lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111
lowQualScore : 22 222 222 22 1 1 6666666 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 77777777777777777777777 11 2222222 111 22 222 333333333333333333333333333333333333333333333 222222222222222 1111111 222222222222222 222222222222 11111 2222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000 1 111 11 222222 22 22222222222222222 22 2 1
lowQualScore : 6 6 6 6 11 6 777 6 111 33 7 7 6 1111111 6 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 44 22222222222222222222222 6 6 66 8888888 777 3 1 11 999 77 333333333333333333333333333333333333333333333 8 0 4 5 666666666666666 7 888 4 1 6666666 222222222222222 4 555555555555 00000 9 6666666666666666666 1 9 777777777777777777777777777777777777777777777777777777777777777777777777 2 5 000 7 3 88 888888 6 77 4 99999999999999999 77 6 0 6 7 6
lowQualScore : . . . . .. . ... . ... .. . . . ....... . . ................................................................................................................................................................................................................................................................... .. ....................... . . .. ....... ... . . .. ... .. ............................................. . . . . ............... . ... . . ....... ............... . ............ ..... . ................... . . ........................................................................ . . ... . . .. ...... . .. . ................. .. . . . . .
lowQualScore : 0 0 0 0 00 0 000 0 000 00 0 0 0 0000000 0 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 88 00000000000000000000000 0 0 22 0000000 555 7 0 00 000 00 888888888888888888888888888888888888888888888 0 8 8 2 444444444444444 4 888 0 1 7777777 999999999999999 4 222222222222 00000 0 7777777777777777777 4 2 777777777777777777777777777777777777777777777777777777777777777777777777 5 7 333 3 7 33 333333 0 55 0 00000000000000000 55 0 0 0 0 0
consensus : NATTATCTTAAAGATACTAAATTCGATTAACAGCAAAATCGATTTATAAAGGCTATGTTTGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGGGTTGTGNGGNNAAAACCATCTNNTTCATTNGTTTACATGTCCATTCAAGANTTNCCCAGTGTGGNANCCAGNANGNAGTTATAAAACTTTAAGNGAATAAATTATCACTCAAATCCTTTT-AGTATA----TATTT-NTTT-TTTTGTCT-TTACAACATANTGCCACA----ATT-GG--------GGGANCG-GGGGTTNCGG-----AAAANC-GACAAAGCCGGGAA-------------ANGGGGA-TGGCACCCACAGGCGCTT-GCT--GAATATTTTT-CATNATAAGTTATTGTGATTATAAANNAAAAAACT---CAT-GTA-GC-TATA----ACGACA--GTAA----AATGTAT-ATGCATTTGTATGAAGTAT------A------T-GAAACGNTGGA---TTCTGAGNATG-NCTTCC-----------CG--TT-CTCTCTGTAA----TTTCTGCTTCCC-----TTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTCC---A-ATAA---CA--TTN-C-AT--GTACAT--------AATAT-T----TTCCGTTCCGTTT-------TCCGTTCCGCGTTTTAGCAACG-CCCCAAGTATNTA--AACTTGCTGCATATCTTANTGATANTACCTCCCCAAATNGTATTCCTGTATAAAGATGGTGCTACATGTTTTTTTCAT
Reference ( gi|1 ) : AATCATCCTAGAAATATGAAGTTTTGTCAAAATCAAGTTCGAATTAAAAAGGCTATGTTTAGGGA-AAAAGGTGAAAAAATAATTTTCATATTTTTC-AATGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCAT-AG---AT-----CGTT---AATTTT----G-GTGGCAGCCAGTAAAAAGTGATAA---TTTGAACGGATAAATTATAATTGAAATCTTTTTCAGTATACAGGTATTT-GTTT-TTGTGTCTTTTACAATATAATGCCACA----AT------------GGGAGTG-GAGGTTTCTG----AAAAAA--GACAAAATCGGGAA-------------ACGAGAA-TAGCATCCATAGTCGCTT-CCT--GAATATTTAT-CATGATAAATTATGATGACAGTAAAAAAAAAAATT---CATAGTAAAC-TATG----ACGATA--GTAA----AATATAT-ATGTATTTGTATGAAGTAT------A------T-AAAATGATGGA---TCCTGAGCATG-CCTTCC-----------CG--TT-CTCTCTGTAA----TTTCTGTCTCCC-----TTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTCC--GA-ATAA---TA--TTA-C-AT--GTACATA-A-----AATAT-T----TTCTGCTCTGTTT-------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATGA-AA-------------TGTATTC--ATATGAA-ATGGTACTATATGATTTTTCCATAATTGGAATAATATGGGACTCACAGCGG
