lowQualScore : 111111111 111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 111111111 1 222222 222 1 5555555555555555 1 444444444444444 111 11 66666666666666666666 777777777777777 11 1 1111 1 11 11 33333 2 777777777777777777777777777777777777777777777777777 4 1 1 1 2 5555555555 33333 2222222 2222 111111111 5555555555555555555555 33333333333333333 111111 22222 222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 11111 2222222222222222 11111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222222222 333333333333333333333 1 11
lowQualScore : 6 6 555555555 5 6 5 55 888888 9999 111 6 6 5 2222222222222222 2 3 1 000000000000000 6 6 999 44 44444444444444444444 66 111111111111111 00 4 5 2 8888 1 2 55 99 11111 0 555555555555555555555555555555555555555555555555555 0 6 5 6 5 3 6 6 3 2222222222 0 33333 6 6 6 8888888 888 5555 5 888888888 1 2 2 3 5 8888888888888888888888 7777 6 88888888888888888 1 000000 44444 000000 66 66 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 3 2 66666 44 555 44 2222222222222222 3 3 6 33333 5 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 444444444444444 4 4 4 4 4 66 111111111111111111111 777 99 1 4 5 66 6 0 22 3
lowQualScore : . . ......... . . . .. ...... .... ... . . . ................ . . . ............... . . ... .. .................... .. ............... .. . . . .... . . .. .. ..... . ................................................... . . . . . . . . . .......... . ..... . . . ....... ... .... . ......... . . . . . ...................... .... . ................. . ...... ..... ...... .. .. ......................................................................................................................... ....... . . ..... .. ... .. ................ . . . ..... . .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. . ............... . . . . . .. ..................... ... .. . . . .. . . .. .
lowQualScore : 0 0 000000000 0 0 1 22 999999 7777 999 7 0 0 0000000000000000 5 5 0 000000000000000 7 0 000 33 55555555555555555555 88 000000000000000 00 0 5 5 5555 2 8 77 33 00000 0 000000000000000000000000000000000000000000000000000 0 0 0 0 0 3 7 0 0 0000000000 7 33333 5 5 0 2222222 777 4444 7 333333333 4 8 2 0 0 1111111111111111111111 7777 1 66666666666666666 6 999999 55555 555555 99 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6666666 6 8 66666 66 888 66 7777777777777777 3 3 6 33333 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 999999999999999 4 4 4 4 4 11 111111111111111111111 888 77 9 3 0 99 8 3 66 0
consensus : NNNTGAACTAGATGCTGTCATA------AAGACAGCAATACCCGCACGCAAGTGTTTG-CTTNTCAAAAT-ATACTCTCCGTCGTACTTGTG-TAACTAGCAAAGAAGCCACAGNNNGTCGAGAAAAACGTCGCGTTTT--AACCCCATTTGGNCCCCAGGATGAAA-----------ANN-AAAA-TTCCGAAAAC-TTATTGCTCATCTACATA---CTCTA-T-CAATAT---ATATTCTTGCTGCACGTGCCGAGATGCTCTGAGTATTCNGNTGGGNAAGTG-CCCCGAGGTAATCCCAAACATTATTTCATAATTGTNGGAATAGTATTTAAAACGTA--T-AGGCCTACTACTGACTACCTTCGCAAAATCTCAAAACATGTTNACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTCCCAACCTTTAAAGTAAATATATTCTT-GTTGCACATGACGCAACGCAATGATGANCACCGGGTTTTT-----GTTCGTTNTTTTCCCACTNCATTTG--CCCCC-CAGGG-TGAAA----A--AGAAAATTCCGAAAAC-TTA---TGCA-CATCT-TAT----AGG----ACACCACCAATCAAT-TACCTCCCAAAAGA-----TGATTTGGCTAC----TGC----GTAA--AA--TGTAAGA---GGAGTTCTGGGAACC--ATTA-GTA--TTNT--TNGA-A-AA-AAANA-C---G------T---TTT--------T-AAACCCC-AATTTG--CNCC-CA---G--TGA----G-AAAAC------GAAAATTCCG-AAACCTTATTGC-N-CAT--TTATAGGA---C--AC---CACCA-ATCAT--CTT-CC-AAAAGATNATTTG----GCTACTGCG--------T--N--A-AATGTA--A--G-G-GTTCT--GGGAACCAA-G---GGTTTT------ATCGA-AAAA----AC--GTCG--TTT-----------TTNA---------T----CCC--CA---NG-GTG-------AAAA--A-------GAAAATTCCGAAAAC-T---TATTGCACATCTACAGG-ACAC---CACCA-A-TNACCTT-CTA-A-AAAAG-ATG--TT-----GGCTACTGCGTAANNTGTAAGAGAA--TGTTTTGGGACCA------G-TTTTTATTTAT-----T--------ATTTTT------TTTTACA-G------T--C---TTC-TTTTTNAACC--TCA--TTTGGNCCCCANGG-------TG-AAAA------TG-AAAATTCCG-AAA-C-TT--ATTGCACATCTACAT----AGGA-CAC-C---ACC-A---ATCATC---TT-C-C----AAA----AGATGA--------TT-TG----GCTAAC----TACTGC-GTAA-----------AA-----------T-------TTGTAA----------CTNA--------------G--------A-------A---AAAAA---CG---TCGTTTT--T----AC--CCC--TT-TTGGCCC-CCAGGGTGAA------------AATG-AAAA-TTCCG-A-AA-CCTT--ATTGCNCA--TCTACGGG-----ACAC---CACC-AATCATCTTC-CAA--AAAGATGATTTGGCTACT
Reference ( gi|1 ) : CAATGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTTG-CTTGTAAAAAT-ATACTCTTTGTCGTACTTGTG-TAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAA----CGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAA-----------AAT-AAAA-TTCTGAAGAC-CAATTGCATATTTACATA---CGCTA-T-CAAAAA---ATATTCTTGCTGCATATGTC--GATGCACGGAGTCTTTTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGC---C--CTGACCCCCT-----AAATC---AGATATGTT--CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCC-AACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTG--TCCCT-CGAGG-TGAAA----A--AGAAAATTCTGAAAAC-TTAA--TGCA-CATCT-TAT----AGG----ACACCATCAATTAAT-TACCTTTGGAAAGA-----TGATTTGGCTAG----TGC----ACAA--AA--TGTAAGA---GAAGTTCTGGGAACT--ATTAAGTAAGTTAT--TTGA-A-AG-AAAAA-C---G------T---TTT--------G-AAACCCC-AACTTG--CACC-CA---A--TGA----G-AAAAC------GAAAATTCTG-AAACCTTATTGC-T-CAT--TTATAGGA---C--AC---TATCA-ACAAC--CTT-CC-AAAAGATTATTTG----ACCACTGCG--------T--T--A-ACCGTA--A--G-A-GTTCT--GGAAACCAAGGG--GGTTTT------ATCGA-AAAA----AC--GTCG--TTT-----------CTGA---------T----CCT--CA---TG-ATG-------GAAA--A-------GGAAATTCCGAAAAC-C---AATTGCATATCTACAGG-ACAT---TACCA-A-TAACCTT-CTA-A-AAAAG-ATG--TTAA---GGATAATGAGTAATTTGTAAGAGAA--TGTTTTAGAACCA------G-TTCTTATTTAT-----T--------ATTTTT------TTTTACATG------T--C---TTC-TTTTTTAACC--TAAAATTTGGGCGTCATAG-------TG-AAAA------TG-AAAATTCCG-AAATC-AT--ATTACACACATATATAAAAAGGA-CAC-C---ACC-G---ATCATC---TT-C-C----AAA----ATATGA--------CT-TG----GTTAAT----TACTGC-GTAA-----------AA-----------TC------TTGTAA----------CTAA--------------G--------A-------A---AAAAATGTCG---TCGTTTT--T----AC--CCT--TT-TTGACAC-TAAGGGTAAA------------AACG-AAAA-TTCTG-A-AA-CTTT--ATTGCACA--CCTACAAG-----ACAC---CACC-GATCATTTTC-TAA--AGAGATGAACTGGTTACT
gi|10 : TGAACTAGATGCTGTTA-----TG--AGGCAGTAATACCCACACGCAAGTGCTTGTCTTG----AATCATACTCTACATCGTACT
gi|12 : ACTAGATGCTGTTACA-------AGACAGCAATACCTGCCTGTAAGTGGTTG-CCTTTAGA--T-GTACTCTACTTTATACTTTTG-TAAATAGCAAAGAAGCCACagaagccacacaagtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|16 : AGATGTTGTCATA-------AGACAGCAATACTTACAAGAAAGTGTTTG-TCTTTCATTAT-ATATTCTT--TTGTTCCTGGG-TAACTAAATAACGAGCCAaatagtcaacttataccaggctattctata
gi|15 : gGATGCTGTCATA-------AGACAGTGATACCCACACGCAAGTGTCTC-CTTCC--AAAT-GCCCTCTCCGTCGTTCTTGTG-TATTTAGCAAAGAtaatagg
gi|7 : atgAAGACCGTAATACTCATACACAAGTGTTTG-CTTTTCAA--T-ATTCTTTCCATCGTACTTGTC-TAACTAGCAAAGAAGCCACtattttataatttac
gi|6 : ttagatattgtcagAAGACCGTAATACTCATACACAAGTGTTTG-CTTTTCAATAT-AT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACaatattatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|19 : taattagaattagtcagAAGACAGCAATACCCGCACACAAATGTTTG--TTGTaatattatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|20 : actgaatgttgtcatCAAGTGTTTG-TCTATAAAAAT-A--CTATCCGTCGTACTTGTG-TCATTATCGAGGAAGCAACAGtatatggatgcctctacct
gi|3 : GTTGA-AAAA----CGTGTTTTAAAACCTCATTTGGCCCCATGGATGAAATTGAAAACATGAATGAAAA-TTCCGAAAAC-TTATTGCGCATCTGCAtagg
gi|8 : ctgattacatatttataggacgccaataactgcttacgaaaagatgatttggctaactactgcgtaaaatgtagaaccaaaggctgttttcCAAGAAAAACGTCGCTTTAC--AACCCCAACTGGCCCCCATGATGAAA-----------CTG-AAAA-TTCTGAAAAC-gatcacttgtaccagatatcccctcaaaagttgatttggctactttgtaaattgtacgagaccattttatttataaatccatttttttttcttccggggtgaaaaatcccaaaaccttgaattgtacatctacagaacatcaccaatgatcttcctaataaaagatgaattggctactgcttttaaaaaatgtattaggagtttcatatttattttttattttagaaaaaccagattttg
gi|4 : acatgtatattctttgttaacatgacgcaatgaattgatcacaaggtttttaattggttcgtcgttttctcaaacaattttcccttcaagctgaaaaaaaaatctcgataactttgtggacaccaccaatcatctctcaaaacaagatttggctactacgtaaaatgcaaaggggttcttggatctaagttttacTTTTTTGACTTCATTTGGATCCCAGGATAAAA-----------ACT-AAAA-ttaat
gi|9 : tgaaagaggagtttggggaacattttttttactggaaataaatctttttttCCCATTTGCACCTCAAGGTGAAA-----------AAG-AAAA-TTCCGAAAACTTTATTGCTTATTaatccgagaacttgtgcatcaacagggcaccaccaatcattctccaaaaaaaatagtctattgcgaaatattcatgagaaggtctgggaatcaggtttttttaacacagagaaatcgagtttttttttacccattttgtccttatggtgaaaatgaacattttgaatttttattctacattgatgggacaccactaatttccctctaaaaacttaattagtcactgggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|2 : acgtgtatatttaacaaagaagccataatttccggtatattcccaacctttaaagtaaatatcttcttgctgcacatgacacaacacaatgaagctcgagtttttgtttgttattttcctatCCCATTTGGGCCCCAGTGTGAAA-----------ATG-AAAA-TTCTGAAACC-CAATTGCTCATCTACAggaaggacgtacaccgacaatcatctaccggcggtacttgg
gi|14 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggttttgttttgttttgggtttttttgcacaaggtgaaaattattgcacatctaatgtacaccaccaacaatcgattcccaaaagatgatttggtaactgtgtaaaatgtaaaaatagcaacattttttcaactATTTTGCCCC-AGGAT--AA-----------AAT-AAAAATTCTGAggccctcacttgtcatctttcaaaaggtaatttggctactgcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|6 : TTACATGTAGCATTACT-CAATAACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATTCAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTGTAG-AATAGTATTTAAAACGTA--T-AGGC---CTACTGACTACCTTCGCAAAATC-------ATGTTA-CCTGtttataggacaccaatcatcttccaacacataatttgactactacgtaattaaattgtaccagacgttcaaggaaccataagtt
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttaccacaCATA---CTCAA-T--AACAT---ATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATTCAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--T-AGGCCTAC--CTGACTACCT--------TCTCAAAACATGTTTACCTGT
gi|17 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacatacatgtagCATA---CTCTA-TACTGTAT---ATATTCTTGCTGCATATGTCGAGATGTAGTGCATATTCTGTTAGGCAAGTA-CTTTGTGGTAATCgtggta
gi|10 : ---ATATTCTTGTTGCACCTGTC--A------------TTCTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAac
gi|9 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacaagtttattaccacctagcataatctattccatatATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTG--CACCT-CAAGG-TGAAA----A--AGAAAATTCCGAAAACTTTAT--TG------CT-TATTGGAAGGACGTACACCGACAATCATC-TACC
gi|18 : acgtgtatatttaacaaagaagccataatttccggtAATATATCCTT-GTTGCACATGACACAggcggtacttgg
gi|8 : agatTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAA-ACAATTT--TCCCTTCAAGC-TGAAA----A--A-AAAATCTCGATAAC-TT----TGT----------------GG----ACACCACCAATCA-----TCTCTCAAAACA-----AGATTTGGCTAC----TAC----GTAA--AA--TGCAA-A---GGGGTTCTTGGATCT--A-------AGTT-T--TACC-A-AG-AAAAA-C---G------TCGCTTT--------A-CAACCCC-AACTGG--CCCC-CA------TGA----T-GAAACT-----GAAAATTCTG-AAAACTTActaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|4 : acatgTCT-----TTT--TTTTTTTTTGACTTCATTTGGATCCC----AGGATAAAA----ACTAAAAAATCC-GAGAAC-TTG---TGCATCA-----AC----AGG----GCACCACCAATCA-T-T--CTCCAAAAAAA-------ATA-GTCTAT----TGC----GAAA--TA--TTCATGA---GAAGGTCTGGGA-----ATCAGGT---TTTT--TTAACACAG-AGAAATC---GAGTTTTT---TTT--------T-A---CCC-ATTTTG--T-CC-TT---A--TGGT---G-AAAAT------GAACATTTTG-AATTTTTATT-C-TACAT--TGATGGGA---C--AC---CACTA-ATTTC--CCT-CT-AAAAACTTAATTA----GTCACTGGGGGTTTTTTT--T--A-AACG----A--G-G-ATTTTGAGGAAA--AAGAA--AGTGTG------A-CAA-AAGG----AC--Gat
gi|11 : tgaaagaggagtttggggaacattttttttactggaaataaaTTCGTTTTTCAACCCCT-CATTGG--CCCC--CAGGG-TAAGATTGTA--AGAT--TTCTTAAACC-TTAT--TATA-CATGTCTAT----GGA----ACACCATC----AAT-TACCTTCCAAAA--------GATTTGGCgacccggctaacgggaatataccagaattttcttt
gi|2 : aaagttgtggaaaccttatttttctataaagaaacCATTTG--GGCCC-CAGTG-TGAAA----A--TGAAAATTCTG-AAAC-CCAAT-TGCT-CATC--TAC----AGG-------CCCTCACTT-GT-CATCTTTCAAAAGG-----TAATTTGGCTAC----TGC----TTAT--AA--TGTAAAATGTAAAATCC-----ACTGCATT---TA---TA-----GA-A-AA-AAAGT-T---G------C---TTT--------------TTC-GA------CACC-CA-------GG----GTAAAAT------TGAAGTTCCA-AAACTTTATTAC-A-CAT--
gi|3 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggttttgttttgttttgggtttttttgcacaaggtgaaaattattgcacatctaatgtacaccaccaacaatcgattcccaaaagatgatttggtaactgtgtaaaatgtaaaaatagcaacattttttcaactccTTTT--TCTTC-CGGGG-TGAAA----A--A-----TCCCAAAACC-TTGAATTGTA-CATCT--AC----AGA----ACATCACCAATGATC-TTCCTAATAAAAGA-----TGAATTGGCTAC----TGCTTTTAAAA--AA--TGTATTA---GGAGTTattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|14 : ctgattacatatttataggacgccaataactgcttacgaaaagatgatttggctaactactgcgtaaaatgtagaaccaaaggctgttttcgttgaaaaacgtgttttaaaacctcatttggccccatggatgaaattgaaaacatgaatgaaaattccgaaaacttattgcgcatctgcagatcacttgtaccagatatcccctcaaaagttgatttggctactttgtaaattgtacgagaccattttatttataaatccattttTTTG--CCCC----AGG-ATAAA----A--TAAAAATTCTGA-------------------TT-TAT----AGG----ACACC-------AAT-CATCTTCCAACACA-----TAATTTGACTAC----TAC----GTAATTAAATTGTACCA---GACGTTCAAGGAACC--A-TAAGTtcatatttattttttattttagaaaaaccagattttg
gi|5 : atATTCTGAAACC-TTAT--TATA-TATCT--AT----AGG----ACACCACCAATTAACATGC-----AAAAGA-----TGATTTGGCTAC----TGT----GTAA--AA--TGTGAGG---GGAG----GGG---T---TTTGGTAA----------A-A-AA-AATCA-C---GTCGTT-T---TTT--------T-AAACCCC-AGTTTG--GGGA-CA---G--GAA----G-AAAAT------GAAAACTCTG-AAAAC------------T--TTACAAGA---C--AC---CGTCA-ATCAT--CTTCCC-AAAAAATTATTTt
