lowQualScore : 1111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 1 55555555555 3333 3333333333333333333333333333333333 33333 111 33333333333333 444444444 1 66666666666666666666666666666666666666666666666666666666666666666666666 2222 1 1111 222 5555555555555555555555555555555555555555555555555555 11 33333333 33333 1 11 66666666666666 2 1 2 555555 444 1 22 1 1 22 22 1 222 22 222 55 1 1 2222 55 222 222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 2 111 11 1 222 3333333333333333333333333333333333333333333 222 222 33 1 4 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 33333 1 1 1 88888888 1
lowQualScore : 33 5 11111111111 2 9999 6666666666666666666666666666666666 1 8 11111 3 666 55555555555555 55 2 000000000 5 22222222222222222222222222222222222222222222222222222222222222222222222 4 4 4 2 2 2 6 4 3 8888 5 4 9999 66 111 7777777777777777777777777777777777777777777777777777 88 99999999 33333 7 3 00 55555555555555 0 2 0 0 2 999999 6 6 777 7 6 6 11 5 6 5 11 33 5 6 6 6 333 6 11 6 6 6 6 555 6 55 6 5 7 6 9999 6 55 777 6 333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 2 4 4 2 5 0 111 88 5 2 111 6666666666666666666666666666666666666666666 999 555 00 5 2 0 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999 0 6 0 22222 7 6 5 6 5 99999999 4 3 6
lowQualScore : .. . ........... . .... .................................. . . ..... . ... .............. .. . ......... . ....................................................................... . . . . . . . . . .... . . .... .. ... .................................................... .. ........ ..... . . .. .............. . . . . . ...... . . ... . . . .. . . . .. .. . . . . ... . .. . . . . ... . .. . . . . .... . .. ... . ... ............................................................................................... . . . . . . . ... .. . . ... ........................................... ... ... .. . . . . ............................................................................... . . . ..... . . . . . ........ . . .
lowQualScore : 00 0 55555555555 5 0000 0000000000000000000000000000000000 0 3 00000 7 333 77777777777777 88 5 000000000 0 33333333333333333333333333333333333333333333333333333333333333333333333 0 0 0 5 5 5 0 0 0 5555 0 0 5555 55 555 0000000000000000000000000000000000000000000000000000 55 88888888 33333 3 3 77 33333333333333 0 5 5 0 5 000000 0 0 000 0 0 0 00 0 0 0 00 00 0 0 0 0 000 0 00 0 0 0 0 000 0 00 0 0 0 0 0000 0 00 000 0 000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 0 0 5 5 0 555 00 5 5 000 0000000000000000000000000000000000000000000 000 000 00 0 5 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00000 0 0 0 0 0 00000000 0 3 0
consensus : NNNNNNNNNNNNNNNNNNNNCATTCCAGTTCTTTTCAAATTC-GGTCTGTAAAGCGTNTTCCTCNGGACAAGGGACGCCCATAAATCG-AA-C-------TT----ATTTCCGGGACTC--TG-CACCNCTGGGGC-CNTAG---AGGC-GG-G--CAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA--CC----GGANATGTC---T----AAA-GCA-AAAGACGTAGGNCCGTGAAGNCGGGCCTCTACCNAAATNGTAAANTTCGTGGTCCCNGGGNTAGGGGTTCNGNCCCCAGGNTGGGGCCAAACNTGGTANACNNCATCTATGGNGTAAACATTTTTTTTGANGAAAGAANATNAACGTCAGATCAATANGCTACTTTNATCATTAATTTNA------AACTAAAT-----GAATATTTGG-AATGANCAGGGAGCCTTTTATCTTGATTATAACCNCCCGCAACAAANTT-TAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATCTACCCNTNGGACGAAGATGTT-CCTTATNNNATGTTTNGGGT-------TCGAAAGGTCAAGCGCACTNGACANCAAAGNANCGATATGGTTTTNCNGGCTCTANAGCGTTATNCTTTCCACGTCGAGTCAAATCCATTTCATGTCATACATGNNTACAAAACCNTGGGTCGCCGAAGATGTTCTCTATTGNGTTTGGGGTCGAAGGGTCAAGCGCACCGGGCATCAAAGTAGCGATATGGNTTTCTTGGCTTTCAG--CGTT-TACTTTCCACATCGAGTCAAATTCATATCATACATATATATAAAACCATGGGTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAANNNNNNACTCAGGTGACCGNTAAGGCCTGTGGGCCTCTTGTT-TTTAT
Reference ( gi|1 ) : ATCTTGATGAAATGCTTGGACATTCCTATTCTTTTAAAATTTTGGTATG--ATGCATCTTT---TGGACAAGGGA--CTCATAAATTG------------TT----ATTTTCAGGTCTCT-TG-CACCCCTGGGGC-CATAG---GGGC-GG-G--CAAAAAGTGACCAA---------TTTTCAAAACTCTTC------TCTACA-ACT----GGATATGTC---T----AAATGCATAGTGATGTAGAGCTA-GAAGT----CCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGCTCTGACCCCAGGGCAAGGCCAAACTTGGTAAATAGTATTTAT-ATGTAAACATTT-----GAAGAAAAAAAATC----TC---T--A-ATGCTA--TTG-TTATTAATTTGA------AACTAAAT-----GAATATTTGG-AATGAGAAGGGAGCCTTTTATTATAATTAT-ACCCCCTGCAAC-AAGTTACATGTAGGGGGATACTGGAAT-CAGGTTGCCCGTCCATCGGTCTGTAGACAGAATGATTCACAGGTTTTAAATTGTTAGCCTTTCCACCTAGAGTCACTATATTATGCATATGGTCTACCAGTGGGACGAAAATGTTCCCTATTGAATATAGGGTCCAAAGTTCAAGCACACTGGACATCGAAATAGCGATATTGTTTCTGGGCTCAATAGCATTAT---------------TCA-----TCATACATATGGACTACATGTACGCATGGGACAAATATGTTACCTT-TAGAA--TTTGGGATGAAAAGATC-AAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGTTCTAGAGCATTATCCTTTCTACCTAGAGTCA---CTAT-----A-CATACA-ATCTAC----TCATGA--TAT-GAAGATATTCTTTATCGAATTTGGGTTCCAAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGATCT-AGATCATTATTCTTACTACCTAGAGTC--------ACTATACATATA-ATCTACTCA-GGAT-AT-GAACATATTCTCTATCGAATTTGAGGTCAAA-GGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGATGATAACATGTGAACAAAAGACTATATTGAGA-TTAAAAATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTCAT
