lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 22 11 222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 1 11 222 1111 1 444444444444 111 1111 33333333333333333333333333333333333333333333333 111 1111111 222222 1 1 111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 222222222222222 11111 11111111111 33333 1111 2222
lowQualScore : 33333333 3 1 00 0 11 1 1 222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6666 6 2 33 6 333 1 4444 1 5 6 6 999999999999 444 8 2 7777 11111111111111111111111111111111111111111111111 777 1 0 7777777 3 0 4 888888 0 0 999 4 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 9 3 11 3 777777777777777 77 22222 99999999999 22222 555 0000 77 1 3 2222 77 1 0 6
lowQualScore : ........ . . .. . .. . . ... ............................................................................................................................................................................................................ .... . . .. . ... . .... . . . . ............ ... . . .... ............................................... ... . . ....... . . . ...... . . ... . ..................................................................................... . . .. . ............... .. ..... ........... ..... ... .... .. . . .... .. . . .
lowQualScore : 55555555 0 8 66 8 00 4 0 444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4444 0 7 77 7 333 7 2222 0 2 7 7 000000000000 000 0 2 0000 55555555555555555555555555555555555555555555555 555 2 2 0000000 2 2 0 222222 5 0 888 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 2 22 0 222222222222222 99 55555 55555555555 88888 555 6666 22 4 7 2222 33 0 7 0
consensus : NTTTAAG------A-TAACTCCATACTCATATTATTAT--CTGATAAAAGTATAGAAAGNGTGTTTGTTTCTATT-ATCAGAGTTAAAACTAAT-NAA-----TTATCAAATAAA-ATANATAGAG-TAT------CATCGCGCTTTTTAAGATGTGAGACGAAC------A--------------T-----------AAACA--GA------------ATCAT-----------ATATC---------AA---------ATTG-CGATTTTCCTTAAAC-AGCG-TTN-TCAAAATTTCAC----GAAAACTGGTTATA-ACG------------ATAT---AA-TGGTATT----CATAACAATTT--CATGA--TGG----TTTTTTC---TTN-----AA---TA---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTGANAAAGAANTCAAT-GAAAACAGAGTTATTGCCCTTGGATTCATTTTTA------TGGAATATTTTATGTGTAGCAAGA-CAATNCTTTNNGNCGTCGCNATNACTA--GACATTTTG-GA-ATTTATTGGAAAAGACTCCAACAAAATTTATGTTNCTAT---CATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAAT----CTNATGACGTCACA-GGAGGA-TGGAATTAC
Reference ( gi|2 ) : GTTTAAG------A-TAACTTCATATTTGCATTATTAT--CTGATAAATGCATAGACAGTGTGTTCATTTCCATTTATTAAAGTTAAGACTAAT-AAA-----TCATCAAATAAA-ATTCATAAA--T--------CACCATGCTTTCTAA--------------------A--------------T-----------AAACA--GA------------ATCAT-----------A-------------AA---------ATTG-CATTTTTCCTTTAAA-AGCA-TTC-TCAAAATTTCAC----AAAAACTGGTTTTA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTTTCATC---TGT----TTTTTTT---TTT-----AA---TG---TACAAAATATCTGTAGAAAATAAAGGAAAACTATTACATAATGGACTTGAAAACGAATTCTAT-GAAATTAGAGTTATTGCCCTTGAATTAATTCTTAAACTTTTGGAAATTTTTAAGTTTAACCAGAATTTTTTTTTTTATTATTATTATTATTATTGACATTTTACGATATTTATTGGAGAAGACTCTAATAAAATCCATGTTGCTCC---CATGC--ATA-----AATCT---A-AA---TAAATC-TTAGATTTTGC-AAAAT----CTTGTGACGTCGCA-GATGGG-TGAAACTGC
gi|3 : TTTAAG------A-TAACTCCATAGTCTCATTATTATATCTGATGAAAGTGTAGA----GTGTT--------------GGAGTTAA----------A-----TTATAAAATAAA-ATATATTGG--T--------CATTACACTTTTTAA--------------------AATGCGAGACATGTAT-----------AAACT--GA------------ATCAT-----------ACAGA---------AA---------ATTG-AAATTTTCCTTAAAC-AGCA-TTTATCAAAATT-CAC----AAAAACTGATTATA-ATG------------ATAT---AA-CTGTATT----GATAACAA--TTTCATG---AAA----CCTTTTC---TTTACAAAAA---TG---TACAAAATATCTG--AAAAATGAAGGAAAAT-----CATAA--------AAA------TCTATAGAGACT-GAGTTATTGCCCTTGGATTCATTTTT
gi|1 : gcacaggcattgttcattcatacattataaaccagcaacaTTTAAG------G-TAACTCTGTGTC-ACAATATTGT--CTGATAAAGGTATAGGAGGTGTAGTTATTTCTATTTATTAGAGTT-----CAAT-AAAATATTTTATCAAATTAG-ATATATAGGG-T--------CATCGCACTTGTTAAGATGTGATACATGCATGTACA--------------T-----------AAACA--AA------------ATTAT-----------ATATC---------AACACTAGGATATTG-CAATTTTCCTTAAAC-AGTA-TTG--AAAAATTCCAC----AGTAACTGGTTATA-ACAGTGCATATACATGTAT---AA-TGGTATT----CATAACAAT-----ATCA--TGGAACATTTTCTT---TAC-----AAAACTA---TGCAAAATACTCCTGAAAAATAAAGAAAATCTATTGCATAATGGACTTGATAAAGAAGTCAAT-GAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATACTTTGAAACATCGTTATTATTA--G--ATTTTGAAATATTTTATG--------TTTAACAAGAT-----TTTTTAC---AAT-T--ATA-----ACTCTTCGACAA---TACATCATTA-ATTTTAT-CAAAG----CTTATGACGTCACA-GGAAGG-TGGAACTtccctcctctatgtttcacaatattttttatgaattattggaaaagaccccaacaaaatttatgttcttaaacatgtgtaaatttgaataaatcttcaaatttgcaaaaatcttttgacatcacatgtggatgaaagtactttaat
gi|6 : tttttctcaTTTAAGGGATATA-TAACCCCATACTCATATCATTAT--CTTAGAAAAGTATAGAAAGTG-----------A---ATTAGAGTTGAAATTGGT-TAA-----TTATCAAATAAATAT--ATAAAGGT--------CATCGCACTTTCTAG--------------------A--------------TCTGAGATATGCATACAAAGA------------ATCAT-----------ATATCAACGTCAGGAA---------ATTG-CAAGATACCTTAAAC-AGCG-TAA-TCAAAATTTTAC----CAAAATTGGTTAAA-ATG------------ATTT---AA-TAATATTCATGCATATCAATTT
gi|5 : tataaaaaacagaTAAG------AGCATCTTTACACTCATATTAT-AT--GTAAAAAAT--ATAAAAAGGGTATCTGTTCCCATTC-TC---GTTAAAACTTAT-TAA-----TTATCAAAT-CA-ATAAATAGA--TATCG----CATTGTGCTTTTTAAGATGTGAGACGAAC------A--------------T-----------AAACA--GA------------ATCACTTCAACATCAGA-------------AA---------ATTATCGTTTT--CAGTAAATAGCA-ACA-TCAAAATTTCAC----AAAACCTGTTTACA-ACcatgaaaaagtttttagctcacctgagccgaaggc