gi|3 : --TACA-TAT-T-TAT----AGG----ACGCCAATAACTGCT-TAC----GAAAAGA-----TGATTTGGCTAACTACTGC----GTAA--AA--TGTA----------------GAACC--A--AAGGCTGTTTTCGTTGA-A-A---AACG-T---G------T---TTT--------A-AAACCTC-A-TTTG--GCCC-CATGGA--TGAAATTG-AAAACATGAATGAAAATTCCG-AAAACTTATTGC-G-CAT--CTGCAGAT---C--ACTTGTACCAGATATC--CCC-TC-AAAAGTTGATTTG----GCTACTTTG--------T--A--A-ATTGTA--C--G-A-G----------ACCA--------TTTT------ATTTA-TAAA----TC----CA--TTT-----------TTTT---------T----TCTTCCG---GG-GTG-------AAAA--A-------------TCCCAAAAC-CTTGAATTGTACATCTACAGA-ACAT---CACCA-A-TGATCTTCCTA-ATAAAAG-ATGAATT-----GGCTACTG-----CTTTTAA-AAAA--TGTATTAGG---A------GTTTCATATTTAT-----T---------TTTTA------TTTTAcgtctcttgatatattaatgagatacttctttgaacttttgttttgaaaagtaagccgtcgttttcgacagctattttgttcccagggt
gi|22 : ctgatT----AGG----ACACCACC----AAT-CATCTTC-AAAAGA-----TTATTTGGCgaaaaaccagattttg
gi|18 : g----ACACTACCAA---AT-CATCTCTGAAAAGAAAATATAATTTTGTTAC----TGC----ACAA--AA--TGTaactgagtaaa
gi|4 : agataatatatccttgttgcacatgac--TGAAAGA---GGAGTTTGGGGAAC---ATTTTTT---TTAC--TGGA-A-AT-AAAT--C---T------T---TTTTTTTTTTTG-A--CTTC-A-TTTG--GATC-CC---A--GGAT---A-AAAACT-----AAAAAATCCG-AGAACTTGT-GCAT-CA-----ACAGGG---C--AC---CACCA-ATCAT--TCT-CC-AAAAAA--AATAG----TCTATTGCGAA------A--T--A-TTCATG--A--GAA-GGTCT--GGGAATCA------GGTTTTTTTAACACAGA-GAAA----TCGAGTTT--TTT-----------TTTACCCATTTTGT----CCT--TA---TG-GTG-------AAAA--T-------GAACATTTTGAATTT-T---TATTCTACATTGATGGG-ACAC---CACTA-A-TTTCCCT-CTA-A-AAA
gi|2 : AAAA---GATGATTTGGTAACT--GT---GTAAA--AT--GTAA-A-AATAGCAA-C---A------T---TTT--------TTCAACTCC-CATTTGGGC-CC-CA---G--TGT----G-AAAAT------GAAAATTCTG-AAACCCAATTGC-T-CAT--CTACAGGCCCTC--ACT--TGTC-----AT--CTT-TC-AAAAGGTAATTTG----GCTACTGC---------T--T--ATAATGTA--A--A-A---TGT--AAAATCCACTGC--A--TTT------ATAGA-AAAA----AA--GTTGCTTTT-----------TCGA---------C----ACC--CA---GG-GT---------AAA--AT------TGAAGTTCCAAAACT-T---TATTACACATcttaattagtcactgggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|11 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggttttgttttgttttgggtttttttgcacaaggtgaaaattattgcacatctaatgtacaccaccaacaatcgattcccAAGTTGTGGAAACC---TTA------TTTT--TCTA-T-AA-AGAAA-CTTCG------T---TTT--------T-CAACCCCTCATTGG--CCCC-CA---GGGTAA----G-ATTGT------AAGATTTCTT-AAACCTTATTAT-A-CATGTCTATGGAA---C--AC---CATCA-ATTAC--CTT-CC-AAAAGATTattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|9 : aATCCC-A-TTTG--CACCTCA---A--GGT----G-AAAAA------GAAAATTCCGAAAACTTTATTGC-T-TAT--TGGAAGGA---CGTAC----ACCG-ACAAT--CAT-CT-Atggc
gi|14 : acgtgtatatttaacaaagaagccataatttccggtatattcccaacctttaaagtaaatatcttcttgctgcacatgacacaacacaatgaagctcgagtttttgtttgttattttcctTTG--C-CC-CA---G---GA----T-AAAAT------AAAAATTCTG-A----------------T--TTATAGGA---C--AC------CA-ATCAT--CTT-CC-AACACATAATTTG----ACTACTACG--------TAATTAA-ATTGTACCA--G-ACGTTCA--AGGAACCAccggcggtacttgg
gi|5 : attATTCTG-AAACCTTATTAT-A-TAT--CTATAGGA---C--AC---CACCA-ATTAA--CAT-GC-AAAAGATGATTTG----GCTACTGTG--------T--A--A-AATGTG--A--G-G-G-------GA-------GG--GGTTTT------GGTAA-AAAAAATCAC--GTCGTTTTT-----------TTAA---------A----CCC--CAGTTTG-GGGACAGGAAGAAA--AT------GAAAACTCTGAAAAC--------------TTTACAAG-ACAC---CGTCA-A-TCATCTT-CCC-A-AAAAtaagtt
gi|3 : CTGATTAC-A-TAT--TTATAGGA---C--GC------CA-ATAACTGCTT-ACGAAAAGATGATTTGGCTAACTACTGCG--------T--A--A-AATGTA--G----------------AACCAAAGGCTGTTTTC------GTTGA-AAAA-----C--GT-G--TTTTAAAAC-----CTCA---------TTTGGCCC--CA---TGGATGAAATT--GAAA--ACATGAATGAAAATTCCGAAAAC-T---TATTGCGCATCTGCAGA-TCACTTGTACCAGA-TATCC-C-CTC-A-AAA-----G--TTGATTTGGCTACTTTGTAAATTGTACGAG-------------ACCA---------TTTTATTTATAAATCC--------ATTTTT------TTT------------T--C---TTC--------------------CGGG-------G-------TG-AA------------AAATCCCA-AAACC-TTGAATTGTACATCTAC------AGAA-CAT-C---ACC-A---ATGATC---TT-C-CTAATAAA----AGATGA--------AT-TG----GCTAattatttcgtctcttgatatattaatgagatacttctttgaacttttgttttgaaaagtaagccgtcgttttcgacagctattttgttcccagggt
gi|8 : T--TTGT-GGA---C--AC---CACCA-ATCAT--CTC-TC-AAAACAAGATTTG----GCTACTACG--------T--A--A-AATGCA--AAGG-G-GTTCT--TGGATCTAAG------TTTT------ACCAAGAAAA----AC--GTCG--CTTTACAACCCCAACTGG---------C----CCC--CA---TG-ATG-------AAAC--T-------GAAAATTCTGAAAAC-ctgcttttaaaaaatgtattaggagtttcatatttattttttattttagaaaaaccagattttg
gi|22 : acatgtatattctttgttaacatgacgcaatgaattgatcacaaggtttttaattggttcgtcgttttctcaaacaattttcccttcaagctgaaaaaaaaatctcgataacTAGGA---C--AC---CACCA-ATCAT--CTT-C--AAAAGATTATTTG----GCAACTGAG--------T--A--A-Attaat
gi|4 : g----AC--TTCA--TTT-----------G-GA---------T----CC---CA---GG-ATA-------AAAACTA-------AAAAAT-CCGAGAAC-------TTGTGCATCAACAGG-GCAC---CACCA-A-TCATTCT-CCA-A-AAAAA-AT------A---GTCTATTGCGAAATATTCATGAGAA--GGTCTGGGAATCA------G-GT--------------------------TTT------TTTAACACAGAGAAAT--CGAGTTT-TTTTTTACCC------ATTTTGTCCTTATGG-------TG-AAAA------TG-AACATTTTG-AATTT-TT--ATT-C-----TACATTGATGGGA-CAC-C---ACT-A---ATTTCC---CT-C-T----AAA----A----A--------CT-TA----ATTAGT----CACTG
gi|2 : tgaaagaggagtttggggaacattttttttactggaaataaatctttttttttttttg---------T----CCT--CA---AG-GTG-------AAAA--A-------GACAATTTCATAATC-T---TATTGCACAGCTA-AGGCACAC---TACCA-A-TCATCTC-CTA-A-AGGATTAT---TT-----GGTTACTGCATAAATTGTA--------TATTTTA---------------TTTTATTTTT-----T--------ATCCCCAAAAAATATTG---G------T--T---TTG-TTTTGT-----------TTTGGGTTTTTTTG-------CACAAGG------TG-AAAATT--------------ATTGCACATCTA-AT-----GTA-CAC-C---ACC-A---ACAATCGATTC-C-C----AAA----AGATGA--------TT-TG----GT--A------ACTGT-GTAA-----------AA-----------T---------GTAA---------------------------------------------------AAATAGCA---ACATTTT--TTCA-ACTCCCA--TT-TGGGCCC-CA-GTGTGAA------------AATG-AAAA-TTCTG-A-AA-CCCA--ATTGCTCA--TCTACAGG-----CCCT---CACT-TGTCATCTTT-CAA--A-AGGTAATTTGGCTACTggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|9 : ----CCT--CA---AG-GTG-------AAAA--A-------GAAAATTCCGAAAACTT---TATTGCTTATTGGAAGG-ACGTA--CACCG-A-CAATCAT-CTA-gcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|5 : acgtgtatatttaacaaagaagccataatttccggtatattcccaacctttaaagtaaatatcttcttgctgcacatgacacaacacaatgaagctcgagtttttgtttgttattttcctatcccatttgcaATTCTGAAACC-T---TATTATATATCTATAGG-ACAC---CACCA-ATTAACATG-C-----AAAAG-ATG--ATTT---GGCTACTGTGTAAAATGTGAGGGGAGGGGTTTTGGccggcggtacttgg
gi|3 : ATTACATATTTATAGG-ACG------CCA-A-TAACTGC-TTACG-AAAAG-ATG--ATTT---GGCTAAC---TACTGCGTAA---AA--TGT---AGAACCAAAGGCTG-TTTTCGTTGAA-----A--------A---------------ACGTG------T-----------TTTAAAACC--TCA--TTTGGCC-CCATGGATGAAATTG-AAAACATGAATG-AAAATTCCG-AAAAC-TT--ATTGCGCATCTGCA-------GATCAC-TTGTACCAG---AT-ATC---CC-CTC----AAA----AGTTGA--------TT-TG----GCTA--------CTTT-GTAA-----------A--------------------TTGTA------------CGA--------------G--------ACCATTTTATTTATAAAT-------CCATTTT--T---------TT--TT-CTTCCG-----GGGTGAA------------AA------A-TCCCA-A-AA-CCTTGAATTGTACA--TCTACAGA-----ACAT---CACC-AATGATCTTCCTAATAAAAGATGAATTGGCTACTtaaaaaaaatcacgtcgtttttttaaaccccagtttggggacaggaagaaaatgaaaactctgaaaactttacaagacaccgtcaatcatcttcccaaaaaattatttcgtctcttgatatattaatgagatacttctttgaacttttgttttgaaaagtaagccgtcgttttcgacagctattttgttcccagggt
gi|4 : ctgTGAAAGAGGA---GTTTGGGGAACA--------TTTTT-TTTAC-----TGGAAATAAATCTTT------TTTT----------------------TTTTTTGACT--TCA--TTTGGATCCCAGGA-------TA-AAAAC-----TA-AAAAATCCG-AGA------------ACTTGTGCATCAACAGGG-CAC-C---ACC-A---ATCATT---CT-C-C----AAAAAAAATA-GT--------CTATT----GCGAAA----TATT-C-ATGAGAAGGTCTGGGAA-----------TCAGGTTTTTTTAA----------CACA--------------G--------A-------G---AAA----TCGAGTTTTTTTT--T----AC--CCA--TT-TTGTC-C-TTATGGTGAA------------AATG-AACA-TTTTG-A-AT-TTTT--ATTCTACA--TTGATGGG-----ACAC---CACT-AATTTCCCTC-TAA--A-AACTTAATTAGTCACTgcttttaaaaaatgtattaggagtttcatatttattttttattttagaaaaaccagattttg
gi|11 : T-----T--------ATTTTT------CTATAAA-G------AAAC---TTCGTTTTTCAACCCCTCA---TTGGCCCCCAGGG-------TA-AGAT------TGTAAGATTTCTTAAACC-TT--ATTATACATGTCTATG----GAA-CAC-C---ATC-A---ATTACC---TT-C-C----AAA----A---GA--------TT-TG----Ggggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|5 : aaagttgtggaaaccCACG------T--C---GTT-TTTTTAAACC--CCAG-TTTGGG-GACAGGA-------AG-AAAA------TG-AAAACTCTG-AAA---AC--TTTAC--------------AAGA-CAC-C---GTC-A---ATCATC---TTCC-C----AAA----AAATTATTTCGTCTCT-TGATATATTAATGAGATACTTCTTTGA-----------AC-----------TT------TTGT-------------TTT--------------G--------A-------A---AAGTAAGCCG---TCGTTTT--c
gi|9 : attctgaaaccttattatatatctataggacaccaccaattaacatgcaaaagatgatttggctactgtgtaaaatgtgaggggaggggttttggtaaaaaaaatATTTGCACCTCAAGG-------TG-AAAA------AG-AAAATTCCG-AAAACTTT--ATTGC-----T-TATTGGAAGGA-CGTAC---ACC-GACAATCATC---TA-C-C----cgacagctattttgttcccagggt
gi|14 : acgtgtatatttaacaaagaagccataatttccggtatattcccaacctttaaagtaaatatcttcttgctgcacatgacacaacacaatgaagctcgagtttttgtttgttattttcctatccc-AAAA------TA-AAAATTCTG-A----------TT---------TATA----GGA-CAC-C---A-------ATCATC---TT-C-C----AAC----ACATAA--------TT-TG--------AC----TACTAC-GTAA-----------ggcggtacttgg
gi|5 : attttgccccaggatATTCTG-AAACC-TT--ATTATATATCTATA------GGA-CAC-C---ACC-A---ATTAAC---AT-G-C----AAA----AGATGA--------TT-TG----GCTA--------CTGT-GTAA-----------AA-----------T---------GTGAGGGGAGGGGTTTTG--------------GTA------A-------A---AAAAATCACG---TCGTTTT--TTTAAAC--CCCAGTT-TGGGGAC---AGGAAGAA------------AATG-AAAA-CTCTG-A-AAACTTT--A-------------CAAG-----ACAC---CGTC-AATCATCTTC-CCA--AAAAATttaaattgtaccagacgttcaaggaaccataagtt
gi|3 : --ATTACATATTTATA------GGA-CGC-C---AAT-A---ACTGCT---TA-C-G----AAA----AGATGA--------TT-TG----GCTAAC----TACTGC-GTAA-----------AA-----------TG------TAG-AA----------CCAAAGGCTGTTTTCGTTG--------A-------A---AAA-----CG---T-GTTTTAAA----AC--CTC--AT-TTGGCCC-CATGGATGAAATTGAAAACATGAATG-AAAA-TTCCG-A-AA-ACTT--ATTGCGCA--TCTGCAGA-----TCACTTGTACCAGAT-ATCCCC-TCA--AAAGTTGATTTGGCTACTtatttcgtctcttgatatattaatgagatacttctttgaacttttgttttgaaaagtaagccgtcgttttcgacagctattttgttcccagggt
gi|22 : ctgAGGA-CAC-C---ACC-A---ATCATC---TT---C----AAA----AGATTA--------TT-TG----G-CA-------ACTGA-GTAA-----------Attgtaaattgtacgagaccattttatttataaatccatttttttttcttccggggtgaaaaatcccaaaaccttgaattgtacatctacagaacatcaccaatgatcttcctaataaaagatgaattggctactgcttttaaaaaatgtattaggagtttcatatttattttttattttagaaaaaccagattttg
gi|8 : gtGGA-CAC-C---ACC-A---ATCATC---TC-T-C----AAA----ACAAGA--------TT-TG----G----C----TACTAC-GTAA-----------AATGCAAAGGGGTTC------TTGGAT----------CTAA--------------GTTTTACCAA-------G---AAAAA---CG---TCGCTTTACA----AC--CCC--AA-CTGGCCC-CCATGATGAA------------ACTG-AAAA-TTCTG-A-AA-ACTT--A
gi|11 : acatgtatattctttgttaacatgacgcaatgaattgatcacaaggtttttaattggttcgtcgttttctcaaacaattttcccttcaagctgaaaaaaaaatctcgataactttgt--------A-------A---AGAAA---CT---TCGTTTT--TCA--AC--CCC--TCATTGGCCC-CCAGGGTAAG------------ATTGTAAGATTTCTT-A-AA-CCTT--ATTATACATGTCTATGGA-----ACAC---CATC-AATTACCTTC-CAA--A-AGATat
gi|8 : aaagttgtggaaaccttatttttctatTCG---TCGTTTT--CTCAAAC--AAT--TT-TC--CCT-TCAAGCTGAA------------AA-A-AAAA-TCTCG-ATAA-CTTT--GT--------------GG-----ACAC---CACC-AATCA-TCTC-TCA--AAACAAGATTTGGCTACTttggc
gi|9 : acatgtatattctttgttaacatgacgcaatgaattgatcacaaggtttttaattggtTTG---TTATTTTCCT----AT--CCC--AT-TTG-CACCTCAAGGTGAA------------AAAG-AAAA-TTCCGAA-AA-CTTT--ATTGCTTA---TTGGAAGGACGTACAC---CGAC-AATCATCTacgtaaaatgcaaaggggttcttggatctaagttttaccaagaaaaacgtcgctttacaaccccaactggcccccatgatgaaactgaaaattctgaaaacttaat
gi|22 : acgtgtatatttaacaaagaagccataatttccggtatattcccaacctttaaagtaaatatcttcttgctgcacatgacacaacacaatgaagctcgagtttttgtAGG-----ACAC---CACC-AATCATCTTC-AAA--AGAaccggcggtacttgg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AATATTTGTACCGCATGTCTAGATGCATTGCGCATTTCTGTTGGGTAATCTCAATATTCATTTCAAAATAGATGAGACATATTTTAAAAATTGAGTTCCTGAGCCCCAAATCATATGTTC
Unaligned ( gi|21 ): ACTAGATATAGTCATCAGACAGTAATCCTCGCCCGTGAGTGTTTAACTTTATATATACTC
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT
Alignments
lowQualScore : 1111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 111111 1111111111111111 2 2 222 11 2 2222 444444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 1 111 33333 11 44444444444444444444444 1111 22222 1111 33333333333333333333333333333333333333333333333333333333333333 1 22222222222 1111111 111 11111 66666666666666666666666666666666666666666666666666666666 11 111111 11 11 111 11 1 1 1 1 2222222 111111 2222 444444 1 5555555555 11 3333 5555555555555 8888888888888888 66666666 333 2 222 333 33333 222 444 1 1 1 1 11
lowQualScore : 7777777777 0 0 4 3 111111 2 0 2 5 0 9999 6666666666666666 1 6 22 6 4 8 3 0 1 777 2 1 7777 666 0 1 1 1 8 1 0 3 33 3 2222 999999 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 3 0 2 2 0 2 333 1 88 11 33333 1 222 222 22 2 2 0 33 6 3 44444444444444444444444 2222 3 1 66666 2 6 4444 00000000000000000000000000000000000000000000000000000000000000 1 6 0 99 88888888888 7777777 3 4 22 555 2 5 888 5 000 22222 1 33333333333333333333333333333333333333333333333333333333 33 4 666666 2 33 1 0 33 1 2 666 0 2 9 33 6 3 11 1 0 3 3 3 5555555 3 555555 5555 555555 3 7 8888888888 88 2222 2 6666 9999999999999 1 8888888888888888 2 33333333 2 2 555 2 3 111 888 11111 333 3 111 3 3 0 3 0 3 1 88 0 4 7 999
lowQualScore : .......... . . . . ...... . . . . . .... ................ . . .. . . . . . . ... . . .... ... . . . . . . . . .. . .... ...... ................................................................................................................. . . . . . . . ... . .. .. ..... . ... ... .. . . . .. . . ....................... .... . . ..... . . .... .............................................................. . . . .. ........... ....... . . .. ... . . ... . ... ..... . ........................................................ .. . ...... . .. . . .. . . ... . . . .. . . .. . . . . . ....... . ...... .... ...... . . .......... .. .... . .... ............. . ................ . ........ . . ... . . ... ... ..... ... . ... . . . . . . . .. . . . ...