gi|3 : CATTCCAGTTCTTTTCAAATTT-GGTTTG--AAGCATGTTT---AGGACAAA-------TATACATTGCAACCTGGCACGTA----AATTTCAGGACTCG-TG-CACCACTGGGGC-CTTAG---GAGTGGG-G--CAAAAACTGGCAAA---------TTTTCAAAGATCTTCTCAAGTTCCACACATTTAGGGAATAAGCC---TTAAAAAAACCA-AAAAACGTAAGTCCATGAAGCCGGGCCTCTATTTAAATAGTAAAATTCATGGTCCCAGGATTAGGGGTTCAGCCCCTAGGTTGGGG-CAAATATG--AGACTTCATCTATGGGGTA------T-----GATGAAAGAAAATCAACGTC---TCAA-AAGCTAC-TTGATCA--AATTTTACCTTTTAATTAGGTGCATGGAATCTTTGGTGATAGCAAGGG
gi|4 : tattgcaattggttctcgtccgtcgtcgtgcgttaacaattgaacatttttaacttcttaataatttttaactacTTTTCAAATTC-AGTCTGTAAAGCGTCTTCCTCTGGACAAGGGACGCCCATAAA-CG------------TTCTAAATTGCCAGGACTCTCTGCCACCCCTTGGGCACCTGGAGCAGGC-GGTG--CAAAAAGT-ACCAT---------TTTGTAAAA
gi|5 : TAAATTGGAAAC-------TT----TTTTCCGAGTTTC---G-CAATTCTGAGAT-TATAG---AGGT-AG-AACCAAGA--TGACCAAATTTGACGTTTTTCAAAAATCTTT------TCTAGA-TCC----GGACATTTCAGAT----GAATGTACAG
gi|2 : AAAAGTGAACAA---------TTTTCAAAAATCTG---------TGCA---T----GGTGATGT---------AGA-GCAGGAAGAC-TAGAGCAG-GAAGA----CCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGATGGGGCCAAACTTGGTACATAGTATTTAT-ATGTAAACATTTTTTTTGAA-----AACATG----TCAGAT--ATATGCTACTTTC-TTATTAATTTGC------AACAAAAT-----GAA-ATTTGT-AATGAACATGAAGCCTTTTATCTTAATTATAACCACCCACAAT-AATTT-TAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATAGACTAC-------CCTTGAACAAAGATGTT--CTT-TATTATGTTTGG----------TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTT-CAGCGTT-TACTTTCCACATCGAGTCAAATTCAT-----ATCATACATATATATAAAACCATGGGTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTC
gi|10 : cA------AACTGAAT-----GGATATTTGG-AATGAGCAG--------------TGATTAT-ACCCCCGGCAACAAAGTT
gi|2 : CATATG------ATCTACCCATGGGATGAAGATGTT-CCTTATCGAA--TTTTGGGT-------TC-AAAGG-CAAGCGCACTTGACAACAAAGAATCAATA-GG-TTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCA---CCATTTCATG-CATATA-GACTAC----CCTTGA---AC-AAAGATGTTCTTTATTATGTTTGG--TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTTCAG--CGTT-TACTTTCCACATCGAGTCAAATTCATATCATACATATATATAAAACCATGGGTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTT
gi|11 : caaaagtgaacaattttcaaaaatctgtgcatggtgatgtagagcaggaagactagagcaggaagacctctaccaaaattgtaaatttggtgatccccggggtaggggttctgaccccaggatggggccaaacttggtacatagtatttatatgtaaacattttttttgaaaacatgtcagatatatgctactttcttattaatttgcaacaaaatgaaatttgtaatgaacatgaagccttttatcttaattataaccacccacaataattttaggaaagggggtactggaatgctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatataaggAGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAAc
gi|7 : ACTCAGGTGACCAATAAGGCCTGTGGGCCTCTTGTt
gi|13 : atATTCAGGTTGCTGATAAGGCCTGTGGGCCTCTTGTTATTTATgtatgacttgtattttaa
gi|12 : taacCTTAAGTGACCGTTAAGGCCTGTGAGTCTCTTCTC-TTa
gi|16 : ACCGTTAAGGCCTGTGGGCTTCTTGTT-TTttagggggaat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTTCAGATTCACTATTTAAAGTCATTTGGGCGACCTATTGCTATATCTTCATTCATGGTTGTGTGTTAACAACTGAACATTTATAACTTCTT
Unaligned ( gi|8 ): TCTTCGTCCGTTGACAATTGAATATTTTCAACTTTTTGCTAACCACCATTCCAG
Unaligned ( gi|9 ): CGTCCGTCATCGTCCGTTAACAATTTTAACTTCTTGATAATCACCAGTCCAATT
Unaligned ( gi|14 ): ACTTTGTTCCCGTTCCGTCGTCGTCCGTCAACAAATTGAACATTTT
Unaligned ( gi|15 ): AAGCTCAGCTGACTAAATAAGTCCTGTTGGCCTCTT
Alignments
lowQualScore : 11111111111111111111111 11111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 33 33333 2222222 7777777777777777777777 111 222 1 1 111 2222 333333333 5555555555555555555555555555555555 1 11111 222 4444 222 33333333333 88888888888888888 222222 222222 22222 1 11 11 11 1 22 22 555555555555555 22222 44444444 2 00000000000000000000000 1 1 11 1 1 00000000000000 22222222222 3333333 222 1 1 2 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 33333 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 22 1
lowQualScore : 4 44 3 00 0 1 88888 7777777 7777777777777777777777 44 777 333 0 1 0 1 777 7777 0 222222222 6 7777777777777777777777777777777777 3 88888 6 11 888 1 3333 1 1 1 6 0 1 1 1 1 1 6 1 6 1 3333 0 555 77777777777 888888 1 11111111111111111 555555 0 7 1 888888 55555 3 0 2 1 333 11 0 44 1 3 33 2 4 5 4 4 2 3 2 2 4 2 4 2 2 4 4 22 3 4 4 3 22 2 4 2 333333333333333 66666 77777777 1 1 6 2 0 22222222222222222222222 5 6 1 1 1 1 5 888 66 5 1 0 2 66666666666666 88888888888 1 9999999 999 5 77 2 0 2 6 0 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999 0 6 0 22222 7 6 5 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 5 77 2 666666 77 0
lowQualScore : . .. . .. . . ..... ....... ...................... .. ... ... . . . . ... .... . ......... . .................................. . ..... . .. ... . .... . . . . . . . . . . . . . . .... . ... ........... ...... . ................. ...... . . . ...... ..... . . . . ... .. . .. . . .. . . . . . . . . . . . . . . . . .. . . . . .. . . . ............... ..... ........ . . . . . ....................... . . . . . . . ... .. . . . . .............. ........... . ....... ... . .. . . . . . . ............................................................................... . . . ..... . . . . ........................................................................................ . . .. . ...... .. .
