 4 4 4 4 4 4 11 4 888888 11 888 11 66 55 55 55555555555555 7777 0 0 7 0 0 0 0 0 111111 0 0 88 0 0 0 0 6 6 3 00 7777 11111 66666666666666666 22222222222 6 6 00 00 3 00
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCA-----A---TA-AAGTTACTT-TTGNTTTTACA--TAA---------T-AAAAATTT---------------------AC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GT---------------------A------TTTGAAA--TTG--T----NT-TT---------T---------A--------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( family-5017 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---NATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCA-----A---TA-AAGTTACTT-TTGNTTTTACA--TAA---------T-AAAAATNT---------------------AC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GT---------------------A------TTTGNAA--TTG--T----NT-TT---------T---------A--------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACCC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|1 : TCTTGGAA-------A---TTCGCCG---T--TCTCT-TTATTTGTTT--GA---AA-T----TTCTTTTTTATTCGTGGCTATTCCCTTG-TCCTTTTTCAGCCTGAGACTAAAAGTCTTGCGATCTTTTT-----------ATCG-CAGTC---TGTC-CATGA-TGGTCG-TTTCCCGTTTCGTTTTGAATAA-AAAACTCTCGT-C-ATAATGGATGTGCTATTTCATTAACCGC-G-GTAA-AAT--ATTAAACTA--AATCCCGA-GAGACGCCGAATCTA------ACA-CCAAA-ATTAGCATTTGGAGAAT-ATTGGGAA-GT---------------------C------TTTTAAG--CCG-------AG-AT---------A---------A--------CGCTTT-ATTGTCA--CATAGTATA--CAA-C-AAA-------TTAATATCTTA--CATCATAAATACACCCCAAATA------ATTAATTTCG----TGTGCCACGG-AC-TAAACCACGTCAGAGCAGCTTTAT-AAAATAAAAA---ATGTGTCTCTTACCATTG-ATT----CAGACTTCACTATCC--TTAACGGCGGACAAAACATGGTCA-TGCA--------------C-G--ATC-AGCG-A-GAA-GGCA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTG-TTTACCCC--T---CT--TGGA--TTGTTTCCGTCCACCC--------CC-AAAAAGGATACCGCGA-TTGGT-ATTTTTTT-CCGACTTGTTC-CATGAGTACC--AACTATATCGCT-ATAAAA----TA-C-TTCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCC
gi|10 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagaGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---ATTT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCAAAAGTA---TA-AAGTTAATT-TTGTTGTTACA--TAA---------T-AAAAATTT---------------------AC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTT
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C--T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCG-A--AAAAAA---AAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|11 : TTTTGACTGATTT-ATCGTCAGTC-TTTGTG-CATGA-T--TTG-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GC-A-AAT--AAT-----A--AATCCCGA-G---C-CCGAATCTA------A-G-C---A-ATTAGTTTTTGCA-AAT-A-TTGG-A-GT---------------------A------TTTCAAAT-TTG--T----TC-TTTTAAGCCGGT---------A--------CG--TT-ATTGttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|12 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgCAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C--T--C-GGGCAAG-AA-------TA-A----GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTTAATCA-----AAAGTATAAATTACTT-TTGATTTTACA--TAN---------N-NNNNNNNN---------------------NN-------NNNNNNNNNNNNNNNNNNGAGTA---TT----A---TGATTTCA-AATTTTGTTT--
gi|13 : GTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-CC--A-GGACAAGTAA-------T-------GG-G-AATTTC---AC----CTGT-CCG-A--AGAAAAAGTAACT-AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT-TTT-ATTA----------A-AAGTAAC
gi|14 : ACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT--AAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCCcaaagttctagcaatgatagttttgcaattacaataaaagaacaacct
gi|15 : --TTTTGG--CACTC--------TC-AA----GATAAGG-GC-ATG---ATTTAT------A-TTG-TC-CACGAA---T--AACTA-A-CAGT-AAAAAAA-AATA-C-TT-TCC-CGG-TTAAAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCT
gi|16 : taatatttaaaaagtttcacgctgtaGGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-CC--C-CGGCAAGTAAG------TA-TT---GG-GAAATTTCA--AC----TTGT-CCA-AGTACAAAA---AA-T-A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAa
gi|17 : gCAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TGC---C-C-CT--C-GGG-AAGTAA--------A-AT---GA-T-AATTT-----C----CTGT--CG-A--AAAAAA----ATT-A--CT-T-G----TC-CAGAACTT-TT
gi|18 : g-AGTGAGA-GCACT-TG----T-C-CC--C-AGGCAAAT-G-------TA-AT---GG-A-AATTTA---AC----TTGT-CCA-A--AAAAAA------------T-T-C----TC-CAG-ACTT-TTACAgag
gi|19 : aT-GTC-CAG-TTCAAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCgaa
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAATACATTGTA-AT---GA-T-AATTTC---AC----TTGT-TCG-G--AAAAAA---AATT-A--CT-T-G----TC-------------CACTAG-AAAA-TTTACCATGTCTCTTT-ATCAAAAGTA---TA-AAGTTAATT-TTGTTTTTACA--TAA---------T-AAAAATTT---------------------AC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TGTTtgtt
gi|2 : TT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--AAT-----A--AATCCTGA-G---C-CCAAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGG-A-GTCTTTTAACCCNAACAATTAGCA------TTTGCAA--ATA--TTGGAGT-CT---------T---------AACCCGGTACG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTCAGTGCATG---CACAG-AC-TAA--CACGTCA-AGCAGC----TAAAA--AAAAA---GT-TA-----TACCATTG-A-TCATGCAG---TCAC-A-CC--T---TGGCGCAC---AC-TGGTCA-T-CAGGGTTTAAGTCTGTC-GA-ATA-AGCG-A-G-AGGGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTT--TGTT------C--T---CT--TGGATTT--TTTTTG--CAATC--------TC-AAA---GATACCG-GA-TT-GTAA--TTTTT-CC-ACTTG-TCTCACGGAC--C--AACT--A-C-CT-AAAAAAA-T-TA-CTTT-GTC-CGG--TAAAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|3 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaatta-AGTCAAA-ACACT-TG----T-C--T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCGAA--AAAAAA---AATT-A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TT
gi|3 : ---TC-G----TTATTTTTC-CCCGT----ATTCC-TTG-TCCTTTTTCAGCCTGGGACT--------TGCGTGTTTT---GACTGATTTTATCG-CAGTCTTTTGTG-CATGA-T--T-G-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GTTCCATAATGGATGTGCTATT---TTAACTCCAG-GC-A-AATTAA-------A--AATCCCGA-GG--C-CCGAATCTA------A-G-C---A-ATTAGTTTTTG-A-AAT--TCTGG-AAGT---------------------A------TTCAAAT--TTG--T----CT-TT---------T---------AAGCGGTA-CG--TT-ATT-TCG--CGTATTATAAAC-A-C-AAA-------TTAAT-----A--CA-CATAAACAC-CCCCAAATTTACAGTAT---TTT-G----TG---CACGGGAC-TAAA-CACGTCA-AGCACC----C-TAA--AAAAA---GT-TT-----TACCATTG-A-T----CAG---TTAC-A-CC--T---CGACGCAC---AC-TAGTCATT-CAAG--TTAG----GTCGGATATA-AGCG-A-G-A-GGCACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGAT-T--TTTTCG--CA-CT--------CC-AAA---GATACCG-GA-TTGGTAA-TTTTTT-CC-A-TTG-TC-CACGGA---CAAAACTA-A-CGCT-AAAAAAATT-TA-C-TT-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCCattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|4 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgttTCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTT-ATCA-----A---TA-AAGTTACTT-TTGATTTTACA--TAA---------T-AAAAATGT---------------------AC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TCAC----TTTTTTTTC-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCAGGGACT--------TGCGTTTTTTTTTTACTGA-TT-ATCGTCAGTCCTTTGTG-CATGA-T--TCGTTTTC--GTTTTGTTTTGA-TAA-CTAGCTT--AT-CCA----GGATGT-CTATT---TTAACTCC-G-GT-A-AAT--------------------A-G---C-CCGAAGCTA------A-A-C---ATAATA-CATTTGCA-AATAATTTGG-A-GT---------------------A------CATGCA----TG--T----ATATT---------T---------A--------CG--TT-TTTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAT--GT-TA-----TAC----G-A-T----CAG---TCAC-A-CC--T---CGTCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTC--------------------------ATAC-------TGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTTAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGtgtc
gi|5 : CAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-CT--C-GGGCAAGTAA-------TA-AT---GAAT-AATT----------------------------------TC-A--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCC----------------------AG--ACTT-TT------ACA--C-----------TGAAAAATTT---------------------ACCACGGAAAATCTTGTAC-CAAG-------AGACTT----G---AAATTCCGCGTTTCTGGTG--GG---T--------TTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTTT--GACTGATTT-ATCGTCAGTCCTTTGTG-CATGAAT--TCA-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-TCATAATAGATGTGCTATT---TTAACTCC-G-GT-A-A-T--A-------AT-AATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-ATT-GG-A-GT---------------------A------TTTAAAAA-TTGGTT----CT-TT---------T---------A--------CG--TTCATTGTCG--TGTATGATA--T-A-C-AAT-------TAAAT---TTA--CA-CATAAA-CCACCCCAA-T-------AT---TTTAG----TG---CACGG-ACCTAA--CAAGTCA-AGTACC----T-AAA--A--AA---GT-TA-----TACCATTGAA-T----CAG---TCAC-A--C--T---TGGCACAC---AT-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CAGCT--------CC-AAA---GATACCG-GATTTGGTAATTTTTCT-CC-CAGTG-TC-CATGGA---C--AA-TA-A-CGCT-AAAAAAA-T-TATC-TT-GTA-CGG-TAAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C--T--C-GG-CAA-TAA-------TA-AT---TA-G-AATT-C---AC----GTGT-CC--A--AAAAAA---TATT-A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCTCTTT-ATCA-----ACATTA-AAGT-ACTTATTGATTTAACA--TAA---------T-AAAAATGT---------------------AC-------AGCCTTTTCC--AAA-------A---TT----G---T--TT-CA-GTTTT-GTTT--GA---TT-CCACTTTTTTTTTT-CCCGT----TATCC-TTGGTCCTTTT--AGCCAGGGACT--------TGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGTG-CA-AA-TA-TCG-TT-C--GTTTTGTTTTGAATAAACTAGCTT--AT-CCA----GGATGTGCTATT---TTAACTCC-G-G--A-AAT--A-------G------CCGA----------AATCTA------A-AAC---A-AA-AACAT--GCA-AAT-ATTTGG-A-GT---------------------AAG----CATGTA----TA--T----TT-TA---------T---------A--------CG--TT---TGTCGGGCGTAT-ATA--C-AAC-AAA-------TTA------TA--TA-CACAAA----CCCCCAAT-------AT---TTT-G----TGG--CA-GG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAAATGT-TA-----TAC------G-T----CAG---TCAC-ACCC--T---CGTCGCAC---AC-T-GTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------CTTT---CT--TGGA--T--TTTC---------------------------ATACT--------GTAA-TTTTTT-CC-ACTTG-TCTCACGGA---CA-AACTA-A-CGCTAAAAAAAA-T-TA-C-TT-GTC-CGG-TTATAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|7 : aA-GCACTGTG----T-CACTGTC-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGTGCCGAA--AAAAAA---AATTAA--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGtt
gi|7 : aTTTTACA--C-----------TGAAAAATTT---------------------ACCACGGA-AATCTTGTAC-CAAG-------AGACTT----GAAAT--TCGC--GTTTCTGGTG--GG---TT------TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTT---GACTGATTT--TCGTCAGTCCTTTGTGGCATGA-T--TCAATTTC--GTTTTGTTTCGA-TAAACAAACTT--GT-CCATAATAGATGTGCTATT---TTAACTCC-G-GT-ATAAT----------A--AATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-A-TTGG-A-GT---------------------A------TTTAAAAT-TTG--T----TC-TT---------TA--------A--------CG--TT-ATTGTCG--TGTATGATA--T-A-CAAAA-------TTAAT---TTA--CA-CATAAA-CCACCCC-AAT-------AT---TTTAG----TG---CACGG-AC-TAA--CAAGTCA-AGTACC----T---A--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---TGGCACAC---AT-T-GTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCGAA-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CACTCGTGCAAAGCTAAAA---GATACCG-GA-TTGGTAATTTTTTTCCC-AGTTG-TC-CATGGA---C---ACTACA-CGCT--AAAAAA-T-TA-C-TT-GTA-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-CT--CAGGGCAAGTAA-------TAGAT---GA-A-AATTTTCAAAC----TTGT-CAG-A--AAAAA-----ATT-A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTAC
gi|8 : ---TT----G---T--TTT-----TTTTGTTTTGGAGGTTT-T----TTTTTTTTT-TTCGT----ATTCT-TTT-TCCTTT--CAGC-TAGGACT--------TGCG----TTTTT---TGACT-----------------------GA-T--T----------TTTTGTTTCGA-TAA-CAAAGTT--G--CCATA-TGGATGTTCTATT---TTAACTCC-AAGT-A-AAT--A-------ATAAATCCCGATG---T-CCAAATCTACATTAAA-A-C---A-ATTAGTAATTGCA-AA--ATATGG-A-GT---------------------ACATGTATTTAAAAATTTG--T----TC-TT---------TTAAGCCGGTA--------CG--TT-ATTGTCG--CGTATGAAA--T-A-C-AAAATTAAATTTAAT---TTAACCA-CATAAA-ACACCacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|8 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgAC-A-CCGCT---CG-CGC-C---ACATGGTCA-T-CAAG--TTAG--CTGTC-AATATATAGCG-ATG-A-GGCAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--TGGATTAATGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTAGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|9 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-TT--C-TTGCAG---------------T---GA-A-AATTTC---AC----TTGT-CCG-A--AAGAAA---AGTA-A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCTCTCT-CTCT-----C---T----CTCTCTT-TTTTTTTTATAAGTAATCAAAGTCCT-AAAAATGTCAATTTTGTTATTTCAATTTTAG-------AGCCTTTT--TTAAA------------T----G---C--TTTGA-GTTTTTCTTT--GA---CC-C----
Alignments
lowQualScore : 1111111 111111111 88888888888888888888888888888888888888888888888 1 3333333 111 22222222222 11111111111 22222222222 1111 1 22222222 1111 111 1 111111 1 1 333333333333333333 11111 111111 11111 111111 66666666666666666666666666666666666666666 1 1111111 11 2222222 111 1111 111 11 1111111 111 11111 1111 111 1 1 111111 11111 222222222222 111111 11111111111111111 22222222222
lowQualScore : 3 44 2 2 5555 5 999 33 2 1111111 2 999 666 444444444 2 77 33 5555 2 33 2 2 6666 2 2 2 0 3 2 00000000000000000000000000000000000000000000000 5 888 5 5 3 0 77 0 0000000 777 44444444444 33333333333 66 55 00000000000 5 2222 5 5 1 00000000 1 8888 0 2 000 6 3 5 0 5 444444 0 66 0 0 66 4 1 1 777 4 4 4 555555555555555555 4 44444 111111 4 11111 4 4 4 5 3 8 777777 6 33333333333333333333333333333333333333333 66 4 66 2 66 0 5 6666666 8888 66 5 33 0 1 4444444 000 8 2222 555 5 5 33 5 0 2222222 77 555 5 44444 4 5 5 2222 000 5 0 66 888 4 888 0 4 5 5 66 66 5 0 5 5 5 5 5 0 66 4 4 4 4 4 4 66 4 222222 66 777 66 22222 55 777777777777 7777 4 4 5 4 4 5 4 8 222222 8 4 44 4 4 4 4 3 3 7 55 7777 99999 00000000000000000 88888888888 3 3 55 55 7 55
lowQualScore : . .. . . .... . ... .. . ....... . ... ... ......... . .. .. .... . .. . . .... . . . . . . ............................................... . ... . . . . .. . ....... ... ........... ........... .. .. ........... . .... . . . ........ . .... . . ... . . . . . ...... . .. . . .. . . . ... . . . .................. . ..... ...... . ..... . . . . . . ...... . ......................................... .. . .. . .. . . ....... .... .. . .. . . ....... ... . .... ... . . .. . . ....... .. ... . ..... . . . .... ... . . .. ... . ... . . . . .. .. . . . . . . . . .. . . . . . . .. . ...... .. ... .. ..... .. ............ .... . . . . . . . . ...... . . .. . . . . . . . .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 6 22 7 7 7777 3 777 77 7 3333333 7 333 333 444444444 7 99 77 7777 9 99 9 9 1111 9 9 9 8 6 0 55555555555555555555555555555555555555555555555 0 888 2 7 0 2 11 0 6666666 777 99999999999 22222222222 44 55 11111111111 7 1111 7 7 4 77777777 7 1111 1 0 222 2 9 0 1 0 555555 1 99 0 0 11 4 9 8 888 4 4 4 111111111111111111 4 88888 555555 0 00000 0 0 0 7 2 0 000000 4 11111111111111111111111111111111111111111 11 4 99 5 99 0 0 2222222 9999 99 0 11 1 4 3333333 000 4 1111 777 7 7 66 7 7 7777777 99 777 7 33333 3 7 7 1111 000 0 0 99 888 5 888 0 5 0 0 99 99 0 1 0 0 0 0 0 1 11 4 4 4 4 4 4 11 4 888888 11 888 11 55555 55 444444444444 7777 0 0 7 0 0 0 0 0 111111 0 0 88 0 0 0 0 6 6 3 00 7777 11111 66666666666666666 22222222222 6 6 00 00 3 00
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GTA-AA----T--A--A--A----ATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGGA-GTA------TTTNAAA--TTG--TTC-TT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--CA-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( family-5017 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GTA-AA----T--A--A--A----ATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGGA-GTA------TTTGAAA--TTG--TNT-TT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--CA-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|1 : TCTTGGAA-------A---TTCGCCG---T--TCTCT-TTATTTGTTT--GA---AA-T----TTCTTTTTTATTCGTGGCTATTCCCTTG-TCCTTTTTCAGCCTGAGACTAAAAGTCTTGCGATCTTTTT-----------ATCG-CAGTC---TGTC-CATGA-TGGTCG-TTTCCCGTTTCGTTTTGAATAA-AAAACTCTCGT-C-ATAATGGATGTGCTATTTCATTAACCGC-G-GTA-AAATATT--A--A--ACTAAATCCCGA-GAGACGCCGAATCTA------ACA-CCAAA-ATTAGCATTTGGAGAAT-ATTGGGAAGTC------TTTTAAG--CCG---AG-AT---------A---------A-------CGCTTT-ATTGTCA--CATAGTATA--CAAC-AAA-------TTAATATCTTA--CATCATAAATACACCCCAAATA------ATTAATTTCG----TGTGCCACGG-AC-TAAACCACGTCAGAGCAGCTTTAT-AAAATAAAAA---ATGTGTCTCTTACCATTG-ATT----CAGACTTCACTATCC--TTAACGGCGGACAAAACATGGTCA-TGCA--------------C-G--ATC-AGCG-A-GAA-GGCA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTG-TTTACCCC--T---CT--TGGA--TTGTTTCCGTCCACCC--------CC-AAAAAGGATACCGCGA-TTGGT-ATTTTTTT-CCGACTTGTTC-CATGAGTACC--AACTATATCGCT-ATAAAA----TA-C-TTCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCC
gi|10 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagaGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---ATTT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCAAAAGTA-----TA-AA---GTTAATT-TTGTTGTTACATAAT-AAAAATTTAC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTT
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCG-A--AAAAAA---AAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|11 : TTTTGACTGATTT-ATCGTCAGTC-TTTGTG-CATGA-T--TTG-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GCA-AA----T--AATA--A----ATCCCGA-G---C-CCGAATCTA------A-G-C---A-ATTAGTTTTTGCA-AAT-A-TTGGA-GTA------TTTCAAAT-TTG--TTC-TTTTAAGCCGGT---------A-------CG--TT-ATTGttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|12 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgCAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C---T--C-GGGCAAG-AA-------TA-A----GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTTA-------------ATCA-----AAAG--TATAA---ATTACTT-TTGATTTTACATANN-NNNNNNNNNN-------NNNNNNNNNNNNNNNNNNGAGTA---TT----A---TGATTTCA-AATTTTGTTT--
gi|13 : GTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-C-C--A-GGACAAGTAA-------T-------GG-G-AATTTC---AC----CTGT-CCG-A--AGAAAAAGTAACT-AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT---------------TTT--------------ATTA------------A-AA---GTAAC
gi|14 : ACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT--AAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCCcaaagttctagcaatgatagttttgcaattacaataaaagaacaacct
gi|15 : --TTTTGG--CACTC--------TC-AA----GATAAGG-GC-ATG---ATTTAT------A-TTG-TC-CACGAA---T--AACTA-A-CAGT-AAAAAAA-AATA-C-TT-TCC-CGG-TTAAAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCT
gi|16 : taatatttaaaaagtttcacgctgtaGGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-C-C--C-CGGCAAGTAAG------TA-TT---GG-GAAATTTCA--AC----TTGT-CCA-AGTACAAAA---AA-T-A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAa
gi|17 : gCAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TG----C-C-CCT--C-GGG-AAGTAA--------A-AT---GA-T-AATTTC---------CTGT-C---G--AAAAAA---AATT-A--CT-T-G----TC-CAGAACTT-TT
gi|18 : g-AGTGAGA-GCACT-TG----T-C-C-C--C-AGGCAAAT-G-------TA-AT---GG-A-AATTTA---AC----TTGT-CCA-A--AAAAAA------------T-T-C----TC-CAG-ACTT-TTACAgag
gi|19 : aT-GTC-CAG-TTCAAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCgaa
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAATACATTGTA-AT---GA-T-AATTTC---AC----TTGT-TCG-G--AAAAAA---AATT-A--CT-T-G----TC-------------CACTAG-AAAA-TTTACCATGTCT--------------CTTT--------------ATCAAAAGTA-----TA-AA---GTTAATT-TTGTTTTTACATAAT-AAAAATTTAC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TGTTtgtt
gi|2 : TT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GTA-AA----T--AATA--A----ATCCTGA-G---C-CCAAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGGA-GTC------TTTTAAatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|2 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattaAACCCN------A-A-C---A-ATTAGCATTTGCA-AAT-ATT-GGA-GTC------TT--AAC--CCG--G--------------T---------A-------CG--TT-ATTGTCG--CGTATGATA--CA-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTCAGTGCATG---CACAG-AC-TAA--CACGTCA-AGCAGC----TAAAA--AAAAA---GT-TA-----TACCATTG-A-TCATGCAG---TCAC-A-CC--T---TGGCGCAC---AC-TGGTCA-T-CAGGGTTTAAGTCTGTC-GA-ATA-AGCG-A-G-AGGGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTT--TGTT------C--T---CT--TGGATTT--TTTTTG--CAATC--------TC-AAA---GATACCG-GA-TT-GTAA--TTTTT-CC-ACTTG-TCTCACGGAC--C--AACT--A-C-CT-AAAAAAA-T-TA-CTTT-GTC-CGG--TAAAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCcccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|3 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtctttt-AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCGAA--AAAAAA---AATT-A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TT