lowQualScore : 6666666666 7 7 0 2 888888 0 2 2 0 2 5555 0000000000000000 0 0 00 0 0 5 7 0 4 000 2 4 8888 888 6 0 0 0 0 0 2 5 00 3 7777 777777 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 0 5 0 7 0 000 0 00 33 33333 0 555 555 88 0 0 2 88 5 8 33333333333333333333333 1111 0 7 66666 5 7 2222 88888888888888888888888888888888888888888888888888888888888888 8 7 3 66 77777777777 9999999 7 5 22 111 3 0 888 0 222 55555 0 88888888888888888888888888888888888888888888888888888888 88 2 000000 5 88 0 2 88 0 5 222 8 0 5 88 7 3 33 0 7 3 3 3 3333333 7 777777 0000 000000 3 3 3333333333 33 8888 5 5555 5555555555555 0 0000000000000000 5 00000000 5 5 000 5 0 000 555 55555 333 7 777 3 3 7 3 7 3 0 33 7 7 3 777
consensus : NNNTGAACTAGATGCTGTCATA------A-GACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAANATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAGNAGGTCGAGAAAA----CGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGGCCNATTGCACATNTAGCATACTCTAT-CAACATATATTCTTGCTGCACGTGTCGAGATGCNCTGAGTATTCTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--T-AGGCC--C--CTGACTACCT-----AAATC---AGACATGTT-ACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTCTCACTCCATTTGCNCCTCAAGGTGAAAA--AGAAAATTCCGAAAACTTA-T-GCA-CAT--CTTAT----AGG----ACACCACCAATCAATTGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGAGGAG-TCTGGGAACCA--A-G--TN--TTNT--T-G---AAAGAAANACG------T--TTTNA-AACCCCANTTTGNCCCCA---GTGA----GAAAAT------GAAAATTCTGAAANCTTATTGCNCATTTACAGG-ACACC---ACC-AATCATCTT-C-CAAAAG-----ATNATTTGGCCACTGCG--------TAA--AA--TG-TA--A-GA-G----TTCTG-GGAACCA----G-TTTTA--TCGAAAA--AA--CGTCG--TTTTCGATCC--CCAGGGTGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACATTACCAATNATCTT-CTAA-AAAAG-ATG--TT--GGNTACTGCGTAA-TTGTAA-AGAATGTTTTAGG---AGTTTT-TATTTATTAT----------TTTT--TTTTACATGTCTTNTTTTNNGNCCTAAAATTTGGGCNNCANGGTGAAAATGAAAATTCCGAAATCATATTGCACACNTATATAAAAAGNACACCACCGACNATCGATTCCCAAAANATGACTTGGTTAACTACTGCGTAAAATCTTGTAACTAAGAAAAAAA---CGTCGTTTTTC--AC-CCCTT-TTGGCCCCCAGGGTAAAAACG-AAAATTCCG-AAACCTTATTGCACAT--CTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
Reference ( family-4986 ) : NNNTGAACTAGATGCTGTCATA------AAGACAGCAATACCCGCACGCAAGTGTTT-GCTTNTCAAAATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAGNNNGTCGAGAAAAACGTCGCGTT--TTAACCCCATTTGGNCCCCAGGATGAAAANNAAAATTCCGAAAACTTATTGCTCATCTA-CATACTCTAT-CAATATATATTCTTGCTGCACGTGCCGAGATGCTCTGAGTATTCNGNTGGGNAAGTG-CCCCGAGGTAATCCCAAACATTATTTCATAATTGTNGGAATAGTATTTAAAACGTA--T-AGGCCTACTACTGACTACCTTCGCAAAATCTCAAAACATGTTNACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTCCCAACCTTTAAAGTAAATATATTCTT-GTTGCACATGACGCAACGCAATGATGANCACCGGGTTTTT-----GTTCGTTNTTTTCCCACTNCATTTGCCCCCCAGGGTGAAAA--AGAAAATTCCGAAAACTTA-T-GCA-CAT--CTTAT----AGG----ACACCACCAATCAATTACCTCCCAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCATTA-G--TA--TTNT--TNG---AAAAAAANACG------T--TTTTA-AACCCCAATTTGCNCCCA---GTGA----GAAAAC------GAAAATTCCGAAACCTTATTGCNCATTTATAGG-ACACC---ACC-AATCATCTT-C-CAAAAG-----ATNATTTGGCTACTGCG--------TNA--AA--TG-TA--A-GG-G----TTCTG-GGAACCAA--GGGTTTTA--TCGAAAA--AA--CGTCG--TTTTTNATCC--CCANGGTGAAAAAGAAAATTCCGAAAACTT--ATTGCACATCTACAGG-ACACCACCAATNACCTT-CTAA-AAAAG-ATG--TT--GGCTACTGCGTAANNTGTAAGAGAATGTTTTGGGACCAGTTTT-TATTTATTAT----------TTTT--TTTTACA-GTCTTCTTTTTNAACCT--CATTTGGNCCCCANGGTGAAAATGAAAATTCCGAAA-CTTATTGCACATCTACAT----AGGACACCACCAATCATC---TTCCAAAAGATGATTTGGCTAACTACTGCGTAAAAT-TTGTAACTNAGAAAAAAA---CGTCGTTTTT---AC-CCCTT-TTGGCCCCCAGGGTGAAAATG-AAAATTCCG-AAACCTTATTGCNCAT--CTACGGGACACCACCAATCATCTTCCAAAAAGATGATTTGGCTACT
gi|1 : TGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTT-GCTTGTAAAAATATACTCTTTGTCGTACTTG-TGTAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAA----CGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCAATTGCATATTTA-CATACGCTAT-CAAAAAATATTCTTGCTGCATATGTCGA--TGCACGGAGTCTTTTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGCC-----CTGACCCCCT-----AAATC---AGATATGTT--CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCC-AACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTGTCCCTCGAGGTGAAAA--AGAAAATTCTGAAAACTTAAT-GCA-CAT--CTTAT----AGG----ACACCATCAATTAATTACCTTTGGAAAGA-TGATTTGGCTA----GTGCACAAAATGTAAGAGAAGTTCTGGGAACTATTAAG--TAAGTTAT--TTG---AAAGAAAAACG------T--TTTGA-AACCCCAACTTGCACCCA---ATGA----GAAAAC------GAAAATTCTGAAACCTTATTGCTCATTTATAGG-ACACT---ATC-AACAACCTT-C-CAAAAG-----ATTATTTGACCACTGCG--------TTA--AC--CG-TA--A-GA-G----TTCTG-GAAACCAAGGGGGTTTTA--TCGAAAA--AA--CGTCG--TTTCTGATCC--TCATGATGGAAAAGGAAATTCCGAAAACCA--ATTGCATATCTACAGG-ACATTACCAATAACCTT-CTAA-AAAAG-ATG--TTAAGGATAATGAGTAATTTGTAAGAGAATGTTTTAGAACCAGTTCT-TATTTATTAT----------TTTT--TTTTACATGTCTTCTTTTTTAACCTAAAATTTGGGCGTCATAGTGAAAATGAAAATTCCGAAATCATATTACACACATATATAAAAAGGACACCACCGATCATC---TTCCAAAATATGACTTGGTTAATTACTGCGTAAAATCTTGTAACTAAGAAAAAAATGTCGTCGTTTTT---AC-CCTTT-TTGACACTAAGGGTAAAAACG-AAAATTCTG-AAACTTTATTGCACAC--CTACAAGACACCACCGATCATTTTCTAAAGAGATGAACTGGTTACT
gi|10 : caaTGAACTAGATGCTGTTATG------AGG-CAGTAATACCCACACGCAAGTGCTT-G--TCTTGAATCATACTCTACATCGTACT---------------AGAAGCCACA
gi|10 : AAGTTTATTAC-CACCTAGCATAATCTATTCCATATATATTCTTGTTGCACCTGTC--------------ATTCTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAcaagtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|11 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacAAAGAAA---CTTCGTTTTTCA-AC-CCCTCATTGGCCCCCAGGGTAAGATTGTAAGATTTCTTAAACCTTATTATACATGTCTATGGAACACCATCAATTACCTTCCAAAA----GATTTGGC
gi|12 : aaagttgtggaaaccttatttttctatACTAGATGCTGTTACA------A-GACAGCAATACCTGCCTGTAAGTGGTT-GCCTTT--AGATGTACTCTACTTTATACTTT-TGTAAATAGCAAAGAAGCCACA-ATAGTCAA
gi|14 : TTTGC-CCCA---G-GA----TAAAAT------AAAAATTCTGA--------------TTTATAGG-ACACC-------AATCATCTT-C-CAACAC-----ATAATTTGACTACTACG--------TAATTAAATTG-TACCA-GACG----TTCAA-GGAACCActtataccaggctattctata
gi|15 : atTGGATGCTGTCATA------A-GACAGTGATACCCACACGCAAGTGTCT-CCTT--CCAAATGCCCTCTCCGTCGTTCTTG-TGTATTTAGCAAAGAtaagtt
gi|16 : aAGATGTTGTCATA------A-GACAGCAATACTTACAAGAAAGTGTTT-GTCTTTCATTATATATTCTT--TTGTTCCTG-GGTAACTAAATAACGAGCCATAATAGGtattttataatttac
gi|17 : g-CATACTCTATACTGTATATATTCTTGCTGCATATGTCGAGATGTAGTGCATATTCTGTTAGGCAAGTA-CTTTGTGGTAATC
gi|18 : AATATATCCTT-GTTGCACATGACACAac
gi|18 : agatCCTTGTTGCACAT-----GACACACT---ACCAAATCATCTC-T-GAAAAGAAAATATAATTTTGTTACTGCA--------CAA--AA--TG-Tctaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|19 : agataatatatACTGAATGTTGTCATA------A-GACAGCAATACCCGCACACAAATGTTT-G-TTGTTA
gi|2 : TCC--TCAAGGTGAAAAAGACAATTTCATAATCTT--ATTGCACAGCTA-AGGCACACTACCAATCATCTC-CTAA-AGGATTAT---TT--GGTTACTGCATAAATTGTA------TATTTTA--------TTT-TATTTTTTATCCCCAAAAAATATTGGTTTT----GTTTTGTTTTGGGTTTT----TTTG---CACAAGGTGAAAAT----------------TATTGCACATCTA-AT-----GTACACCACCAACAATCGATTCCCAAAAGATGATTTGG-TAACT---GTGTAAAAT---GTAA------AAATAG---CAACATTTTTTCAACTCCCAT-TTGGGCCCCAGTGTGAAAATG-AAAATTCTG-AAACCCAATTGCTCAT--CTACAGGCCCTCACTTGTCATCTTTC-AAAAGGTAATTTGGCTACTtatggatgcctctacct
gi|2 : GAAAA-TTA-TTGCA-CAT--CTAAT-----GT----ACACCACCAA-CAATCGATTCCCAAAAGA-TGATTTGGTAA----CTGTGTAAAATGTAAAAA------TAGCAAC----------A--TTTT-----------------------------TTCA-ACTCCCATTTGGGCCCCA---GTGT----GAAAAT------GAAAATTCTGAAACCCAATTGCTCATCTACAGG-CCCTC---ACT-TGTCATCTT-T-CAAAAG-----GTAATTTGGCTACTGCT--------TAT--AA--TG-TA--A-AA-------TGTA-AAATCCAC--TGCATTTA--TAGAAAA--AA--AGTTGCTTTTTCGACAC--CCAGGGT-AAAATTGAAGTTCCAAAACTTT--ATTACACATgcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|20 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggttttgttttgttttgggtttttttgcacaaggtCAAGTGTTT-GTCTAT-AAAA-ATACTATCCGTCGTACTTG-TGTCATTATCGAGGAAGCAACAGTAGGattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|21 : ACTAGATATAGTCATC------A-GACAGTAATCCTCGCCCGTGAGTGTTTAACTTT---ATATATACTC
gi|22 : TAGG-ACACC---ACC-AATCATCTT---CAAAAG-----ATTATTTGGCAACTGAG--------TAA--A
gi|3 : g-T-ACA-TAT---TTAT----AGG----ACGCCA---AT-AACTGCTTACGAAAAGA-TGATTTGGCTAACTACTGCGTAAAATGTA-------------GAACCAA-A-GGCTG--TTTTCGTTG---AAAAA--CGTG------T--TTTAA-AACCTCA-TTTGGCCCCATGGATGAAATTGAAAACATGAATGAAAATTCCGAAAACTTATTGCGCATCTGCAGA-TCACTTGTACC-AGATATCCC-CTCAAAAG-----TTGATTTGGCTACTTTG--------TAA--AT--TG-TA--C-GA-G-------------ACCA------TTTTA--TTTATAA--AT--C--CA--TTTTTTTTTCTTCCGGGGTGAAAAA-----TCCCAAAACCTTGAATTGTACATCTACAGA-ACATCACCAATGATCTTCCTAATAAAAG-ATGAATT--GGCTACTGC-----TTTTAA-AAAATGTATTAGG---AGTTTCATATTTATT-T----------TTTA--TTTTA
gi|4 : ctgatTTTTTTTTTGACTTCATTTGGATCCCAGGATAAAAACTAAAAAAT-CCGAGAACTTG-T-GCATCA------AC----AGG----GCACCACCAATCA-TT--CTCCAAAAAAAATAGT----CTA----TTGCGAAATATTCATGAGAAGGTCTGGGAATCA--G-G--TT--TTTT--TAACACAGAGAAAT-CGAGTTTTT--TTTTA----CCCATTTTGTCCTTA---TGGT----GAAAAT------GAACATTTTGAATTTTTATTCTACATTGATGGG-ACACC---ACT-AATTTCCCT-C-TAAAAA-----CTTAATTAGTCACTGGGGGTTTTTTTTA--AA--CG-----A-GG-A----TTTTGAGGAAgaaaaaccagattttg
gi|5 : tgaaagaggagtttggggaacattttttttactggaaataaatcttttATTCTGAAACCTTA-TTATA-TAT--CT-AT----AGG----ACACCACCAATTAA----CATGCAAAAGA-TGATTTGGCTA----CTGTGTAAAATGTGAGGGGAG----GGG-----TT---------TTGG--TAA---AAAAAATCACGTCGTT-T--TTTTA-AACCCCAGTTTGGGGACA---GGAA----GAAAAT------GAAAACTCTGAAAAC----------TTTACAAG-ACACC---GTC-AATCATCTTCC-CAAAAA-----ATTATTTCGTCTCT-----------TGA--TA--TATTA--ATGA-GATACTTCTT-TGAAC--------TTTTGTTTTGAAAAGTAAGCCGTCG--TTTTCGAaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|6 : GTCA-G------AAGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATATAT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACAcagctattttgttcccagggt
gi|6 : taattagaattaTACTCAAT--AACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATTCAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTGTA-GAATAGTATTTAAAACGTA--T-AGGC---CTACTGACTACCTTCGCAAAAT-------CATGTT-ACCTGatattatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttaccacattacatgtagcatTAGATATTGTCA-G------AAGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAA--TATTCTTTCCATCGTACTTG-TCTAACTAGCAAAGAAGCCACA
gi|7 : tCATGTAGCATACTCAAT--AACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATTCAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--T-AGGCCTAC--CTGACTACCT--------TCTCAAAACATGTTTACCTGTatattatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|8 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacataTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAAACAATTTTCCCTTCAAGCTGAAAA--A-AAAATCTCGATAACTT--T-GT-----------------GG----ACACCACCAATCA----TCTCTCAAAACA-AGATTTGGCTA----CTACGTAAAATGCAA-AGGGGTTCTTGGATCTA--A-G--TT--TTAC--C------AAGAAAAACG------TCGCTTTACAACCCCAACTGGCCCCCA----TGAT---GAAACT------GAAAATTCTGAAAACTTAgtggta
gi|9 : acatgATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT--------TATTGCTTATTGGAAGGACGTACACCGACAATCATCTACCat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATATTTGTACCGCATGTCTAGATGCATTGCGCATTTCTGTTGGGTAATCTCAATATTCATTTCAAAATAGATGAGACATATTTTAAAAATTGAGTTCCTGAGCCCCAAATCATATGTTC
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111 222 1 1 111 1111 1 11 444444444444444 1 1 1 1 111 22222 111 2222 44444444444444444444444 1111 22222222222 1111 1111111111111111111111111111111111111111111111111111111111111111111 33333333333 1111 111 11111 1111 11 444444444444444444444444 11 111111 11 33333333333 11 111 11 1 1 1 1 2222222 33333 2222 33333 1 555555555 11 111 2222 22222 5555555555555555 1 22222 222 33333 222 222 11 33 1 1 1 11
lowQualScore : 4444444 0 4 2222 2 0 2 5 0 33 6 1 3 1 2 8 1 777 1 77 6 44 3 6 6 7777777 1 9 0 777 0 7777 0 00 999999999999999 0 7 5 1 0 2 0 2 333 7 0 55555 6 000 333 1 3 0000 5 1 55555555555555555555555 2222 3 1 22222222222 6 4444 0000000000000000000000000000000000000000000000000000000000000000000 1 6 6 44444444444 5 2222 3 22 555 1 0 888 5 000 22222 1 1 6666 99 11 777777777777777777777777 33 4 666666 2 33 88888888888 1 11 2 222 0 0 33 6 3 1 3 3 3 5555555 1 55555 3333 33333 3 7 333333333 88 222 1 22 1 4444 22222 1 8888888888888888 1 5 77777 1 1 111 1 55555 111 111 1 3 6 88 11 3 0 3 0 3 88 0 3 7 999
lowQualScore : ....... . . .... . . . . . .. . . . . . . . ... . .. . .. . . . ....... . . . ... . .... . .. ............... . . . . . . . . ... . . ..... . ... ... . . .... . . ....................... .... . . ........... . .... ................................................................... . . . ........... . .... . .. ... . . ... . ... ..... . . .... .. .. ........................ .. . ...... . .. ........... . .. . ... . . .. . . . . . . ....... . ..... .... ..... . . ......... .. ... . .. . .... ..... . ................ . . ..... . . ... . ..... ... ... . . . .. .. . . . . . .. . . . ...