lowQualScore : 0 00 7 77 7 0 77777 7777777 2222222222222222222222 55 888 222 0 0 0 0 555 8888 8 000000000 5 3333333333333333333333333333333333 3 33333 7 77 000 0 3333 0 0 0 7 7 0 0 0 0 0 7 0 7 0 3333 7 000 00000000000 333333 0 00000000000000000 333333 7 3 0 888888 00000 2 0 5 0 000 33 7 77 0 7 33 5 0 0 0 0 5 0 5 5 0 5 0 5 5 0 0 55 0 0 0 0 55 5 0 5 555555555555555 55555 00000000 0 0 0 5 0 55555555555555555555555 0 0 0 0 0 0 5 000 55 5 0 5 5 00000000000000 00000000000 0 5555555 000 5 00 5 5 5 0 5 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00000 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 55 5 000000 77 0
consensus : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGAC--CCATAAA---TTG--AACTT---------ATTTCCAGGN--CTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGG-GG-CAAAAAGTGACCAA---------TTTTCAAAAATCTTCTC------TACA-CC----GGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAAGNC----CTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTATA-TGTAAACATTT----TGAAGAAAGAAAATC---GTC---TCAATA-GCTAC-TTCGTTATTAATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-TAATTATAACCCCCCGCAACAAGTTTCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACNCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAA-CTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCT-AGATCATTATTCTTACTACCTAGAGTC--------ACTATACATATA-ATCTACTCA-GGAT-AT-GAACATATTCTCTATCGAATTTGAGGTCAAA-GGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGN-TAAGGCCTGTGGGCCTCTTGTT-TTTAT
Reference ( family-4934 ) : NNNNNNNNNNNNNNNNNNNNCATTCCAGTTCTTTTCAAATTC-GGTCTGTAAAGCGTNTTCCTCNGGACAAGGGACGCCCATAAA---TCG--AACTT---------ATTTCCGGGA--CTC-T-G-CACCNCTGGGGC-CNTAG---AGGCGG-G--CAAAAAGTGACCAA---------TTTTCAAAAATCTTCTC------TACA-CC----GGANAT--GTCT-----AAA-GCAA-AA-GACGTAGGNCCGTGAAGNCGGGCCTCTACCNAAATNGTAAANTTCGTGGTCCCNGGGNTAGGGGTTCNGNCCCCAGGNTGGGGCCAAACNTGGTANACNNCATCTATGGNGTAAACATTTTTTTTGANGAAAGAANATNAACGTCAGATCAATANGCTACTTTNATCATTAATTTNA------AACTAAAT-----GAATATTTGG-AATGANCAGGGAGCCTTTTATCTTGATTATAACCNCCCGCAACAAANTTTAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATCTACCCNTNGGACGAAGATGTT-CCTTATNNNATGTTTNGGGT-------TCGAAAGGTCAAGCGCACTNGACANCAAAGNANCGATATGGTTTTNCNGGCTCTANAGCGTTATNCTTTCCACGTCGAGTCAAATCCATTTCATGTCATACATGNNTACAAAACCNTGG-GTCGCCGAAGATGTTCTCTATTGNGTTTGGGGTCGAAGGGTCAAGCGCACCGGGCATCAAAGTAGCGATATGGNTTTCTTGGCTTTCAG--CGTT-TACTTTCCACATCGAGTCAAATTCATATCATACATATATATAAAACCATGGGTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAANNNNNNACTCAGGTGACCGN-TAAGGCCTGTGGGCCTCTTGTT-TTTAT
gi|1 : CATTCCTATTCTTTTAAAATTTTGGTATG--ATGCATCTTT---TGGACAAGGGAC--TCATAAA---TTG-----TT---------ATTTTCAGGT--CTC-TTG-CACCCCTGGGGC-CATAG---GGGCGG-G--CAAAAAGTGACCAA---------TTTTCAAAACTCTTCTC------TACAACT----GGATAT--GTCT-----AAATGCAT-AGTGATGTAGAGCTA-GAAGTC----CTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGCTCTGACCCCAGGGCAAGGCCAAACTTGGTAAATAGTATTTATA-TGTAAACATTT-----GAAGAAAAAAAATC----TC----TAAT--GCTA---TTGTTATTAATTTGA------AACTAAAT-----GAATATTTGG-AATGAGAAGGGAGCCTTTTATTATAATTATA-CCCCCTGCAACAAGTTACATGTAGGGGGATACTGGAAT-CAGGTTGCCCGTCCATCGGTCTGTAGACAGAATGATTCACAGGTTTTAAATTGTTAGCCTTTCCACCTAGAGTCACTATATTATGCATATGGTCTACCAGTGGGACGAAAATGTTCCCTATTGAATATAGGGTCCAAAGTTCAAGCACACTGGACATCGAAATAGCGATATTGTTTCTGGGCTCAATAGCATTAT---------------TCA-----TCATACATATGGACTACATGTACGCATGGGACAAATATGTTACCTT-TAGAA--TTTGGGATGAAAAGATC-AAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGTTCTAGAGCATTATCCTTTCTACCTAGAGTCA---CTAT---A---CATACA-ATCTAC----TCATGATAT----GAAGATATTCTTTATCGAATTTGGGTTCCAAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGATCT-AGATCATTATTCTTACTACCTAGAGTC--------ACTATACATATA-ATCTACTCA-GGAT-AT-GAACATATTCTCTATCGAATTTGAGGTCAAA-GGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGATGATAACATGTGAACAAAAGACTATATTGAGA-TTAAAAATGCAAACATGAGACTCAGGTGACCGT-TAAGGCCTGTGGGCCTCTTGTT-TTCAT
gi|10 : atcttgatgaaatgcttggaA------AACTGAAT-----GGATATTTGG-AATGAGCAG--------------TGATTAT-ACCCCCGGCAACAAAGTT
gi|11 : AGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAA
gi|12 : CTTAAGTGACCGT-TAAGGCCTGTGAGTCTCTTCTC-TTTt
gi|13 : ATTCAGGTTGCTGA-TAAGGCCTGTGGGCCTCTTGTTATTTATtagggggaat
gi|15 : taacCTCAGCTGACTAAATAAGTCCTGTTGGCCTCTTa
gi|16 : aagACCGT-TAAGGCCTGTGGGCTTCTTGTT-TTT
gi|2 : AAAAGTGAACAA---------TTTTCAAAAATCTG---------TGCA-T-----GGTGAT--GT-------AGA-GCAGGAA-GAC-TAGAGCAG-GAAGAC----CTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGATGGGGCCAAACTTGGTACATAGTATTTATA-TGTAAACATTTTTTTTGAA-----AACAT----GTCAGAT--ATATGCTACTTTC-TTATTAATTTGC------AACAAAAT-----GAA-ATTTGT-AATGAACATGAAGCCTTTTATCTTAATTATAACCACCCACAATAA-TTTTAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATAGACTA-------CCCTTGAACAAAGATGTT-CTTTAT--TATGTTTGG----------TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTT-CAGCGTT-TACTTTCCACATCGAGTCAAA-----TTCATATCATACATATATATAAAACCATGG-GTCGTCGAAGA---TCTCTA-TGAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTCttta
gi|3 : cCATTCCAGTTCTTTTCAAATTT-GGTTTG--AAGCATGTTT---AGGACAAA-------TATACA---TTGC-AACCTGGCACGTAAATTTC-AGGA--CTCGT-G-CACCACTGGGGC-CTTAG---GAGTGG-GG-CAAAAACTGGCAAA---------TTTTCAAAGATCTTCTCAAGTTCCACA-CATTTAGGGAATAAGCCTTAAAAAAA-CCAA-AA-AACGTAAGTCCATGAAGCCGGGCCTCTATTTAAATAGTAAAATTCATGGTCCCAGGATTAGGGGTTCAGCCCCTAGGTTGGGG-CAAATATG--AGACTTCATCTATGGGGTA-----------TGATGAAAGAAAATCAACGTC---TCAA-AAGCTAC-TTGATCA--AATTTTACCTTTTAATTAGGTGCATGGAATCTTTGGTGAT-AGCAAGG
gi|4 : tattgcaattggttctcgtccgtcgtcgtgcgttaacaattgaacatttttaacttcttaataatttttaactacTTTTCAAATTC-AGTCTGTAAAGCGTCTTCCTCTGGACAAGGGACGCCCATAAACGTTCT--AA------------ATTGCCAGGACTCTC-T-GCCACCCCTTGGGCACCTGGAGCAGGCGGTG--CAAAAAGT-ACCAT---------TTTGTAAAAg
gi|5 : TAAA---TTGGAAACTT---------TTTTCCGAGT--TTC---G-CAATTCTGAGAT-TATAG---AGGTAG-AACCAAGA--TGACCAAATTTGACGTTTTTCAAAAATCTTTTC------TAGATCC----GGACAT--TTC
gi|7 : ACTCAGGTGACCAA-TAAGGCCTGTGGGCCTCTTGTagatgaatgtacag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAGATTCACTATTTAAAGTCATTTGGGCGACCTATTGCTATATCTTCATTCATGGTTGTGTGTTAACAACTGAACATTTATAACTTCTT
Unaligned ( gi|8 ): TCTTCGTCCGTTGACAATTGAATATTTTCAACTTTTTGCTAACCACCATTCCAG
Unaligned ( gi|9 ): CGTCCGTCATCGTCCGTTAACAATTTTAACTTCTTGATAATCACCAGTCCAATT
Unaligned ( gi|14 ): ACTTTGTTCCCGTTCCGTCGTCGTCCGTCAACAAATTGAACATTTT
Alignments
lowQualScore : 11 11 222 2222222 111 7777777777777777 111 222 1 1 111 333333333 5555555555555555555555555555555555555 1 11111 1 2222 1 444444444444444444444444444444444444444444 222 222222 22222 1 33 11 1 1 11 11 555555555555555 22222 3333333 1 22222 11 4444444444 1 1 11 1 7777777777777 1 2222 2222222 222 1 1 1 11 1
lowQualScore : 1 44 1 88 0 333 4444444 777 0000000000000000 2 444 333 0 0 0 1 777 66 5 222222222 7777777777777777777777777777777777777 3 44444 6 1 3 8888 1 11 6 6 1 3 666666666666666666666666666666666666666666 333 7 888888 55555 3 0 2 333 00 44 3 3 6 4 1 1 5 1 1 2 1 1 1 1 1 1 1 2 1 1 66 1 1 1 1 66 1 1 1 333333333333333 66666 7777777 1 1 1 5 55555 88 1111111111 5 5 1 66 5 1 1 1 6666666666666 5 1 4444 7777777 111 5 1 1 2 5 1 5 88 1 77 0
lowQualScore : . .. . .. . ... ....... ... ................ . ... ... . . . . ... .. . ......... ..................................... . ..... . . . .... . .. . . . . .......................................... ... . ...... ..... . . . ... .. .. . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ............... ..... ....... . . . . ..... .. .......... . . . .. . . . . ............. . . .... ....... ... . . . . . . . .. . .. .