gi|3 : ---TC-G----TTATTTTTC-CCCGT----ATTCC-TTG-TCCTTTTTCAGCCTGGGACT--------TGCGTGTTTT---GACTGATTTTATCG-CAGTCTTTTGTG-CATGA-T--T-G-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GTTCCATAATGGATGTGCTATTT---TAACTCCAG-GCA-AA----TTAA--A--A----ATCCCGA-GG--C-CCGAATCTA------A-G-C---A-ATTAGTTTTTG-A-AAT--TCTGGAAGTA------TTCAAAT--TTG--TCT-TT---------T---------AAGCGGTACG--TT-ATT-TCG--CGTATTATAAACA-C-AAA-------TTAAT-----A--CA-CATAAACAC-CCCCAAATTTACAGTAT---TTT-G----TG---CACGGGAC-TAAA-CACGTCA-AGCACC----C-TAA--AAAAA---GT-TT-----TACCATTG-A-T----CAG---TTAC-A-CC--T---CGACGCAC---AC-TAGTCATT-CAAG--TTAG----GTCGGATATA-AGCG-A-G-A-GGCACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGAT-T--TTTTCG--CACT---------CC-AAA---GATACCG-GA-TTGGTAA-TTTTTT-CC-A-TTG-TC-CACGGA---CAAAACTA-A-CGCT-AAAAAAATT-TA-C-TT-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCCattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|4 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgttTCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGATTTTACATAAT-AAAAATGTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TCAC----TTTTTTTTC-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCAGGGACT--------TGCGTTTTTTTTTTACTGA-TT-ATCGTCAGTCCTTTGTG-CATGA-T--TCGTTTTC--GTTTTGTTTTGA-TAA-CTAGCTT--AT-CCA----GGATGT-CTATTT---TAACTCC-G-GTA-AA----T-------------------A-G---C-CCGAAGCTA------A-A-C---ATAATA-CATTTGCA-AATAATTTGGA-GTA------CATGCA----TG--TATATT---------T---------A-------CG--TT-TTTGTCG--CGTATGATA--CA-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAT--GT-TA-----TAC----G-A-T----CAG---TCAC-A-CC--T---CGTCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTC--------------------------ATAC-------TGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTTAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGtgtc
gi|5 : CAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GAAT-AATT----------------------------------TC-A--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCC---------------------------------------------------A---G--ACTT-TT------ACAC--TGAAAAATTTACCACGGAAAATCTTGTAC-CAAG-------AGACTT----G---AAATTCCGCGTTTCTGGTG--GG---T--------TTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTTT--GACTGATTT-ATCGTCAGTCCTTTGTG-CATGAAT--TCA-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-TCATAATAGATGTGCTATTT---TAACTCC-G-GTA-A-----T--A--AT-A----ATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-ATT-GGA-GTA------TTTAAAAA-TTGGTTCT-TT---------T---------A-------CG--TTCATTGTCG--TGTATGATA--TA-C-AAT-------TAAAT---TTA--CA-CATAAA-CCACCCCAA-T-------AT---TTTAG----TG---CACGG-ACCTAA--CAAGTCA-AGTACC----T-AAA--A--AA---GT-TA-----TACCATTGAA-T----CAG---TCAC-A--C--T---TGGCACAC---AT-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CAGCT--------CC-AAA---GATACCG-GATTTGGTAATTTTTCT-CC-CAGTG-TC-CATGGA---C--AA-TA-A-CGCT-AAAAAAA-T-TATC-TT-GTA-CGG-TAAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C---T--C-GG-CAA-TAA-------TA-AT---TA-G-AATT-C---AC----GTGT-CC--A--AAAAAA---TATT-A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----ACAT--TA-AA---GT-ACTTATTGATTTAACATAAT-AAAAATGTAC-------AGCCTTTTCC--AAA-------A---TT----G---T--TT-CA-GTTTT-GTTT--GA---TT-CCACTTTTTTTTTT-CCCGT----TATCC-TTGGTCCTTTT--AGCCAGGGACT--------TGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGTG-CA-AA-TA-TCG-TT-C--GTTTTGTTTTGAATAAACTAGCTT--AT-CCA----GGATGTGCTATTT---TAACTCC-G-G-A-AA----T--A--G----------CCGA----------AATCTA------A-AAC---A-AA-AACAT--GCA-AAT-ATTTGGA-GTAAG----CATGTA----TA--TTT-TA---------T---------A-------CG--TT---TGTCGGGCGTAT-ATA--CAAC-AAA-------TTA------TA--TA-CACAAA----CCCCCAAT-------AT---TTT-G----TGG--CA-GG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAAATGT-TA-----TAC------G-T----CAG---TCAC-ACCC--T---CGTCGCAC---AC-T-GTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------CTTT---CT--TGGA-----TTTTCA--TACT--------------------------------GTAA-TTTTTT-CC-ACTTG-TCTCACGGA---CA-AACTA-A-CGCTAAAAAAAA-T-TA-C-TT-GTC-CGG-TTATAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|7 : aA-GCACTGTG----T-CAC-TGTC-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGTGCCGAA--AAAAAA---AATTAA--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGtt
gi|7 : aTTTTACAC--TGAAAAATTTACCACGGA-AATCTTGTAC-CAAG-------AGACTT----GAAAT--TCGC--GTTTCTGGTG--GG---TT------TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTT---GACTGATTT--TCGTCAGTCCTTTGTGGCATGA-T--TCAATTTC--GTTTTGTTTCGA-TAAACAAACTT--GT-CCATAATAGATGTGCTATTT---TAACTCC-G-GTATAA----T-----A--A----ATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-A-TTGGA-GTA------TTTAAAAT-TTG--TTC-TT---------TA--------A-------CG--TT-ATTGTCG--TGTATGATA--TA-CAAAA-------TTAAT---TTA--CA-CATAAA-CCACCCC-AAT-------AT---TTTAG----TG---CACGG-AC-TAA--CAAGTCA-AGTACC----T---A--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---TGGCACAC---AT-T-GTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCGAA-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CACTCGTGCAAAGCTAAAA---GATACCG-GA-TTGGTAATTTTTTTCCC-AGTTG-TC-CATGGA---C---ACTACA-CGCT--AAAAAA-T-TA-C-TT-GTA-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-C-T--CAGGGCAAGTAA-------TAGAT---GA-A-AATTTTCAAAC----TTGT-C---A--GAAAAA---AATT-A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTAC
gi|8 : ---TT----G---T--TTT-----TTTTGTTTTGGAGGTTT-T----TTTTTTTTT-TTCGT----ATTCT-TTT-TCCTTT--CAGC-TAGGACT--------TGCG----TTTTT---TGACT-----------------------GA-T--T----------TTTTGTTTCGA-TAA-CAAAGTT--G--CCATA-TGGATGTTCTATTT---TAACTCC-AAGTA-AA----T--A--ATAA----ATCCCGATG---T-CCAAATCTACATTAAA-A-C---A-ATTAGTAATTGCA-AA--ATATGGA-GTACATGTATTTAAAAATTTG--TTC-TT---------TTAAGCCGGTA-------CG--TT-ATTGTCG--CGTATGAAA--TA-C-AAAATTAAATTTAAT---TTAACCA-CATAAA-ACACCacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|8 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgAC-A-CCGCT---CG-CGC-C---ACATGGTCA-T-CAAG--TTAG--CTGTC-AATATATAGCG-ATG-A-GGCAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--TGGATTAATGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTAGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|9 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-T-T--C-TTGCAG---------------T---GA-A-AATTTC---AC----TTGT-CCG-A--AAGAAA---AGTA-A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCTCTCTCTCTCTCTCTCTTTTTTTTTTATAAGTAATCA-----AAGTCCTA-AAAATGTCAATT-TTGTTATTTCA--AT------TTTAG-------AGCCTTTT--TTAAA------------T----G---C--TTTGA-GTTTTTCTTT--GA---CC-C----
Alignments
lowQualScore : 1111111 111111111 88888888888888888888888888888888888888888888888 1 3333333 111 22222222222 11111111111 22222222222 1111 1 22222222 1111 111 1 111111 1 1 4444444444444 11111 111111 11111 1 111111 6666666666666666666666666666666666666666666 1111111 11 2222222 111 1111 111 11 1111111 111 11111 1111 111 1 1 111111 11111 222222222222 111111 11111111111111111 22222222222
lowQualScore : 3 44 2 2 5555 5 999 33 2 1111111 2 999 666 444444444 2 77 33 5555 2 33 2 2 6666 2 2 2 0 3 2 00000000000000000000000000000000000000000000000 5 888 5 5 3 0 77 0 0000000 777 44444444444 33333333333 66 55 00000000000 5 2222 5 5 1 00000000 1 8888 0 2 000 6 3 5 0 5 444444 0 66 0 0 66 4 1 1 777 4 4 4 4 0000000000000 4 44444 111111 4 11111 4 4 4 0 4 4 111111 2 1111111111111111111111111111111111111111111 66 4 66 2 7777 5 5 6666666 8888 66 5 33 0 1 4444444 000 8 2222 555 5 5 33 5 0 2222222 77 555 5 44444 4 5 5 2222 000 5 0 66 888 4 888 0 4 5 5 66 66 5 0 5 5 5 5 5 0 66 4 4 4 4 4 4 66 4 222222 66 777 66 22222 55 777777777777 7777 4 4 5 4 4 5 4 8 222222 8 4 44 4 4 4 4 3 3 7 55 7777 99999 00000000000000000 88888888888 3 3 55 55 7 55
lowQualScore : . .. . . .... . ... .. . ....... . ... ... ......... . .. .. .... . .. . . .... . . . . . . ............................................... . ... . . . . .. . ....... ... ........... ........... .. .. ........... . .... . . . ........ . .... . . ... . . . . . ...... . .. . . .. . . . ... . . . . ............. . ..... ...... . ..... . . . . . . ...... . ........................................... .. . .. . .... . . ....... .... .. . .. . . ....... ... . .... ... . . .. . . ....... .. ... . ..... . . . .... ... . . .. ... . ... . . . . .. .. . . . . . . . . .. . . . . . . .. . ...... .. ... .. ..... .. ............ .... . . . . . . . . ...... . . .. . . . . . . . .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 6 22 7 7 7777 3 777 77 7 3333333 7 333 333 444444444 7 99 77 7777 9 99 9 9 1111 9 9 9 8 6 0 55555555555555555555555555555555555555555555555 0 888 2 7 0 2 11 0 6666666 777 99999999999 22222222222 44 55 11111111111 7 1111 7 7 4 77777777 7 1111 1 0 222 2 9 0 1 0 555555 1 99 0 0 11 4 9 8 888 4 4 4 4 6666666666666 4 88888 555555 0 00000 0 0 0 6 0 0 555555 4 6666666666666666666666666666666666666666666 11 4 99 5 9999 0 0 2222222 9999 99 0 11 1 4 3333333 000 4 1111 777 7 7 66 7 7 7777777 99 777 7 33333 3 7 7 1111 000 0 0 99 888 5 888 0 5 0 0 99 99 0 1 0 0 0 0 0 1 11 4 4 4 4 4 4 11 4 888888 11 888 11 55555 55 444444444444 7777 0 0 7 0 0 0 0 0 111111 0 0 88 0 0 0 0 6 6 3 00 7777 11111 66666666666666666 22222222222 6 6 00 00 3 00
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GTA------TTTAAAA--T---TG-T-TCTT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( family-5017 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GTA------TTTNAAA--T---TG-T-TCTT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|1 : TCTTGGAA-------A---TTCGCCG---T--TCTCT-TTATTTGTTT--GA---AA-T----TTCTTTTTTATTCGTGGCTATTCCCTTG-TCCTTTTTCAGCCTGAGACTAAAAGTCTTGCGATCTTTTT-----------ATCG-CAGTC---TGTC-CATGA-TGGTCG-TTTCCCGTTTCGTTTTGAATAA-AAAACTCTCGT-C-ATAATGGATGTGCTATTTCATTAACCGC-G-GTAA-AAT--ATTAAACTA--AATCCCGA-GAGACGCCGAATCTA------ACA-CCAAA-ATTAGCATTTGGAGAAT-ATTGGGAA-GTC------TTTTAAG--C---CG-A-GA-T---------A---------A-------CGCTTT-ATTGTCA--CATAGTATA--CAA-C-AAA-------TTAATATCTTA--CATCATAAATACACCCCAAATA------ATTAATTTCG----TGTGCCACGG-AC-TAAACCACGTCAGAGCAGCTTTAT-AAAATAAAAA---ATGTGTCTCTTACCATTG-ATT----CAGACTTCACTATCC--TTAACGGCGGACAAAACATGGTCA-TGCA--------------C-G--ATC-AGCG-A-GAA-GGCA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTG-TTTACCCC--T---CT--TGGA--TTGTTTCCGTCCACCC--------CC-AAAAAGGATACCGCGA-TTGGT-ATTTTTTT-CCGACTTGTTC-CATGAGTACC--AACTATATCGCT-ATAAAA----TA-C-TTCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCC
gi|10 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagaGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---ATTT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCAAAAGTA-----TA-AA---GTTAATT-TTGTTGTTACATAAT-AAAAATTTAC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTT
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCG-A--AAAAAA---AAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|11 : TTTTGACTGATTT-ATCGTCAGTC-TTTGTG-CATGA-T--TTG-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GC-A-AAT--AAT-----A--AATCCCGA-G---C-CCGAATCTA------A-G-C---A-ATTAGTTTTTGCA-AAT-A-TTGG-A-GTA------TTTCAAAT-T---TG-T-TCTTTTAAGCCGGT---------A-------CG--TT-ATTGttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|12 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgCAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C---T--C-GGGCAAG-AA-------TA-A----GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTTA-------------ATCA-----AAAG--TATAA---ATTACTT-TTGATTTTACATANN-NNNNNNNNNN-------NNNNNNNNNNNNNNNNNNGAGTA---TT----A---TGATTTCA-AATTTTGTTT--
gi|13 : GTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-C-C--A-GGACAAGTAA-------T-------GG-G-AATTTC---AC----CTGT-CCG-A--AGAAAAAGTAACT-AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT---------------TTT--------------ATTA------------A-AA---GTAAC
gi|14 : ACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT--AAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCCcaaagttctagcaatgatagttttgcaattacaataaaagaacaacct
gi|15 : --TTTTGG--CACTC--------TC-AA----GATAAGG-GC-ATG---ATTTAT------A-TTG-TC-CACGAA---T--AACTA-A-CAGT-AAAAAAA-AATA-C-TT-TCC-CGG-TTAAAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCT
gi|16 : taatatttaaaaagtttcacgctgtaGGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-C-C--C-CGGCAAGTAAG------TA-TT---GG-GAAATTTCA--AC----TTGT-CCA-AGTACAAAA---AA-T-A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAa
gi|17 : gCAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TG----C-C-CCT--C-GGG-AAGTAA--------A-AT---GA-T-AATTTC---------CTGT-C---G--AAAAAA---AATT-A--CT-T-G----TC-CAGAACTT-TT
gi|18 : g-AGTGAGA-GCACT-TG----T-C-C-C--C-AGGCAAAT-G-------TA-AT---GG-A-AATTTA---AC----TTGT-CCA-A--AAAAAA------------T-T-C----TC-CAG-ACTT-TTACAgag
gi|19 : aT-GTC-CAG-TTCAAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCgaa
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAATACATTGTA-AT---GA-T-AATTTC---AC----TTGT-TCG-G--AAAAAA---AATT-A--CT-T-G----TC-------------CACTAG-AAAA-TTTACCATGTCT--------------CTTT--------------ATCAAAAGTA-----TA-AA---GTTAATT-TTGTTTTTACATAAT-AAAAATTTAC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TGTTtgtt
gi|2 : TT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--AAT-----A--AATCCTGA-G---C-CCAAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGG-A-GTC------TTTTAAatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|2 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattaAACCCN------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGG-A-GTC------TT--AA----------C-CCGG---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTCAGTGCATG---CACAG-AC-TAA--CACGTCA-AGCAGC----TAAAA--AAAAA---GT-TA-----TACCATTG-A-TCATGCAG---TCAC-A-CC--T---TGGCGCAC---AC-TGGTCA-T-CAGGGTTTAAGTCTGTC-GA-ATA-AGCG-A-G-AGGGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTT--TGTT------C--T---CT--TGGATTT--TTTTTG--CAATC--------TC-AAA---GATACCG-GA-TT-GTAA--TTTTT-CC-ACTTG-TCTCACGGAC--C--AACT--A-C-CT-AAAAAAA-T-TA-CTTT-GTC-CGG--TAAAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCcccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|3 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtctttt-AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCGAA--AAAAAA---AATT-A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TT
gi|3 : ---TC-G----TTATTTTTC-CCCGT----ATTCC-TTG-TCCTTTTTCAGCCTGGGACT--------TGCGTGTTTT---GACTGATTTTATCG-CAGTCTTTTGTG-CATGA-T--T-G-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GTTCCATAATGGATGTGCTATT---TTAACTCCAG-GC-A-AATTAA-------A--AATCCCGA-GG--C-CCGAATCTA------A-G-C---A-ATTAGTTTTTG-A-AAT--TCTGG-AAGTA------TTCAAAT--T---TG-T-CTTT---------T---------AAGCGGTACG--TT-ATT-TCG--CGTATTATAAAC-A-C-AAA-------TTAAT-----A--CA-CATAAACAC-CCCCAAATTTACAGTAT---TTT-G----TG---CACGGGAC-TAAA-CACGTCA-AGCACC----C-TAA--AAAAA---GT-TT-----TACCATTG-A-T----CAG---TTAC-A-CC--T---CGACGCAC---AC-TAGTCATT-CAAG--TTAG----GTCGGATATA-AGCG-A-G-A-GGCACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGAT-T--TTTTCG--CACT---------CC-AAA---GATACCG-GA-TTGGTAA-TTTTTT-CC-A-TTG-TC-CACGGA---CAAAACTA-A-CGCT-AAAAAAATT-TA-C-TT-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCCattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|4 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgttTCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGATTTTACATAAT-AAAAATGTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TCAC----TTTTTTTTC-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCAGGGACT--------TGCGTTTTTTTTTTACTGA-TT-ATCGTCAGTCCTTTGTG-CATGA-T--TCGTTTTC--GTTTTGTTTTGA-TAA-CTAGCTT--AT-CCA----GGATGT-CTATT---TTAACTCC-G-GT-A-AAT--------------------A-G---C-CCGAAGCTA------A-A-C---ATAATA-CATTTGCA-AATAATTTGG-A-GTA------CATGCA-------TG-TATATT---------T---------A-------CG--TT-TTTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAT--GT-TA-----TAC----G-A-T----CAG---TCAC-A-CC--T---CGTCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTC--------------------------ATAC-------TGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTTAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGtgtc
gi|5 : CAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GAAT-AATT----------------------------------TC-A--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCC---------------------------------------------------A---G--ACTT-TT------ACAC--TGAAAAATTTACCACGGAAAATCTTGTAC-CAAG-------AGACTT----G---AAATTCCGCGTTTCTGGTG--GG---T--------TTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTTT--GACTGATTT-ATCGTCAGTCCTTTGTG-CATGAAT--TCA-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-TCATAATAGATGTGCTATT---TTAACTCC-G-GT-A-A-T--A-------AT-AATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-ATT-GG-A-GTA------TTTAAAAA-T---TGGT-TCTT---------TT--------A-------CG--TTCATTGTCG--TGTATGATA--T-A-C-AAT-------TAAAT---TTA--CA-CATAAA-CCACCCCAA-T-------AT---TTTAG----TG---CACGG-ACCTAA--CAAGTCA-AGTACC----T-AAA--A--AA---GT-TA-----TACCATTGAA-T----CAG---TCAC-A--C--T---TGGCACAC---AT-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CAGCT--------CC-AAA---GATACCG-GATTTGGTAATTTTTCT-CC-CAGTG-TC-CATGGA---C--AA-TA-A-CGCT-AAAAAAA-T-TATC-TT-GTA-CGG-TAAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C---T--C-GG-CAA-TAA-------TA-AT---TA-G-AATT-C---AC----GTGT-CC--A--AAAAAA---TATT-A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----ACAT--TA-AA---GT-ACTTATTGATTTAACATAAT-AAAAATGTAC-------AGCCTTTTCC--AAA-------A---TT----G---T--TT-CA-GTTTT-GTTT--GA---TT-CCACTTTTTTTTTT-CCCGT----TATCC-TTGGTCCTTTT--AGCCAGGGACT--------TGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGTG-CA-AA-TA-TCG-TT-C--GTTTTGTTTTGAATAAACTAGCTT--AT-CCA----GGATGTGCTATT---TTAACTCC-G-G--A-AAT--A-------G------CCGA----------AATCTA------A-AAC---A-AA-AACAT--GCA-AAT-ATTTGG-A-GTA---------AGCA--TGTATA-T-TTTA---------T---------A-------CG--TT---TGTCGGGCGTAT-ATA--C-AAC-AAA-------TTA------TA--TA-CACAAA----CCCCCAAT-------AT---TTT-G----TGG--CA-GG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAAATGT-TA-----TAC------G-T----CAG---TCAC-ACCC--T---CGTCGCAC---AC-T-GTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------CTTT---CT--TGGA-----TTTTCA--TACT--------------------------------GTAA-TTTTTT-CC-ACTTG-TCTCACGGA---CA-AACTA-A-CGCTAAAAAAAA-T-TA-C-TT-GTC-CGG-TTATAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|7 : aA-GCACTGTG----T-CAC-TGTC-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGTGCCGAA--AAAAAA---AATTAA--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGtt
gi|7 : aTTTTACAC--TGAAAAATTTACCACGGA-AATCTTGTAC-CAAG-------AGACTT----GAAAT--TCGC--GTTTCTGGTG--GG---TT------TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTT---GACTGATTT--TCGTCAGTCCTTTGTGGCATGA-T--TCAATTTC--GTTTTGTTTCGA-TAAACAAACTT--GT-CCATAATAGATGTGCTATT---TTAACTCC-G-GT-ATAAT----------A--AATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-A-TTGG-A-GTA------TTTAAAAT-T---TG-T-TCTT---------TA--------A-------CG--TT-ATTGTCG--TGTATGATA--T-A-CAAAA-------TTAAT---TTA--CA-CATAAA-CCACCCC-AAT-------AT---TTTAG----TG---CACGG-AC-TAA--CAAGTCA-AGTACC----T---A--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---TGGCACAC---AT-T-GTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCGAA-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CACTCGTGCAAAGCTAAAA---GATACCG-GA-TTGGTAATTTTTTTCCC-AGTTG-TC-CATGGA---C---ACTACA-CGCT--AAAAAA-T-TA-C-TT-GTA-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-C-T--CAGGGCAAGTAA-------TAGAT---GA-A-AATTTTCAAAC----TTGT-C---A--GAAAAA---AATT-A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTAC
gi|8 : ---TT----G---T--TTT-----TTTTGTTTTGGAGGTTT-T----TTTTTTTTT-TTCGT----ATTCT-TTT-TCCTTT--CAGC-TAGGACT--------TGCG----TTTTT---TGACT-----------------------GA-T--T----------TTTTGTTTCGA-TAA-CAAAGTT--G--CCATA-TGGATGTTCTATT---TTAACTCC-AAGT-A-AAT--A-------ATAAATCCCGATG---T-CCAAATCTACATTAAA-A-C---A-ATTAGTAATTGCA-AA--ATATGG-A-GTACATGTATTTAAAAATT---TG-T-TCTT---------TTAAGCCGGTA-------CG--TT-ATTGTCG--CGTATGAAA--T-A-C-AAAATTAAATTTAAT---TTAACCA-CATAAA-ACACCacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|8 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgAC-A-CCGCT---CG-CGC-C---ACATGGTCA-T-CAAG--TTAG--CTGTC-AATATATAGCG-ATG-A-GGCAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--TGGATTAATGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTAGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|9 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-T-T--C-TTGCAG---------------T---GA-A-AATTTC---AC----TTGT-CCG-A--AAGAAA---AGTA-A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCTCTCTCTCTCTCTCTCTTTTTTTTTTATAAGTAATCA-----AAGTCCTA-AAAATGTCAATT-TTGTTATTTCA--AT------TTTAG-------AGCCTTTT--TTAAA------------T----G---C--TTTGA-GTTTTTCTTT--GA---CC-C----
Alignments
lowQualScore : 1111111 111111111 88888888888888888888888888888888888888888888888 1 3333333 111 22222222222 11111111111 22222222222 1111 1 22222222 1111 111 1 111111 1 1 4444444444444 11111 111111 11111 1 1111111 5555555555555555555555555555555555555555555 1111111 11 2222222 111 1111 111 11 1111111 111 11111 1111 111 1 1 111111 11111 222222222222 111111 11111111111111111 22222222222
lowQualScore : 3 44 2 2 5555 5 999 33 2 1111111 2 999 666 444444444 2 77 33 5555 2 33 2 2 6666 2 2 2 0 3 2 00000000000000000000000000000000000000000000000 5 888 5 5 3 0 77 0 0000000 777 44444444444 33333333333 66 55 00000000000 5 2222 5 5 1 00000000 1 8888 0 2 000 6 3 5 0 5 444444 0 66 0 0 66 4 1 1 777 4 4 4 4 0000000000000 4 44444 111111 4 11111 4 4 4 0 4 4 2222222 0 8888888888888888888888888888888888888888888 66 4 66 2 7777 5 5 6666666 8888 66 5 33 0 1 4444444 000 8 2222 555 5 5 33 5 0 2222222 77 555 5 44444 4 5 5 2222 000 5 0 66 888 4 888 0 4 5 5 66 66 5 0 5 5 5 5 5 0 66 4 4 4 4 4 4 66 4 222222 66 777 66 22222 55 777777777777 7777 4 4 5 4 4 5 4 8 222222 8 4 44 4 4 4 4 3 3 7 55 7777 99999 00000000000000000 88888888888 3 3 55 55 7 55