lowQualScore : 4444444 7 0 0000 0 2 2 0 2 77 0 0 2 0 5 0 4 000 4 33 2 33 0 7 7 5555555 0 8 0 000 2 8888 0 00 000000000000000 0 3 0 0 0 5 7 0 000 3 7 00000 5 222 888 0 2 0000 7 8 22222222222222222222222 1111 0 7 00000000000 7 2222 7777777777777777777777777777777777777777777777777777777777777777777 0 6 6 33333333333 7 1111 0 22 111 4 2 888 0 222 55555 0 1 1111 22 00 777777777777777777777777 88 2 000000 5 88 00000000000 4 00 5 000 8 2 88 7 3 0 3 3 3 3333333 0 77777 3333 77777 3 3 333333333 33 888 0 00 0 5555 00000 0 0000000000000000 0 5 55555 0 0 000 0 55555 000 000 0 7 7 33 77 3 7 3 7 3 33 7 7 3 333
consensus : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCAATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-AGATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT--TTT-N-TTGA----AAGAAA-CACG------T---TTTNAAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATTTACAGGACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTTGGCCACTGCGTA-A--AA--TGTA--AGA-GTTCTAGGAACCA------T---TTTA--TCGAAAA--AA--CGTCG--TTTTCGA-----------TCC--CCAGGGTGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACATTACCAATNATCTT-CTAA-AAAAG-ATG--TT--GGNTACTGCGTAA-TTGTAA-AGAATGTTTTAGG---AGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTTNTTTTNNGNCCTAAAATTTGGGCNNCANGGTGAAAATGAAAATTCCGAAATCATATTGCACACNTATATAAAAAGNACACCACCGACNATCGATTCCCAAAANATGACTTGGTTAATTACTGCGTAAAATCTTGTAACTAAGAAAGAAACGTCGT--TTTTCAA-CCCCTT-TTGGCCCCCAGGGTAAAAACG-AAAATTCCG-AAACCTTATTGCACAT--CTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
Reference ( family-4986 ) : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAANATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAGNAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGGCCNATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTCGAGATGCNCTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TAGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTCTCACTCCATTTGCNCCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGAGGAG-TCTGGGAAC---CAA-----GT--NTT-N-TTGA----AAGAAA-NACG------T---TTTNAAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATTTACAGGACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTTGGCCACTGCGTA-A--AA--TGTA--AGA-GTTCTGGGAACCA-----GT---TTTA--TCGAAAA--AA--CGTCG--TTTTCGA-----------TCC--CCAGGGTGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACATTACCAATNATCTT-CTAA-AAAAG-ATG--TT--GGNTACTGCGTAA-TTGTAA-AGAATGTTTTAGG---AGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTTNTTTTNNGNCCTAAAATTTGGGCNNCANGGTGAAAATGAAAATTCCGAAATCATATTGCACACNTATATAAAAAGNACACCACCGACNATCGATTCCCAAAANATGACTTGGTTAACTACTGCGTAAAATCTTGTAACTAAGAAAAAAACGTCGT--TTTTCA--CCCCTT-TTGGCCCCCAGGGTAAAAACG-AAAATTCCG-AAACCTTATTGCACAT--CTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
gi|1 : TGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTT-GCTTGTAAAAATATACTCTTTGTCGTACTTG-TGTAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCAATTGCATATTTA-CAT-ACGCTAT-CAAAAAATATTCTTGCTGCATATGTC--GATGCACGGAGTCTT-TTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGC--C-CTGA-CCCCCT-----AAATC---AGATATG-TT-CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATT-CCAACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTGTCCCTCGAGGTGAAAA--AGAAAATTCTGAAAACTTAAT-GCA-CAT--CTTAT----AGG----ACACCATCAATTAAT-TACCTTTGGAAAGA-TGATTTGGCTA----GTGCACAAAATGTAAGAGAAGTTCTGGGAACTATTAA-----GTAAGTTAT-TTGA----AAGAAA-AACG------T---TTTGAAACCCCAACTTGCACCCA-----A----TGA-GAA----AACGAAAATTCTGAAACCTTATTGCTCATTTATAGGACACT---ATCAA-CAACCTT-C-CAAAAGA-----TTATTTGACCACTGCGTT-A--AC--CGTA--AGA-GTTCTGGAAACCAAGGGGGT---TTTA--TCGAAAA--AA--CGTCG--TTTCTGA-----------TCC--TCATGATGGAAAAGGAAATTCCGAAAACCA--ATTGCATATCTACAGG-ACATTACCAATAACCTT-CTAA-AAAAG-ATG--TTAAGGATAATGAGTAATTTGTAAGAGAATGTTTTAGAACCAGTTCT-TATTTATTATT---------TTTT--TTTACATGTCTTCTTTTTTAACCTAAAATTTGGGCGTCATAGTGAAAATGAAAATTCCGAAATCATATTACACACATATATAAAAAGGACACCACCGATCATC---TTCCAAAATATGACTTGGTTAATTACTGCGTAAAATCTTGTAACTAAGAAAAAAATGTCGTCGTTTTTA--CCCTTT-TTGACACTAAGGGTAAAAACG-AAAATTCTG-AAACTTTATTGCACAC--CTACAAGACACCACCGATCATTTTCTAAAGAGATGAACTGGTTACT
gi|10 : caaTGAACTAGATGCTGTTATG-------AGGCAGTAATACCCACACGCAAGTGCTT-G-TCTTGAAT-CATACTCTACATCGTACT---------------AGAAGCCACACAAG
gi|10 : ATTAC-CACCTAGCAT-AATCTATTCCATATATATTCTTGTTGCACCTGTC--------------ATT-CTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|11 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacaagtttAAAGAAACTTCGT--TTTTCAA-CCCCTCATTGGCCCCCAGGGTAAGATTGTAAGATTTCTTAAACCTTATTATACATGTCTATGGAACACCATCAATTACCTTCCAAAA----GATTTGGC
gi|12 : aaagttgtggaaaccttatttttctatACTAGATGCTGTTACA-------AGACAGCAATACCTGCCTGTAAGTGGTT-GCCTTT--AGATGTACTCTACTTTATACTTT-TGTAAATAGCAAAGAAGCCACAATAG
gi|13 : ATATTTGTACCGCA--TGTCTAGATGCATTGCGCATTTCTGTTGGG---------------TAATCTCAATATTCATTTCAAAATAGATGAGACA-TATTTTAAAAAT---TGAGTT--C-CTGAGC--CCC-----AAATC-----ATATG-TTtcaacttataccaggctattctata
gi|14 : aATTTTG-CCCCA-----G-----GA-TAA----AATAAAAATTCTGA--------------TTTATAGGACACC------AA-TCATCTT-C-CAACACA-----TAATTTGACTACTACGTA-ATTAAATTGTACCAGACGTTCAAGGAACCA-----c
gi|15 : TGGATGCTGTCATA-------AGACAGTGATACCCACACGCAAGTGTCT--CCTTCCAA-ATGCCCTCTCCGTCGTTCTTG-TGTATTTAGCAAAGAtaagtt
gi|16 : aAGATGTTGTCATA-------AGACAGCAATACTTACAAGAAAGTGTTT-GTCTTTCATTATATATTCTT--TTGTTCCTG-GGTAACTAAATAACGAGCCATAATAGGtattttataatttac
gi|17 : gCAT-ACTCTATACTGTATATATTCTTGCTGCATATGTCGAGATGTAGTGCATATT-CTGTTAGGCAAGTA-CTTTGTGGTAATC
gi|18 : AATATATCCTT-GTTGCACATGACACAac
gi|18 : agatCTTGTTGCACATG-ACA---CACT---ACCAAATCATCTC-T-GAAAAGAAAATATAATTTTGTTACTGCACA-A--AA--TGTctaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|19 : agataatatatcACTGAATGTTGTCATA-------AGACAGCAATACCCGCACACAAATGTTT-GTTGTT
gi|2 : -----------TCC--TCAAGGTGAAAAAGACAATTTCATAATCTT--ATTGCACAGCTA-AGGCACACTACCAATCATCTC-CTAA-AGGATTAT---TT--GGTTACTGCATAAATTGTA------TATTTTA--------TTT-TATTTTTTATCCCCAAAAAATATTGGTTT---TGTTTTGTTTTGGGTTTT----TTTG---CACAAGGTGAAAAT----------------TATTGCACATCTA-AT-----GTACACCACCAACAATCGATTCCCAAAAGATGATTTGGT--A--ACTGTGTAAAAT---GTAA---AAATAGCAACAT--T--TTTTCAACTCCCAT-TTGGGCCCCAGTGTGAAAATG-AAAATTCTG-AAACCCAATTGCTCAT--CTACAGGCCCTCACTTGTCATCTTTC-AAAAGGTAATTTGGCTACTatatggatgcctctacct
gi|2 : TTTT-----GTT--TTGTTTTG--GGTTTTTTTGCAC---AAGGTGAAAA------------------TT-ATTGCA-CAT--CTAAT-----GT----ACACCACCAA-CAAT-CGATTCCCAAAAGA-TGATTTGGTAA----CTGTGTAAAATGTAA--------------------AA-----AT-----------------AGCAA-CATT------T---TTTCAACTCCCATTTGGGCCCCA-----G----TGT-GAA----AATGAAAATTCTGAAACCCAATTGCTCATCTACAGGCCCTC---ACTTG-TCATCTT-T-CAAAAGG-----TAATTTGGCTACTGCTTA-T--AA--TGTA--AAA---TGTAAAATCCA-----CTGCATTTA--TAGAAAA--AA--AGTTGCTTTTTCGA-----------CAC--CCAGGGT-AAAATTGAAGTTCCAAAACTTT--ATTACACATgcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|20 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggCAAGTGTTT-GTCTAT-AAAA-ATACTATCCGTCGTACTTG-TGTCATTATCGAGGAAGCAACAGTAGGattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|21 : ACTAGATATAGTCATC-------AGACAGTAATCCTCGCCCGTGAGTGTTTAACTTT---ATATATACTC
gi|22 : AGGACACC---ACCAA-TCATCTT---CAAAAGA-----TTATTTGGCAACTGAGTA-A--A
gi|3 : gtT-ACA-TAT---TTAT----AGG----ACGCCA---AT-AAC-TGCTTACGAAAAGA-TGATTTGGCTAACTACTGCGTAAAATGTA-------------GAAC---CAAAGGCTGT--TTT-CGTTGA----AA--AA-CGTG------T---TTTAAAACCTCA-TTTGGCCCCATGGATGAAATTGA-AAACATGAATGAAAATTCCGAAAACTTATTGCGCATCTGCAGATCACTTGTACCAG-ATATCCC-CTCAAAAGT-----TGATTTGGCTACTTTGTA-A--AT--TGTA--CGA-G--------ACCA------T---TTTA--TTTATAA--AT--C--CA--TTTTTTT-----------TTCTTCCGGGGTGAAAAA-----TCCCAAAACCTTGAATTGTACATCTACAGA-ACATCACCAATGATCTTCCTAATAAAAG-ATGAATT--GGCTACTGC-----TTTTAA-AAAATGTATTAGG---AGTTTCATATTTATT-TT---------TTAT--TTTA
gi|4 : ctgatTTTTTTTTTGACTTCATTTGGATCCCAGGATAAAAACTAAAAAAT-CCGAGAACTT-GT-GCATCA------AC----AGG----GCACCACCAATCA-T-T--CTCCAAAAAAAATAGT----CTA----TTGCGAAATATTCATGAGAAGGTCTGGGAAT---CAG-----GT--TTT-T-TTAACACAGAGAAA-T-CGAGTTTTT---TTTTA---CCCATTTTGTCCTTA-----T----GGT-GAA----AATGAACATTTTGAATTTTTATTCTACATTGATGGGACACC---ACTAA-TTTCCCT-C-TAAAAAC-----TTAATTAGTCACTGgaaaaaccagattttg
gi|5 : tgaaagaggagtttggggaacattttttttactggaaataaatcttttATTCTGAAACCTT-ATTATA-TAT--CT-AT----AGG----ACACCACCAATTAACATGC-----AAAAGA-TGATTTGGCTA----CTGTGTAAAATGTGAGGGGAG----GG---------------GT--TTT-G-GTAA----AAAAAATCACGTCGTT-T---TTTTAAACCCCAGTTTGGGGACA-----G----GAA-GAA----AATGAAAACTCTGAAAAC----------TTTACAAGACACC---GTCAA-TCATCTTCC-CAAAAAA-----TTATTTCGTCTCTTGATATATTAA--TGAG--ATA-CTTCTTTGAAC--------T---TTTGTTTTGAAAAGTAAGCCGTCG--TTTTCGACAGCTATTTTGTTC--CCAGGGTggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|6 : GTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATATAT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACAATA
gi|6 : taattagaattaACATGTAGCATTACTCAAT--AACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATT-CAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTG-TAGAATAGTATTTAAAACGTA--TAGGCC--TACTGA-CTACCTTCGCAAAAT-------CATG-TTACCTGttatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttaccacattTAGATATTGTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCA--ATATTCTTTCCATCGTACTTG-TCTAACTAGCAAAGAAGCCACAATA
gi|7 : tACATGTAGCAT-ACTCAAT--AACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATT-CAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--TAGGCCTAC-CTGA-CTACCT--------TCTCAAAACATGTTTACCTGTttatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|8 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacatTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAAACAATTTTCCCTTCAAGCTGAAAA--A-AAAATCTCGATAACTT--T-GT-----------------GG----ACACCACCAATCA-----TCTCTCAAAACA-AGATTTGGCTA----CTACGTAAAATGCAAAGGGGT-TCTTGGATC---TAA-----GT--TTT-A-CC------AAGAAA-AACG------TCGCTTTACAACCCCAACTGGCCCCCA----------TGATGAA----ACTGAAAATTCTGAAAACTTAgtggta
gi|9 : acatgATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT--------TATTGCTTATTGGAAGGACGTACACCGACAATCAat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1 1 111 222 222 1 111 1111 1 11 444444444444444 1 1 1 1 111 22222 2222 44444444444444444444444 1111 22222222222 1111 0000000000000000000000000000000000000000000000000000000000000000 33333333333 1111 11111 111111 555555555555555555555555555555 3333333333 11 1111 11 3333333333333333333 111111 11111 11 11 11 1 111 1 333 11 2222222 222222 55555555555555555555555555555555 222222 5555555555555 444444444444444444 5555555 333 44444444444444444444 2222 2222 22222 1111111 1 11 1 11
lowQualScore : 4444444 0 4 0 5 4 0 2 5 0 3 333 1 2 8 1 777 1 77 555 44 3 6 6 7777777 1 9 0 777 0 7777 0 00 999999999999999 0 7 5 1 0 2 0 2 333 7 0 55555 6 888 111 0 3 0000 5 1 55555555555555555555555 2222 3 1 22222222222 6 4444 0000000000000000000000000000000000000000000000000000000000000000 1 6 6 22222222222 55 0000 2 0 4 0 2 4 777 4 888 11111 1 1 5 444444 333333333333333333333333333333 3333333333 11 2222 11 9999999999999999999 999999 77777 8 11 8 00 1 33 0 000 0 000 33 1 7777777 000000 0 3 00000000000000000000000000000000 000000 88 22 1 2222222222222 11 666666666666666666 11 5555555 1 3 11 777 0 1 0 99999999999999999999 9999 3333 00000 6 5555555 0 0 2 66 33 0 22 33 0 3 7 999
lowQualScore : ....... . . . . . . . . . . ... . . . . ... . .. ... .. . . . ....... . . . ... . .... . .. ............... . . . . . . . . ... . . ..... . ... ... . . .... . . ....................... .... . . ........... . .... ................................................................ . . . ........... .. .... . . . . . . ... . ... ..... . . . ...... .............................. .......... .. .... .. ................... ...... ..... . .. . .. . .. . ... . ... .. . ....... ...... . . ................................ ...... .. .. . ............. .. .................. .. ....... . . .. ... . . . .................... .... .... ..... . ....... . . . .. .. . .. .. . . . ...