lowQualScore : 0 00 0 33 7 333 3333333 555 5555555555555555 5 888 222 0 2 0 0 555 88 0 000000000 1111111111111111111111111111111111111 3 77777 7 0 3 3333 0 77 7 7 0 3 333333333333333333333333333333333333333333 000 3 888888 00000 2 0 5 000 33 77 7 3 7 0 0 0 0 0 0 5 0 0 0 0 0 0 0 5 0 0 55 0 0 0 0 55 0 0 0 555555555555555 55555 5555555 0 0 0 5 55555 00 0000000000 0 5 0 55 5 0 0 0 0000000000000 5 0 5555 5555555 555 0 0 0 5 5 0 0 55 0 77 0
consensus : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTT-NTTATTAATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-TAATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGN-TAAGGCCTGTGGGCCTCTTGTT-TTTAT
Reference ( family-4934 ) : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--NCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTCGTTATTAATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-TAATTATAACCCCCCGCAAC-AAGTTTCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACNCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGN-TAAGGCCTGTGGGCCTCTTGTT-TTTAT
gi|1 : CATTCCTATTCTTTTAAAATTTTGGTATG--ATGCATCTTT---TGGACAAGGGA--CTCATAAA---TTG-----TT---------ATTTTCAGG--TCTC-TTG-CACCCCTGGGGC-CATAG---GGGCGGG-CAAAAAGTGACCAA---------TTTTCAAAACTCTTC------TCTACAAC----TGGATAT--GTCT-----AAATGCAT-AGTGATGTAGAGCTA-GAA----GTCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGCTCTGACCCCAGGGCAAGGCCAAACTTGGTAAATAGTATTTAT-ATGTAAACATTT-----GAAGAAAAAAAAT---C-TCT-A---AT--GCTATT--GTTATTAATTTGA------AACTAAAT-----GAATATTTGG-AATGAGAAGGGAGCCTTTTATTATAATTATA-CCCCCTGCAAC-AAGTTACATGTAGGGGGATACTGGAAT-CAGGTTGCCCGTCCATCGGTCTGTAGACAGAATGATTCACAGGTTTTAAATTGTTAGCCTTTCCACCTAGAGTCACTATATTATGCATATGGTCTACCAGTGGGACGAAAATGTTCCCTATTGAATATAGGGTCCAAAGTTCAAGCACACTGGACATCGAAATAGCGATATTGTTTCTGGGCTCAATAGCATTAT---------------TCA-----TCATACATATGGACTACATGTACGCATGGGACAAATATGTTACCTT-TAGAAT--TTGGGATGAAAAGATC-AAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGGTTT-CTGGGTTCTAGAGCATTATCCTTTCTACCTAGAGTCA--CTAT-----A-CATACA-ATCTAC----TCATGATAT----GAAGATATTCTTTATCGAATTTGGGTTCCAAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGATGATAACATGTGAACAAAAGACTATATTGAGA-TTAAAAATGCAAACATGAGACTCAGGTGACCGT-TAAGGCCTGTGGGCCTCTTGTT-TTCAT
gi|10 : atcttgatgaaatgcttggaA------AACTGAAT-----GGATATTTGG-AATGAGCAG--------------TGATTAT-ACCCCCGGCAACAAAGTT
gi|11 : AGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAA
gi|12 : CTTAAGTGACCGT-TAAGGCCTGTGAGTCTCTTCTC-TTTt
gi|13 : ATTCAGGTTGCTGA-TAAGGCCTGTGGGCCTCTTGTTATTTATtagggggaat
gi|15 : taacCTCAGCTGACTAAATAAGTCCTGTTGGCCTCTTa
gi|16 : aagACCGT-TAAGGCCTGTGGGCTTCTTGTT-TTT
gi|2 : AAAAGTGAACAA---------TTTTCAAAAATCTG---------TGCA-T-----GGTGAT--GT-------AGA-GCAGGAA-GAC-TAGAGCAG-GAA----GACCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGATGGGGCCAAACTTGGTACATAGTATTTAT-ATGTAAACATTTTTTTTGAAAA-----------CATGTCAGATATATGCTACTTTCTTATTAATTTGC------AACAAAAT-----GAA-ATTTGT-AATGAACATGAAGCCTTTTATCTTAATTATAACCACCCACAAT-AA-TTTTAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATAGACTAC-------CCTTGAACAAAGATGTT-CTTTAT--TATGTTTGG----------TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTT-CAGCGTT-TACTTTCCACATCGAGTCAAA----TTCATATCATACATATATATAAAACCATGG-GTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTCttta
gi|3 : cCATTCCAGTTCTTTTCAAATTT-GGTTTG--AAGCATGTTT---AGGACAAA-------TATACA---TTGC-AACCTGGCACGTAAATTTC-AGG--ACTCGT-G-CACCACTGGGGC-CTTAG---GAGTGGGGCAAAAACTGGCAAA---------TTTTCAAAGATCTTCTCAAGTTCCACA-CATTTAGGGAATAAGCCTTAAAAAAA-CCAA-AA-AACGTAAGTCCATGAAGCCGGGCCTCTATTTAAATAGTAAAATTCATGGTCCCAGGATTAGGGGTTCAGCCCCTAGGTTGGGG-CAAATATG--AGACTTCATCTATGGGGTA-------T----GATGAAAGAAAATCAACGTCTCA---AAA-GCTACTTGATCA--AATTTTACCTTTTAATTAGGTGCATGGAATCTTTGGTGAT-AGCAAGG
gi|4 : tattgcaattggttctcgtccgtcgtcgtgcgttaacaattgaacatttttaacttcttaataatttttaactacTTTTCAAATTC-AGTCTGTAAAGCGTCTTCCTCTGGACAAGGGACGCCCATAAACGTTCT--AA------------ATTGCCAGGACTCTC-T-GCCACCCCTTGGGCACCTGGAGCAGGCGGTGCAAAAAGT-ACCAT---------TTTGTAAAAg
gi|5 : TAAA---TTGGAAACTT---------TTTTCCGAG--TTTC---G-CAATTCTGAGAT-TATAG---AGGTAGAACCAAGA-TGACCAAATTTGACGTTTTTCAAAAATCTTT------TCTAGATC----CGGACAT--TTC
gi|7 : ACTCAGGTGACCAA-TAAGGCCTGTGGGCCTCTTGTagatgaatgtacag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAGATTCACTATTTAAAGTCATTTGGGCGACCTATTGCTATATCTTCATTCATGGTTGTGTGTTAACAACTGAACATTTATAACTTCTT
Unaligned ( gi|8 ): TCTTCGTCCGTTGACAATTGAATATTTTCAACTTTTTGCTAACCACCATTCCAG
Unaligned ( gi|9 ): CGTCCGTCATCGTCCGTTAACAATTTTAACTTCTTGATAATCACCAGTCCAATT
Unaligned ( gi|14 ): ACTTTGTTCCCGTTCCGTCGTCGTCCGTCAACAAATTGAACATTTT
Alignments