gi|4 : ttgacaccatcatattgttggtatagagccaaataaaaaacaatcaaactacaatgcattaacatcatttctataatttaaccacacaaaatgttaagttattaaggcatccaaatatgttgttttttttttctaCTCCATATTCATATTATTGT--GTAATAAAAATATAGAAAGGATGTATGTTTCTATT-GTC---GTGAAATCTAATCAAA-----T------ATAAA-ATTAATAAA--TATATATCGCATTGCGCGTTTTAAGATGTGAGACGAAA------A--------------T-----------AAAAG--GATCACATTTCAACATCAG-----------A-------------AT---------ATTG-TCGTTTTCAGTAAAC-AGCAATTA-TCAAAATTTCAC----GAAACCTGGTTATA-ACA------------ATAT---GA-TAGAATT----CATAACAGTTTancttattaattatcaaatcaat
gi|8 : cattctaattcaatttattgacagcatcatattgttggtatgcagccaaaaattatcatataaaaacaaataaactacaatgttttaacatcttaactatgatttaagcacacaacatgttatgttattgaggctttcaaagtatttttttccatggagcatTTAAAA-AGTG-TTC---AATATTTCACTGATGAAAA-TG----TACATGT-----------GTATTTGAACTGGTATT----CATAATGATTT--CATGAAATGG----TTTCTTCACACTA-----AA---TACTTTATAAAATGTCTGTGAAAAATAAAGCAAATCTATTGCATAATGAACTTGATAAAGAATcacaagtaatagctttccaaaagcttgcctgacaaaacaa
gi|10 : tgtattacaaaacaaattaacagaatgtcgatcgatattgtgaatattatgaaaggaAAAATGTCTGTGAAAAATTAAGGACATGTGTTGCACAATGGACTTGAAATAGAGATAAAT-AAAAACAGAGTTATTGCCCTTG
gi|7 : TCAAT-AAAAACAGAGTTATTGCCCTTGGATTCA---TTA------TGGAATATTTTATGTGTAGCAAGA-----TTTTTTTGTTGTTGCAATAACT----ACA------------TATTGGATAAGACTA-GACAATAT-TATTATGCTCCTATCATGCTGATA-----AATTT----------TAAA-C-T--GATTTTGC-CAAAT----TTCATTACATTACATGA-GGA-TGGAATTgtctcaatttctaggccattattga
gi|3 : aaaatgtctgcgaaacgtataggatataaggcaaattgtatataaTTTTATGA-ATT-ATTGGAAAAGACCCCAACAAAATTTATGTT-CTTAAA-CATGT--GTA-----AATTT---G-AA---TAAATC-TTCAAATTTGCAAAAAT----CTTTTGACATCACA-TGTGGA-TGAAAatacttt
gi|11 : gcacaggcattgttcattcatacattataaaccagcaacatttaagataactccatagtctcattattatatctgatgaaagtgtagagtgttggagttaaattataaaataaaatatattggtcattacactttttaaaatgcgagacatgtataaactgaatcatacagaaaattgaaattttccttaaacagcatttatcaaaattcacaaaaactgattataatgatataactgtattgataacaatttcatgaaaccttttctttacaaaaatgtacaaaatatctgaaaaatgaaggaaaatcataaaaatctatagagactgagttattgcccttggattcattttttccctcctctatgtttcacaatattATTGGAAAAAACTTCCATAAAATTCATGTTCCTAT---CATGC--AAAAAAGGAATC----A-AATCTTGAATC-TTGAATTTT-C-AAAATAAAAATTGTGACgtactttaat
gi|9 : GAAAACACTCCAACAAAATTTATTTTGCTCT---CAAGC--TTA-----AATCG---A-AG---TAAATC-AGCGAATTTAC-AAATT----CTAATGACGTCACG-GGAGGATTGAA
gi|12 : atttattgcccttggaatcaattttcaacaagattgttggcaatgtggaacaATGTACCTAT---CATGC--ATA-----AATCT---A-AA---TAGATC-AT-GATTTTGT-AAAAT----CTGATGACATTGCA-GGAGGA-TGGAAttagtttaattttc
gi|14 : ttATGTCTCTAT---CTTGC--GTA-----AATCC---A-AA---GAAATC-AATGATTTTG--AAAAT----CTTATGACATCACtatttacactttct
gi|15 : A-----AATCT---A-A----TAAATT----GATTTTGC-AAAAC----CTGATGACATCACT-GA-AGG-TGGAATTA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTGAGGTGATCGAATAATCACTTGATCAATTTTAACTTTTTAGCTCACCTGAACCGAAGG
Unaligned ( gi|16 ): ATATTCATACATCTTTTCTTTTAGCTCACCTGAGCCGAAGGC
Unaligned ( gi|17 ): GCAAAATCTGATGACACCATACGAGGATGGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 22222222 111 333333333333333333 1 444 11 2222222222 111111111111 888888888 111 11111 444444444444 111 1111 33333333333333 444444444444444444444 2222222 2222222222222 22222222 0000000000000000000000000000000000000000000 111 11111 11111111111 1111
lowQualScore : 55555555 222 6 7 3 3 3 333333333333333333 6 999999 3 3 5 1 444 88 1 7777777777 2 777777777777 000000000 99 77 333 0 44444 5 000000000000 111 6 2 4444 99 66666666666666 222222222222222222222 1 3 66 3 1 33 66 3 8 1 6666666 8 2 0 9999999999999 5 66666666 33 7777777777777777777777777777777777777777777 5 777 1 3 77 1 5 0 111 11111 33333333333 7777 4 1 0 0
lowQualScore : ........ ... . . . . . .................. . ...... . . . . ... .. . .......... . ............ ......... .. .. ... . ..... . ............ ... . . .... .. .............. ..................... . . .. . . .. .. . . . ....... . . . ............. . ........ .. ........................................... . ... . . .. . . . ... ..... ........... .... . . . .
lowQualScore : 00000000 888 7 3 2 2 3 000000000000000000 7 777777 3 7 5 0 222 33 0 7777777777 5 777777777777 000000000 33 11 777 1 99999 7 888888888888 777 7 2 2222 22 22222222222222 222222222222222222222 7 2 00 2 7 55 55 7 8 4 0000000 0 8 8 5555555555555 2 22222222 00 5555555555555555555555555555555555555555555 6 333 0 7 99 0 0 4 111 11111 33333333333 4444 0 0 7 9
consensus : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCA-TT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA--ATC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCAT----ATATC---AACGTCAGGA-ATTGCAATTTTCCTTAAACAGCG-TTN-TCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAATTT--CA----T-G--A--TAGTTTTTTC---TTTA-----A---TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTGATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAATNTTTTTTNTTATCGTTATNATTA-----GACATT-TTG-GA-A---TTTATTGGA-AAGACTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
Reference ( family-499 ) : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGNGTGTTTGTTTCTA-TT-ATCAGAGTT-AA-AACTAATNAATTATCAAATAAAATANATAGAGTATC--ATCGCGCTTTTTAAGATGTGAGAC------GAACATAAACAGAATCAT----ATATC---AA---------ATTGCGATTTTCCTTAAACAGCG-TTN-TCAAAATTTCAC----GAAAACTGGTTATA-ACG------------ATAT---AA-TGGTATT----CATAACAATTT--CA----T-G--A--TGGTTTTTTC---TTNA-----A---TA---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTGANAAAGAANTCAATGAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------TGGAATATTTTATGTGTAGCAAGACAATNCTTTNNGNCGTCGCNATNACTA-----GACATT-TTG-GA-A---TTTATTGGAAAAGACTCCAACAAAAT--TTATGTTNCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