lowQualScore : . .. . . .... . ... .. . ....... . ... ... ......... . .. .. .... . .. . . .... . . . . . . ............................................... . ... . . . . .. . ....... ... ........... ........... .. .. ........... . .... . . . ........ . .... . . ... . . . . . ...... . .. . . .. . . . ... . . . . ............. . ..... ...... . ..... . . . . . . ....... . ........................................... .. . .. . .... . . ....... .... .. . .. . . ....... ... . .... ... . . .. . . ....... .. ... . ..... . . . .... ... . . .. ... . ... . . . . .. .. . . . . . . . . .. . . . . . . .. . ...... .. ... .. ..... .. ............ .... . . . . . . . . ...... . . .. . . . . . . . .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 6 22 7 7 7777 3 777 77 7 3333333 7 333 333 444444444 7 99 77 7777 9 99 9 9 1111 9 9 9 8 6 0 55555555555555555555555555555555555555555555555 0 888 2 7 0 2 11 0 6666666 777 99999999999 22222222222 44 55 11111111111 7 1111 7 7 4 77777777 7 1111 1 0 222 2 9 0 1 0 555555 1 99 0 0 11 4 9 8 888 4 4 4 4 6666666666666 4 88888 555555 0 00000 0 0 0 6 0 0 2222222 1 8888888888888888888888888888888888888888888 11 4 99 5 9999 0 0 2222222 9999 99 0 11 1 4 3333333 000 4 1111 777 7 7 66 7 7 7777777 99 777 7 33333 3 7 7 1111 000 0 0 99 888 5 888 0 5 0 0 99 99 0 1 0 0 0 0 0 1 11 4 4 4 4 4 4 11 4 888888 11 888 11 55555 55 444444444444 7777 0 0 7 0 0 0 0 0 111111 0 0 88 0 0 0 0 6 6 3 00 7777 11111 66666666666666666 22222222222 6 6 00 00 3 00
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GTA------TTTAAAA--T---TG-T-TCTT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( family-5017 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GTA------TTTAAAA--T---TG-T-TCTT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|1 : TCTTGGAA-------A---TTCGCCG---T--TCTCT-TTATTTGTTT--GA---AA-T----TTCTTTTTTATTCGTGGCTATTCCCTTG-TCCTTTTTCAGCCTGAGACTAAAAGTCTTGCGATCTTTTT-----------ATCG-CAGTC---TGTC-CATGA-TGGTCG-TTTCCCGTTTCGTTTTGAATAA-AAAACTCTCGT-C-ATAATGGATGTGCTATTTCATTAACCGC-G-GTAA-AAT--ATTAAACTA--AATCCCGA-GAGACGCCGAATCTA------ACA-CCAAA-ATTAGCATTTGGAGAAT-ATTGGGAA-GTC------TTTTAAG--C---CG-A-GA-T---------A---------A-------CGCTTT-ATTGTCA--CATAGTATA--CAA-C-AAA-------TTAATATCTTA--CATCATAAATACACCCCAAATA------ATTAATTTCG----TGTGCCACGG-AC-TAAACCACGTCAGAGCAGCTTTAT-AAAATAAAAA---ATGTGTCTCTTACCATTG-ATT----CAGACTTCACTATCC--TTAACGGCGGACAAAACATGGTCA-TGCA--------------C-G--ATC-AGCG-A-GAA-GGCA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTG-TTTACCCC--T---CT--TGGA--TTGTTTCCGTCCACCC--------CC-AAAAAGGATACCGCGA-TTGGT-ATTTTTTT-CCGACTTGTTC-CATGAGTACC--AACTATATCGCT-ATAAAA----TA-C-TTCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCC
gi|10 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagaGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---ATTT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCAAAAGTA-----TA-AA---GTTAATT-TTGTTGTTACATAAT-AAAAATTTAC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTT
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCG-A--AAAAAA---AAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|11 : TTTTGACTGATTT-ATCGTCAGTC-TTTGTG-CATGA-T--TTG-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GC-A-AAT--AAT-----A--AATCCCGA-G---C-CCGAATCTA------A-G-C---A-ATTAGTTTTTGCA-AAT-A-TTGG-A-GTA------TTTCAAAT-T---TG-T-TCTTTTAAGCCGGT---------A-------CG--TT-ATTGttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|12 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgCAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C---T--C-GGGCAAG-AA-------TA-A----GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTTA-------------ATCA-----AAAG--TATAA---ATTACTT-TTGATTTTACATANN-NNNNNNNNNN-------NNNNNNNNNNNNNNNNNNGAGTA---TT----A---TGATTTCA-AATTTTGTTT--
gi|13 : GTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-C-C--A-GGACAAGTAA-------T-------GG-G-AATTTC---AC----CTGT-CCG-A--AGAAAAAGTAACT-AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT---------------TTT--------------ATTA------------A-AA---GTAAC
gi|14 : ACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT--AAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCCcaaagttctagcaatgatagttttgcaattacaataaaagaacaacct
gi|15 : --TTTTGG--CACTC--------TC-AA----GATAAGG-GC-ATG---ATTTAT------A-TTG-TC-CACGAA---T--AACTA-A-CAGT-AAAAAAA-AATA-C-TT-TCC-CGG-TTAAAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCT
gi|16 : taatatttaaaaagtttcacgctgtaGGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-C-C--C-CGGCAAGTAAG------TA-TT---GG-GAAATTTCA--AC----TTGT-CCA-AGTACAAAA---AA-T-A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAa
gi|17 : gCAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TG----C-C-CCT--C-GGG-AAGTAA--------A-AT---GA-T-AATTTC---------CTGT-C---G--AAAAAA---AATT-A--CT-T-G----TC-CAGAACTT-TT
gi|18 : g-AGTGAGA-GCACT-TG----T-C-C-C--C-AGGCAAAT-G-------TA-AT---GG-A-AATTTA---AC----TTGT-CCA-A--AAAAAA------------T-T-C----TC-CAG-ACTT-TTACAgag
gi|19 : aT-GTC-CAG-TTCAAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCgaa
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAATACATTGTA-AT---GA-T-AATTTC---AC----TTGT-TCG-G--AAAAAA---AATT-A--CT-T-G----TC-------------CACTAG-AAAA-TTTACCATGTCT--------------CTTT--------------ATCAAAAGTA-----TA-AA---GTTAATT-TTGTTTTTACATAAT-AAAAATTTAC-------AGCCTTTT-CTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TGTTtgtt
gi|2 : TT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--AAT-----A--AATCCTGA-G---C-CCAAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGG-A-GTC------TTTTAAatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|2 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattaAACCCN------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGG-A-GT-------CTTAA-----------C-CCGG---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTCAGTGCATG---CACAG-AC-TAA--CACGTCA-AGCAGC----TAAAA--AAAAA---GT-TA-----TACCATTG-A-TCATGCAG---TCAC-A-CC--T---TGGCGCAC---AC-TGGTCA-T-CAGGGTTTAAGTCTGTC-GA-ATA-AGCG-A-G-AGGGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTT--TGTT------C--T---CT--TGGATTT--TTTTTG--CAATC--------TC-AAA---GATACCG-GA-TT-GTAA--TTTTT-CC-ACTTG-TCTCACGGAC--C--AACT--A-C-CT-AAAAAAA-T-TA-CTTT-GTC-CGG--TAAAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCcccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|3 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtctttt-AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-------TA-ATTGGGA-T-AATTCC----CTTGATTGT-CCGAA--AAAAAA---AATT-A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TT
gi|3 : ---TC-G----TTATTTTTC-CCCGT----ATTCC-TTG-TCCTTTTTCAGCCTGGGACT--------TGCGTGTTTT---GACTGATTTTATCG-CAGTCTTTTGTG-CATGA-T--T-G-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GTTCCATAATGGATGTGCTATT---TTAACTCCAG-GC-A-AATTAA-------A--AATCCCGA-GG--C-CCGAATCTA------A-G-C---A-ATTAGTTTTTG-A-AAT--TCTGG-AAGTA------TTCAAAT--T---TG-T-CTTT---------T---------AAGCGGTACG--TT-ATT-TCG--CGTATTATAAAC-A-C-AAA-------TTAAT-----A--CA-CATAAACAC-CCCCAAATTTACAGTAT---TTT-G----TG---CACGGGAC-TAAA-CACGTCA-AGCACC----C-TAA--AAAAA---GT-TT-----TACCATTG-A-T----CAG---TTAC-A-CC--T---CGACGCAC---AC-TAGTCATT-CAAG--TTAG----GTCGGATATA-AGCG-A-G-A-GGCACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGAT-T--TTTTCG--CACT---------CC-AAA---GATACCG-GA-TTGGTAA-TTTTTT-CC-A-TTG-TC-CACGGA---CAAAACTA-A-CGCT-AAAAAAATT-TA-C-TT-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCCattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|4 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgttTCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGATTTTACATAAT-AAAAATGTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TCAC----TTTTTTTTC-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCAGGGACT--------TGCGTTTTTTTTTTACTGA-TT-ATCGTCAGTCCTTTGTG-CATGA-T--TCGTTTTC--GTTTTGTTTTGA-TAA-CTAGCTT--AT-CCA----GGATGT-CTATT---TTAACTCC-G-GT-A-AAT--------------------A-G---C-CCGAAGCTA------A-A-C---ATAATA-CATTTGCA-AATAATTTGG-A-GTA------CATGCA-------TG-TATATT---------T---------A-------CG--TT-TTTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAT--GT-TA-----TAC----G-A-T----CAG---TCAC-A-CC--T---CGTCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTC--------------------------ATAC-------TGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTTAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGtgtc
gi|5 : CAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GAAT-AATT----------------------------------TC-A--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCC---------------------------------------------------A---G--ACTT-TT------ACAC--TGAAAAATTTACCACGGAAAATCTTGTAC-CAAG-------AGACTT----G---AAATTCCGCGTTTCTGGTG--GG---T--------TTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTTT--GACTGATTT-ATCGTCAGTCCTTTGTG-CATGAAT--TCA-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-TCATAATAGATGTGCTATT---TTAACTCC-G-GT-A-A-T--A-------AT-AATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-ATT-GG-A-GTA------TTTAAAAA-T---TGGT-TCTT---------TT--------A-------CG--TTCATTGTCG--TGTATGATA--T-A-C-AAT-------TAAAT---TTA--CA-CATAAA-CCACCCCAA-T-------AT---TTTAG----TG---CACGG-ACCTAA--CAAGTCA-AGTACC----T-AAA--A--AA---GT-TA-----TACCATTGAA-T----CAG---TCAC-A--C--T---TGGCACAC---AT-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CAGCT--------CC-AAA---GATACCG-GATTTGGTAATTTTTCT-CC-CAGTG-TC-CATGGA---C--AA-TA-A-CGCT-AAAAAAA-T-TATC-TT-GTA-CGG-TAAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C---T--C-GG-CAA-TAA-------TA-AT---TA-G-AATT-C---AC----GTGT-CC--A--AAAAAA---TATT-A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----ACAT--TA-AA---GT-ACTTATTGATTTAACATAAT-AAAAATGTAC-------AGCCTTTTCC--AAA-------A---TT----G---T--TT-CA-GTTTT-GTTT--GA---TT-CCACTTTTTTTTTT-CCCGT----TATCC-TTGGTCCTTTT--AGCCAGGGACT--------TGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGTG-CA-AA-TA-TCG-TT-C--GTTTTGTTTTGAATAAACTAGCTT--AT-CCA----GGATGTGCTATT---TTAACTCC-G-G--A-AAT--A-------G------CCGA----------AATCTA------A-AAC---A-AA-AACAT--GCA-AAT-ATTTGG-A-GTA---------AGCA--TGTATA-T-TTTA---------T---------A-------CG--TT---TGTCGGGCGTAT-ATA--C-AAC-AAA-------TTA------TA--TA-CACAAA----CCCCCAAT-------AT---TTT-G----TGG--CA-GG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAAATGT-TA-----TAC------G-T----CAG---TCAC-ACCC--T---CGTCGCAC---AC-T-GTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------CTTT---CT--TGGA-----TTTTCA--TACT--------------------------------GTAA-TTTTTT-CC-ACTTG-TCTCACGGA---CA-AACTA-A-CGCTAAAAAAAA-T-TA-C-TT-GTC-CGG-TTATAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|7 : aA-GCACTGTG----T-CAC-TGTC-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGTGCCGAA--AAAAAA---AATTAA--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGtt
gi|7 : aTTTTACAC--TGAAAAATTTACCACGGA-AATCTTGTAC-CAAG-------AGACTT----GAAAT--TCGC--GTTTCTGGTG--GG---TT------TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTT---GACTGATTT--TCGTCAGTCCTTTGTGGCATGA-T--TCAATTTC--GTTTTGTTTCGA-TAAACAAACTT--GT-CCATAATAGATGTGCTATT---TTAACTCC-G-GT-ATAAT----------A--AATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-A-TTGG-A-GTA------TTTAAAAT-T---TG-T-TCTT---------TA--------A-------CG--TT-ATTGTCG--TGTATGATA--T-A-CAAAA-------TTAAT---TTA--CA-CATAAA-CCACCCC-AAT-------AT---TTTAG----TG---CACGG-AC-TAA--CAAGTCA-AGTACC----T---A--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---TGGCACAC---AT-T-GTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCGAA-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CACTCGTGCAAAGCTAAAA---GATACCG-GA-TTGGTAATTTTTTTCCC-AGTTG-TC-CATGGA---C---ACTACA-CGCT--AAAAAA-T-TA-C-TT-GTA-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-C-T--CAGGGCAAGTAA-------TAGAT---GA-A-AATTTTCAAAC----TTGT-C---A--GAAAAA---AATT-A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTAC
gi|8 : ---TT----G---T--TTT-----TTTTGTTTTGGAGGTTT-T----TTTTTTTTT-TTCGT----ATTCT-TTT-TCCTTT--CAGC-TAGGACT--------TGCG----TTTTT---TGACT-----------------------GA-T--T----------TTTTGTTTCGA-TAA-CAAAGTT--G--CCATA-TGGATGTTCTATT---TTAACTCC-AAGT-A-AAT--A-------ATAAATCCCGATG---T-CCAAATCTACATTAAA-A-C---A-ATTAGTAATTGCA-AA--ATATGG-A-GTACATGTATTTAAAAATT---TG-T-TCTT---------TTAAGCCGGTA-------CG--TT-ATTGTCG--CGTATGAAA--T-A-C-AAAATTAAATTTAAT---TTAACCA-CATAAA-ACACCacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|8 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgAC-A-CCGCT---CG-CGC-C---ACATGGTCA-T-CAAG--TTAG--CTGTC-AATATATAGCG-ATG-A-GGCAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--TGGATTAATGGA--T--TTTTCG--CACTC--------C--AAA---GATACCG-GA-TTAGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|9 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-T-T--C-TTGCAG---------------T---GA-A-AATTTC---AC----TTGT-CCG-A--AAGAAA---AGTA-A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCTCTCTCTCTCTCTCTCTTTTTTTTTTATAAGTAATCA-----AAGTCCTA-AAAATGTCAATT-TTGTTATTTCA--AT------TTTAG-------AGCCTTTT--TTAAA------------T----G---C--TTTGA-GTTTTTCTTT--GA---CC-C----
blockSeqs : C TT C G CATG C CC GT A TACATTG G TGG GA CTTGA G GA GT AGTA A GT C G TCGA A A A G A CTCTCTCTCTCTCTCTTTTTTTTTTATAAGTAATCAAAGTCC T AAT T A A TA G CACGGAA NNN NNNGAGTA GAAAT GC TG TTCCACT . . . G T . T TTTG T TTA T T G A TCGT . A A . T T A . A A . T AATA T GC CATTAA . AC T . A T . A ACATGTA AATTTGTTCTTTTAAGCCGGTA . C GG G AAC A A ATTAAAT T AC . CA A TTACAGT . A TGCA G G C A . TAA . AAT . . C A . CATG . . C GC . G . A G T . GT GT G T A T . G GC A . . C . C . T . TT GGA AA TTT . CGTGCAAAGCTA A . T T C . C . T CAA C . AA T A T T . . T . ATAC TACAT GGTTTTTGGGGC GGGCGAGCCA . A TT . C GA
blockSeqs : . T . . . A AC . . G . TGG AT CTTGA . GA . A . . . . . . . . . A CTTTATCAAAAGTA . . A . T TA G CACGGA CCT AGAC ATGA A . GGTTTT . . . . . . T TTTT T TTA T C . . ATCG . . A . . T A . . . . . AATA . C . . C . . . T . . A ATTTGTTCTTTTAAGCCGGTA . . . T C . . . T . . A A . . A . . . . . . CT . T . . C . . . . . . . . A . . A . . . . . . . . . . . . . . . . . . . . . . . TT . CTC A . . T . . C . T CC . . A . . . . . . . . . . TA GGCGAGCCA . . . . C .
blockSeqs : . A . . . . C . . . . . T CAAAC . G . T . . . . . . . . . A CTTTAATCAAAAG . . T . A TA . . CT AGAC GAAA A . TCAC . . . . . . T TTTT T TA T C . . TCAA . . . . . T A . . . . . TAAA . C . . C . . . T . . C TTTGTCTTTTAAGCGGTA . . . G C . . . T . . A A . . A . . . . . . TA . . . . C . . . . . . . . T . . G . . . . . . . . . . . . . . . . . . . . . . . T . CTC A . . T . . C . . CA . . A . . . . . . . . . . TA GG . . . . . .
blockSeqs : . T . . . . C . . . . . T AAC . A . A . . . . . . . . . A CTTTATCAACAT . . T . A TA . . CT A GT A . TCC . . . . . . T TTT T TA T C . . TTG . . . . . T A . . . . . AATA . C . . C . . . T . . A AATTGGTTCTTTTA . . . G T . . . T . . C A . . A . . . . . . TA . . . . C . . . . . . . . G . . G . . . . . . . . . . . . . . . . . . . . . . . T . TCC A . . T . . A . . C . . A . . . . . . . . . . TA G . . . . . .
blockSeqs : . T . . . . C . . . . . G AC . G . A . . . . . . . . . A CTTTATCAA . . C . T C . . AC A GT A . TCC . . . . . . T TG T TA T . . . TCA . . . . . T A . . . . . AAT . T . . C . . . T . . A ATGTATATTTTATA . . . G C . . . T . . C C . . . . . . . . . TA . . . . . . . . . . . . . T . . G . . . . . . . . . . . . . . . . . . . . . . . T . CC A . . T . . C . . T . . A . . . . . . . . . . TA G . . . . . .
blockSeqs : . T . . . . C . . . . . T AC . A . A . . . . . . . . . T TTTATTA . . . . . C . . CC A GT A . TCG . . . . . . . G C T . . . . TG . . . . . T . . . . . . AG . T . . C . . . . . . A ATTTGTTCTTTAA . . . G T . . . . . . A . . . . . . . . . . T . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . T . CC A . . T . . G . . C . . A . . . . . . . . . . TA G . . . . . .
blockSeqs : . T . . . . C . . . . . A AC . A . A . . . . . . . . . . . . . . . . . AC A GT A . CCC G . . . . . . T . . . . . . . . . . . . A . T . . C . . . . . . A TGTATATTTA . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . CC . . . . . . C . . C . . A . . . . . . . . . . TA G . . . . . .
blockSeqs : . T . . . . C . . . . . T AC . G . T . . . . . . . . . . T . GT . . TT . . . . . . . . . . . . . . . . . . . . . A CCCGGTA . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . TA G . . . . . .
blockSeqs : . T . . . . C . . . . . T AC . A . T . . . . . . . . . GC . . T . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . TA . . . . . . .
blockSeqs : . . . . . . T . . . . . T AC . G . A . . . . . . . . . . . . . . . TA . . . . . . .
blockSeqs : . . . . . . . . . . . G AC . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . T AC . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqCons : CTTTATCAATA************************************ CC* GT********* **** ******** TTTG TA* TCG*** ** ** *** AATA********* C**** C**** ATTTGTTCTTTTAACGGTA************************ ** C*** T*** A* ******* *** *** ** TA***** ** ***** *** *** *** ** ****** T**** ** CC********** A*** C***** ** TA*************** **
originalCons : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCT--------------CTTT--------------ATCA-----A-----TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCCTCAAA-------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AAT--A-------A--AATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGG-A-GTA------TTTAAAA--T---TG-T-TCTT---------T---------A-------CG--TT-ATTGTCG--CGTATGATA--C-A-C-AAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CACTC--------CC-AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
finalCons : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-------TA-AT---GA-T-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT-A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTCTTTATCAATA------------------------------------TA-AA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCC-CAAA-------A---TTGT---------TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTTA-TCGTCAGTCCTTTGTG-CATGA-TTCG---TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATT---TTAACTCC-G-GT-A-AATAATA---------AATCCCGA-GC----CCGAATCTA------A-AC----A-ATTAGCATTTGCA-AAT-ATTTGG-A-GTA------TTTAAAATTTGTTCTTTTAACGGTA------------------------CG--TT-ATTGTCG--CGTATGATAC---A-C-AAA-------TTAATT---TA--CA-CATAAAA-CACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGCTA-----AA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGAT----TTTTCG--CACTCC----------AAA---GATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGAC-----AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TGTA---------------CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Alignments
lowQualScore : 111111111111 111111111 777777777777777777777777777777777777777777777777 1 3333333 2222222222222222222222222 22222222222 1111 1 22222222 1111 111 1 111111 1 1 11111 11111111111111 7777777777777777777777777777777777777777777777777777777777 1 2222222 11 2222222 111 1111 111 11 1111 111 11111 1111 111 1 1 111111 11111 22222222222 111111 11111111111111111 22222222222
lowQualScore : 3 44 2 2 5555 5 999 33 2 2 555555555555 33 444444444 2 77 33 444 66 33 2 2 6666 2 2 2 2 3 2 111111111111111111111111111111111111111111111111 888 2 0 5 3 0 77 0 0000000 88 1111111111111111111111111 66 55 00000000000 5 2222 5 5 1 00000000 1 8888 0 2 000 6 3 5 0 5 444444 0 66 0 0 66 4 1 1 777 4 4 9999 888 1 4 44444 55555555555555 4 4 4 1 4 4 5555555555555555555555555555555555555555555555555555555555 4 66 4 66 2 66 0 1111111 8888 66 5 33 0 5 4444444 000 8 2222 555 5 5 33 5 0 2222 5 77 5 555 5 44444 4 5 5 2222 000 5 0 66 888 4 888 0 4 5 5 66 66 5 0 5 5 5 5 5 0 66 4 4 4 4 4 4 66 4 222222 66 777 66 22222 55 4 99999999999 4 4 5 4 4 5 4 8 222222 8 4 44 4 4 4 4 3 3 7 55 7777 99999 00000000000000000 88888888888 3 3 55 55 7 55
lowQualScore : . .. . . .... . ... .. . . ............ .. ......... . .. .. ... .. .. . . .... . . . . . . ................................................ ... . . . . . .. . ....... .. ......................... .. .. ........... . .... . . . ........ . .... . . ... . . . . . ...... . .. . . .. . . . ... . . .... ... . . ..... .............. . . . . . . .......................................................... . .. . .. . .. . ....... .... .. . .. . . ....... ... . .... ... . . .. . . .... . .. . ... . ..... . . . .... ... . . .. ... . ... . . . . .. .. . . . . . . . . .. . . . . . . .. . ...... .. ... .. ..... .. . ........... . . . . . . . . ...... . . .. . . . . . . . .. .... ..... ................. ........... . . .. .. . ..