lowQualScore : 4444444 7 0 0 8 6 2 2 0 2 3 666 0 5 0 4 000 4 33 888 77 0 7 7 5555555 0 8 0 000 2 8888 0 00 000000000000000 0 3 0 0 0 5 7 0 000 3 7 00000 5 000 666 6 2 0000 7 8 22222222222222222222222 1111 0 7 00000000000 7 2222 0000000000000000000000000000000000000000000000000000000000000000 0 6 6 66666666666 88 6666 8 8 5 1 2 4 888 4 000 11111 0 7 0 555555 222222222222222222222222222222 4444444444 00 4444 00 7777777777777777777 222222 88888 2 00 8 22 0 88 0 222 0 000 88 0 8888888 888888 2 5 88888888888888888888888888888888 222222 33 00 0 3333333333333 77 000000000000000000 77 0000000 0 7 77 333 7 0 7 33333333333333333333 0000 3333 22222 5 2222222 2 0 5 00 22 0 22 88 7 7 3 333
consensus : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTAA----AAGAAA-CG-CG------TTTTNAAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTTGGCTACTGCGTA-A--AA--TGTA--AGA-GTTCT-GGAACCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TT--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAG-ATGA-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAGN---AGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCTAG--TTTG-G---CAAAGTGAAAAT----ATTCCGAAACC-TATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
Reference ( family-4986 ) : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTGA----AAGAAA-CA-CG------TTTTNAAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATTTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTTGGCCACTGCGTA-A--AA--TGTA--AGA-GTTCTAGGAACCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TC--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACATTACCAATNATC--TT-CTAA-AAAAG-ATG--TT--GGNTACTGCGT-AA-TTGTAA-AGAATGTTTTAGG---AGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTTNTTTTNNGNCCTAAAATTTGGGCNNCANGGTGAAAATGAAAATTCCGAAATCATATTGCACACNTATATAAAAAGNACACCACCGACNATCGATTCCCAAAANATGACTTGGTTAAT-----TACTG-----CGTAAAATC--TTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCCCCCAGGGTAAAAACG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
gi|1 : TGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTT-GCTTGTAAAAATATACTCTTTGTCGTACTTG-TGTAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCATATTTA-CAT-ACGCTAT-CAAAAAATATTCTTGCTGCATATGTC---GATGCACGGAGTCTT-TTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGC--C-CTGA-CCCCCT-----AAATC---AGATATG-TT-CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATT-CCAACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTGTCCCTCGAGGTGAAAA--AGAAAATTCTGAAAACTTAAT-GCA-CAT--CTTAT----AGG----ACACCATCAATTAAT-TACCTTTGGAAAGA-TGATTTGGCTA----GTGCACAAAATGTAAGAGAAGTTCTGGGAACTATTAA-----GTAAGTTAT-TTGA----AAGAAA-AA-CG------TTTTGAAACCCCAACTTGCACCCA-----A----TGA-GAA----AACGAAAATTCTGAAACCTTATTGCTCATTTATAGG-ACACT---ATCAA-CAACCTT-C-CAAAAGA-----TTATTTGACCACTGCGTT-A--AC--CGTA--AGA-GTTCTGGAAACCAAGGGGGT----TTTAT---------CGAAAA--AA--CGTCG--TTTCTGA-----------TC--C--TCATGA------TGGAAAAGGAAATTCCGAAAACCA--ATTGCATATCTACAGG-ACATTACCAATAACC--TT-CTAA-AAAAG-ATG--TTAAGGATAATGAGT-AATTTGTAAGAGAATGTTTTAGAACCAGTTCT-TATTTATTATT---------TTTT--TTTACATGTCTTCTTTTTTAACCTAAAATTTGGGCGTCATAGTGAAAATGAAAATTCCGAAATCATATTACACACATATATAAAAAGGACACCACCGATCATC---TTCCAAAATATGACTTGGTTAAT-----TACTG-----CGTAAAATC--TTGTAACTA-AGAAAAAAATGTCGTCGTTTTT--AC-CCTTT-TTGACACTAAGGGTAAAAACG-AAAA-TTCTGAAACTTTATTGCACA--CCTACAAGACACCACCGATCATTTTCTAAAGAGATGAACTGGTTACT
gi|10 : caaTGAACTAGATGCTGTTATG-------AGGCAGTAATACCCACACGCAAGTGCTT-G-TCTTGAAT-CATACTCTACATCGTACT---------------AGAAGCCACA
gi|10 : -ATTAC-CACCTAGCAT-AATCTATTCCATATATATTCTTGTTGCACCTGTC-A--------------TT-CTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAcaagtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|11 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacaagtttAAAGAAA---CTTCGTTTTTCAAC-CCCTCATTGGCCCCCAGGGTAAGATTGTAAGATTTCTTAAACCTTATTATACATGTCTATGGAACACCATCAATTACCTTCCAAAA----GATTTGGC
gi|12 : aaagttgtggaaaccttatttttctatACTAGATGCTGTTACA-------AGACAGCAATACCTGCCTGTAAGTGGTT-GCCTTT--AGATGTACTCTACTTTATACTTT-TGTAAATAGCAAAGAAGCCACAATAG
gi|13 : ATATTTGTACCGCA--TGTCTA-GATGCATTGCGCATTTCTGTTGGG---------------TAATCTCAATATTCATTTCAAAATAGATGAGACA-TATTTTAAAAAT---TGAGTT--C-CTGAGC--CCC-----AAATC-----ATATG-TTtcaacttataccaggctattctata
gi|14 : aATTTTG-CCCCA-----G-----GA-TAA----AATAAAAATTCTGA--------------TTTATAGG-ACACC------AA-TCATCTT-C-CAACACA-----TAATTTGACTACTACGTA-ATTAAATTGTACCAGACGTTCAAGGAACCA------T----c
gi|15 : TGGATGCTGTCATA-------AGACAGTGATACCCACACGCAAGTGTCT--CCTTCCAA-ATGCCCTCTCCGTCGTTCTTG-TGTATTTAGCAAAGAaagtt
gi|16 : aAGATGTTGTCATA-------AGACAGCAATACTTACAAGAAAGTGTTT-GTCTTTCATTATATATTCTT--TTGTTCCTG-GGTAACTAAATAACGAGCCATAATAGGtattttataatttac
gi|17 : gCAT-ACTCTATACTGTATATATTCTTGCTGCATATGTCGA-GATGTAGTGCATATT-CTGTTAGGCAAGTA-CTTTGTGGTAATC
gi|18 : AATATATCCTT-GTTGCACATGACACAac
gi|18 : agatCTTGTTGCACATG-ACA----CACT---ACCAAATCATCTC-T-GAAAAGAAAATATAATTTTGTTACTGCACA-A--AA--TGTctaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|19 : agataatatatcACTGAATGTTGTCATA-------AGACAGCAATACCCGCACACAAATGTTT-GTTGTT--ATAT
gi|2 : -----------TC--C--TCAAGG------TGAAAAAGACAATTTCATAATCTT--ATTGCACAGCTA-AGGCACACTACCAATCATC--TC-CTAA-AGGATTAT---TT--GGTTACTGCAT-AAATTGTA------TATTTTA--------TTT-TATTTTTTATCCCCAAAAAATATTGGTTT---TGTTTTGTTTTGGGTTTT----TTTG---CACAAGGTGAAAAT----------------TATTGCACATCTA-AT-----GTACACCACCAACAATCGATTCCCAAAAGATGATTTGGT--A-------ACTG-----TGTAAAAT-----GTAA----AAATAGCAA---CAT--TTTTTCAACTCCCAT-TTGGGCCCCAGTGTGAAAATG-AAAA-TTCTGAAACCCAATTGCTCA--TCTACAGGCCCTCACTTGTCATCTTTC-AAAAGGTAATTTGGCTACTggatgcctctacct
gi|2 : CCTCA-----A----GGT-GAA----AAAGACAATTTCATAATCTTATTGCACAGCTA-AGGCACACT---ACCAA-TCATCTC-C-TAAAGGA-----TTATTTGGTTACTGCATA-A--AT--TGTAT-A----TTTT-------A------T----TTTATTTTTTATCCCCAAAA--AA--TATTG--GTTTTGT-----------TTTGT--TTTGGGTTTTTTTGCACAAGG-----TGAAAA--TT--ATTGCACATCTAATGT-ACACCACCAACAATCGATT-CC-C-AAAAG-ATGATTT--GGTAACTGTGTAAA-ATGTAA-AAA------TAGC---AA------------CATT---------TTTT------CAACTCCCA-TTTGGGCCCCAG----TGTG----AAAATGAAA------ATTCTGAAACCCAATTGCTCATCTAC------AGGCCCTCACTTGTCATC---TTTCAAAAGGTAATTTGGCTACTGCTTATAATGTAAAATGTAAAATCCACTGCATTTATAGAAAAAAA----GTTGCTT----------TT-TCGACACCCAGGGTAAAATTG--AAG-TTCCAAAACTTTATTACACA--Tgcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|2 : tTTTT-----GTT--TTGTTTTG--GGTTTTTTTGCAC---AAGGTGAAAA------------------TT-ATTGCA-CAT--CTAAT-----GT----ACACCACCAA-CAAT-CGATTCCCAAAAGA-TGATTTGGTAA----CTGTGTAAAATGTAA--------------------AA-----AT-----------------AGCAA-CA-TT------TTTTCAACTCCCATTTGGGCCCCA-----G----TGT-GAA----AATGAAAATTCTGAAACCCAATTGCTCATCTACAGG-CCCTC---ACTTG-TCATCTT-T-CAAAAGG-----TAATTTGGCTACTGCTTA-T--AA--TGTA--AAA---TGTAAAATCCA------CTGCATTTAT---------AGAAAA--AA--AGTTGCTTTTTCGA-----------CA--C--CCAGGG------T-AAAATTGAAGTTCCAAAACTTT--ATTACACATattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|20 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggCAAGTGTTT-GTCTATAAA-A-ATACTATCCGTCGTACTTG-TGTCATTATCGAGGAAGCAACAGTAGGattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|21 : ACTAGATATAGTCATC-------AGACAGTAATCCTCGCCCGTGAGTGTTTAACTTT---ATATATACTC
gi|22 : AGG-ACACC---ACCAA-TCATCTT---CAAAAGA-----TTATTTGGCAACTGAGTA-A--A
gi|3 : gtT-ACA-TAT---TTAT----AGG----ACGCCA---AT-AAC-TGCTTACGAAAAGA-TGATTTGGCTAACTACTGCGTAAAATGTA-------------GAAC---CAAAGGCTGT---TTTCGTTGA----AA--AA-CG-TG------TTTTAAAACCTCA-TTTGGCCCCATGGATGAAATTGA-AAACATGAATGAAAATTCCGAAAACTTATTGCGCATCTGCAGA-TCACTTGTACCAG-ATATCCC-CTCAAAAGT-----TGATTTGGCTACTTTGTA-A--AT--TGTA--CGA-G--------ACCA------T----TTTAT---------TTATAA--AT--C--CA--TTTTTTT-----------TT--CTTCCGGGG------TGAAAAA-----TCCCAAAACCTTGAATTGTACATCTACAGA-ACATCACCAATGATC--TTCCTAATAAAAG-ATGAATT--GGCTACTGC------TTTTAA-AAAATGTATTAGG---AGTTTCATATTTATT-TT---------TTAT--TTTA
gi|4 : ctgatTTTTTTTTTGACTTCATTTGGATCCCAGGATAAAAACTAAAAAAT-CCGAGAACTT-GT-GCATCA------AC----AGG----GCACCACCAATCA-T-T--CTCCAAAAAAAATAGT----CTA----TTGCGAAATATTCATGAGAAGGTCTGGGAAT---CAG-----GT---TTTT-TTAACACAGAGAAA-T--CGAGTTTTTTTTTA---CCCATTTTGTCCTTA-----T----GGT-GAA----AATGAACATTTTGAATTTTTATTCTACATTGATGGG-ACACC---ACTAA-TTTCCCT-C-TAAAAAC-----TTAATTAGTCACTGgaaaaaccagattttg
gi|5 : tgaaagaggagtttggggaacattttttttactggaaataaatcttttATTCTGAAACCTT-ATTATA-TAT--CT-AT----AGG----ACACCACCAATTAACATGC-----AAAAGA-TGATTTGGCTA----CTGTGTAAAATGTGAGGGGAG----GG---------------GT---TTTG-GTAA----AAAAAATCA-CGTCGTT-TTTTTAAACCCCAGTTTGGGGACA-----G----GAA-GAA----AATGAAAACTCTGAAAAC----------TTTACAAG-ACACC---GTCAA-TCATCTTCC-CAAAAAA-----TTATTTCGTCTCTTGATATATTAA--TGAG--ATA-CTTCTTTGAACTT------T----TGTTT---------TGAAAAGTAAGCCGTCG--TTTTCGACAGCTATTTTGTT--C--CCAGGG------Tggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|6 : GTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATATAT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACAATA
gi|6 : taattagaattaACCACATT--ACATGTAGCATTACTCAAT--AACATATATTCTTGCTGCACGTGCC-AAGATGCTCTGAGTATT-CAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTG-TAGAATAGTATTTAAAACGTA--TAGGCC--TACTGA-CTACCTTCGCAAAAT-------CATG-TTACCTGttatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttTAGATATTGTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATAT-T-CTTTCCATCGTACTTG-TCTAACTAGCAAAGAAGCCACAATA
gi|7 : tACATGTAGCAT-ACTCAAT--AACATATATTCTTGCTGCACGTGCC-AAGATGCTCTGAGTATT-CAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--TAGGCCTAC-CTGA-CTACCT--------TCTCAAAACATGTTTACCTGTttatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|8 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacatTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAAACAATTTTCCCTTCAAGCTGAAAA--A-AAAATCTCGATAACTT--T-GT-----------------GG----ACACCACCAATCA-----TCTCTCAAAACA-AGATTTGGCTA----CTACGTAAAATGCAAAGGGGT-TCTTGGATC---TAA-----GT---TTTA-CCAA----GAAAAA-CGTCG------CTTTACAACCCCAACTGGCCCCCA----------TGATGAA----ACTGAAAATTCTGAAAACTTAgtggta
gi|9 : acatgATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT--------TATTGCTTATTGGAAGGACGTACACCGACAATCAat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT
Alignments
lowQualScore : 1111111 1 1 111 222 222 1 111 1111 1 11 444444444444444 1 1 1 1 111 22222 2222 44444444444444444444444 1111 22222222222 1111 8888888888888888888888888888888888888888888888 22222222222 11111 33333333333 1111 11111 111111 66666666666666666666666666666666 3333333333 11 1111 11 3333333333333333333 111111 11111 11 11 11 1 111 2222222 2222222 111111 44444444444444444444444444444444 222222 111 55555555555555 66666666666666666666 55555555 222 44444444444444444444 2222 2222 22222 1111111 1 11 1 11
lowQualScore : 4444444 0 4 0 5 4 0 2 5 0 3 333 1 2 8 1 777 1 77 555 44 3 6 6 7777777 1 9 0 777 0 7777 0 00 999999999999999 0 7 5 1 0 2 0 2 333 7 0 55555 6 888 111 0 3 0000 5 1 55555555555555555555555 2222 3 1 22222222222 6 4444 2222222222222222222222222222222222222222222222 3 22222222222 55555 6 6 22222222222 55 0000 2 0 4 22 2 4 777 4 888 11111 1 4 1 5 444444 77777777777777777777777777777777 3333333333 11 2222 11 7777777777777777777 999999 77777 8 11 8 00 0 33 0 000 3 9999999 1 7777777 777777 0 3 88888888888888888888888888888888 000000 111 1 44444444444444 22222222222222222222 44444444 3 333 99999999999999999999 8888 3333 00000 6 5555555 0 0 1 1 33 0 22 33 0 3 7 999
lowQualScore : ....... . . . . . . . . . . ... . . . . ... . .. ... .. . . . ....... . . . ... . .... . .. ............... . . . . . . . . ... . . ..... . ... ... . . .... . . ....................... .... . . ........... . .... .............................................. . ........... ..... . . ........... .. .... . . . .. . . ... . ... ..... . . . . ...... ................................ .......... .. .... .. ................... ...... ..... . .. . .. . .. . ... . ....... . ....... ...... . . ................................ ...... ... . .............. .................... ........ . ... .................... .... .... ..... . ....... . . . . .. . .. .. . . . ...