gi|1 : TTTAAG------G-TAACTCTGTG---TCAC-AATATTGTCTGATAAAGGTATAGGAGGTGTAGTTATTTCTATTT-ATTAGAGTTCAATAA--AATATTTTATCAAATTAGATATATAGGG--TC--ATCGCACTTGTTAAGATGTGATACATGCATGTACATAAACAAAATTAT----ATATC---AACACTAGGATATTGCAATTTTCCTTAAACAGTA-TTG--AAAAATTCCAC----AGTAACTGGTTATA-ACAGTGCATATACATGTAT---AA-TGGTATT----CATAACAATAT--CA----TGG--A--ACATTTTCTT---TACA-----AAACTA---TGCAAAATACTCCTGAAAAATAAAGAAAATCTATTGCATAATGGACTTGATAAAGAAGTCAATGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNCAATACTTTGAAACATCGTTATTATTA-----G--ATT-TTG-AA-ATATTTTA-TG--------TTTAACAAGAT--TT-T-TTACA-ATTA------TA-----ACTCTTCGACAA---TACATCATT-AATTTTAT-CAAAGCTTATGACGTCACAGGAAGGTGGAACT
gi|10 : tttttctcaAAAATGTCTGTGAAAAATTAAGGACATGTGTTGCACAATGGACTTGAAATAGAGATAAATAAAAACA-------GAGTTATTGCCCTTGGTCTCAATTTCTA------
gi|11 : ATTGGAAAAAACTTCCATAAAAT--TCATGTTCCT-ATCATGC--AAAAAAGGAATC----A-AATCTTGAATC-TT-GAATTTTC-AAAATggccattattga
gi|12 : --TTATGTACCT-ATCATGC--ATA-----AATCT---A-AA---TAGATC-AT-GATTTTGT-AAAATCTGATGACATTGCAGGAGGATGGAATaaaaattgtgac
gi|14 : ATGTCTCT-ATCTTGC--GTA-----AATCC---A-AA---GAAATCAAT-GATTTTG--AAAATCTTATGACATCACatttacactttct
gi|15 : A-----AATCT---A-A----TAAAT---T-GATTTTGC-AAAACCTGATGACATCACTGAAGG-TGGAATTAC
gi|17 : GC-AAAATCTGATGACACCATACGAGGATGGAAttt
gi|2 : TTTAAG------A-TAACTTCATA--TTTGC-ATTATTATCTGATAAATGCATAGACAGTGTGTTCATTTCCA-TTTATTAAAGTT-AA-GACTAATAAATCATCAAATAAAATTCATAAA---TC--ACCATGCTTTCTAA--------------------ATAAACAGAATCAT----A-------AA---------ATTGCATTTTTCCTTTAAAAGCA-TTC-TCAAAATTTCAC----AAAAACTGGTTTTA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTTTCA----T-C-----TGTTTTTTTT---TTTA-----A---TG---TACAAAATATCTGTAGAAAATAAAGGAAAACTATTACATAATGGACTTGAAAACGAATTCTATGAAATTA-------GAGTTATTGCCCTTGAATTA-ATTCTTAAACTTTTGGAAATTTTTAAGTTTAACCAG--AATTTTTTTTTTTATTATTATTATTATTATTGACATT-TTACGATA---TTTATTGGAGAAGACTCTAATAAAAT--CCATGTTGCT-CCCATGC--ATA-----AATCT---A-AA---TAAATC-TTAGATTTTGC-AAAATCTTGTGACGTCGCAGATGGGTGAAACTGC
gi|3 : gTTTAAG------A-TAACTCCATAGTCTCATTATTAT-ATCTGATGAAAGTGTAGA----GTGTT---------------GGAGTT-AA-A---------TTATAAAATAAAATATATTGG---TC--ATTACACTTTTTAAAATGCGAGAC------ATGTATAAACTGAATCAT----ACAGA---AA---------ATTGAAATTTTCCTTAAACAGCA-TTTATCAAAATT-CAC----AAAAACTGATTATA-ATG------------ATAT---AA-CTGTATT----GATAACAATTT--CA----T-G--A---AACCTTTTC---TTTACAAAAA---TG---TACAAAATATCTG--AAAAATGAAGGAAA---AT--CATAA--------------AAATCTATAGAGACT-------GAGTTATTGCCCTTGGATTC-ATTTTTT------C--CCTCCTCTATGTTT--C---ACAATATTTTT---------TATGA-----------ATTATTG-GA-A-------------AAGACCCCAACAAAAT--TTATGTTCTTAAACATGT--GTA-----AATTT---G-AA---TAAATC-TTCAAATTTGCAAAAATCTTTTGACATCACATGTGGATGAAAGTAC
gi|4 : gcacaggcattgttcattcatacattataaaccagcaacaCTCCATA--TTCAT-ATTATTGTGTAATAAAAATATAGAAAGGATGTATGTTTCTA-TT-GTC---GTG-AA-ATCTAATCAAATATAAAATTAA-TAAATATA-TATCGCATTGCGCGTTTTAAGATGTGAGAC------GAAAATAAA-AGGATCAC----ATTTC---AACATCAGAATATTGTCGTTTTCAGTAAACAGCAATTA-TCAAAATTTCAC----GAAACCTGGTTATA-ACA------------ATAT---GA-TAGAATT----CATAACAGTTT--CACAAGT-A--A--TAGCTTTtttaat
gi|5 : cattctaattcaatttattgacagcatcatattgttggtatgcagccaaaaattatcatataaaaacaaataaactacaatgttttaacatcttaactatgatttaagcacacaacatgttatgttattgaggctttcaaagtatttttttccatggagcatTAAG------AGCATCTTTACA--CTCAT-ATTAT-ATGTAA--AAAATATAAAAAGGGTATCTGTTCCCA-TT-CTC---GTT-AA-AACTTATTAATTATCAAATCAA-TAAATAGA-TATCGCATTGTGCTTTTTAAGATGTGAGAC------GAACATAAACAGAATCACTTCAACATCAGAAA---------ATTATCGTTTTCAGTAAATAGCA-ACA-TCAAAATTTCAC----AAAACCTGTTTACA-ACccaaaagcttgcctgacaaaacaa
gi|6 : ttgacaccatcatattgttggtatagagccaaataaaaaacaatcaaactacaatgcattaacatcatttctataatttaaccacacaaaatgttaagttattaaggcatccaaatatgttgttttttttttctaTTTAAGGGATATA-TAACCCCATA--CTCAT-ATCATTATCTTAGAAAAGTATAGAAAGTG-----------A----ATTAGAGTT-GA-AATTGGTTAATTATCAAATAAA-TATATAAAG-GTC--ATCGCACTTTCTA-GATCTGAGAT------ATGCATACAAAGAATCAT----ATATC---AACGTCAGGAAATTGCAAGATACCTTAAACAGCG-TAA-TCAAAATTTTAC----CAAAATTGGTTAAA-ATG------------ATTT---AA-TAATATTCATGCATATCAATTT--CA----T-GAAA--AAGTTTTTancttattaattatcaaatcaat
gi|7 : tataaaaaacagaAAAATGTCTGCGAAACGTATAGGA--TATAAGGCA-AAT-----TG-TATATAA-TCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-A---TTA------TGGAATATTTTATGTGTAGCAAGA----TTTTTTTGTTGTTGCAATAACT-------ACA----------------TATTGGATAAGACT-AGACAATATTATTATGCTCCT-ATCATGCTGATA-----AATTT----------TAAA---CT-GATTTTGC-CAAATTTCATTACATTACATGAGGATGGAATTAagctcacctgagccgaaggc
gi|8 : TTAAAAAGTG-TT---CAATATTTCACTGATGAAAA-----TGTACATGT-----------GTATTTGAACTGGTATT----CATAATGATTT--CA----T-G--AAATGGTTTCTTCACACTAA-----A---TACTTTATAAAATGTCTGTGAAAAATAAAGCAAATCTATTGCATAATGAACTTGATAAAGAAtacttt
gi|9 : tgtattacaaaacaaattaacagaatgtcgatcgatattgtgaatattatgaaaggaGAAAACACTCCAACAAAAT--TTATTTTGCT-CTCAAGC--TTA-----AATCG---A-AG---TAAATCAGC-GAATTTAC-AAATTCTAATGACGTCACGGGAGGATTGAATTAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAGGTGATCGAATAATCACTTGATCAATTTTAACTTTTTAGCTCACCTGAACCGAAGG
Unaligned ( gi|16 ): ATATTCATACATCTTTTCTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 22222222 111 33333333333333333 22222 11 2222222222 222222222222222222 11 11111 444444444444 111 1111 333333333333 44444444444444444444444 2222222 22222222 22222222 1111111111111111111111111111111111111 1111 111 11111 11111111111 1111
lowQualScore : 55555555 222 6 7 3 3 3 00000000000000000 6 999999 3 7 7 1 55555 88 1 3333333333 2 222222222222222222 0 22 88 44444 5 000000000000 111 6 0 4444 99 333333333333 55555555555555555555555 1 3 66 3 1 33 6 3 555 1 6666666 8 2 0 99999999 1 55555555 1 1 8888888888888888888888888888888888888 0 6666 1 6 3 77 1 5 0 111 11111 33333333333 7777 4 1 0 0
lowQualScore : ........ ... . . . . . ................. . ...... . . . . ..... .. . .......... . .................. . .. .. ..... . ............ ... . . .... .. ............ ....................... . . .. . . .. . . ... . ....... . . . ........ . ........ . . ..................................... . .... . . . .. . . . ... ..... ........... .... . . . .