lowQualScore : 6 22 7 7 7777 3 777 77 7 7 777777777777 77 444444444 7 99 77 777 88 99 9 9 1111 9 9 9 8 6 0 888888888888888888888888888888888888888888888888 888 0 7 7 0 2 11 0 6666666 99 2222222222222222222222222 44 55 11111111111 7 1111 7 7 4 77777777 7 1111 1 0 222 2 9 0 1 0 555555 1 99 0 0 11 4 9 8 888 4 4 4444 111 8 4 88888 99999999999999 4 4 4 9 6 4 4444444444444444444444444444444444444444444444444444444444 4 11 4 99 5 99 0 2222222 9999 99 0 11 1 0 3333333 000 4 1111 777 7 7 66 7 7 1111 7 99 0 777 7 33333 3 7 7 1111 000 0 0 99 888 5 888 0 5 0 0 99 99 0 1 0 0 0 0 0 1 11 4 4 4 4 4 4 11 4 888888 11 888 11 55555 55 0 11111111111 0 0 7 0 0 0 0 0 111111 0 0 88 0 0 0 0 6 6 3 00 7777 11111 66666666666666666 22222222222 6 6 00 00 3 00
consensus : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-TA-------AT---GAT-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT--A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTC---------------------TTT-ATCAAAAGTA----------T-AAA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCC-CAAA--------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GTAAA----TAA--TAAATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGGA-GTA------TTTAAA--------------A-TTTG------T-T---CTTTTAAGCCGG--TA-CG--TT-ATTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CA-CTC---C-------AAAGATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
Reference ( family-5017 ) : TCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-TA-------AT---GAT-AATTTC---AC----TTGT-CCG-A--AAAAAA---AATT--A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTC---------------------TTT-ATCAA---TA----------T-AAA---GTTACTT-TTGNTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCC-CAAA--------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTGGGACT--------TGCGTTTTTTTTTGACTGATTT-ATCGTCAGTCCTTTGTG-CATGA-T--TCG-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GTAAA----TAA--TAAATCCCGA-G---C-CCGAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-ATTTGGA-GTA------TTTAAA--------------A-TTTG------T-T---CTTTTAA--CGG--TA-CG--TT-ATTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-AGCAGC----T-AAA--AAAAA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---CGGCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTCG--CA-CTC---C-------AAAGATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTG
gi|1 : AA--------A---TTCGCCG---T--TCTCT-TTATTTGTTT--GA---AA-T----TTCTTTTTTATTCGTGGCTATTCCCTTG-TCCTTTTTCAGCCTGAGACTAAAAGTCTTGCGATCTTTTT-----------ATCG-CAGTC---TGTC-CATGA-TGGTCG-TTTCCCGTTTCGTTTTGAATAA-AAAACTCTCGT-C-ATAATGGATGTGCTATTTCATTAACCGC-G-GTAAAATATTAAACTAAATCCCGA-GAGACGCCGAATCTA------ACA-CCAAA-ATTAGCATTTGGAGAAT-ATTGGGA-A---------------------------------G------T-----CTTTTAAGCCGAGATAACGCTTT-ATTGTCA--CATAGTATA--CAACAAA-------TTAATATCTTA--CATCATAAATACACCCCAAATA------ATTAATTTCG----TGTGCCACGG-AC-TAAACCACGTCAGAGCAGCTTTAT-AAAATAAAAA---ATGTGTCTCTTACCATTG-ATT----CAGACTTCACTATCC--TTAACGGCGGACAAAACATGGTCA-TGCA--------------C-G--ATC-AGCG-A-GAA-GGCA----TTTATTGACG--CA-TATTAT-TTAACAAGA-AAAGTGTATTCTG-TTTACCCC--T---CT--TGGA--TTGTTTCCGTCCA-CCC---CCAAA---AAGGATACCGCGA-TTGGT-ATTTTTTT-CCGACTTGTTC-CATGAGTACC--AACTATATCGCT-ATAAAA----TA-C-TTCGACGCGGTTTAAACTAAA----A-----AG------TCGTTCA----CGAGTC-G---------GTGC-A--TACTTAAATT--C--ACACCCC
gi|10 : aaaaaatacattattatttccacagtcgctcggaagtccacccatgggaaaaattttgtaccaatagatcttggGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-TA-------AT---GAT-AATTTC---AC----TTGT-CCG-A--AAAAAA---ATTT--A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTC---------------------TTT-ATCAAAAGTA----------T-AAA---GTTAATT-TTGTTGTTACATAAT-AAAAATTTAC-------AGCCTTTTCT-CAAA--------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TTTT
gi|11 : ATC--AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-TA-------ATTGGGAT-AATTCC----CTTGATTGT-CCG-A--AAAAAA---AAatcatgataaaaaatatacttttatctaaattattttctggattgg
gi|11 : TTTTGACTGATTT-ATCGTCAGTC-TTTGTG-CATGA-T--TTG-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GCAAA----TAA--TAAATCCCGA-G---C-CCGAATCTA------A-G-C---A-ATTAGTTTTTGCA-AAT-A-TTGGA-GTA------TTTCAA--------------A-TTTG------T-T---CTTTTAAGCCGG--TA-CG--TT-ATTGttatcgtcagtctttgtgcatgatttgtttcgttttgttttgataacaaacttgtccataatggatgtgctattttaactccggcaaataataaatcccgagcccgaatctaagcaattagtttttgcaaatattggagtatttcaaatttgttcttttaagccggtacgttattg
gi|12 : tttttttttcggacaatcaagggaattatcccaattattacttgcccgagacaagtgCAGGAGTGTG-GAATAATCT-ACTGAGA-GCACT-TG----T-C---T--C-GGGCAAG-AA-TA-------A----GAT-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT--A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTC---------------------TTTAATCAAAAGTA----------T-AAA----TTACTT-TTGATTTTACATANN-NNNNNNNNNN-------NNNNNNNNNN-NNNNNNNNGAGTA---TT----A---TGATTTCA-AATTTTGTTT--
gi|13 : GTG-GAAAAATCA-AGTGAGA-GCACT-TGCATGT-A-C-C--A-GGACAAGTAA-T-------------GGG-AATTTC---AC----CTGT-CCG-A--AGAAAAAGTAACT--AGTCT-T-GTCGATC-CAG-ACCT-TTACAGTAGAAAAAGTTT------TCT----------------------TTT-ATTAAAAGTAAC--------C-AAA---GTT
gi|14 : ACG--CA-T-TT-C-TTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGA--T--TTTTCG--CA-CTC---C-------AAAGATACCG-GA-TTGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT--AAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AAATACA-----TG------T-----A----CAAGTC-GGGCGAGCCAG-GC-A--TACT--AATT-CC--ACACCCCctagcaatgatagttttgcaattacaataaaagaacaacct
gi|15 : --TTTTGG--CA-CTC---T-------CAAGATAAGG-GC-ATG---ATTTAT------A-TTG-TC-CACGAA---T--AACTA-A-CAGT-AAAAAAA-AATA-C-TT-TCC-CGG-TTAAAC--AG----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TATC--ATTT-CC--ACACCCCT
gi|16 : taatatttaaaaagtttcacgctgtaGGGGCTTGCGAAATATCTTAGAGAAACGC-CT-TG----T-C-C-C--C-CGGCAAGTAAGTA-------TT---GGGAAATTTCA--AC----TTGT-CCA-AGTACAAAA---AA-T--A--CT-TGG----TT-CAG-ACTT-TT-TGC-AGAAAAa
gi|17 : gCAGGGGTGTG-GAAATATCT-AG-GAGA-GCAAT-TG----C-C-CCT--C-GGG-AAGTAA--A-------AT---GAT-AATTTC---------CTGT-C---G--AAAAAA---AATT--A--CT-T-G----TC-CAGAACTT-TT
gi|18 : g-AGTGAGA-GCACT-TG----T-C-C-C--C-AGGCAAAT-G-TA-------AT---GGA-AATTTA---AC----TTGT-CCA-A--AAAAAA-------------T-T-C----TC-CAG-ACTT-TTACAgag
gi|19 : aT-GTC-CAG-TTCAAC--AA----A-----TG------T-----A----CAA--------------A-GC-A--TGCT--A--T-TC--ACACCCgaa
gi|2 : CAGGGGTGTG-GAAATATCT-AGCGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-TACATTGTAAT---GAT-AATTTC---AC----TTGT-TCG-G--AAAAAA---AATT--A--CT-T-G----TC-CA------------CTAGAAAA--TTTACCATGTCTC---------------------TTT-ATCAAAAGTA----------T-AAA---GTTAATT-TTGTTTTTACATAAT-AAAAATTTAC-------AGCCTTTTCT-CAAA--------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TC-C----TGTTtgtt
gi|2 : TT--GT-CCATAATGGATGTGCTATTT---TAACTCC-G-GTAAA----TAA--TAAATCCTGA-G---C-CCAAATCTA------A-A-C---A-ATTAGCATTTGCA-AAT-A-TTGGA-GTC------TTTTAACCCNAACAATTAGCA-TTTGCAAATAT-TGGAGTCTTAACCCGG--TA-CG--TT-ATTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTCAGTGCATG---CACAG-AC-TAA--CACGTCA-AGCAGC----TAAAA--AAAAA---GT-TA-----TACCATTG-A-TCATGCAG---TCAC-A-CC--T---TGGCGCAC---AC-TGGTCA-T-CAGGGTTTAAGTCTGTC-GA-ATA-AGCG-A-G-AGGGCACGTTTTTATTGACA--CT-T-TT-T-TAAA-AAGA-AAAGTTTTT--TGTT------C--T---CT--TGGATTT--TTTTTG--CA-ATCT--C-------AAAGATACCG-GA-TT-GTAA--TTTTT-CC-ACTTG-TCTCACGGAC--C--AACT--A-C-CT-AAAAAAA-T-TA-CTTT-GTC-CGG--TAAAC--AA----A-----TGGGTTTTT-----GGGGCCGAGTCGG---------G-GCAA--TACT--AATT-CCGAACACCCCatcatgataaaaaacattcttttatctaaattattgtccataatggatgtgctattttaactccggtaaataataaatcctgagcccaaatctaaacaattagcatttgcaaatattggagtcttttaacccnaacaattagcatttgcaaatattggagtcttaacccggtacgttattgtcgcgtatgatacacaaattaatttacacataaaacaccccaaatatttcagtgcatgcacagactaacacgtcaagcagctaaaaaaaaagttataccattgatcatgcagtcacaccttggcgcacactggtcatcagggtttaagtctgtcgaataagcgagagggcacgtttttattgacacttttttaaaaagaaaagttttttgttctcttggattttttttgcaatctcaaagataccggattgtaatttttccacttgtctcacggaccaactacctaaaaaaattactttgtccggtaaacaaatgggtttttggggccgagtcggggcaatactaattccgaacacccc
gi|3 : caggggtgtggaaatatctagcgagagcacttgtcctcgggcaagtaatacattgtaatgataatttcacttgttcggaaaaaaaattacttgtccactagaaaatttaccatgtctctttatcaaaagtataaagttaattttgtttttacataataaaaatttacagccttttctcaaaattgttttcagtttttgtttgatcctgttatcatgataaaaaacattcttttatctaaatta-AGTCAAA-ACACT-TG----T-C---T--C-GGGCAAGTAA-TA-------ATTGGGAT-AATTCC----CTTGATTGT-CCGAA--AAAAAA---AATT--A--CTCT-G----TC-CAG-ACTTATTACACTAGAAAAA-TT