lowQualScore : 4444444 7 0 0 8 6 2 2 0 2 3 666 0 5 0 4 000 4 33 888 77 0 7 7 5555555 0 8 0 000 2 8888 0 00 000000000000000 0 3 0 0 0 5 7 0 000 3 7 00000 5 000 666 6 2 0000 7 8 22222222222222222222222 1111 0 7 00000000000 7 2222 5555555555555555555555555555555555555555555555 7 55555555555 22222 6 6 66666666666 88 6666 8 8 5 44 2 4 888 4 000 11111 0 4 4 0 555555 00000000000000000000000000000000 4444444444 00 4444 00 9999999999999999999 222222 88888 2 00 8 22 8 88 0 222 2 0000000 2 8888888 222222 2 5 88888888888888888888888888888888 222222 777 0 00000000000000 00000000000000000000 00000000 7 333 33333333333333333333 7777 3333 22222 5 2222222 2 0 0 0 22 0 22 88 7 7 3 333
consensus : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTAA----AAGAAA-CG-CG-----TTTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTT-GGCTACTGCGTA-A--AA--TGTA--AGA-GTTC-TGG-AA-CCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TT--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---CAGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCT--AGTTTG-G----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
Reference ( family-4986 ) : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTAA----AAGAAA-CG-CG-----TTTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTT-GGCTACTGCGTA-A--AA--TGTA--AGA-GTTC-TGG-AA-CCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TT--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---NAGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCT--AGTTTG-G----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
gi|1 : TGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTT-GCTTGTAAAAATATACTCTTTGTCGTACTTG-TGTAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCATATTTA-CAT-ACGCTAT-CAAAAAATATTCTTGCTGCATATGTC---GATGCACGGAGTCTT-TTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGC--C-CTGA-CCCCCT-----AAATC---AGATATG-TT-CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATT-CCAACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTGTCCCTCGAGGTGAAAA--AGAAAATTCTGAAAACTTAAT-GCA-CAT--CTTAT----AGG----ACACCATCAATTAAT-TACCTTTGGAAAGA-TGATTTGGCTA----GTGCACAAAATGTAAGAGAAGTTCTGGGAACTATTAA-----GTAAGTTAT-TTGA----AAGAAA-AA-CG-----TTTTG----AAACCCCAACTTGCACCCA-----A----TGA-GAA----AACGAAAATTCTGAAACCTTATTGCTCATTTATAGG-ACACT---ATCAA-CAACCTT-C-CAAAAGA-----TTATTT-GACCACTGCGTT-A--AC--CGTA--AGA-GTTC-TGGAAA-CCAAGGGGGT----TTTAT---------CGAAAA--AA--CGTCG--TTTCTGA-----------TC--C--TCATGA------TGGAAAAGGAAATTCCGAAAACCA--ATTGCATATCTACAGG-ACATTACCAATAACC--TT-CTAA-AAAAGATG---TTAAGGATAATGAGT-AATTTGTAAGAGAATGTTTTAGAACCAGTTCT-TATTTATTATT---------TTTT--TTTACATGTCTTCTTTTTTAACCTAAAATTTG-GGCGTCATAGTGAAAATGAAAATTCCGAAATCAT-ATTACACACATATATAAAAAGGACACCACCGATCATC---TTCCAAAATATGACTTGGTTAAT-----TACTG-----CGTAAAATC--TTGTAACTA-AGAAAAAAATGTCGTCGTTTTT--AC-CCTTT-TTGACACTAAGGGTAAAAACG-AAAA-TTCTGAAACTTTATTGCACA--CCTACAAGACACCACCGATCATTTTCTAAAGAGATGAACTGGTTACT
gi|10 : caaTGAACTAGATGCTGTTATG-------AGGCAGTAATACCCACACGCAAGTGCTT-G-TCTTGAAT-CATACTCTACATCGTACT---------------AGAAGCCACA
gi|10 : -ATTAC-CACCTAGCAT-AATCTATTCCATATATATTCTTGTTGCACCTGTC-A--------------TT-CTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAcaagtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|11 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacaagtttAAAGAAA---CTTCGTTTTTCAAC-CCCTCATTGGCCCCCAGGGTAAGATTGTAAGATTTCTTAAACCTTATTATACATGTCTATGGAACACCATCAATTACCTTCCAAAA----GATTTGGC
gi|12 : aaagttgtggaaaccttatttttctatACTAGATGCTGTTACA-------AGACAGCAATACCTGCCTGTAAGTGGTT-GCCTTT--AGATGTACTCTACTTTATACTTT-TGTAAATAGCAAAGAAGCCACAATAG
gi|13 : ATATTTGTACCGCA--TGTCTA-GATGCATTGCGCATTTCTGTTGGG---------------TAATCTCAATATTCATTTCAAAATAGATGAGACA-TATTTTAAAAAT---TGAGTT--C-CTGAGC--CCC-----AAATC-----ATATG-TTtcaacttataccaggctattctata
gi|14 : aATTTTG-CCCCA-----G-----GA-TAA----AATAAAAATTCTGA--------------TTTATAGG-ACACC------AA-TCATCTT-C-CAACACA-----TAATTT-GACTACTACGTA-ATTAAATTGTACCAGACGTTCAAGG-AA-CCA------T----c
gi|15 : TGGATGCTGTCATA-------AGACAGTGATACCCACACGCAAGTGTCT--CCTTCCAA-ATGCCCTCTCCGTCGTTCTTG-TGTATTTAGCAAAGAaagtt
gi|16 : aAGATGTTGTCATA-------AGACAGCAATACTTACAAGAAAGTGTTT-GTCTTTCATTATATATTCTT--TTGTTCCTG-GGTAACTAAATAACGAGCCATAATAGGtattttataatttac
gi|17 : gCAT-ACTCTATACTGTATATATTCTTGCTGCATATGTCGA-GATGTAGTGCATATT-CTGTTAGGCAAGTA-CTTTGTGGTAATC
gi|18 : AATATATCCTT-GTTGCACATGACACAac
gi|18 : agatCTTGTTGCACATG-ACA----CACT---ACCAAATCATCTC-T-GAAAAGAAAATATAATTT-TGTTACTGCACA-A--AA--TGTctaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|19 : agataatatatcACTGAATGTTGTCATA-------AGACAGCAATACCCGCACACAAATGTTT-GTTGTT--ATAT
gi|2 : -----------TC--C--TCAAGG------TGAAAAAGACAATTTCATAATCTT--ATTGCACAGCTA-AGGCACACTACCAATCATC--TC-CTAA-AG--GATT-A-TTT-GGTTACTGCAT-AAATTGTA------TATTTTA--------TTT-TATTTTTTATCCCCAAAAAATATTGGTTT---TGTTTTGTTTTGGGTTTT----TTTGCA----CAAGGTGAAAAT----------------T-ATTGCACATCTA-AT-----GTACACCACCAACAATCGATTCCCAAAAGATGATTTGGT--A-------ACTG-----TGTAAAAT-----GTAA----AAATAGCAA---CAT--TTTTTCAACTCCCAT-TTGGGCCCCAGTGTGAAAATG-AAAA-TTCTGAAACCCAATTGCTCA--TCTACAGGCCCTCACTTGTCATCTTTC-AAAAGGTAATTTGGCTACTggatgcctctacct
gi|2 : CCTCA-----A----GGT-GAA----AAAGACAATTTCATAATCTTATTGCACAGCTA-AGGCACACT---ACCAA-TCATCTC-C-TAAAGGA-----TTATTT-GGTTACTGCATA-A--AT--TGTAT-A----TTT-T--------A------T----TTTATTTTTTATCCCCAAAA--AA--TATTG--GTTTTGT-----------TTTGT--TTTGGGTTTTTTTGCACAAGG-----TGAAAA--TT--ATTGCACATCTAATGT-ACACCACCAACAATCGATT-CC-C-AAAAGATG-ATTT--GGTAACTGTGTAAA-ATGTAA-AAA------TAG---CAA------------CATT---------TTTT------CAACTCCCA-TTTGGGCCCC--AGTGTG-------AAAATGAAA------ATTCTGAAACC-CAATTGCTCATCTAC------AGGCCCTCACTTGTCATC---TTTCAAAAGGTAATTTGGCTACTGCTTATAATGTAAAATGTAAAATCCACTGCATTTATAGAAAAAAA----GTTGCTT----------TT-TCGACACCCAGGGTAAAATTG--AAG-TTCCAAAACTTTATTACACA--Tgcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|2 : tTTTT-----GTT--TTGTTTTG--GGTTTTTTTGCAC---AAGGTGAAAA------------------TT-ATTGCA-CAT--CTAAT-----GT----ACACCACCAA-CAAT-CGATTCCCAAAAGA-TGATTTGGTAA----CTGTGTAAAATGTAA--------------------AA-----AT-----------------AGCAA-CA-TT-----TTTTC----AACTCCCATTTGGGCCCCA-----G----TGT-GAA----AATGAAAATTCTGAAACCCAATTGCTCATCTACAGG-CCCTC---ACTTG-TCATCTT-T-CAAAAGG-----TAATTT-GGCTACTGCTTA-T--AA--TGTA--AAA---TG-TAA-AATCCA------CTGCATTTAT---------AGAAAA--AA--AGTTGCTTTTTCGA-----------CA--C--CCAGGG------T-AAAATTGAAGTTCCAAAACTTT--ATTACACATattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|20 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggCAAGTGTTT-GTCTATAAA-A-ATACTATCCGTCGTACTTG-TGTCATTATCGAGGAAGCAACAGTAGGattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|21 : ACTAGATATAGTCATC-------AGACAGTAATCCTCGCCCGTGAGTGTTTAACTTT---ATATATACTC
gi|22 : AGG-ACACC---ACCAA-TCATCTT---CAAAAGA-----TTATTT-GGCAACTGAGTA-A--A
gi|3 : gtT-ACA-TAT---TTAT----AGG----ACGCCA---AT-AAC-TGCTTACGAAAAGA-TGATTTGGCTAACTACTGCGTAAAATGTA-------------GAAC---CAAAGGCTGT---TTTCGTTGA----AA--AA-CG-TG-----TTTTA----AAACCTCA-TTTGGCCCCATGGATGAAATTGA-AAACATGAATGAAAATTCCGAAAACTTATTGCGCATCTGCAGA-TCACTTGTACCAG-ATATCCC-CTCAAAAGT-----TGATTT-GGCTACTTTGTA-A--AT--TGTA--CGA-G---------A-CCA------T----TTTAT---------TTATAA--AT--C--CA--TTTTTTT-----------TT--CTTCCGGGG------TGAAAAA-----TCCCAAAACCTTGAATTGTACATCTACAGA-ACATCACCAATGATC--TTCCTAATAAAAGATGAA-TT--GGCTACTGC------TTTTAA-AAAATGTATTAG---GAGTTTCATATTTATT-TT---------TTAT--TTTA
gi|4 : ctgatTTTTTTTTTGACTTCATTTGGATCCCAGGATAAAAACTAAAAAAT-CCGAGAACTT-GT-GCATCA------AC----AGG----GCACCACCAATCA-T-T--CTCCAAAAAAAATAGT----CTA----TTGCGAAATATTCATGAGAAGGTCTGGGAAT---CAG-----GT---TTTT-TTAACACAGAGAAATCG-AG-----TTTTTTTTTA---CCCATTTTGTCCTTA-----T----GGT-GAA----AATGAACATTTTGAATTTTTATTCTACATTGATGGG-ACACC---ACTAA-TTTCCCT-C-TAAAAAC-----TTAATT-AGTCACTGgaaaaaccagattttg
gi|5 : tgaaagaggagtttggggaacattttttttactggaaataaatcttttATTCTGAAACCTT-ATTATA-TAT--CT-AT----AGG----ACACCACCAATTAACATGC-----AAAAGA-TGATTTGGCTA----CTGTGTAAAATGTGAGGGGAG----GG---------------GT---TTTG-GTAA----AAAAAATCA-CGTCGTTTTTTT----AAACCCCAGTTTGGGGACA-----G----GAA-GAA----AATGAAAACTCTGAAAACTT----------TACAAG-ACACC---GTCAA-TCATCTTCC-CAAAAAA-----TTATTTCGTCTCTTG-ATATATTAA--TGAG--ATA-CTTCTTTG-AA-CTT------T----TGTTT---------TGAAAAGTAAGCCGTCG--TTTTCGACAGCTATTTTGTT--C--CCAGGG------Tggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|6 : GTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATATAT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACAATA
gi|6 : taattagaattaACCACATT--ACATGTAGCATTACTCAAT--AACATATATTCTTGCTGCACGTGCC-AAGATGCTCTGAGTATT-CAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTG-TAGAATAGTATTTAAAACGTA--TAGGCC--TACTGA-CTACCTTCGCAAAAT-------CATG-TTACCTGttatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttTAGATATTGTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATAT-T-CTTTCCATCGTACTTG-TCTAACTAGCAAAGAAGCCACAATA
gi|7 : tACATGTAGCAT-ACTCAAT--AACATATATTCTTGCTGCACGTGCC-AAGATGCTCTGAGTATT-CAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--TAGGCCTAC-CTGA-CTACCT--------TCTCAAAACATGTTTACCTGTttatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|8 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacatTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAAACAATTTTCCCTTCAAGCTGAAAA--A-AAAATCTCGATAACTT--T-GT-----------------GG----ACACCACCAATCA-----TCTCTCAAAACA-AGATTTGGCTA----CTACGTAAAATGCAAAGGGGT-TCTTGGATC---TAA-----GT---TTTA-CCAA----GAAAAA-CGTCG-----CTTTA----CAACCCCAACTGGCCCCCA----------TGATGAA----ACTGAAAATTCTGAAAACTTAgtggta
gi|9 : acatgATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT--------TATTGCTTATTGGAAGGACGTACACCGACAATCAat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT
Alignments
lowQualScore : 1111111 1 1 111 222 222 1 111 1111 1 11 444444444444444 1 1 1 1 111 22222 2222 44444444444444444444444 1111 22222222222 1111 8888888888888888888888888888888888888888888888 22222222222 11111 33333333333 1111 11111 111111 66666666666666666666666666666666 3333333333 11 1111 11 3333333333333333333 111111 11111 11 11 11 1 111 2222222 2222222 111111 44444444444444444444444444444444 222222 111 55555555555555 66666666666666666666 55555555 222 44444444444444444444 2222 2222 22222 1111111 1 11 1 11
lowQualScore : 4444444 0 4 0 5 4 0 2 5 0 3 333 1 2 8 1 777 1 77 555 44 3 6 6 7777777 1 9 0 777 0 7777 0 00 999999999999999 0 7 5 1 0 2 0 2 333 7 0 55555 6 888 111 0 3 0000 5 1 55555555555555555555555 2222 3 1 22222222222 6 4444 2222222222222222222222222222222222222222222222 3 22222222222 55555 6 6 22222222222 55 0000 2 0 4 22 2 4 777 4 888 11111 1 4 1 5 444444 77777777777777777777777777777777 3333333333 11 2222 11 7777777777777777777 999999 77777 8 11 8 00 0 33 0 000 3 9999999 1 7777777 777777 0 3 66666666666666666666666666666666 000000 111 1 44444444444444 22222222222222222222 44444444 3 333 99999999999999999999 8888 3333 00000 6 5555555 0 0 1 1 33 0 22 33 0 3 7 999
lowQualScore : ....... . . . . . . . . . . ... . . . . ... . .. ... .. . . . ....... . . . ... . .... . .. ............... . . . . . . . . ... . . ..... . ... ... . . .... . . ....................... .... . . ........... . .... .............................................. . ........... ..... . . ........... .. .... . . . .. . . ... . ... ..... . . . . ...... ................................ .......... .. .... .. ................... ...... ..... . .. . .. . .. . ... . ....... . ....... ...... . . ................................ ...... ... . .............. .................... ........ . ... .................... .... .... ..... . ....... . . . . .. . .. .. . . . ...