lowQualScore : 00000000 888 7 3 2 2 0 55555555555555555 7 777777 3 5 3 0 33333 33 0 3333333333 5 333333333333333333 3 99 00 99999 7 888888888888 777 7 3 2222 22 777777777777 55555555555555555555555 7 2 00 2 7 55 7 7 222 4 0000000 0 8 8 00000000 0 22222222 0 0 0000000000000000000000000000000000000 8 0000 0 7 7 99 4 0 4 111 11111 33333333333 4444 0 0 7 9
consensus : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATAT-TCAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAATTT--CA----TG--A--TAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAATNTTTTTTATTATCGTTATTATTA-----GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
Reference ( family-499 ) : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATATATCAACGTCAG-GA-A-TTGCAATTTTCCTTAAACAGCG-TTNTCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAATTT--CA----TG--A--TAGTTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAATNTTTTTTNTTATCGTTATNATTA-----GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
gi|1 : TTTAAG------G-TAACTCTGTG---TCAC-AATATTGTCTGATAAAGGTATAGGAGGTGTAGTTATTTCTATTTATTAGAGTTCAATAA--AATATTTTATCAAATTAGATATATAGG-G-TC--ATCGCACTTGTTAAGATGTGATACATGCATGTACATAAACAAAATTATATATCAACACTAG-GATA-TTGCAATTTTCCTTAAACAGTA-TTG-AAAAATTCCAC----AGTAACTGGTTATA-ACAGTGCATATACATGTAT---AA-TGGTATT----CATAACAATAT--CA----TG--G---AACATTTTC---TTT-----ACAAAACTA---TGCAAAATACTCCTGAAAAATAAAGAAAATCTATTGCATAATGGACTTG-ATAAAGAAGTCAATGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNCAATACTTTGAAACATCGTTATTATTA-----G--ATTTTG-AA-ATATTTTA-TG----------TTTAACAAGAT--TT-T-TTACA-ATTA------TA-----ACTCTTCGACAA---TACATCATT-AATTTTAT-CAAAGCTTATGACGTCACAGGAAGGTGGAACT
gi|10 : tttttctcaAAAATGTCTGTGAAAAATTAAGGACATGTGTTGCACAATGGACTTG-AAATAGAGATAAATAAAAACA-------GAGTTATTGCCCTTGGTCTCAATTTCTA------
gi|11 : ATTGG-A-AAAAACTTCCATAAAAT--TCATGTTCCT-ATCATGC--AAAAAAGGAATC----A-AATCTTGAATC-TT-GAATTTTC-AAAATggccattattga
gi|12 : --TTATGTACCT-ATCATGC--ATA-----AATCT---A-AA---TAGATC-AT-GATTTTGT-AAAATCTGATGACATTGCAGGAGGATGGAATaaaaattgtgac
gi|14 : ATGTCTCT-ATCTTGC--GTA-----AATCC---A-AA---GAAATCAAT-GATTTTG--AAAATCTTATGACATCACatttacactttct
gi|15 : A-----AATCT---A-A----TAAAT---T-GATTTTGC-AAAACCTGATGACATCACTGAAGG-TGGAATTAC
gi|17 : GC-AAAATCTGATGACACCATACGAGGATGGAAttt
gi|2 : TTTAAG------A-TAACTTCATA--TTTGC-ATTATTATCTGATAAATGCATAGACAGTGTGTTCATTTCCATTTATTAAAGTT-AA-GACTAATAAATCATCAAATAAAATTCATA-A-A-TC--ACCATGCTTTCTAA--------------------ATAAACAGAATCATA-------------AA-A-TTGCATTTTTCCTTTAAAAGCA-TTCTCAAAATTTCAC----AAAAACTGGTTTTA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTTTCA----TC-----TGTTTTTTTT---TTT-----A-A----TG---TACAAAATATCTGTAGAAAATAAAGGAAAACTATTACATAATGGACTTG-AAAACGAATTCTATGAAATTA-------GAGTTATTGCCCTTGAATTA-ATTCTTAAACTTTTGGAAATTTTTAAGTTTAACCAG--AATTTTTTTTTTTATTATTATTATTATTATTGACATTTTACGATA---TTTATTGG-AGAAGA-CTCTAATAAAAT--CCATGTTGCT-CCCATGC--ATA-----AATCT---A-AA---TAAATC-TTAGATTTTGC-AAAATCTTGTGACGTCGCAGATGGGTGAAACTGC
gi|3 : gTTTAAG------A-TAACTCCATAGTCTCATTATTAT-ATCTGATGAAAGTGTAGA----GTGTT--------------GGAGTT-AA-A---------TTATAAAATAAAATATATTGG---TC--ATTACACTTTTTAAAATGCGAGAC------ATGTATAAACTGAATCATA---------CAG-AA-AATTGAAATTTTCCTTAAACAGCATTTATCAAAA-TTCAC----AAAAACTGATTATA-ATG------------ATAT---AA-CTGTATT----GATAACAATTT--CA----TG--A---AACCTTTTC---TTTACAAAA-A----TG---TACAAAATATC--TGAAAAATGAAGGAAA---AT--CATAA---------------AAATCTATAGAGACT-------GAGTTATTGCCCTTGGATTC-ATTTTTT------C--CCTCCTCTATGTTT--C---ACAATATTTTTTAT-----------------------------GA-A----TTATTGGAA-AAGA-CCCCAACAAAAT--TTATGTTCTTAAACATGT--GTA-----AATTT---G-AA---TAAATC-TTCAAATTTGCAAAAATCTTTTGACATCACATGTGGATGAAAGTAC
gi|4 : gcacaggcattgttcattcatacattataaaccagcaacaCTCCATA--TTCAT-ATTATTGTGTAATAAAAATATAGAAAGGATGTATGTTTCTATT-GTC---GTG-AA-ATCTAATCAAATATAAAATTAA-TAAATATATA-TCGCATTGCGCGTTTTAAGATGTGAGAC------GAAAATAAA-AGGATCACATTTCAACATCAG-AATA-TTGTCGTTTTCAGTAAACAGCAATTATCAAAATTTCAC----GAAACCTGGTTATA-ACA------------ATAT---GA-TAGAATT----CATAACAGTTT--CACAAGTA--A--TAGCTTTtttaat
gi|5 : cattctaattcaatttattgacagcatcatattgttggtatgcagccaaaaattatcatataaaaacaaataaactacaatgttttaacatcttaactatgatttaagcacacaacatgttatgttattgaggctttcaaagtatttttttccatggagcatTAAG------AGCATCTTTACA--CTCAT-ATTAT-ATGTAA--AAAATATAAAAAGGGTATCTGTTCCCATT-CTC---GTT-AA-AACTTATTAATTATCAAATCAA-TAAATAGATA-TCGCATTGTGCTTTTTAAGATGTGAGAC------GAACATAAACAGAATCAC-T-TCAACATCAGAAA-A-TTATCGTTTTCAGTAAATAGCA-ACATCAAAATTTCAC----AAAACCTGTTTACA-ACccaaaagcttgcctgacaaaacaa
gi|6 : ttgacaccatcatattgttggtatagagccaaataaaaaacaatcaaactacaatgcattaacatcatttctataatttaaccacacaaaatgttaagttattaaggcatccaaatatgttgttttttttttctaTTTAAGGGATATA-TAACCCCATA--CTCAT-ATCATTATCTTAGAAAAGTATAGAAAGTG-----------A---ATTAGAGTT-GA-AATTGGTTAATTATCAAAT-AAATATATAAA-GGTC--ATCGCACTTTCTA-GATCTGAGAT------ATGCATACAAAGAATCATATATCAACGTCAG-GA-AATTGCAAGATACCTTAAACAGCG-TAATCAAAATTTTAC----CAAAATTGGTTAAA-ATG------------ATTT---AA-TAATATTCATGCATATCAATTT--CA----TGAAA--AAGTTTTTancttattaattatcaaatcaat
gi|7 : tataaaaaacagaAAAATGTCTGCGAAACGTATAGGA--TATAAGGCA-AAT-----TGTATATA---ATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-A---TTA------TGGAATATTTTATGTGTAGCAAGA----TTTTTTTGTTGTTGCAATAACT-------ACA---------------TATTGG-ATAAGA-CT-AGACAATATTATTATGCTCCT-ATCATGCTGATA-----AATTT----------TAAA---CT-GATTTTGC-CAAATTTCATTACATTACATGAGGATGGAATTAagctcacctgagccgaaggc
gi|8 : TTAAAAAGTG-TT--CAATATTTCACTGATGAAAA-----TGTACATGT-----------GTATTTGAACTGGTATT----CATAATGATTT--CA----TG--AAATGGTTTCTTCACACTA-----A-A----TACTTTATAAAATGTCTGTGAAAAATAAAGCAAATCTATTGCATAATGAACTTG-ATAAAGAAtacttt
gi|9 : tgtattacaaaacaaattaacagaatgtcgatcgatattgtgaatattatgaaaggaGA-A-AACA-CTCCAACAAAAT--TTATTTTGCT-CTCAAGC--TTA-----AATCG---A-AG---TAAATCAGC-GAATTTAC-AAATTCTAATGACGTCACGGGAGGATTGAATTAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAGGTGATCGAATAATCACTTGATCAATTTTAACTTTTTAGCTCACCTGAACCGAAGG
Unaligned ( gi|16 ): ATATTCATACATCTTTTCTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 22222222 111 33333333333333333 22222 11 2222222222 2222 1 1 11 11111 444444444444 111 1111 333333333333 44444444444444444444444 2222222 22222222 3333333333333 1111111 8888888888888888888888 1111 111 11111 11111111111 1111
lowQualScore : 55555555 222 6 7 3 3 3 00000000000000000 6 999999 3 7 7 1 55555 88 1 3333333333 2 6666 33 3 3 6 0 22 55 44444 5 000000000000 111 6 0 4444 99 333333333333 55555555555555555555555 1 3 66 3 1 33 6 3 555 1 6666666 8 2 0 99999999 1 6666666666666 1 3333333 1 5555555555555555555555 7 6666 1 6 3 77 1 5 0 111 11111 33333333333 7777 4 1 0 0
lowQualScore : ........ ... . . . . . ................. . ...... . . . . ..... .. . .......... . .... .. . . . . .. .. ..... . ............ ... . . .... .. ............ ....................... . . .. . . .. . . ... . ....... . . . ........ . ............. . ....... . ...................... . .... . . . .. . . . ... ..... ........... .... . . . .