lowQualScore : 11 11 222 2222222 111 7777777777777777 11 222 1 1 111 333333333 5555555555555555555555555555555555555 1 11111 1 2222 1 444444444444444444444444444444444444444444 222 1 222222 22222 1 2222 11 1 1 11 11 555555555555555 22222 3333333 1 22222 11 4444444444 1 1 11 1 7777777777777 1 2222 2222222 222 1 1 1 11 1
lowQualScore : 1 44 1 88 0 333 4444444 777 0000000000000000 2 33 333 0 0 0 1 777 66 5 222222222 7777777777777777777777777777777777777 3 44444 6 1 3 8888 1 11 6 6 1 3 666666666666666666666666666666666666666666 6 111 3 888888 55555 3 0 2 333 1111 44 3 3 6 1 1 1 5 1 1 2 1 1 1 1 1 1 1 2 1 1 66 1 1 1 1 66 1 1 1 333333333333333 66666 2222222 1 1 1 5 55555 88 1111111111 5 5 1 66 5 1 1 1 6666666666666 5 1 4444 7777777 111 5 1 1 2 5 1 5 88 1 1 0
lowQualScore : . .. . .. . ... ....... ... ................ . .. ... . . . . ... .. . ......... ..................................... . ..... . . . .... . .. . . . . .......................................... . ... . ...... ..... . . . ... .... .. . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ............... ..... ....... . . . . ..... .. .......... . . . .. . . . . ............. . . .... ....... ... . . . . . . . .. . . .
lowQualScore : 0 00 0 33 7 333 3333333 555 5555555555555555 5 88 222 0 2 0 0 555 88 0 000000000 1111111111111111111111111111111111111 3 77777 7 0 3 3333 0 77 7 7 0 3 333333333333333333333333333333333333333333 7 777 3 888888 00000 2 0 5 000 3333 77 7 3 7 0 0 0 0 0 0 5 0 0 0 0 0 0 0 5 0 0 55 0 0 0 0 55 0 0 0 555555555555555 55555 0000000 0 0 0 5 55555 00 0000000000 0 5 0 55 5 0 0 0 0000000000000 5 0 5555 5555555 555 0 0 0 5 5 0 0 55 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
Reference ( family-4934 ) : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTN-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGNTAAGGCCTGTGGGCCTCTTGTT-TTTAT
gi|1 : CATTCCTATTCTTTTAAAATTTTGGTATG--ATGCATCTTT---TGGACAAGGGA--CTCATAAA---TTG-----TT---------ATTTTCAGG--TCTC-TTG-CACCCCTGGGGC-CATAG---GGGCGGG-CAAAAAGTGACCAA---------TTTTCAAAACTCTTC------TCTACAAC----TGGATAT--GTCT-----AAATGCAT-AGTGATGTAGAGCTA-GAA----GTCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGCTCTGACCCCAGGGCAAGGCCAAACTTGGTAAATAGTATTTAT-ATGTAAACATTT-----GAAGAAAAAAAAT---C-TCT-A---AT--GCTA-TTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGAAGGGAGCCTTTTATTAT-AATTATA-CCCCCTGCAAC-AAGTTACATGTAGGGGGATACTGGAAT-CAGGTTGCCCGTCCATCGGTCTGTAGACAGAATGATTCACAGGTTTTAAATTGTTAGCCTTTCCACCTAGAGTCACTATATTATGCATATGGTCTACCAGTGGGACGAAAATGTTCCCTATTGAATATAGGGTCCAAAGTTCAAGCACACTGGACATCGAAATAGCGATATTGTTTCTGGGCTCAATAGCATTAT---------------TCA-----TCATACATATGGACTACATGTACGCATGGGACAAATATGTTACCTT-TAGAAT--TTGGGATGAAAAGATC-AAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGGTTT-CTGGGTTCTAGAGCATTATCCTTTCTACCTAGAGTCA--CTAT-----A-CATACA-ATCTAC----TCATGATAT----GAAGATATTCTTTATCGAATTTGGGTTCCAAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGATGATAACATGTGAACAAAAGACTATATTGAGA-TTAAAAATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTCAT
gi|10 : atcttgatgaaatgcttggaA------AACTGAAT-----GGATATTTGG-AATGAGCAG--------------T-GATTAT-ACCCCCGGCAACAAAGTT
gi|11 : AGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAA
gi|12 : CTTAAGTGACCGTTAAGGCCTGTGAGTCTCTTCTC-TTTt
gi|13 : ATTCAGGTTGCTGATAAGGCCTGTGGGCCTCTTGTTATTTATtagggggaat
gi|16 : taacACCGTTAAGGCCTGTGGGCTTCTTGTT-TTTa
gi|2 : AAAAGTGAACAA---------TTTTCAAAAATCTG---------TGCA-T-----GGTGAT--GT-------AGA-GCAGGAA-GAC-TAGAGCAG-GAA----GACCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGATGGGGCCAAACTTGGTACATAGTATTTAT-ATGTAAACATTTTTTTTGAAAA-----------CATGTCAGATATATGCTACTTTCTTATT-AATTTGC------AACAAAAT-----GAA-ATTTGT-AATGAACATGAAGCCTTTTATC-TTAATTATAACCACCCACAAT-AA-TTTTAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATAGACTAC-------CCTTGAACAAAGATGTT-CTTTAT--TATGTTTGG----------TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTT-CAGCGTT-TACTTTCCACATCGAGTCAAA----TTCATATCATACATATATATAAAACCATGG-GTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTCttta
gi|3 : cCATTCCAGTTCTTTTCAAATTT-GGTTTG--AAGCATGTTT---AGGACAAA-------TATACA---TTGC-AACCTGGCACGTAAATTTC-AGG--ACTCGT-G-CACCACTGGGGC-CTTAG---GAGTGGGGCAAAAACTGGCAAA---------TTTTCAAAGATCTTCTCAAGTTCCACA-CATTTAGGGAATAAGCCTTAAAAAAA-CCAA-AA-AACGTAAGTCCATGAAGCCGGGCCTCTATTTAAATAGTAAAATTCATGGTCCCAGGATTAGGGGTTCAGCCCCTAGGTTGGGG-CAAATATG--AGACTTCATCTATGGGGTA-------T----GATGAAAGAAAATCAACGTCTCA---AAA-GCTACTTG---ATCAAATTTTACCTTTTAATTAGGTGCATGGAATCTTTGGTGAT-AGCAAGG