gi|3 : ---TC-G----TTATTTTTC-CCCGT----ATTCC-TTG-TCCTTTTTCAGCCTGGGACT--------TGCGTGTTTT---GACTGATTTTATCG-CAGTCTTTTGTG-CATGA-T--T-G-TTTC--GTTTTGTTTTGA-TAA-CAAACTT--GTTCCATAATGGATGTGCTATTT---TAACTCCAG-GCAAA----TTA--AAAATCCCGA-GG--C-CCGAATCTA------A-G-C---A-ATTAGTTTTTG-A-AAT--TCTGGAAGTA------TTCAAA----------------TTTG------T-----CTTTTAAG-CGG--TA-CG--TT-ATT-TCG--CGTATTATAAACA-CAAA-------TTAAT-----A--CA-CATAAACAC-CCCCAAATTTACAGTAT---TTT-G----TG---CACGGGAC-TAAA-CACGTCA-AGCACC----C-TAA--AAAAA---GT-TT-----TACCATTG-A-T----CAG---TTAC-A-CC--T---CGACGCAC---AC-TAGTCATT-CAAG--TTAG----GTCGGATATA-AGCG-A-G-A-GGCACGTTTTTACTGACGGCCA-T-TT-TCTTAA-AAGA-AAAGTTTAT--TG-T------T--T---CT--TGGAT-T--TTTTCG--CA-CTC---C-------AAAGATACCG-GA-TTGGTAA-TTTTTT-CC-A-TTG-TC-CACGGA---CAAAACTA-A-CGCT-AAAAAAATT-TA-C-TT-GTC-CGGTTTAAAC--AA----ATACATTG------T-----A----CAAGTC-GGCGAGCCA-G-GC-ATTTACT--AATT-CC--ACACCCattccgggaaaatcctttgttaccaagagacttggaattcgcgtttcgttatttttccccgtattccttgtcctttttcagcctgggacttgcgtgttttgactgattttatcgcagtcttttgtgcatgattgtttcgttttgttttgataacaaacttgttccataatggatgtgctattttaactccaggcaaattaaaaatcccgaggcccgaatctaagcaattagtttttgaaattctggaagtattcaaatttgtcttttaagcggtacgttatttcgcgtattataaacacaaattaatacacataaacacccccaaatttacagtattttgtgcacgggactaaacacgtcaagcaccctaaaaaaagttttaccattgatcagttacacctcgacgcacactagtcattcaagttaggtcggatataagcgagaggcacgtttttactgacggccattttcttaaaagaaaagtttattgtttcttggattttttcgcactccaaagataccggattggtaattttttccattgtccacggacaaaactaacgctaaaaaaatttacttgtccggtttaaacaaatacattgtacaagtcggcgagccaggcatttactaattccacaccctgtc
gi|4 : agtcaaaacacttgtctcgggcaagtaataattgggataattcccttgattgtccgaaaaaaaaaattactctgtccagacttattacactagaaaaattattccgggaaaatcctttgttaccaagagacttggaattcgcgttTCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-TA-------AT---GAT-AATTTC---AC----TTGT-CCA-A--AAAAAA---TATT--A--CT-T-G----TC-CAG-ACTT-TTACACTAGAAAAA-TTTACCATGTCTC---------------------TTT-ATCA-----A----------T-AAA---GTTACTT-TTGATTTTACATAAT-AAAAATGTAC-------AGCCTTTTCCTCAAA--------A---TT----G---T--TTTCA-GTTTTTGTTT--GA---TCAC----TTTTTTTTC-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCAGGGACT--------TGCGTTTTTTTTTTACTGA-TT-ATCGTCAGTCCTTTGTG-CATGA-T--TCGTTTTC--GTTTTGTTTTGA-TAA-CTAGCTT--AT-CCA----GGATGT-CTATTT---TAACTCC-G-GTAAA----T-------------A-G---C-CCGAAGCTA------A-A-C---ATAATA-CATTTGCA-AATAATTTGGA-GTA------CATGCA------------------TG------TAT---ATT-----------TA-CG--TT-TTTGTCG--CGTATGATA--CA-CAAA-------TTAAT---TTA--CA-CATAAA-ACACCCCAAAT-------AT---TTTAG----TG---CACGG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAT--GT-TA-----TAC----G-A-T----CAG---TCAC-A-CC--T---CGTCGCAC---AC-TGGTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CA-T-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--T---CT--TGGA--T--TTTTC------------------------ATAC-------TGGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTTAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGtgtc
gi|5 : CAGGGGTGTG-GAAATATCT-AGTGATA-GCACT-TG----T-C-C-T--C-GGGCAAGTAA-----------------T-AAT--------------------------GAAT---AATTTCA--CT-T-G----TC-CCG-A-----------AAAAAAA-TTTACT-TGTCC--------------------------------------------------A---G--ACTT-TT------ACAC--TGAAAAATTTACCACGGAAAATCTTGTAC-CAAG--------AGACTT----G---AAATTCCGCGTTTCTGGTG--GG---T--------TTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTTT--GACTGATTT-ATCGTCAGTCCTTTGTG-CATGAAT--TCA-TTTC--GTTTTGTTTCGA-TAA-CAAACTT--GT-TCATAATAGATGTGCTATTT---TAACTCC-G-GTAA-----TAA--TAA-TCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-ATT-GGA-GTA------TTTAAA--------------AATTGG------T-T---CTTTTA-----------CG--TTCATTGTCG--TGTATGATA--TA-CAAT-------TAAAT---TTA--CA-CATAAA-CCACCCCAA-T-------AT---TTTAG----TG---CACGG-ACCTAA--CAAGTCA-AGTACC----T-AAA--A--AA---GT-TA-----TACCATTGAA-T----CAG---TCAC-A--C--T---TGGCACAC---AT-TGGTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCG-A-G-A-GGCACG-TTTTATTGACG--CA-T-TT-T-TTAA-AAGACAAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CAGCTC---C-------AAAGATACCG-GATTTGGTAATTTTTCT-CC-CAGTG-TC-CATGGA---C--AA-TA-A-CGCT-AAAAAAA-T-TATC-TT-GTA-CGG-TAAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTG
gi|6 : TCAGGG-TG-G-AAAATATC--AGTAGAA-GCAAT-TG----T-C---T--C-GG-CAA-TAA-TA-------AT---TAG-AATT-C---AC----GTGT-CC--A--AAAAAA---TATT--A--CT-T-------C-CAG-ACTT-TTA-ACTA--AAAA-TTTACCATGTCTC---------------------TTT-ATCAA---CA----------TTAAA---GT-ACTTATTGATTTAACATAAT-AAAAATGTAC-------AGCCTTTTCC--AAA--------A---TT----G---T--TT-CA-GTTTT-GTTT--GA---TT-CCACTTTTTTTTTT-CCCGT----TATCC-TTGGTCCTTTT--AGCCAGGGACT--------TGCGTTTTTTTTTTAC-GATTTTATCGTCAGTC-TTGGTG-CA-AA-TA-TCG-TT-C--GTTTTGTTTTGAATAAACTAGCTT--AT-CCA----GGATGTGCTATTT---TAACTCC-G-G-AAA----TAG--------CCGA----------AATCTA------A-AAC---A-AA-AACAT--GCA-AAT-ATTTGGA-GTA-----------A--------------G-CATG------TAT---ATTTTA--------TA-CG--TT---TGTCGGGCGTAT-ATA--CAACAAA-------TTA------TA--TA-CACAAA----CCCCCAAT-------AT---TTT-G----TGG--CA-GG-AC-TAA--CACGTCA-ATCGGC----T-AAA--AAAAAAATGT-TA-----TAC------G-T----CAG---TCAC-ACCC--T---CGTCGCAC---AC-T-GTCA-T-CAAG--TTAG--CTGTC-GATATG-AGCG-A-G-A-AGCACGTTTTTATTGACG--CC-A-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------CTTT---CT--TGGA-----TTTTCA--TA-CT-----------------------------GTAA-TTTTTT-CC-ACTTG-TCTCACGGA---CA-AACTA-A-CGCTAAAAAAAA-T-TA-C-TT-GTC-CGG-TTATAC---A----A-----TG------T-----A----CGAGTC-----------G-GC----TACT--AATT-CC--ACACCCCTG
gi|7 : aA-GCACTGTG----T-CAC-TGTC-GGGCAAGTAA-TA-------AT---GAT-AATTTC---AC----TTGTGCCGAA--AAAAAA---AATTA-A--CT-T-G----TCACAG-ACTT-TTACACT-GAAAAA-TTTACCACGtt
gi|7 : aTTTTACAC--TGAAAAATTTACCACGGA-AATCTTGTAC-CAAG--------AGACTT----GAAAT--TCGC--GTTTCTGGTG--GG---TT------TTTTTTTTT-TTCGT----ATTCC-TTG-TCCTTTT-CAGCCTAGGACT--------TGTGTTTTTT---GACTGATTT--TCGTCAGTCCTTTGTGGCATGA-T--TCAATTTC--GTTTTGTTTCGA-TAAACAAACTT--GT-CCATAATAGATGTGCTATTT---TAACTCC-G-GTA------TAA--TAAATCCCGA-G---T-CCGAATCTA------A-A-----A-ATTAGTATTTGCA-AAT-ATT-GGA-GTA------TTTAAA--------------A-TTTG------T-T---CTTT--A--------A-CG--TT-ATTGTCG--TGTATGATA--TA-CAAAA------TTAAT---TTA--CA-CATAAA-CCACCCCAA-T-------AT---TTTAG----TG---CACGG-AC-TAA--CAAGTCA-AGTACC----T-AAA--A--AA---GT-TA-----TACCATTG-A-T----CAG---TCAC-A-CC--T---TGGCACAC---AT-T-GTCA-T-CAAG--TTAG--CTGTC-GATATA-AGCGAA-G-A-GGCACGTTTTTATTGACG--CA-T-TT-T-TAAA-AAGA-AAAGTTTAT--TG-T------C--T---GT--TGGA--T--TTTTCG--CA-CTCGTGCAAAGCTAAAAGATACCG-GA-TTGGTAATTTTTTTCCC-AGTTG-TC-CATGGA---C---ACTACA-CGCT--AAAAAA-T-TA-C-TT-GTA-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATTCCC--ACACCCCTGgaaatcttgtaccaagagacttgaaattcgcgtttctggtgggtttttttttttttcgtattccttgtccttttcagcctaggacttgtgttttttgactgattttcgtcagtcctttgtggcatgattcaatttcgttttgtttcgataaacaaacttgtccataatagatgtgctattttaactccggtataataaatcccgagtccgaatctaaaaattagtatttgcaaatattggagtatttaaaatttgttctttaacgttattgtcgtgtatgatatacaaaattaatttacacataaaccaccccaatattttagtgcacggactaacaagtcaagtacctaaaaaagttataccattgatcagtcacaccttggcacacattgtcatcaagttagctgtcgatataagcgaagaggcacgtttttattgacgcatttttaaaaagaaaagtttattgtctgttggatttttcgcactcgtgcaaagctaaaagataccggattggtaatttttttcccagttgtccatggacactacacgctaaaaaattacttgtacggttaaacaaatgtacgagtcgggcatactaattcccacacccctg
gi|8 : aagcactgtgtcactgtcgggcaagtaataatgataatttcacttgtgccgaaaaaaaaaattaacttgtcacagacCAGGGGTGTG-GAAATATCT-AGTGAGA-GCACT-TG----TCC-C-T--CAGGGCAAGTAA-TAG------AT---GAA-AATTTTCAAAC----TTGT-C---A--GAAAAA---AATT--A--CT-T-G----TC-CAG-AC---TTACACTGAAAACA-TTTAC
gi|8 : ---TT----G---T--TTT-----TTTTGTTTTGGAGGTTT-T----TTTTTTTTT-TTCGT----ATTCT-TTT-TCCTTT--CAGC-TAGGACT--------TGCG----TTTTT---TGACT-----------------------GA-T--T----------TTTTGTTTCGA-TAA-CAAAGTT--G--CCATA-TGGATGTTCTATTT---TAACTCC-AAGTAAA----TAA--TAAATCCCGATG---T-CCAAATCTACATTAAA-A-C---A-ATTAGTAATTGCA-AA--ATATGGA-GTACATGTATTTAAA--------------AATTTG------T-T---CTTTTAAGCCGG--TA-CG--TT-ATTGTCG--CGTATGAAA--TA-CAAAATTAAATTTAAT---TTAACCA-CATAAA-ACACCacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaacaccgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|8 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgAC-A-CCGCT---CG-CGC-C---ACATGGTCA-T-CAAG--TTAG--CTGTC-AATATATAGCG-ATG-A-GGCAACTGTTTATTACCA--CAAT-TT-T-TTAA-AAGA-AAAGTTTAT--TG-T------C--TGGATTAATGGA--T--TTTTCG--CA-CTC---C-------AAAGATACCG-GA-TTAGTAATTTTTTT-CC-ACTTG-TC-CACGGA---C--AACTA-A-CGCT-AAAAAAA-T-TA-C-TT-GTC-CGG-TTAAAC--AA----A-----TG------T-----A----CGAGTC-G---------G-GC-A--TACT--AATT-CC--ACACCCCTGgctcgcgccacatggtcatcaagttagctgtcaatatatagcgatgaggcaactgtttattaccacaattttttaaaagaaaagtttattgtctggattaatggatttttcgcactccaaagataccggattagtaatttttttccacttgtccacggacaactaacgctaaaaaaattacttgtccggttaaacaaatgtacgagtcgggcatactaattccacacccctg
gi|9 : caggggtgtggaaatatctagtgagagcacttgtccctcagggcaagtaatagatgaaaattttcaaacttgtcagaaaaaaattacttgtccagacttacactgaaaacatttacacggaaaatctttgtaaccaacgagactggaattcgcgtttctggtttttgttgttttttttgttttggaggtttttttttttttttcgtattctttttcctttcagctaggacttgcgttttttgactgattttttgtttcgataacaaagttgccatatggatgttctattttaactccaagtaaataataaatcccgatgtccaaatctacattaaaacaattagtaattgcaaaatatggagtacatgtatttaaaaatttgttcttttaagccggtacgttattgtcgcgtatgaaatacaaaattaaatttaatttaaccacataaaCAGGGGTGTG-GAAATTTCT-AGGGAGA-GCACT-TG----CAC-T-T--C-TTGCAG---------------T---GAA-AATTTC---AC----TTGT-CCG-A--AAGAAA---AGTA--A--CT-T-G----TC-CAG-ACTT-TTA----AGAAAAT-TTGACCTTGTCTCTCTCTCTCTCTCTCTTTTTTTTTT-ATAAG---TAATCAAAGTCCT-AAAAATGTCAATT-TTGTTATTTCA--AT------TTTAG-------AGCCTTTTTT---AA--------A---T-----G---C--TTTGA-GTTTTTCTTT--GA---CC-C----