lowQualScore : 00000000 888 7 3 2 2 0 55555555555555555 7 777777 3 5 3 0 33333 33 0 3333333333 5 3333 00 3 3 7 3 99 00 99999 7 888888888888 777 7 3 2222 22 777777777777 55555555555555555555555 7 2 00 2 7 55 7 7 222 4 0000000 0 8 8 00000000 0 8888888888888 0 5555555 0 4444444444444444444444 3 0000 0 7 7 99 4 0 4 111 11111 33333333333 4444 0 0 7 9
consensus : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATAT-T-CAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAA--TTTCA----TG--A--TAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAA---TNTTTTTTATTATCGTTATTATTA--GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
Reference ( family-499 ) : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATAT-T-CAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAA--TTTCA----TG--A--TAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAA---TNTTTTTTATTATCGTTATTATTA--GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
gi|1 : TTTAAG------G-TAACTCTGTG---TCAC-AATATTGTCTGATAAAGGTATAGGAGGTGTAGTTATTTCTATTTATTAGAGTTCAATAA--AATATTTTATCAAATTAGATATATAGG-G-TC--ATCGCACTTGTTAAGATGTGATACATGCATGTACATAAACAAAATTATATAT-CAACACTAG-GATA-TTGCAATTTTCCTTAAACAGTA-TTG-AAAAATTCCAC----AGTAACTGGTTATA-ACAGTGCATATACATGTAT---AA-TGGTATT----CATAACAA--TATCA----TG--G---AACATTTTC---TTT-----ACAAAACTA---TGCAAAATACTCCTGAAAAATAAAGAAAATCTATTGCATAATGGACTTG-ATAAAGAAGTCAATGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNCAA---TACTTTGAAACATCGTTATTATTA--G--ATTTTG-AA-ATATTTTA-TG----------TTTAACAAGAT--TT-T-TTACA-ATTA------TA-----ACTCTTCGACAA---TACATCATT-AATTTTAT-CAAAGCTTATGACGTCACAGGAAGGTGGAACT
gi|10 : tttttctcaAAAATGTCTGTGAAAAATTAAGGACATGTGTTGCACAATGGACTTG-AAATAGAGATAAATAAAAACA-------GAGTTATTGCCCTTGGTCTCAATTTCTA------
gi|11 : ATTGG-A-AAAAACTTCCATAAAAT--TCATGTTCCT-ATCATGC--AAAAAAGGAATC----A-AATCTTGAATC-TT-GAATTTTC-AAAATggccattattga
gi|12 : --TTATGTACCT-ATCATGC--ATA-----AATCT---A-AA---TAGATC-AT-GATTTTGT-AAAATCTGATGACATTGCAGGAGGATGGAATaaaaattgtgac
gi|14 : ATGTCTCT-ATCTTGC--GTA-----AATCC---A-AA---GAAATCAAT-GATTTTG--AAAATCTTATGACATCACatttacactttct
gi|15 : A-----AATCT---A-A----TAAAT---T-GATTTTGC-AAAACCTGATGACATCACTGAAGG-TGGAATTAC
gi|17 : GC-AAAATCTGATGACACCATACGAGGATGGAAttt
gi|2 : TTTAAG------A-TAACTTCATA--TTTGC-ATTATTATCTGATAAATGCATAGACAGTGTGTTCATTTCCATTTATTAAAGTT-AA-GACTAATAAATCATCAAATAAAATTCATA-A-A-TC--ACCATGCTTTCTAA--------------------ATAAACAGAATCATA--------------AA-A-TTGCATTTTTCCTTTAAAAGCA-TTCTCAAAATTTCAC----AAAAACTGGTTTTA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTTTCA----T---C--TGTTTTTTTT---TTT-----A-A----TG---TACAAAATATCTGTAGAAAATAAAGGAAAACTATTACATAATGGACTTG-AAAACGAATTCTATGAAATTA-------GAGTTATTGCCCTTGAATTA-ATTCTTAAACTTTTGGAAATTTTTAAGTTTAACCAG--AATTTTTTTTTTTATTATTATTATTATTATTGACATTTTACGATA---TTTATTGG-AGAAGA-CTCTAATAAAAT--CCATGTTGCT-CCCATGC--ATA-----AATCT---A-AA---TAAATC-TTAGATTTTGC-AAAATCTTGTGACGTCGCAGATGGGTGAAACTGC
gi|3 : gTTTAAG------A-TAACTCCATAGTCTCATTATTAT-ATCTGATGAAAGTGTAGA----GTGTT--------------GGAGTT-AA-A---------TTATAAAATAAAATATATTGG---TC--ATTACACTTTTTAAAATGCGAGAC------ATGTATAAACTGAATCATA----------CAG-AA-AATTGAAATTTTCCTTAAACAGCATTTATCAAAA-TTCAC----AAAAACTGATTATA-ATG------------ATAT---AA-CTGTATT----GATAACAA--TTTCA----TG--A---AACCTTTTC---TTTACAAAA-A----TG---TACAAAATATC--TGAAAAATGAAGGAAA---AT--CATAA---------------AAATCTATAGAGACT-------GAGTTATTGCCCTTGGATTC-ATTTTTT------C--CCTCCTCTATGTTT--C---ACAA---TATTTTTTAT--------------------------GA-A----TTATTGGAA-AAGA-CCCCAACAAAAT--TTATGTTCTTAAACATGT--GTA-----AATTT---G-AA---TAAATC-TTCAAATTTGCAAAAATCTTTTGACATCACATGTGGATGAAAGTAC
gi|4 : gcacaggcattgttcattcatacattataaaccagcaacaCTCCATA--TTCAT-ATTATTGTGTAATAAAAATATAGAAAGGATGTATGTTTCTATT-GTC---GTG-AA-ATCTAATCAAATATAAAATTAA-TAAATATATA-TCGCATTGCGCGTTTTAAGATGTGAGAC------GAAAATAAA-AGGATCACAT-TTCAACATCAG-AATA-TTGTCGTTTTCAGTAAACAGCAATTATCAAAATTTCAC----GAAACCTGGTTATA-ACA------------ATAT---GA-TAGAATT----CATAACAG--TTTCACAAGTA--A--TAGCTTTtttaat
gi|5 : cattctaattcaatttattgacagcatcatattgttggtatgcagccaaaaattatcatataaaaacaaataaactacaatgttttaacatcttaactatgatttaagcacacaacatgttatgttattgaggctttcaaagtatttttttccatggagcatTAAG------AGCATCTTTACA--CTCAT-ATTAT-ATGTAA--AAAATATAAAAAGGGTATCTGTTCCCATT-CTC---GTT-AA-AACTTATTAATTATCAAATCAA-TAAATAGATA-TCGCATTGTGCTTTTTAAGATGTGAGAC------GAACATAAACAGAATCAC-T-T-CAACATCAGAAA-A-TTATCGTTTTCAGTAAATAGCA-ACATCAAAATTTCAC----AAAACCTGTTTACA-ACccaaaagcttgcctgacaaaacaa
gi|6 : ttgacaccatcatattgttggtatagagccaaataaaaaacaatcaaactacaatgcattaacatcatttctataatttaaccacacaaaatgttaagttattaaggcatccaaatatgttgttttttttttctaTTTAAGGGATATA-TAACCCCATA--CTCAT-ATCATTATCTTAGAAAAGTATAGAAAGTG-----------A---ATTAGAGTT-GA-AATTGGTTAATTATCAAAT-AAATATATAAA-GGTC--ATCGCACTTTCTA-GATCTGAGAT------ATGCATACAAAGAATCATATAT-CAACGTCAGGAA-A-TTGCAAGATACCTTAAACAGCG-TAATCAAAATTTTAC----CAAAATTGGTTAAA-ATG------------ATTT---AA-TAATATTCATGCATATCAA--TTTCA----TGAAA--AAGTTTTTancttattaattatcaaatcaat
gi|7 : tataaaaaacagaAAAATGTCTGCGAAACGTATAGGA--TATAAGGCA-AAT-----TGTATATA---ATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-A---TTA------TGGAATATTTTATGTGTAGCAAGA-------TTTTTTTGTTGTTGCAATAACT----ACA---------------TATTGG-ATAAGA-CT-AGACAATATTATTATGCTCCT-ATCATGCTGATA-----AATTT----------TAAA---CT-GATTTTGC-CAAATTTCATTACATTACATGAGGATGGAATTAagctcacctgagccgaaggc
gi|8 : TTAAAAAGTG-TT--CAATATTTCACTGATGAAAA-----TGTACATGT-----------GTATTTGAACTGGTATT----CATAATGA--TTTCA----TG--AAATGGTTTCTTCACACTA-----A-A----TACTTTATAAAATGTCTGTGAAAAATAAAGCAAATCTATTGCATAATGAACTTG-ATAAAGAAtacttt
gi|9 : tgtattacaaaacaaattaacagaatgtcgatcgatattgtgaatattatgaaaggaATTGTTG--G-CAATGTG-GA-A---C--A--GA-A-AACA-CTCCAACAAAAT--TTATTTTGCT-CTCAAGC--TTA-----AATCG---A-AG---TAAATCAGC-GAATTTAC-AAATTCTAATGACGTCACGGGAGGATTGAATTAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAGGTGATCGAATAATCACTTGATCAATTTTAACTTTTTAGCTCACCTGAACCGAAGG
Unaligned ( gi|16 ): ATATTCATACATCTTTTCTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 22222222 111 33333333333333333 22222 11 2222222222 2222 1 1 11 11111 444444444444 111 1111 333333333333 44444444444444444444444 2222222 22222222 3333333333333 1111111 8888888888888888888888 1111 111 11111 11111111111 1111
lowQualScore : 55555555 222 6 7 3 3 3 00000000000000000 6 999999 3 7 7 1 55555 88 1 3333333333 2 6666 33 3 3 6 0 22 55 44444 5 000000000000 111 6 0 4444 99 333333333333 55555555555555555555555 1 3 66 3 1 33 6 3 555 1 6666666 8 2 0 99999999 1 6666666666666 1 3333333 1 5555555555555555555555 7 6666 1 6 3 77 1 5 0 111 11111 33333333333 7777 4 1 0 0
lowQualScore : ........ ... . . . . . ................. . ...... . . . . ..... .. . .......... . .... .. . . . . .. .. ..... . ............ ... . . .... .. ............ ....................... . . .. . . .. . . ... . ....... . . . ........ . ............. . ....... . ...................... . .... . . . .. . . . ... ..... ........... .... . . . .