gi|4 : tattgcaattggttctcgtccgtcgtcgtgcgttaacaattgaacatttttaacttcttaataatttttaactacTTTTCAAATTC-AGTCTGTAAAGCGTCTTCCTCTGGACAAGGGACGCCCATAAACGTTCT--AA------------ATTGCCAGGACTCTC-T-GCCACCCCTTGGGCACCTGGAGCAGGCGGTGCAAAAAGT-ACCAT---------TTTGTAAAAg
gi|5 : TAAA---TTGGAAACTT---------TTTTCCGAG--TTTC---G-CAATTCTGAGAT-TATAG---AGGTAGAACCAAGA-TGACCAAATTTGACGTTTTTCAAAAATCTTT------TCTAGATC----CGGACAT--TTC
gi|7 : ACTCAGGTGACCAATAAGGCCTGTGGGCCTCTTGTagatgaatgtacag
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAGATTCACTATTTAAAGTCATTTGGGCGACCTATTGCTATATCTTCATTCATGGTTGTGTGTTAACAACTGAACATTTATAACTTCTT
Unaligned ( gi|8 ): TCTTCGTCCGTTGACAATTGAATATTTTCAACTTTTTGCTAACCACCATTCCAG
Unaligned ( gi|9 ): CGTCCGTCATCGTCCGTTAACAATTTTAACTTCTTGATAATCACCAGTCCAATT
Unaligned ( gi|14 ): ACTTTGTTCCCGTTCCGTCGTCGTCCGTCAACAAATTGAACATTTT
Unaligned ( gi|15 ): AAGCTCAGCTGACTAAATAAGTCCTGTTGGCCTCTT
Alignments
lowQualScore : 11 11 222 2222222 111 7777777777777777 11 222 1 1 111 333333333 5555555555555555555555555555555555555 1 11111 1 2222 1 444444444444444444444444444444444444444444 22 1 222222 22222 1 2222 11 1 1 11 11 555555555555555 22222 3333333 1 22222 11 4444444444 1 1 11 1 7777777777777 1 2222 2222222 222 1 1 1 11 1
lowQualScore : 1 44 1 88 0 333 4444444 777 0000000000000000 2 33 333 0 0 0 1 777 66 5 222222222 7777777777777777777777777777777777777 3 44444 6 1 3 8888 1 11 6 6 1 3 666666666666666666666666666666666666666666 6 00 3 888888 55555 3 0 2 333 1111 44 3 3 6 1 1 1 5 1 1 2 1 1 1 1 1 1 1 2 1 1 66 1 1 1 1 66 1 1 1 333333333333333 66666 2222222 1 1 1 5 55555 88 1111111111 5 5 1 66 5 1 1 1 6666666666666 5 1 4444 7777777 111 5 1 1 2 5 1 5 88 1 1 0
lowQualScore : . .. . .. . ... ....... ... ................ . .. ... . . . . ... .. . ......... ..................................... . ..... . . . .... . .. . . . . .......................................... . .. . ...... ..... . . . ... .... .. . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ............... ..... ....... . . . . ..... .. .......... . . . .. . . . . ............. . . .... ....... ... . . . . . . . .. . . .
lowQualScore : 0 00 0 33 7 333 3333333 555 5555555555555555 5 88 222 0 2 0 0 555 88 0 000000000 1111111111111111111111111111111111111 3 77777 7 0 3 3333 0 77 7 7 0 3 333333333333333333333333333333333333333333 7 77 3 888888 00000 2 0 5 000 3333 77 7 3 7 0 0 0 0 0 0 5 0 0 0 0 0 0 0 5 0 0 55 0 0 0 0 55 0 0 0 555555555555555 55555 0000000 0 0 0 5 55555 00 0000000000 0 5 0 55 5 0 0 0 0000000000000 5 0 5555 5555555 555 0 0 0 5 5 0 0 55 0 4 0
consensus : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
Reference ( family-4934 ) : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
gi|1 : CATTCCTATTCTTTTAAAATTTTGGTATG--ATGCATCTTT---TGGACAAGGGA--CTCATAAA---TTG-----TT---------ATTTTCAGG--TCTC-TTG-CACCCCTGGGGC-CATAG---GGGCGGG-CAAAAAGTGACCAA---------TTTTCAAAACTCTTC------TCTACAAC----TGGATAT--GTCT-----AAATGCAT-AGTGATGTAGAGCTA-GAA----GTCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGCTCTGACCCCAGGGCAAGGCCAAACTTGGTAAATAGTATTTAT-ATGTAAACATTT-----GAAGAAAAAAAAT---C-TCT-A---AT--GCTA-TTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGAAGGGAGCCTTTTATTAT-AATTATA-CCCCCTGCAAC-AAGTTACATGTAGGGGGATACTGGAAT-CAGGTTGCCCGTCCATCGGTCTGTAGACAGAATGATTCACAGGTTTTAAATTGTTAGCCTTTCCACCTAGAGTCACTATATTATGCATATGGTCTACCAGTGGGACGAAAATGTTCCCTATTGAATATAGGGTCCAAAGTTCAAGCACACTGGACATCGAAATAGCGATATTGTTTCTGGGCTCAATAGCATTAT---------------TCA-----TCATACATATGGACTACATGTACGCATGGGACAAATATGTTACCTT-TAGAAT--TTGGGATGAAAAGATC-AAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGGTTT-CTGGGTTCTAGAGCATTATCCTTTCTACCTAGAGTCA--CTAT-----A-CATACA-ATCTAC----TCATGATAT----GAAGATATTCTTTATCGAATTTGGGTTCCAAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGATGATAACATGTGAACAAAAGACTATATTGAGA-TTAAAAATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTCAT
gi|10 : atcttgatgaaatgcttggaA------AACTGAAT-----GGATATTTGG-AATGAGCAG--------------T-GATTAT-ACCCCCGGCAACAAAGTT
gi|11 : AGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAA
gi|12 : CTTAAGTGACCGTTAAGGCCTGTGAGTCTCTTCTC-TTTt
gi|13 : ATTCAGGTTGCTGATAAGGCCTGTGGGCCTCTTGTTATTTATtagggggaat
gi|16 : taacACCGTTAAGGCCTGTGGGCTTCTTGTT-TTTa
gi|2 : AAAAGTGAACAA---------TTTTCAAAAATCTG---------TGCA-T-----GGTGAT--GT-------AGA-GCAGGAA-GAC-TAGAGCAG-GAA----GACCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGATGGGGCCAAACTTGGTACATAGTATTTAT-ATGTAAACATTTTTTTTGAAAA-----------CATGTCAGATATATGCTACTTTCTTATT-AATTTGC------AACAAAAT-----GAA-ATTTGT-AATGAACATGAAGCCTTTTATC-TTAATTATAACCACCCACAAT-AA-TTTTAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATAGACTAC-------CCTTGAACAAAGATGTT-CTTTAT--TATGTTTGG----------TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTT-CAGCGTT-TACTTTCCACATCGAGTCAAA----TTCATATCATACATATATATAAAACCATGG-GTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTCttta
gi|3 : cCATTCCAGTTCTTTTCAAATTT-GGTTTG--AAGCATGTTT---AGGACAAA-------TATACA---TTGC-AACCTGGCACGTAAATTTC-AGG--ACTCGT-G-CACCACTGGGGC-CTTAG---GAGTGGGGCAAAAACTGGCAAA---------TTTTCAAAGATCTTCTCAAGTTCCACA-CATTTAGGGAATAAGCCTTAAAAAAA-CCAA-AA-AACGTAAGTCCATGAAGCCGGGCCTCTATTTAAATAGTAAAATTCATGGTCCCAGGATTAGGGGTTCAGCCCCTAGGTTGGGG-CAAATATG--AGACTTCATCTATGGGGTA-------T----GATGAAAGAAAATCAACGTCTCA---AAA-GCTACTTG---ATCAAATTTTACCTTTTAATTAGGTGCATGGAATCTTTGGTGAT-AGCAAGG
gi|4 : tattgcaattggttctcgtccgtcgtcgtgcgttaacaattgaacatttttaacttcttaataatttttaactacTTTTCAAATTC-AGTCTGTAAAGCGTCTTCCTCTGGACAAGGGACGCCCATAAACGTTCT--AA------------ATTGCCAGGACTCTC-T-GCCACCCCTTGGGCACCTGGAGCAGGCGGTGCAAAAAGT-ACCAT---------TTTGTAAAAg
gi|5 : TAAA---TTGGAAACTT---------TTTTCCGAG--TTTC---G-CAATTCTGAGAT-TATAG---AGGTAGAACCAAGA-TGACCAAATTTGACGTTTTTCAAAAATCTTT------TCTAGATC----CGGACAT--TTC
gi|7 : ACTCAGGTGACCAATAAGGCCTGTGGGCCTCTTGTagatgaatgtacag
blockSeqs : A T T TA CTC GGACGCC CGT CAACCTGGCACGTAA C AC GT C A T AGC GG G ATTTGACGT CTCAAGTTCCACACATTTAGGGAATAAGCCTTAAAA . GGAA G A T GCCG A AT C G C G AACATTTTTTTTGAAAACATGTCAGATATAT C CT A CCTTTT GCATG T T G TGA CTT AA G A G T G A G T A G T C C A G A G C T T G T A A T G G T G CCTTTCTACGTCGAG CCATT . C T G . ATT GT . G T T C . A A C AATTCATAT T A AAAA GTCGTC . . G A C A C C . C T A
blockSeqs : C C . . . . GAAACTT C . T . . C . TG C . TGCATGGTGATGT . AAA . C . . G TT . . G . TGATGAAAGAAAATCAACGTCTCAAAA C . . . . T . G AGG T A C . . A .
blockSeqs : . AA . . . . . A . AA G . . . . . . G T .
blockSeqs : . . A
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
finalCons : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAGATTCACTATTTAAAGTCATTTGGGCGACCTATTGCTATATCTTCATTCATGGTTGTGTGTTAACAACTGAACATTTATAACTTCTT
Unaligned ( gi|8 ): TCTTCGTCCGTTGACAATTGAATATTTTCAACTTTTTGCTAACCACCATTCCAG
Unaligned ( gi|9 ): CGTCCGTCATCGTCCGTTAACAATTTTAACTTCTTGATAATCACCAGTCCAATT
Unaligned ( gi|14 ): ACTTTGTTCCCGTTCCGTCGTCGTCCGTCAACAAATTGAACATTTT
Unaligned ( gi|15 ): AAGCTCAGCTGACTAAATAAGTCCTGTTGGCCTCTT
Alignments
lowQualScore : 11 11 222 2222222 111 7777777777777777 11 222 1 1 111 333333333 5555555555555555555555555555555555555 1 11111 1 2222 1 444444444444444444444444444444444444444444 22 1 222222 22222 1 2222 11 1 1 11 11 555555555555555 22222 3333333 1 22222 11 4444444444 1 1 11 1 7777777777777 1 2222 2222222 222 1 1 1 11 1
lowQualScore : 1 44 1 88 0 333 4444444 777 0000000000000000 2 33 333 0 0 0 1 777 66 5 222222222 7777777777777777777777777777777777777 3 44444 6 1 3 8888 1 11 6 6 1 3 666666666666666666666666666666666666666666 6 00 3 888888 55555 3 0 2 333 1111 44 3 3 6 1 1 1 5 1 1 2 1 1 1 1 1 1 1 2 1 1 66 1 1 1 1 66 1 1 1 333333333333333 66666 2222222 1 1 1 5 55555 88 1111111111 5 5 1 66 5 1 1 1 6666666666666 5 1 4444 7777777 111 5 1 1 2 5 1 5 88 1 1 0
lowQualScore : . .. . .. . ... ....... ... ................ . .. ... . . . . ... .. . ......... ..................................... . ..... . . . .... . .. . . . . .......................................... . .. . ...... ..... . . . ... .... .. . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ............... ..... ....... . . . . ..... .. .......... . . . .. . . . . ............. . . .... ....... ... . . . . . . . .. . . .
lowQualScore : 0 00 0 33 7 333 3333333 555 5555555555555555 5 88 222 0 2 0 0 555 88 0 000000000 1111111111111111111111111111111111111 3 77777 7 0 3 3333 0 77 7 7 0 3 333333333333333333333333333333333333333333 7 77 3 888888 00000 2 0 5 000 3333 77 7 3 7 0 0 0 0 0 0 5 0 0 0 0 0 0 0 5 0 0 55 0 0 0 0 55 0 0 0 555555555555555 55555 0000000 0 0 0 5 55555 00 0000000000 0 5 0 55 5 0 0 0 0000000000000 5 0 5555 5555555 555 0 0 0 5 5 0 0 55 0 4 0
consensus : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