lowQualScore : 4444444 7 0 0 8 6 2 2 0 2 3 666 0 5 0 4 000 4 33 888 77 0 7 7 5555555 0 8 0 000 2 8888 0 00 000000000000000 0 3 0 0 0 5 7 0 000 3 7 00000 5 000 666 6 2 0000 7 8 22222222222222222222222 1111 0 7 00000000000 7 2222 5555555555555555555555555555555555555555555555 7 55555555555 22222 6 6 66666666666 88 6666 8 8 5 44 2 4 888 4 000 11111 0 4 4 0 555555 00000000000000000000000000000000 4444444444 00 4444 00 9999999999999999999 222222 88888 2 00 8 22 8 88 0 222 2 0000000 2 8888888 222222 2 5 88888888888888888888888888888888 222222 777 0 00000000000000 00000000000000000000 00000000 7 333 33333333333333333333 7777 3333 22222 5 2222222 2 0 0 0 22 0 22 88 7 7 3 333
consensus : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTAA----AAGAAA-CG-CG-----TTTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTT-GGCTACTGCGTA-A--AA--TGTA--AGA-GTTC-TGG-AA-CCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TT--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---CAGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCT--AGTTTG-G----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
Reference ( family-4986 ) : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTAA----AAGAAA-CG-CG-----TTTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTT-GGCTACTGCGTA-A--AA--TGTA--AGA-GTTC-TGG-AA-CCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TT--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---CAGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCT--AGTTTG-G----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
gi|1 : TGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTT-GCTTGTAAAAATATACTCTTTGTCGTACTTG-TGTAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCATATTTA-CAT-ACGCTAT-CAAAAAATATTCTTGCTGCATATGTC---GATGCACGGAGTCTT-TTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGC--C-CTGA-CCCCCT-----AAATC---AGATATG-TT-CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATT-CCAACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTGTCCCTCGAGGTGAAAA--AGAAAATTCTGAAAACTTAAT-GCA-CAT--CTTAT----AGG----ACACCATCAATTAAT-TACCTTTGGAAAGA-TGATTTGGCTA----GTGCACAAAATGTAAGAGAAGTTCTGGGAACTATTAA-----GTAAGTTAT-TTGA----AAGAAA-AA-CG-----TTTTG----AAACCCCAACTTGCACCCA-----A----TGA-GAA----AACGAAAATTCTGAAACCTTATTGCTCATTTATAGG-ACACT---ATCAA-CAACCTT-C-CAAAAGA-----TTATTT-GACCACTGCGTT-A--AC--CGTA--AGA-GTTC-TGGAAA-CCAAGGGGGT----TTTAT---------CGAAAA--AA--CGTCG--TTTCTGA-----------TC--C--TCATGA------TGGAAAAGGAAATTCCGAAAACCA--ATTGCATATCTACAGG-ACATTACCAATAACC--TT-CTAA-AAAAGATG---TTAAGGATAATGAGT-AATTTGTAAGAGAATGTTTTAGAACCAGTTCT-TATTTATTATT---------TTTT--TTTACATGTCTTCTTTTTTAACCTAAAATTTG-GGCGTCATAGTGAAAATGAAAATTCCGAAATCAT-ATTACACACATATATAAAAAGGACACCACCGATCATC---TTCCAAAATATGACTTGGTTAAT-----TACTG-----CGTAAAATC--TTGTAACTA-AGAAAAAAATGTCGTCGTTTTT--AC-CCTTT-TTGACACTAAGGGTAAAAACG-AAAA-TTCTGAAACTTTATTGCACA--CCTACAAGACACCACCGATCATTTTCTAAAGAGATGAACTGGTTACT
gi|10 : caaTGAACTAGATGCTGTTATG-------AGGCAGTAATACCCACACGCAAGTGCTT-G-TCTTGAAT-CATACTCTACATCGTACT---------------AGAAGCCACA
gi|10 : -ATTAC-CACCTAGCAT-AATCTATTCCATATATATTCTTGTTGCACCTGTC-A--------------TT-CTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAcaagtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|11 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacaagtttAAAGAAA---CTTCGTTTTTCAAC-CCCTCATTGGCCCCCAGGGTAAGATTGTAAGATTTCTTAAACCTTATTATACATGTCTATGGAACACCATCAATTACCTTCCAAAA----GATTTGGC
gi|12 : aaagttgtggaaaccttatttttctatACTAGATGCTGTTACA-------AGACAGCAATACCTGCCTGTAAGTGGTT-GCCTTT--AGATGTACTCTACTTTATACTTT-TGTAAATAGCAAAGAAGCCACAATAG
gi|13 : ATATTTGTACCGCA--TGTCTA-GATGCATTGCGCATTTCTGTTGGG---------------TAATCTCAATATTCATTTCAAAATAGATGAGACA-TATTTTAAAAAT---TGAGTT--C-CTGAGC--CCC-----AAATC-----ATATG-TTtcaacttataccaggctattctata
gi|14 : aATTTTG-CCCCA-----G-----GA-TAA----AATAAAAATTCTGA--------------TTTATAGG-ACACC------AA-TCATCTT-C-CAACACA-----TAATTT-GACTACTACGTA-ATTAAATTGTACCAGACGTTCAAGG-AA-CCA------T----c
gi|15 : TGGATGCTGTCATA-------AGACAGTGATACCCACACGCAAGTGTCT--CCTTCCAA-ATGCCCTCTCCGTCGTTCTTG-TGTATTTAGCAAAGAaagtt
gi|16 : aAGATGTTGTCATA-------AGACAGCAATACTTACAAGAAAGTGTTT-GTCTTTCATTATATATTCTT--TTGTTCCTG-GGTAACTAAATAACGAGCCATAATAGGtattttataatttac
gi|17 : gCAT-ACTCTATACTGTATATATTCTTGCTGCATATGTCGA-GATGTAGTGCATATT-CTGTTAGGCAAGTA-CTTTGTGGTAATC
gi|18 : AATATATCCTT-GTTGCACATGACACAac
gi|18 : agatCTTGTTGCACATG-ACA----CACT---ACCAAATCATCTC-T-GAAAAGAAAATATAATTT-TGTTACTGCACA-A--AA--TGTctaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|19 : agataatatatcACTGAATGTTGTCATA-------AGACAGCAATACCCGCACACAAATGTTT-GTTGTT--ATAT
gi|2 : -----------TC--C--TCAAGG------TGAAAAAGACAATTTCATAATCTT--ATTGCACAGCTA-AGGCACACTACCAATCATC--TC-CTAA-AG--GATT-A-TTT-GGTTACTGCAT-AAATTGTA------TATTTTA--------TTT-TATTTTTTATCCCCAAAAAATATTGGTTT---TGTTTTGTTTTGGGTTTT----TTTGCA----CAAGGTGAAAAT----------------T-ATTGCACATCTA-AT-----GTACACCACCAACAATCGATTCCCAAAAGATGATTTGGT--A-------ACTG-----TGTAAAAT-----GTAA----AAATAGCAA---CAT--TTTTTCAACTCCCAT-TTGGGCCCCAGTGTGAAAATG-AAAA-TTCTGAAACCCAATTGCTCA--TCTACAGGCCCTCACTTGTCATCTTTC-AAAAGGTAATTTGGCTACTggatgcctctacct
gi|2 : CCTCA-----A----GGT-GAA----AAAGACAATTTCATAATCTTATTGCACAGCTA-AGGCACACT---ACCAA-TCATCTC-C-TAAAGGA-----TTATTT-GGTTACTGCATA-A--AT--TGTAT-A----TTT-T--------A------T----TTTATTTTTTATCCCCAAAA--AA--TATTG--GTTTTGT-----------TTTGT--TTTGGGTTTTTTTGCACAAGG-----TGAAAA--TT--ATTGCACATCTAATGT-ACACCACCAACAATCGATT-CC-C-AAAAGATG-ATTT--GGTAACTGTGTAAA-ATGTAA-AAA------TAG---CAA------------CATT---------TTTT------CAACTCCCA-TTTGGGCCCC--AGTGTG-------AAAATGAAA------ATTCTGAAACC-CAATTGCTCATCTAC------AGGCCCTCACTTGTCATC---TTTCAAAAGGTAATTTGGCTACTGCTTATAATGTAAAATGTAAAATCCACTGCATTTATAGAAAAAAA----GTTGCTT----------TT-TCGACACCCAGGGTAAAATTG--AAG-TTCCAAAACTTTATTACACA--Tgcttataatgtaaaatgtaaaatccactgcatttatagaaaaaaagttgctttttcgacacccagggtaaaattgaagttccaaaactttattacacatattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|2 : tTTTT-----GTT--TTGTTTTG--GGTTTTTTTGCAC---AAGGTGAAAA------------------TT-ATTGCA-CAT--CTAAT-----GT----ACACCACCAA-CAAT-CGATTCCCAAAAGA-TGATTTGGTAA----CTGTGTAAAATGTAA--------------------AA-----AT-----------------AGCAA-CA-TT-----TTTTC----AACTCCCATTTGGGCCCCA-----G----TGT-GAA----AATGAAAATTCTGAAACCCAATTGCTCATCTACAGG-CCCTC---ACTTG-TCATCTT-T-CAAAAGG-----TAATTT-GGCTACTGCTTA-T--AA--TGTA--AAA---TG-TAA-AATCCA------CTGCATTTAT---------AGAAAA--AA--AGTTGCTTTTTCGA-----------CA--C--CCAGGG------T-AAAATTGAAGTTCCAAAACTTT--ATTACACATattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|20 : tcctcaaggtgaaaaagacaatttcataatcttattgcacagctaaggcacactaccaatcatctcctaaaggattatttggttactgcataaattgtatattttattttattttttatccccaaaaaatattggCAAGTGTTT-GTCTATAAA-A-ATACTATCCGTCGTACTTG-TGTCATTATCGAGGAAGCAACAGTAGGattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|21 : ACTAGATATAGTCATC-------AGACAGTAATCCTCGCCCGTGAGTGTTTAACTTT---ATATATACTC
gi|22 : AGG-ACACC---ACCAA-TCATCTT---CAAAAGA-----TTATTT-GGCAACTGAGTA-A--A
gi|3 : gtT-ACA-TAT---TTAT----AGG----ACGCCA---AT-AAC-TGCTTACGAAAAGA-TGATTTGGCTAACTACTGCGTAAAATGTA-------------GAAC---CAAAGGCTGT---TTTCGTTGA----AA--AA-CG-TG-----TTTTA----AAACCTCA-TTTGGCCCCATGGATGAAATTGA-AAACATGAATGAAAATTCCGAAAACTTATTGCGCATCTGCAGA-TCACTTGTACCAG-ATATCCC-CTCAAAAGT-----TGATTT-GGCTACTTTGTA-A--AT--TGTA--CGA-G---------A-CCA------T----TTTAT---------TTATAA--AT--C--CA--TTTTTTT-----------TT--CTTCCGGGG------TGAAAAA-----TCCCAAAACCTTGAATTGTACATCTACAGA-ACATCACCAATGATC--TTCCTAATAAAAGATGAA-TT--GGCTACTGC------TTTTAA-AAAATGTATTAG---GAGTTTCATATTTATT-TT---------TTAT--TTTA
gi|4 : ctgatTTTTTTTTTGACTTCATTTGGATCCCAGGATAAAAACTAAAAAAT-CCGAGAACTT-GT-GCATCA------AC----AGG----GCACCACCAATCA-T-T--CTCCAAAAAAAATAGT----CTA----TTGCGAAATATTCATGAGAAGGTCTGGGAAT---CAG-----GT---TTTT-TTAACACAGAGAAATCG-AG-----TTTTTTTTTA---CCCATTTTGTCCTTA-----T----GGT-GAA----AATGAACATTTTGAATTTTTATTCTACATTGATGGG-ACACC---ACTAA-TTTCCCT-C-TAAAAAC-----TTAATT-AGTCACTGgaaaaaccagattttg
gi|5 : tgaaagaggagtttggggaacattttttttactggaaataaatcttttATTCTGAAACCTT-ATTATA-TAT--CT-AT----AGG----ACACCACCAATTAACATGC-----AAAAGA-TGATTTGGCTA----CTGTGTAAAATGTGAGGGGAG----GG---------------GT---TTTG-GTAA----AAAAAATCA-CGTCGTTTTTTT----AAACCCCAGTTTGGGGACA-----G----GAA-GAA----AATGAAAACTCTGAAAACTT----------TACAAG-ACACC---GTCAA-TCATCTTCC-CAAAAAA-----TTATTTCGTCTCTTG-ATATATTAA--TGAG--ATA-CTTCTTTG-AA-CTT------T----TGTTT---------TGAAAAGTAAGCCGTCG--TTTTCGACAGCTATTTTGTT--C--CCAGGG------Tggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|6 : GTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATATAT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACAATA
gi|6 : taattagaattaACCACATT--ACATGTAGCATTACTCAAT--AACATATATTCTTGCTGCACGTGCC-AAGATGCTCTGAGTATT-CAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTG-TAGAATAGTATTTAAAACGTA--TAGGCC--TACTGA-CTACCTTCGCAAAAT-------CATG-TTACCTGttatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttTAGATATTGTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATAT-T-CTTTCCATCGTACTTG-TCTAACTAGCAAAGAAGCCACAATA
gi|7 : tACATGTAGCAT-ACTCAAT--AACATATATTCTTGCTGCACGTGCC-AAGATGCTCTGAGTATT-CAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--TAGGCCTAC-CTGA-CTACCT--------TCTCAAAACATGTTTACCTGTttatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|8 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacatTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAAACAATTTTCCCTTCAAGCTGAAAA--A-AAAATCTCGATAACTT--T-GT-----------------GG----ACACCACCAATCA-----TCTCTCAAAACA-AGATTTGGCTA----CTACGTAAAATGCAAAGGGGT-TCTTGGATC---TAA-----GT---TTTA-CCAA----GAAAAA-CGTCG-----CTTTA----CAACCCCAACTGGCCCCCA----------TGATGAA----ACTGAAAATTCTGAAAACTTAgtggta
gi|9 : acatgATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT--------TATTGCTTATTGGAAGGACGTACACCGACAATCAat
blockSeqs : . A G T A A T C AC C G T T TCC T CC TA AT C T C ACCCCAA C A G A TAC G TA TCGCAAAAT T A C T T C C GA A AATTG C TTG GTT C CTAA T G TATTGCTTATTGGAA ACGT C C ATCGATTCCC A ACTA TGAGAAGGTCTGGGAATCAGGTTTTTTTAACACA G TCACGTCGTT TTTTT T G TGGATGAAATT AT CATG T A TT T C TGT A CT AAATA A C C T TTAAAT CCAGACGTTCAAGGAACCAT TTTTTATCCC GT GCCG CT ACAGCTATTTTGTTC TTTTTT GACAA T GA A GC GA C AAT A ATTT T CATAAA AAAAA T TTTTATTTTTTATCCCCAAAAAA GGTTT TGT T TTTGCA ATTCTGAAACCCA AT A GAT TACTGCTTATAATGTAAAAT CCAC TTAT CT C TTCAACT A C T TA T TT TG A A AGG
blockSeqs : . . C G A T . . A G G . T ACT T TA GA AG C . C CGCTGG T T . A TA . TA TCTCAAA . A . C . T . . T CTC CTT T AG C A ATTGCACATCTAAT . C C ACTGCTTACG . . AAGGGGTTCTTGGATCTAAGTTTTACCAA G TCGAG C T G AG A . C A CT C . . . CC . A . C . TTAA AAATGTAAAATCCACTGCA A . TA . TTTTGT . TGAAG C . C T . . AA A ATTT T TGTAAA AAAA A GGAGTTTCATATTTATTTT TTTA CA C AGTGTG ATT CA T . AACTGT . . CA T TTCAAC . C A A . TG . T . .
blockSeqs : . . C T C G . G G . A A C CG AA TC A . A CTTTGT A . . . C . . AAATC . . . . . CCT AAC C A T T ATTATATATCTATA . C T TTCTCCA . . GAACCAAAGGCTGTTTTCGTTGA A CGTCG A T T GT T . A T CT C . . . C . T . C . AA ATACTTCTTTGAACTTT T . AG . TTTCTT . GG C . . A . . C . AATT C C . . GCAACATT . G . . . A T . . CA .
blockSeqs : . . A T A G . . A A C CG AA TC A . A CCCCAA A G TCC . . . A GTGCATCAACA . C C ACATGC . . AGGGGAGGGGTTTTGGTAA A CATT T G G TG T . T G CT C . . . T . A . C . AT CGAGACCAT T . C . ACAC . . . .
blockSeqs : . . C T A A . . A . . . . . . . TGT . A C TCTCTC . . AAAAT . CGTG A A C GG A . A A TG T . . . C . T . A . AA TATTTTAT .
blockSeqs : . . C T A A . . . . . . G T . A . G C . . . T . G . T . AT
blockSeqs : . . . T . . . T A . . . T . . . . C . T . . .
blockSeqs : . . . . . . . . . . T .
blockSeqs : . . .
blockSeqCons : ******* A** AA* A*** ATTGCGCATCNGNA********* ACCTTCCN*** AANGAAGGGCCGTTTTNNTAA************************* CANACTTAACCAT******************* TTTCGT*************
originalCons : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT-CAACATATATTCTTGCTGCACGTGTC-A-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTT-AT-GCA-CAT--CTTAT----AGG----ACACCACCAATCAAT-TGCCTCCGAAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAGGGGAG-TCTGGGAAC---CAA-----GT---TTTN-TTAA----AAGAAA-CG-CG-----TTTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTT-GGCTACTGCGTA-A--AA--TGTA--AGA-GTTC-TGG-AA-CCA------T----TTTAT---------CGAAAA--AA--CGTCG--TTTTCGA-----------TT--C--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---CAGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCT--AGTTTG-G----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
finalCons : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTATA--ACATATATTCTTGCTGCACGTGTCAA-GATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAAA---AAAATTCCGAAAACTTATTGCGCATCNGNA---------GG----ACACCACCAATCAACCTTCCN---AAAAGA-TGATTTGGCTA----CTGCGTAAAATGTAAANGAAGGGCCGTTTTNNTAA-------------------------AAGAAA-CG-CG-----TTTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACACC---ACCAA-TCATCTT-C-CAAAAGA-----TNATTT-GGCTACTGCGTA-A--AA--TGTACANACTTAACCAT-------------------TTTAT---------CGAAAA--AA--CGTCG--TTTTCGTTTCGT-------------CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGG-ACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---CAGTTTT-TATTTATTATT---------TTTT--TTTACATGTCTCGTTTTGGGNCCT--AGTTTG-G----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATC---TTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAAC-CCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT
Alignments
lowQualScore : 1111111 1 1 111 22222 1 111 1111 1 11 444444444444444 1 1 1 1 111 33333 2222 222222222 1111 3333333333333 1111 888888888888888888888888888888888888888 111 1111 1 22222 11111 44444444444 1111 11111 111111 9999999999999999999999999999 1111 11111111 333333333333333333333333333 1111111111 222222 11 1 111 3333333 3333333 1 11111 33333333333 22 22 666666 666666 333 666666 666666666666666 22 2 3333 2222 1 22 1 11 3333
lowQualScore : 4444444 0 4 0 5 4 0 2 5 0 3 333 1 2 8 1 55555 1 77 99 44 3 6 6 7777777 1 9 0 777 0 7777 0 00 999999999999999 0 7 5 1 0 2 0 2 333 7 0 33333 0 1 0 222 33 0 4444 6 66 000000000 4444 5 3 7777777777777 0 7777 8 1 777777777777777777777777777777777777777 000 7777 6 6 8 00000 88888 0 7 7 00000000000 5 2222 3 2 555 55 4 5 888 5 777 22222 1 5 3 5 999999 7777777777777777777777777777 4444 66666666 2 555555555555555555555555555 4 8888888888 777777 3 0 88 3 999 4444444 4 4444444 3 11111 55555555555 7 7 66 66 55 1 77 3 000000 4 111111 888 4 2 111111 3 3 2 2 3 555555555555555 77 4 0 0 0000 8888 3 3 0 1 1 00 3 44 0 0 88 1111 4
lowQualScore : ....... . . . . . . . . . . ... . . . . ..... . .. .. .. . . . ....... . . . ... . .... . .. ............... . . . . . . . . ... . . ..... . . . ... .. . .... . .. ......... .... . . ............. . .... . . ....................................... ... .... . . . ..... ..... . . . ........... . .... . . ... .. . . ... . ... ..... . . . . ...... ............................ .... ........ . ........................... . .......... ...... . . .. . ... ....... . ....... . ..... ........... . . .. .. .. . .. . ...... . ...... ... . . ...... . . . . . ............... .. . . . .... .... . . . . . .. . .. . . .. .... .