lowQualScore : 00000000 888 7 3 2 2 0 55555555555555555 7 777777 3 5 3 0 33333 33 0 3333333333 5 3333 00 3 3 7 3 99 00 99999 7 888888888888 777 7 3 2222 22 777777777777 55555555555555555555555 7 2 00 2 7 55 7 7 222 4 0000000 0 8 8 00000000 0 8888888888888 0 5555555 0 4444444444444444444444 3 0000 0 7 7 99 4 0 4 111 11111 33333333333 4444 0 0 7 9
consensus : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATAT-T-CAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAA--TTTCA----TG--A--TAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAA---TNTTTTTTATTATCGTTATTATTA--GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
Reference ( family-499 ) : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATAT-T-CAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAA--TTTCA----TG--A--TAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAA---TNTTTTTTATTATCGTTATTATTA--GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
gi|1 : TTTAAG------G-TAACTCTGTG---TCAC-AATATTGTCTGATAAAGGTATAGGAGGTGTAGTTATTTCTATTTATTAGAGTTCAATAA--AATATTTTATCAAATTAGATATATAGG-G-TC--ATCGCACTTGTTAAGATGTGATACATGCATGTACATAAACAAAATTATATAT-CAACACTAG-GATA-TTGCAATTTTCCTTAAACAGTA-TTG-AAAAATTCCAC----AGTAACTGGTTATA-ACAGTGCATATACATGTAT---AA-TGGTATT----CATAACAA--TATCA----TG--G---AACATTTTC---TTT-----ACAAAACTA---TGCAAAATACTCCTGAAAAATAAAGAAAATCTATTGCATAATGGACTTG-ATAAAGAAGTCAATGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNCAA---TACTTTGAAACATCGTTATTATTA--G--ATTTTG-AA-ATATTTTA-TG----------TTTAACAAGAT--TT-T-TTACA-ATTA------TA-----ACTCTTCGACAA---TACATCATT-AATTTTAT-CAAAGCTTATGACGTCACAGGAAGGTGGAACT
gi|10 : tttttctcaAAAATGTCTGTGAAAAATTAAGGACATGTGTTGCACAATGGACTTG-AAATAGAGATAAATAAAAACA-------GAGTTATTGCCCTTGGTCTCAATTTCTA------
gi|11 : ATTGG-A-AAAAACTTCCATAAAAT--TCATGTTCCT-ATCATGC--AAAAAAGGAATC----A-AATCTTGAATC-TT-GAATTTTC-AAAATggccattattga
gi|12 : --TTATGTACCT-ATCATGC--ATA-----AATCT---A-AA---TAGATC-AT-GATTTTGT-AAAATCTGATGACATTGCAGGAGGATGGAATaaaaattgtgac
gi|14 : ATGTCTCT-ATCTTGC--GTA-----AATCC---A-AA---GAAATCAAT-GATTTTG--AAAATCTTATGACATCACatttacactttct
gi|15 : A-----AATCT---A-A----TAAAT---T-GATTTTGC-AAAACCTGATGACATCACTGAAGG-TGGAATTAC
gi|17 : GC-AAAATCTGATGACACCATACGAGGATGGAAttt
gi|2 : TTTAAG------A-TAACTTCATA--TTTGC-ATTATTATCTGATAAATGCATAGACAGTGTGTTCATTTCCATTTATTAAAGTT-AA-GACTAATAAATCATCAAATAAAATTCATA-A-A-TC--ACCATGCTTTCTAA--------------------ATAAACAGAATCATA--------------AA-A-TTGCATTTTTCCTTTAAAAGCA-TTCTCAAAATTTCAC----AAAAACTGGTTTTA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTTTCA----T---C--TGTTTTTTTT---TTT-----A-A----TG---TACAAAATATCTGTAGAAAATAAAGGAAAACTATTACATAATGGACTTG-AAAACGAATTCTATGAAATTA-------GAGTTATTGCCCTTGAATTA-ATTCTTAAACTTTTGGAAATTTTTAAGTTTAACCAG--AATTTTTTTTTTTATTATTATTATTATTATTGACATTTTACGATA---TTTATTGG-AGAAGA-CTCTAATAAAAT--CCATGTTGCT-CCCATGC--ATA-----AATCT---A-AA---TAAATC-TTAGATTTTGC-AAAATCTTGTGACGTCGCAGATGGGTGAAACTGC
gi|3 : gTTTAAG------A-TAACTCCATAGTCTCATTATTAT-ATCTGATGAAAGTGTAGA----GTGTT--------------GGAGTT-AA-A---------TTATAAAATAAAATATATTGG---TC--ATTACACTTTTTAAAATGCGAGAC------ATGTATAAACTGAATCATA----------CAG-AA-AATTGAAATTTTCCTTAAACAGCATTTATCAAAA-TTCAC----AAAAACTGATTATA-ATG------------ATAT---AA-CTGTATT----GATAACAA--TTTCA----TG--A---AACCTTTTC---TTTACAAAA-A----TG---TACAAAATATC--TGAAAAATGAAGGAAA---AT--CATAA---------------AAATCTATAGAGACT-------GAGTTATTGCCCTTGGATTC-ATTTTTT------C--CCTCCTCTATGTTT--C---ACAA---TATTTTTTAT--------------------------GA-A----TTATTGGAA-AAGA-CCCCAACAAAAT--TTATGTTCTTAAACATGT--GTA-----AATTT---G-AA---TAAATC-TTCAAATTTGCAAAAATCTTTTGACATCACATGTGGATGAAAGTAC
gi|4 : gcacaggcattgttcattcatacattataaaccagcaacaCTCCATA--TTCAT-ATTATTGTGTAATAAAAATATAGAAAGGATGTATGTTTCTATT-GTC---GTG-AA-ATCTAATCAAATATAAAATTAA-TAAATATATA-TCGCATTGCGCGTTTTAAGATGTGAGAC------GAAAATAAA-AGGATCACAT-TTCAACATCAG-AATA-TTGTCGTTTTCAGTAAACAGCAATTATCAAAATTTCAC----GAAACCTGGTTATA-ACA------------ATAT---GA-TAGAATT----CATAACAG--TTTCACAAGTA--A--TAGCTTTtttaat
gi|5 : cattctaattcaatttattgacagcatcatattgttggtatgcagccaaaaattatcatataaaaacaaataaactacaatgttttaacatcttaactatgatttaagcacacaacatgttatgttattgaggctttcaaagtatttttttccatggagcatTAAG------AGCATCTTTACA--CTCAT-ATTAT-ATGTAA--AAAATATAAAAAGGGTATCTGTTCCCATT-CTC---GTT-AA-AACTTATTAATTATCAAATCAA-TAAATAGATA-TCGCATTGTGCTTTTTAAGATGTGAGAC------GAACATAAACAGAATCAC-T-T-CAACATCAGAAA-A-TTATCGTTTTCAGTAAATAGCA-ACATCAAAATTTCAC----AAAACCTGTTTACA-ACccaaaagcttgcctgacaaaacaa