Reference ( family-4934 ) : NNNNNNNNNNNNNNNNNNNNCATTCCNGTTCTTTTCAAATTC-GGTNTG--AAGCGTCTTT---TGGACAAGGGA--CCCATAAA---TTG--AACTT---------ATTTCCAGG--TCTC-T-G-CACCCCTGGGGC-CNTAG---GGGCGGGGCAAAAAGTGACCAA---------TTTTCAAAAATCTTC------TCTACA-C----CGGANAT--GTCT-----AAA-GCAN-AA-GACGTAGAGCNA-GAA----GNCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGNCGGGGCCAAACTTGGTANATAGTATTTAT-ATGTAAACATTTT----GAAGAAAGAAAAT---CGTCTCA---ATA-GCTACTTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGCAGGGAGCCTTTTATC-T-AATTATAACCCCCCGCAAC-AAGTTNCANGNAGGGGGGTACTGGAATGCNGGNTGCCCGTCCGTCNGTCTGTAGACAGAATGNTTCNCAGGCNTTAAANTGTTAGCCTTTCCACCCAGAGTCACCATATNANGCATATGGTCTACCCGTGGGACGAAGATGTTCCCTATCGAATNTNGGGTCCAAAGTNCAAGCGCACTNGACANCGAAGNANCGATATNGTTTNCGGGCTCNANAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATGGACTACATGTACGCNTNGGACAAANATGTTACCTTATAGNATGTTTGGGATGAAAAGATCGAAAGGTCAAGTGCACTGGACATCAAAGTAGCGATATGGTTTTCTNGGCTCTANAGCGTTATNCTTTCCACNTNGAGTCAAACTATTTCATATCATACATATNTACAAAACCATGGTGTCGTCGAAGATATTCTCTATCGAATTTGGGNTCNAAGGGTCAAGCGCACCGGGCATCAAAGTAGCAATATGGATTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGNTGATAACATGTGAACAAAAGACTATATTGAGGCTTAAANATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTTAT
gi|1 : CATTCCTATTCTTTTAAAATTTTGGTATG--ATGCATCTTT---TGGACAAGGGA--CTCATAAA---TTG-----TT---------ATTTTCAGG--TCTC-TTG-CACCCCTGGGGC-CATAG---GGGCGGG-CAAAAAGTGACCAA---------TTTTCAAAACTCTTC------TCTACAAC----TGGATAT--GTCT-----AAATGCAT-AGTGATGTAGAGCTA-GAA----GTCCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGCTCTGACCCCAGGGCAAGGCCAAACTTGGTAAATAGTATTTAT-ATGTAAACATTT-----GAAGAAAAAAAAT---C-TCT-A---AT--GCTA-TTG-TTATT-AATTTGA------AACTAAAT-----GAATATTTGG-AATGAGAAGGGAGCCTTTTATTAT-AATTATA-CCCCCTGCAAC-AAGTTACATGTAGGGGGATACTGGAAT-CAGGTTGCCCGTCCATCGGTCTGTAGACAGAATGATTCACAGGTTTTAAATTGTTAGCCTTTCCACCTAGAGTCACTATATTATGCATATGGTCTACCAGTGGGACGAAAATGTTCCCTATTGAATATAGGGTCCAAAGTTCAAGCACACTGGACATCGAAATAGCGATATTGTTTCTGGGCTCAATAGCATTAT---------------TCA-----TCATACATATGGACTACATGTACGCATGGGACAAATATGTTACCTT-TAGAAT--TTGGGATGAAAAGATC-AAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGGTTT-CTGGGTTCTAGAGCATTATCCTTTCTACCTAGAGTCA--CTAT-----A-CATACA-ATCTAC----TCATGATAT----GAAGATATTCTTTATCGAATTTGGGTTCCAAAGGTCAAGTGCACTGGACATCAAAGTAGCAATATGG-TTTCTGGGATCTAGATCATTATTCTTACTACCTAGAGTCACTATACATATAATCTACTCAGGATATGAACATATTCTCTATCGAATTTGAGGTCAAAGGTCAAGCCCACTTGAGATTTAAATCGCAATATGGGTTTTAAATAAAATTCTTTTACGGTTAACAAAATCCTTTTGTGATTGAAATGATAATCTTCTTGTGCATAGGAATCATATGCATATAATGAAAGATGATAACATGTGAACAAAAGACTATATTGAGA-TTAAAAATGCAAACATGAGACTCAGGTGACCGTTAAGGCCTGTGGGCCTCTTGTT-TTCAT
gi|10 : atcttgatgaaatgcttggaA------AACTGAAT-----GGATATTTGG-AATGAGCAG--------------T-GATTAT-ACCCCCGGCAACAAAGTT
gi|11 : AGCTGATAACATGTGAACAAAAGACTATATTGAGGCTT--ACATGCAAA
gi|12 : CTTAAGTGACCGTTAAGGCCTGTGAGTCTCTTCTC-TTTt
gi|13 : ATTCAGGTTGCTGATAAGGCCTGTGGGCCTCTTGTTATTTATtagggggaat
gi|16 : taacACCGTTAAGGCCTGTGGGCTTCTTGTT-TTTa
gi|2 : AAAAGTGAACAA---------TTTTCAAAAATCTG---------TGCA-T-----GGTGAT--GT-------AGA-GCAGGAA-GAC-TAGAGCAG-GAA----GACCTCTACCAAAATTGTAAATTTGGTGATCCCCGGGGTAGGGGTTCTGACCCCAGGATGGGGCCAAACTTGGTACATAGTATTTAT-ATGTAAACATTTTTTTTGAAAA-----------CATGTCAGATATATGCTACTTTCTTATT-AATTTGC------AACAAAAT-----GAA-ATTTGT-AATGAACATGAAGCCTTTTATC-TTAATTATAACCACCCACAAT-AA-TTTTAGGAAAGGGGGTACTGGAATGCTGGATGTCTGTCGGTCTGTCTGTAAACAGAATGCTTTCCAGGCATTAAAGTGTTAGCCTTTCCACCCAGAGTTACCATATAAGGCATATGATCTACCCATGGGATGAAGATGTTCCTTATCGAATTTTGGGTTCAAAG-GCAAGCGCACTTGACAACAAAGAATCAATA-GGTTTGCAGGTTCTAGAGCATTATCCTTTCTACGTCGAGTCACCATTTCATGCATATAGACTAC-------CCTTGAACAAAGATGTT-CTTTAT--TATGTTTGG----------TCGAAAGGTCAAATGCACTGGACATCAAAGTAGCGATATGGTTTTCTTGGCTTT-CAGCGTT-TACTTTCCACATCGAGTCAAA----TTCATATCATACATATATATAAAACCATGG-GTCGTCGAAGA---TCTCTAT-GAATTTGGGGTCAAAGGGTCAAGCCCACCGGGCATTAAAGTAGCAATATGGATTTCttta
gi|3 : cCATTCCAGTTCTTTTCAAATTT-GGTTTG--AAGCATGTTT---AGGACAAA-------TATACA---TTGC-AACCTGGCACGTAAATTTC-AGG--ACTCGT-G-CACCACTGGGGC-CTTAG---GAGTGGGGCAAAAACTGGCAAA---------TTTTCAAAGATCTTCTCAAGTTCCACA-CATTTAGGGAATAAGCCTTAAAAAAA-CCAA-AA-AACGTAAGTCCATGAAGCCGGGCCTCTATTTAAATAGTAAAATTCATGGTCCCAGGATTAGGGGTTCAGCCCCTAGGTTGGGG-CAAATATG--AGACTTCATCTATGGGGTA-------T----GATGAAAGAAAATCAACGTCTCA---AAA-GCTACTTG---ATCAAATTTTACCTTTTAATTAGGTGCATGGAATCTTTGGTGAT-AGCAAGG
gi|4 : tattgcaattggttctcgtccgtcgtcgtgcgttaacaattgaacatttttaacttcttaataatttttaactacTTTTCAAATTC-AGTCTGTAAAGCGTCTTCCTCTGGACAAGGGACGCCCATAAACGTTCT--AA------------ATTGCCAGGACTCTC-T-GCCACCCCTTGGGCACCTGGAGCAGGCGGTGCAAAAAGT-ACCAT---------TTTGTAAAAg
gi|5 : TAAA---TTGGAAACTT---------TTTTCCGAG--TTTC---G-CAATTCTGAGAT-TATAG---AGGTAGAACCAAGA-TGACCAAATTTGACGTTTTTCAAAAATCTTT------TCTAGATC----CGGACAT--TTC
gi|7 : ACTCAGGTGACCAATAAGGCCTGTGGGCCTCTTGTagatgaatgtacag
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAGATTCACTATTTAAAGTCATTTGGGCGACCTATTGCTATATCTTCATTCATGGTTGTGTGTTAACAACTGAACATTTATAACTTCTT
Unaligned ( gi|8 ): TCTTCGTCCGTTGACAATTGAATATTTTCAACTTTTTGCTAACCACCATTCCAG
Unaligned ( gi|9 ): CGTCCGTCATCGTCCGTTAACAATTTTAACTTCTTGATAATCACCAGTCCAATT
Unaligned ( gi|14 ): ACTTTGTTCCCGTTCCGTCGTCGTCCGTCAACAAATTGAACATTTT
Unaligned ( gi|15 ): AAGCTCAGCTGACTAAATAAGTCCTGTTGGCCTCTT