lowQualScore : 4444444 7 0 0 8 6 2 2 0 2 3 666 0 5 0 4 88888 4 33 22 77 0 7 7 5555555 0 8 0 000 2 8888 0 00 000000000000000 0 3 0 0 0 5 7 0 000 3 7 33333 2 0 2 555 22 2 8888 7 33 333333333 2222 2 7 1111111111111 8 0000 0 0 444444444444444444444444444444444444444 000 0000 4 0 0 00000 00000 8 5 5 00000000000 7 1111 0 0 111 44 0 0 888 0 111 55555 0 0 0 7 555555 6666666666666666666666666666 2222 55555555 0 555555555555555555555555555 0 3333333333 333333 7 7 33 3 777 3333333 7 0000000 3 33333 77777777777 3 3 55 00 00 0 55 0 000000 0 000000 555 0 5 000000 0 0 5 5 0 555555555555555 55 0 0 7 0000 3333 7 3 7 0 0 77 3 33 7 7 33 5555 0
consensus : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT--A--ACATATATTCTTGCTGCACGTGTCAAGATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTCTCACTCCATTTGCNCCTCAAGGTGAAAA--AGAAAATTCCGAAAAC-TTATTGCGTATC-TATAGG----ACACCACCAATCA---AC--CTTCCGAAAAGATGATTTGGCTA----CTGCGTAAAATGTA-AGGGAA-----G----GG---CT---G---------TT-------TT-NNTAA----AAGAAATCG-CGT-----TTTN----AAACCCCANTTTGNCCCCA-----G----NGA-GAA----AATGAAAATTCCGAAANCTTATTGCACATTTACAGG-ACAC---CACCAA-TCATCTTC-C-AAAAGA-----TTATTTGG-CTACTGCGTA-A--AN--TGTA-CA---NAC-TTCT-GGAACCA------TTTTAT--CGAAAA--AA--CGTCGTTTTTG-------TTTCGT--CCGGGG------TGNA-AAGGAAATCCCGAAA-CTT--ATTGCACATCTACAGNACATCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGNTACTGCGT-AA-TTGTAA-AAAATGT-TTAG---CAGTTCC-TATTTATTATTTTTTTTTACANNTCCCNTTTTNNGNCCCAAAGTNTGGGCGTCANAGTGAAAATGAAAATTCCGAAACCACAATTGCNCACNTACATAAAAAGGNCNCCACCGGTCATCTTCCAAAANGTGACTTGGCTANTGCTTATANTGTAAAACGTAAAATCCACTGCANCTATAGAAAAAAA---CGTCGTTTTT--ACCCCTT-TCGACACCCAGGGTAAAATCG-AAAA-TTCCGAAACTTTATTACACA--TCTACGGGACACCACCGATCACCTTCCAAAGAGATGANCTGGCTACT
Reference ( family-4986 ) : NNNTGAACTAGATGCTGTCATA-------AGACAGTAATACCCGCACGCAAGTGTTT-GCTTTTCAATATATACTCTCCGTCGTACTTG-TGTAACTAGCAAAGAAGCCACAATAGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCACATNTAGCAT-ACTCTAT--A--ACATATATTCTTGCTGCACGTGTCAAGATGCACTGAGTATT-CTGTTGGGCAAGTG-CCCCGAGGTAATCCCAAACNTTATTTCATAATTGTTGGAATA-TATTTAAAACGTA--TGGGCC--C-CTGA-CTACCT-----AAATC---AGACATG-TTACCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATTCCCAACCCTNAAAGCAAATATATTCTT-GTTGCACATGACACAACGCAATGATGAGCATCGAGTTTTT-----GTTCGTTGTTTTNTCANTCCATTTGCACCTCAAGGTGAAAA--A-AAAATTCCGAAAAC-TTATTGCGCATC-NGNAGG----ACACCACCAATCA---AC--CTTCCNAAAAGATGATTTGGCTA----CTGCGTAAAATGTA-AANGAA-----G----GG---CC---G---------TT-------TT-NNTAA----AAGAAA-CG-CGT-----TTTN----AAACCCCANTTTGNCCCCA-----G----TGA-GAA----AATGAAAATTCTGAAANCTTATTGCNCATCTACAGG-ACAC---CACCAA-TCATCTTC-C-AAAAGA-----TNATTTGG-CTACTGCGTA-A--AA--TGTA-CA---NAC-TT-----AACCA------TTTTAT--CGAAAA--AA--CGTCGTTTTCG-------TTTCGT--CCAGGG------TGAAAAAGGAAATTCCAAAACCTT--ATTGCACATCTACAGGACACCACCAATAATC--TT-CTAA-AAAAGATG-A-TT--GGTTACTGCGT-AA-TTGTAA-AAAATGTTTTAG---CAGTTTT-TATTTATTATTTTTTTTTACATGTCTCGTTTTGGGNCCT--AGTTTGG----CAAAGTGAAAAT----ATTCCGAAACC-T-ATTGCACATCTACAT----AGGACACCACCGATCATCTTCCAAAAGATGATTTGGTTAAT-----TACTG-----CGTAAAATC--CTGTAACTA-AGAAAGAAA---CGTCGTTTTTCAACCCCTT-TTGGCNCCCAGGGTAAAANTG-AAAA-TTCCGAAACCTTATTGCACA--TCTACGGGACACCACCGATCATCTTCCAAAAAGGTGATTTGGCTACT
gi|1 : TGAACCAGACGCTGTCACACACTGCAAGACAGTACTACCCACACGCAGGTGCTT-GCTTGTAAAAATATACTCTTTGTCGTACTTG-TGTAACTAGCAAAGAAGCCACGGGGGGTCGAGAAAACGCCTTATCTGGCCCCATTTGGCCCCTAGGATGAAAAATAAAATTCTGAAGACCA-ATTGCATATTTA-CAT-ACGCTATC-A--AAAAATATTCTTGCTGCATATGTC--GATGCACGGAGTCTT-TTGTTTGGCAAGTG-TCTTGAGGTCATCTTAAATTTTATTTCATAATTTTTGAAATA-TATTTAAAACACAACTGAGGC--C-CTGA-CCCCCT-----AAATC---AGATATG-TT-CCTGTAGTATTTTAATTGTTAAGTATCCCTGGACCATTCCAACCACAACCATTTTTGGATTGTTCAAACACCTTTTTAAAAAGTTGCTGATATT-CCAACCCTGAAAGCAAATATATTGTT-GTTGCACATGATACAATGTAATGATGAGTATCAAGTTTCT-----GTTCGTTGTCTTATCACTACATTTGTCCCTCGAGGTGAAAA--AGAAAATTCTGAAAAC-TTAATGCACATCTTATAGG----ACACCATCAATTAATTAC--CTT-TGGAAAGATGATTTGGCTA----GTGCACAAAATGTA-AGAGAA-----GTTCTGGGAACT---A---------TTAAGTAAGTTATTTGA----AAGAAA-AA-CGT-----TTTG----AAACCCCAACTTGCACCCA-----A----TGA-GAA----AACGAAAATTCTGAAACCTTATTGCTCATTTATAGG-ACAC---TATCAA-CAACCTTC-C-AAAAGA-----TTATTTGA-CCACTGCGTT-A--AC--CGTA--A---GAG-TTCTGGAAACCAAGGGGGTTTTAT--CGAAAA--AA--CGTCGTTTCTG-------ATCC----TCATGA------TGGAAAAGGAAATTCCGAAAACCA--ATTGCATATCTACAGGACATTACCAATAACC--TT-CTAA-AAAAGATG---TTAAGGATAATGAGT-AATTTGTAAGAGAATGTTTTAGAACCAGTTCT-TATTTATTATTTTTTTTTACATGTCTTCTTTTTTAACCTAAAATTTGGGCGTCATAGTGAAAATGAAAATTCCGAAATCAT-ATTACACACATATATAAAAAGGACACCACCGATCATCTTCCAAAATATGACTTGGTTAAT-----TACTG-----CGTAAAATC--TTGTAACTA-AGAAAAAAATGTCGTCGTTTTT--ACCCTTT-TTGACACTAAGGGTAAAAACG-AAAA-TTCTGAAACTTTATTGCACA--CCTACAAGACACCACCGATCATTTTCTAAAGAGATGAACTGGTTACT
gi|10 : caaTGAACTAGATGCTGTTATG-------AGGCAGTAATACCCACACGCAAGTGCTT-G-TCTTGAAT-CATACTCTACATCGTACT---------------AGAAGCCACA
gi|10 : -ATTAC-CACCTAGCAT-AATCTATTCC--ATATATATTCTTGTTGCACCTGTCA--------------TT-CTGTTGGGCAAGTA-CGCTGGGGTTATTCAAAACCTTATTTCATAcaagtttattaccacctagcataatctattccatatatattcttgttgcacctgtcattctgttgggcaagtacgctggggttattcaaaaccttatttcata
gi|11 : tgaactagatgctgttatgaggcagtaatacccacacgcaagtgcttgtcttgaatcatactctacatcgtactagaagccacacaagtttAAAGAAA---CTTCGTTTTTCAACCCCTCATTGGCCCCCAGGGTAAGATTGTAAGATTTCTTAAACCTTATTATACATGTCTATGGAACACCATCAATTACCTTCCAAAA----GATTTGGC
gi|12 : aaagttgtggaaaccttatttttctatACTAGATGCTGTTACA-------AGACAGCAATACCTGCCTGTAAGTGGTT-GCCTTT--AGATGTACTCTACTTTATACTTT-TGTAAATAGCAAAGAAGCCACAATAG
gi|13 : ATATTTGTACCGCA--TGTCTAGATGCATTGCGCATTTCTGTTGGG---------------TAATCTCAATATTCATTTCAAAATAGATGAGACA-TATTTTAAAAAT---TGAGTT--C-CTGAGC--CCC-----AAATC-----ATATG-TTtcaacttataccaggctattctata
gi|14 : aATTTTG-CCCCA-----G-----GA-TAA----AATAAAAATTCTGA--------------TTTATAGG-ACAC---C---AA-TCATCTTC-C-AACACA-----TAATTTGA-CTACTACGTA-ATTAAATTGTACCA---GACGTTCAAGGAACCA------Tc
gi|15 : TGGATGCTGTCATA-------AGACAGTGATACCCACACGCAAGTGTCT--CCTTCCAA-ATGCCCTCTCCGTCGTTCTTG-TGTATTTAGCAAAGAaagtt
gi|16 : aAGATGTTGTCATA-------AGACAGCAATACTTACAAGAAAGTGTTT-GTCTTTCATTATATATTCTT--TTGTTCCTG-GGTAACTAAATAACGAGCCATAATAGGtattttataatttac
gi|17 : gCAT-ACTCTAT--ACTGTATATATTCTTGCTGCATATGTCGAGATGTAGTGCATATT-CTGTTAGGCAAGTA-CTTTGTGGTAATC
gi|18 : AATATATCCTT-GTTGCACATGACACAac
gi|18 : agatCTTGTTGCACATG-ACA----CAC---TACCAAATCATCTCT-G-AAAAGAAAATATAATTTTG-TTACTGCACA-A--AA--TGTctaccaaatcatctctgaaaagaaaatataattttgttactgcacaaaatgt
gi|19 : agataatatatcACTGAATGTTGTCATA-------AGACAGCAATACCCGCACACAAATGTTT-GTTGTT--ATAT
gi|2 : CCTCA-----A----GGT-GAA----AAAGACAATTTCATAATCTTATTGCACAGCTA-AGGCACAC---TACCAA-TCATCTCC-T-AAAGGA-----TTATTTGG-TTACTGCATA-A--AT--TGTA-TATTTTAT-TT-----TATT-------TTTTATCCCCAAAA--AA--TATTGGTTTTG-------TTTTGT--TTTGGGTTTTTTTGCACAAGG-----TGAAAA--TT--ATTGCACATCTAATGTACACCACCAACAATCGATT-CC-C-AAAAGATG-ATTT--GGTAACTGTGTAAA-ATGTAA-AAA------TAG---CAA------------CATTTTTT----CAACTCCCA-TTTGGGCCCC--AGTGTG------AAAATGAAA------ATTCTGAAACC-CAATTGCTCATCTAC------AGGCCCTCACTTGTCATCTTTCAAAAGGTAATTTGGCTACTGCTTATAATGTAAAATGTAAAATCCACTGCATTTATAGAAAAAAA----GTTGCTT---------TT-TCGACACCCAGGGTAAAATTG--AAG-TTCCAAAACTTTATTACACA--Tggatgcctctacct
gi|20 : tCAAGTGTTT-GTCTATAAA-A-ATACTATCCGTCGTACTTG-TGTCATTATCGAGGAAGCAACAGTAGGattcctaacatttttgtttacagctttaaaaaaaaagaggagtttgagggaaaaacaaagtgaaacagacagatggccgggccagggtcacagtaatataccagtactcaaatctttctttagaaagtgcattttacatatagtaccaatga
gi|21 : ACTAGATATAGTCATC-------AGACAGTAATCCTCGCCCGTGAGTGTTTAACTTT---ATATATACTC
gi|22 : AGG-ACAC---CACCAA-TCATCTT--C-AAAAGA-----TTATTTGG-CAACTGAGTA-A--A
gi|3 : gtC-TGATTACATATT-TATAGG----ACGCCA---AT-A---ACTGCTTACGAAAAGATGATTTGGCTAACTACTGCGTAAAATGTAGAACCAA-----A----GG---CT---G---------TT-------TT-CGTTG----AA-AAA-CG-TGT-----TTTA----AAACCTCA-TTTGGCCCCATGGATGAAATTGA-AAACATGAATGAAAATTCCGAAAACTTATTGCGCATCTGCAGA-TCACTTGTACCAG-ATATCCCCTC-AAAAGT-----TGATTTGG-CTACTTTGTA-A--AT--TGTA-CG---A----------GACCA------TTTTAT--TTATAA--AT--C--CATTTTTT-------TTTCTT--CCGGGG------TGAA-----AAATCCCAAAACCTTGAATTGTACATCTACAGAACATCACCAATGATC--TTCCTAATAAAAGATGAA-TT--GGCTACTGC------TTTTAA-AAAATGTATTAG---GAGTTTCATATTTATT-TTTTATTTTA
gi|4 : TTTTTTTTTGACTTCATTTGGATCCCAGGATAAAAACTA-AAAAATCCGAGAAC-TT---GTGCATC-AACAGG----GCACCACCAATCA---TT--CTCCAAAAAAAATAGT----CTA----TTGCGAAATATTCA-TGAGAA-----G----GT---CT---GGGAATCAGGTT-------TT-TTTAACACAGAGAAATCG-AGT-----TTTTTTTTA---CCCATTTTGTCCTTA-----T----GGT-GAA----AATGAACATTTTGAATTTTTATTCTACATTGATGGG-ACAC---CACTAA-TTTCCCTC-T-AAAAAC-----TTAATTAG-TCACTGgaaaaaccagattttg
gi|5 : tgaaagaggagtttggggaacattttttttactggaaataaatcttttATTCTGAAACC-TTATTATATATC-TATAGG----ACACCACCAATTA---AC--ATGC--AAAAGATGATTTGGCTA----CTGTGTAAAATGTG-AGGGGA-----G----GG--------G---------TT-------TT-GGTAA----AAAAAATCA-CGTCGTTTTTTT----AAACCCCAGTTTGGGGACA-----G----GAA-GAA----AATGAAAACTCTGAAAACTT----------TACAAG-ACAC---CGTCAA-TCATCTTC-CCAAAAAA-----TTATTTCGTCTCTTG-ATATATTAA--TG-A-GA---TAC-TTCTTTGAACTT------TTGTTT--TGAAAAGTAAGCCGTCGTTTTCGACAGCTATTTTGTTCCCAGGG------Tggggttttttttaaacgaggattttgaggaaaaagaaagtgtgacaaaaggacggacccggctaacgggaatataccagaattttcttt
gi|6 : GTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATATAT-CTTTCCATCGTACTTGTTCTAACTAGCAAAGAAGCCACAATA
gi|6 : taattagaattaACCACATT--ACATGTAGCATTACTCAAT--A--ACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATT-CAGATGGAAAAGTGACCCCAAGGTAATCCCAAACATTATTTCATAATTG-TAGAATAGTATTTAAAACGTA--TAGGCC--TACTGA-CTACCTTCGCAAAAT-------CATG-TTACCTGttatcatttaccacattacatgtagcattactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgaccccaaggtaatcccaaacattatttcataattgtagaatagtatttaaaacgtataggcctactgactaccttcgcaaaatcatgttacctg
gi|7 : taattagaattagtcagaagaccgtaatactcatacacaagtgtttgcttttcaatatatctttccatcgtacttgttctaactagcaaagaagccacaatattatcatttTAGATATTGTCAGA-------AGACCGTAATACTCATACACAAGTGTTT-GCTTTTCAATAT-T-CTTTCCATCGTACTTG-TCTAACTAGCAAAGAAGCCACAATA
gi|7 : tACATGTAGCAT-ACTCAAT--A--ACATATATTCTTGCTGCACGTGCCAAGATGCTCTGAGTATT-CAGATGGAAAAGTG-CCCCAAGGTAATCCCAAACATTATTTCATAATTGTTAGAATA-TATTTAAAACGTA--TAGGCCTAC-CTGA-CTACCT--------TCTCAAAACATGTTTACCTGTttatcatttaccacatacatgtagcatactcaataacatatattcttgctgcacgtgccaagatgctctgagtattcagatggaaaagtgccccaaggtaatcccaaacattatttcataattgttagaatatatttaaaacgtataggcctacctgactaccttctcaaaacatgtttacctgtgtggta
gi|8 : ttagatattgtcagaagaccgtaatactcatacacaagtgtttgcttttcaatattctttccatcgtacttgtctaactagcaaagaagccacaatattatcatttaccacatTATATTCTTTGTTA-ACATGACGCAATG-AAT--TGATCACAAGGTTTTTAATTGGTTCGTCGTTTTCTCAAACAATTTTCCCTTCAAGCTGAAAA--A-AAAATCTCGATAAC-T--TTGT----------GG----ACACCACCAATCA---TC----TCTCAAAACAAGATTTGGCTA----CTACGTAAAATGCA-AAGGGGTTCTTG----GA---TCTAAG---------TT-------TT-ACCAA----GAAAAA-CGTCGC-----TTTA----CAACCCCAACTGGCCCCCA----------TGATGAA----ACTGAAAATTCTGAAAACTTAgtggta
gi|9 : acatgATATTCCCAACCTTTAAAGTAAATATCTTCTT-GCTGCACATGACACAACACAATGA--AGC-TCGAGTTTTT-----GTTTGTTATTTTCCTATCCCATTTGCACCTCAAGGTGAAAA--AGAAAATTCCGAAAACTTTATTGCTTATT-GGAAGGACGTACACCGACAATCA---at
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TAACTCTCAGAAAATGGTCCAGAATACTCGCATAT