gi|6 : ttgacaccatcatattgttggtatagagccaaataaaaaacaatcaaactacaatgcattaacatcatttctataatttaaccacacaaaatgttaagttattaaggcatccaaatatgttgttttttttttctaTTTAAGGGATATA-TAACCCCATA--CTCAT-ATCATTATCTTAGAAAAGTATAGAAAGTG-----------A---ATTAGAGTT-GA-AATTGGTTAATTATCAAAT-AAATATATAAA-GGTC--ATCGCACTTTCTA-GATCTGAGAT------ATGCATACAAAGAATCATATAT-CAACGTCAGGAA-A-TTGCAAGATACCTTAAACAGCG-TAATCAAAATTTTAC----CAAAATTGGTTAAA-ATG------------ATTT---AA-TAATATTCATGCATATCAA--TTTCA----TGAAA--AAGTTTTTancttattaattatcaaatcaat
gi|7 : tataaaaaacagaAAAATGTCTGCGAAACGTATAGGA--TATAAGGCA-AAT-----TGTATATA---ATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-A---TTA------TGGAATATTTTATGTGTAGCAAGA-------TTTTTTTGTTGTTGCAATAACT----ACA---------------TATTGG-ATAAGA-CT-AGACAATATTATTATGCTCCT-ATCATGCTGATA-----AATTT----------TAAA---CT-GATTTTGC-CAAATTTCATTACATTACATGAGGATGGAATTAagctcacctgagccgaaggc
gi|8 : TTAAAAAGTG-TT--CAATATTTCACTGATGAAAA-----TGTACATGT-----------GTATTTGAACTGGTATT----CATAATGA--TTTCA----TG--AAATGGTTTCTTCACACTA-----A-A----TACTTTATAAAATGTCTGTGAAAAATAAAGCAAATCTATTGCATAATGAACTTG-ATAAAGAAtacttt
gi|9 : tgtattacaaaacaaattaacagaatgtcgatcgatattgtgaatattatgaaaggaATTGTTG--G-CAATGTG-GA-A---C--A--GA-A-AACA-CTCCAACAAAAT--TTATTTTGCT-CTCAAGC--TTA-----AATCG---A-AG---TAAATCAGC-GAATTTAC-AAATTCTAATGACGTCACGGGAGGATTGAATTAt
blockSeqs : GGATATA GTC T T T C T TCATTTCCATTTATTAA . GACTA A A A C TATA GC A ATGT C TTT AT A T A AT CT TGATG C T TTG C CATG TT CAAGTAAT ACACTAAATACTT T C TG T C GG T A TAG A . A T AACTTTTG T AACCAGAATTT T TATTATT T ATTGACATTTTACGATATT T GAG A A T TA C A TGA AAAGG AAATCT AAT A G
blockSeqs : AG T . T T A G ATGTTTCTATTGTC . ATCTA C A A T GATA GC G GAAA C TAT AT G . . AA AT A . . . . . . TGAAAA TTTACAAAAATG T A AC T T GG . A ACG T . . T TG C AGCAAGA A TGTTGCA A GGCAATGTGGAAC T GAA G . C . C . A . TAAA TTA . T
blockSeqs : A T . T T A G CTGTTCCCATTCTC . AACTT T T A A AAGG . G GAAC C TT GT . . . A AT A . . . . . . TGAAAT TTTAATG T A TA G T GA . T AAG T . . T C A CACAA T . T GAAT T GAT G . C . T . A . CAAA TTC . G
blockSeqs : A C . . G A T AATTAG . AATTG T C . A AA . G ATGC A . . . . . A AT G . . . . . . TCT T A TC T T . . T TA A . . . . ACA T GA G . C . G . G . TAAA AGC . G
blockSeqs : C . . . . . TGG . A . . . T GG . . . . . . . . . G AT A . . . . . . TGA . . . . . . . . . . AA C . . . C . A . TGAA TT . T
blockSeqs : G . C . . C . G . GAAG AT . T
blockSeqs : G . T . TAA CT . C
blockSeqs : . T T . A
blockSeqs : .
blockSeqCons : C** NCGTTCCCATTGTC*** AACTA* NATA* GNGC****** TT** AT ************ CGAAAT****** ******* GAAC****************** GAN* A** TAAA*******
originalCons : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTTGTTTCCATT-ATTAGAGTT-AA-AACTAATNAATTATCAAATNAAATANATAGA-A-TC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATAT-T-CAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAA--TTTCA----TG--A--TAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAA---TNTTTTTTATTATCGTTATTATTA--GACATTTTG-GA-A---TTTATTGG-A-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
finalCons : NTTTAAG------A-TAACTCCATAC--TCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTNCGTTCCCATTGTC---AGTT-AAAACTA-ATNAATTATCAAATNAAATANATANATA-TC--ATCGCGCTTTTTAAGATGTGAGACGNGC------ATAAACAGAATCATATT--CAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGCG-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAA--TTTCACGAAAT------AGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAA---TNTTTTTTATTATCGTTATTATTGAAC------------------TATTGGAN-AAGA-CTCCAACAAAAT--TTATGTTCCT-ATCATGCA--TA-----AATCTAAA-------TAAATC-NT-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAGGTGATCGAATAATCACTTGATCAATTTTAACTTTTTAGCTCACCTGAACCGAAGG
Unaligned ( gi|16 ): ATATTCATACATCTTTTCTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 22222222 111 666666666666666666 11111 222222 2222222222 222 1 1 111 11111 444444444444 111 1111 1111 44444444444444444444444 2222222 22222222 222222222 9999999999999999999999999999999999999 111111 11111 11111111111 11111
lowQualScore : 55555555 222 6 7 3 3 3 333333333333333333 99999 3 66666 7 7 1 1 222222 1 5555555555 2 777 33 3 3 6 0 222 55 44444 5 000000000000 111 6 0 4444 11 99 4444 55555555555555555555555 1 3 66 3 1 33 6 3 555 1 6666666 8 2 0 99999999 1 222222222 1 0000000000000000000000000000000000000 0 1 1 999999 3 77 4 5 66 11111 33333333333 77777 4 1 0 0
lowQualScore : ........ ... . . . . . .................. ..... . ..... . . . . ...... . .......... . ... .. . . . . ... .. ..... . ............ ... . . .... .. .. .... ....................... . . .. . . .. . . ... . ....... . . . ........ . ......... . ..................................... . . . ...... . .. . . .. ..... ........... ..... . . . .
lowQualScore : 00000000 888 7 3 2 2 0 333333333333333333 00000 3 77777 5 3 0 0 888888 0 2222222222 5 333 00 3 3 7 3 999 00 99999 7 888888888888 777 7 3 2222 77 22 8888 55555555555555555555555 7 2 00 2 7 55 7 7 222 4 0000000 0 8 8 00000000 0 222222222 0 5555555555555555555555555555555555555 8 0 0 222222 7 99 5 0 99 11111 33333333333 44444 0 0 7 9
consensus : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTTCGTTTCCATT--TCA--GTTAAAACT-AATNAA-----TTATCAAATNAAATANATAGATGTC--ATCGCGCTTTTTAAGATGTGAGAC------GTACATAAACAGAATCATA-T-TCAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGC-G-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTCACGA--AACGGTTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAATNTTTTTT------ATTATCGTTATTATTGA------ACG-----TATTGGAAAAGAC------TCCAACAAAAT--TTATGTTCCT-ATCATGC--GTA-----AATCT---A-AA---TAAATC-N-T-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
Reference ( family-499 ) : NTTTAAG------A-TAACTCCATA--CTCAT-ATTATTATCTGATAAAAGTATAGAAAGTGTGTNCGTTCCCATT-GTCA--GTTAAAACT-AATNAA-----TTATCAAATNAAATANATANATATC--ATCGCGCTTTTTAAGATGTGAGAC------GNGCATAAACAGAATCATA-T-TCAACATCAG-AA-A-TTGCAATTTTCCTTAAACAGC-G-TTATCAAAATTTCAC----GAAAACTGGTTATA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTCACGA--AATAGCTTTTTC---TTT-----A-A----TG---TACAAAATGTCTGTGAAAAATAAAGGAAATCTATTGCATAATGGACTTG-ATAAAGAAATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-ATTTTTA------CGGAATNTTTTATGTTTAGCNAGACAATNTTTTTT------ATTATCGTTATTATTGA------AC------TATTGGANAAGAC------TCCAACAAAAT--TTATGTTCCT-ATCATGC--ATA-----AATCT---A-AA---TAAATC-N-T-GATTTTGC-AAAATCTNATGACGTCACAGGAGGATGGAATTAC
gi|1 : TTTAAG------G-TAACTCTGTG---TCAC-AATATTGTCTGATAAAGGTATAGGAGGTGTAGTTATTTCTATT--T----ATTAGAGTTCAATAAAATATTTTATCAAATTAGATATATAGG-GTC--ATCGCACTTGTTAAGATGTGATACATGCATGTACATAAACAAAATTATA-TATCAACACTAG-GATA-TTGCAATTTTCCTTAAACAGT-A-TTG-AAAAATTCCAC----AGTAACTGGTTATA-ACAGTGCATATACATGTAT---AA-TGGTATT----CATAACAATATCATGG--AACA---TTTTC---TTT-----ACAAAACTA---TGCAAAATACTCCTGAAAAATAAAGAAAATCTATTGCATAATGGACTTG-ATAAAGAAGTCAATGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNCAATACTTTGA------AACATCGTTATTATTAG------AT------T-TTG--AAATATTTTATGTTTAACAAGAT--TT---TT--T-ACAAT-T--ATA-----ACTCTTCGACAA---TACATCAT-T-AATTTTAT-CAAAGCTTATGACGTCACAGGAAGGTGGAACT
gi|10 : tttttctcaAAAATGTCTGTGAAAAATTAAGGACATGTGTTGCACAATGGACTTG-AAATAGAGATAAATAAAAACA-------GAGTTATTGCCCTTGGTCTCAATTTCTA------
gi|11 : ATTGGAAAAAAC------TTCCATAAAAT--TCATGTTCCT-ATCATGC--AAAAAAGGAATC----A-AATCTTGAATC-T-T-GAATTTTC-AAAATggccattattga
gi|12 : --TTATGTACCT-ATCATGC--ATA-----AATCT---A-AA---TAGATC-A-T-GATTTTGT-AAAATCTGATGACATTGCAGGAGGATGGAATaaaaattgtgac
gi|14 : ATGTCTCT-ATCTTGC--GTA-----AATCC---A-AA---GAAATC-AAT-GATTTTG--AAAATCTTATGACATCACatttacactttct
gi|15 : A-----AATCT---A-A----TAAAT----T-GATTTTGC-AAAACCTGATGACATCACTGAAGG-TGGAATTAC
gi|17 : GC-AAAATCTGATGACACCATACGAGGATGGAAttt
gi|2 : TTTAAG------A-TAACTTCATA--TTTGC-ATTATTATCTGATAAATGCATAGACAGTGTGTTCATTTCCATTTATTAAAGTTAAGACT-AATAAA-----TCATCAAATAAAATTCATAAAT--C--ACCATGCTTTCTAA--------------------ATAAACAGAATCATA--------------AA-A-TTGCATTTTTCCTTTAAAAGC-A-TTCTCAAAATTTCAC----AAAAACTGGTTTTA-ACG------------GTAT---AA-TAGTATT----CATAACAATTTTTC-A--TCTGTTTTTTTT---TTT-----A-A----TG---TACAAAATATCTGTAGAAAATAAAGGAAAACTATTACATAATGGACTTG-AAAACGAATTCTATGAAATTA-------GAGTTATTGCCCTTGAATTA-ATTCTTAAACTTTTGGAAATTTTTAAGTTTAACCAGA--ATTTTTTTTTTTATTATTATTATTATTATTGACATTTTACGATATTTATTGGAGAAGAC------TCTAATAAAAT--CCATGTTGCT-CCCATGC--ATA-----AATCT---A-AA---TAAATC-T-TAGATTTTGC-AAAATCTTGTGACGTCGCAGATGGGTGAAACTGC
gi|3 : gTTTAAG------A-TAACTCCATAGTCTCATTATTAT-ATCTGATGAAAGTGTAGA----GTGTTGG------------A--GTTAAA---------------TTATAAAATAAAATATATTGGT--C--ATTACACTTTTTAAAATGCGAGAC------ATGTATAAACTGAATCATA----------CAG-AA-AATTGAAATTTTCCTTAAACAGC-ATTTATCAAAA-TTCAC----AAAAACTGATTATA-ATG------------ATAT---AA-CTGTATT----GATAACAATTTCATGA--AA---CCTTTTC---TTTACAAAA-A----TG---TACAAAATATC--TGAAAAATGAAGGAAA---AT--CATAA---------------AAATCTATAGAGACT-------GAGTTATTGCCCTTGGATTC-ATTTTTT------C--CCTCCTCTATGTTT--C---ACAATATTTTTT------A-------------TGA------AT------TATTGGAAAAGAC------CCCAACAAAAT--TTATGTTCTTAAACATGT--GTA-----AATTT---G-AA---TAAATC-T-TCAAATTTGCAAAAATCTTTTGACATCACATGTGGATGAAAGTAC
gi|4 : gcacaggcattgttcattcatacattataaaccagcaacaCTCCATA--TTCAT-ATTATTGTGTAATAAAAATATAGAAAGGATGTATGTTTCTATT-GTC---GTGAAATCT-AATCAA-----ATATAAAATTAA-TAAATATATATCGCATTGCGCGTTTTAAGATGTGAGAC------GAAAATAAA-AGGATCACATT-TCAACATCAG-AATA-TTGTCGTTTTCAGTAAACAGCAA-TTATCAAAATTTCAC----GAAACCTGGTTATA-ACA------------ATAT---GA-TAGAATT----CATAACAGTTTCACAAGTAATAGCTTTtttaat
gi|5 : cattctaattcaatttattgacagcatcatattgttggtatgcagccaaaaattatcatataaaaacaaataaactacaatgttttaacatcttaactatgatttaagcacacaacatgttatgttattgaggctttcaaagtatttttttccatggagcatTAAG------AGCATCTTTACA--CTCAT-ATTAT-ATGTAA--AAAATATAAAAAGGGTATCTGTTCCCATT-CTC---GTTAAAACT-TATTAA-----TTATCAAATCAA-TAAATAGATATCGCATTGTGCTTTTTAAGATGTGAGAC------GAACATAAACAGAATCAC--T-TCAACATCAGAAA-A-TTATCGTTTTCAGTAAATAGC-A-ACATCAAAATTTCAC----AAAACCTGTTTACA-ACccaaaagcttgcctgacaaaacaa
gi|6 : ttgacaccatcatattgttggtatagagccaaataaaaaacaatcaaactacaatgcattaacatcatttctataatttaaccacacaaaatgttaagttattaaggcatccaaatatgttgttttttttttctaTTTAAGGGATATA-TAACCCCATA--CTCAT-ATCATTATCTTAGAAAAGTATAGAAAGTGAATTAG------------A--GTTGAAATT-GGTTAA-----TTATCAAAT-AAATATATAAAGGTC--ATCGCACTTTCTA-GATCTGAGAT------ATGCATACAAAGAATCATA-TATCAACGTCAGGAA-A-TTGCAAGATACCTTAAACAGC-G-TAATCAAAATTTTAC----CAAAATTGGTTAAA-ATG------------ATTT---AA-TAATATTCATGCATATCAATTTCATGA--AAAAGTTTTTancttattaattatcaaatcaat
gi|7 : tataaaaaacagaAAAATGTCTGCGAAACGTATAGGA--TATAAGGCA-AAT-----TGTATATA---ATCAATAAAAACA-------GAGTTATTGCCCTTGGATTC-A---TTA------TGGAATATTTTATGTGTAGCAAGA----TTTTTTT------GTTGTTGCAATAACT--------ACA-----TATTGGATAAGAC------T-AGACAATATTATTATGCTCCT-ATCATGCTGATA-----AATTT----------TAAA---C-T-GATTTTGC-CAAATTTCATTACATTACATGAGGATGGAATTAagctcacctgagccgaaggc
gi|8 : TTAAAAAGT-G-TT--CAATATTTCACTGATGAAAA-----TGTACATGT-----------GTATTTGAACTGGTATT----CATAATGATTTCATGA--AATGGTTTCTTCACACTA-----A-A----TACTTTATAAAATGTCTGTGAAAAATAAAGCAAATCTATTGCATAATGAACTTG-ATAAAGAAtacttt
gi|9 : tgtattacaaaacaaattaacagaatgtcgatcgatattgtgaatattatgaaaggaGAAAACAC------TCCAACAAAAT--TTATTTTGCT-CTCAAGC--TTA-----AATCG---A-AG---TAAATCAG-C-GAATTTAC-AAATTCTAATGACGTCACGGGAGGATTGAATTAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAGGTGATCGAATAATCACTTGATCAATTTTAACTTTTTAGCTCACCTGAACCGAAGG
Unaligned ( gi|16 ): ATATTCATACATCTTTTCTTTTAGCTCACCTGAGCCGAAGGC