gi|4 : ATTATCTTAAAGATACTAAATTCGATTAACAGCAAAATCGATTTATAAAGGCTATGTTTGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----------G-GGGATAAAAACCATTTATTTCAT-TGTTTAC-----TATT---GAGTTC----GTATGGGAGCCAGTAAGAA--------------AGC------ATT-------AAATCT------GTGTATGTTTACTT-ATTT-ATTTGTTTATTACAACATACTGTCACATTCGATTGGAGAAAGAGGGGGGGGG-GGGGGGTCAG-----AAAAT--GACAAATCCGAGAA-------------A-GAG-A-TGACACCCTCAAAAGCTTGTTT--GAATATTTTT-AATAATAAGTTA
gi|3 : GGGGTTGTGTGGATAAAACT-TCTTATTCATTGG---ATATGTCCATTCAAAATTTACCCAA-GTGGTATCCAAGATGCAGTTATAAAACTTTAAAGGAATAAATTATCACTCAAATCCTTTTAAGTA------CATTT-TATT-TTG----TTTTACACTTTAAAGCAAC-----AT---------------ACTG-------TCAG-----AAAAT--GACAAAGCCGAGAA-------------AAGGAGA-TGGTACCCACAGGCGTTT-GCT--TAATATTTCT-Ccataattgattttaa
gi|10 : TTCAGTATA----TATTTAGTTTATTTTATC--AAACAATACACTGCCG-A----ATTCGG--------GGGATCGAGGGGTTGGTGGGGCAGAAAAC-GACAAAGCTGGGAAAGGGGGGGGGGGTACGGGGA--GGTACCCACAGGTGTTT-GGT--GAATGTTTTT-CTTCATAAGTTATcgattttaagatacatttgcattgcgtttatataacgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|2 : TTGCAACATGGTGGCAAA----A-------------AGGAG---GGGGTTGGGG----CAGATATTGACAAAGCCGGGAA-------------AGGAGGGGTGACACCCACAGACGCTT-GCTTTAAACATTTTTTCATGATATATCGTTGTGATTATAAACTA----------CAT-GTA----CAT--------ACA--GTAC----ACTGTATCA---ACTT--ATGAAGTATCGGAATA------T-GAAACGATAGA---TTCTGAGCATG-TTTTCT-----------TG--AT-TTCTCTG----------CT---TCCG-----TTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTG--GA-ATAT---TA--CTT-C-AT--ATATGTACA-----AATAC-T----TTATATTTTGTTT-------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTGA-AT-------------AATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATaggcataacttcttt
gi|5 : AAAAAAAAAACTAAACAT-GCATACATATAGAAAACGATAAAGCAACACAAATACAT-ATGTATTTGTATGAAGTAC------AAGTATGT-GAAGTGGTTGG---TTCAGATCAGG-GCTTCT-----------CG--TT-CTCTCTGTAA----TTTATGCTTCCC-----CTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC---------A---CA--CT--C-ATTGGTAC----------AATA----------TAC--------------TCCGTTCCGGGTTTTAGCAACA-CCCgttcgacagtattagtacttcagcag
gi|7 : ATT---CATAATAAGT-TAAA----ACAGCT--TTCA----AATGTAT-ATGCATTGATATGAAGTAT------A------TGAAAAT--TGGA---TTGTGAGatc
gi|8 : cagtgtatttattttattttattgtgaaacaacatattgtcactatcggtagaaaaggggagggggagaaaacgataaagtcggtaaaagggtgtggtacccacgggagcttgcttaatatgATATTT-ATGCATTATTATGAAGTGT------A------T-GAAACAATGCC---CCCC--------CCCTCCACACACACACACGGCTCACTCTCTGTAA----TT-CT---TTTC-----TTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCCC--CCTATAA---CA--TTA-T------TGCATA-C-----AATATAT----TTC------ATTT-------TCCGTTCCGCGTTTTCGAAACG-CCCC---T-TCCA--AACCTga
gi|3 : -ATACATTTGCATTGCGTTT------A------T-ATAACGTTGGA---TTCTGGAGATG-ACTTCC-----------CC--TT-CTCTCTGTAA----TGTCTACATTTA-----TTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCTTC--AA---AA---TA--T---------------------------T-T----TTCTGTTCCGTTT-------TCTGATCCGCGTTTTAGTA
gi|9 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctccgattttaagTTGTATTAATGAT------G------A-AAAGTGTTGGACAATTTT---CATGGTCTTCC-----------CG--AT-CTCTCTGTG-------------TCCG-----TTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGA
gi|11 : tacaaatacatgtataaagttcgatatccagtacgttggatttaaaaaggAT------A------T-GAAACGCTGGA---TTTTGAG---G-ACTTCC-----------CT--TT-CTCTCTGTAA----AATTTGTCTCTC-----TTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTCA--GA-A-AA---TAGTTTC-CGAT---TCCAT------------T-CCGCGTTCCGTTCTG-TT-------TCCGTTCCGTATTTTGGCAAaactagttcaaattgtaaaacgctagatttcgttt
gi|19 : GA---TTTTGAGGATT-AATTCC-----------C---TT-TTTTCTGTAA----TCTTTGCTTCCC-----AT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAAT
gi|12 : CTGAGGATG-ACTCCC-----------CG--TA-CCCTCTGTAA----TTTATGCTTCCC-----TTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGA---CCTCC--CA-ATAA---CA--T------T--GTACATA-ACATTCAATAT-T----TTCCGTTTTTTGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CCct
gi|6 : TCC-----------CT--TT-CTCTCTGTAA----TTTCTG-CTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTC------ATAAGGGTT--TTC-C----------------------GT-T----TTCCGTTTCGTCT-------TCCATTCCACGTTTTAGCAACA-C
gi|18 : catacattcgtatgcattatatgttttatttcaaacggtgactctgattctggggggtgggggtgggCTCTGTGAAAGATTTTTGTTTTCC-----TTTTAC---AT---AA-----GCA-TTTAATTTTACAGAATACTGACTTCCTC------ATAAGTTCA--TTG-C-AT--G
gi|20 : A-----GCCGTTTAATTTTACAAAATGCAAATCTCCTT------ATAA---CA--TTA-
gi|17 : gctctcattgttctataaatacatgttTGATTTCACAAA----TGATCGCCTCCTCAA-AAAA---TA--TTATC-AC--GTCCA----------ATGC-A----TTCCGTTCCGTTT-------TCCATCCCGCATTTTAGGAACA-C
gi|13 : -AT--ATACATG-A-----AATAG-T----TTCAGTTCCGTTT-------TACAT-----GT---AGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATTT--GTATAAA-ATGGTACTACATG
gi|22 : attTAT-T----TTTCGTTCCGTTTCATGT--TCTGTTCCGCGTTTTAGCAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GAGACGACATACTGTCACTACCGGAGGAGGGAATAGGAAATGATGAAGTCGGTAAAAGCGGGTGTTACCCACAGGCGCTTCCTTACAATGATTCATAATAGCTTTAATGAATTTTCAAA
Unaligned ( gi|15 ): GTAAAAGGGGGCGGTATCCGTGCATGCACTTGCTTAATAGGATTCATAATGTGTTAAAATCGCTTTCAAGTATACACTTATATGTGGTGGCATTGAGCTTACGAAAAGTCTGATACTG
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA
Unaligned ( gi|21 ): ATACCATTAGTGCATACAATATTTTCCATTTTCCGCTCCGTTTTTCG
Alignments
lowQualScore : 111111111111111111111111111111111 1111111111111111111111111111111111111111111 1111111111111111111
lowQualScore : 1 55555 1 22222222222222 22 333333333333333333333333333333333 11111 333333333333 2222222 2 1111 3333333333333333 99999999999999999999999999999999999999999999999999999 222222 1111111 111 2222222222222222222 1111111111111111111111111111111111111111111 111111111111111111111111 11111 1111111 11111111 111 6666666666666666666666666666666666666666 111111111111111 11 11 1111111111111111111 1 22 2
lowQualScore : 3 2 2 2 4 4 4 4 77 5 4 00000 5 4 99999999999999 22 44 22 777777777777777777777777777777777 1 1 1 1 77777 555555555555 1111111 0 0 2 7777 0 99 8 1 3 5555555555555555 1 2 11111111111111111111111111111111111111111111111111111 000000 5 8888888 5 000 5 77 22 2222222222222222222 22 3 6666666666666666666666666666666666666666666 1 888888888888888888888888 777 1 00000 777 4 3333333 55 3 22222222 7777 999 6666 88888 66 0 1 0000000000000000000000000000000000000000 2 666666666666666 77 0 1 88 11 2222222222222222222 4 11 0 3 0 4
lowQualScore : . . . . . . . . .. . . ..... . . .............. .. .. .. ................................. . . . . ..... ............ ....... . . . .... . .. . . . ................ . . ..................................................... ...... . ....... . ... . .. .. ................... .. . ........................................... . ........................ ... . ..... ... . ....... .. . ........ .... ... .... ..... .. . . ........................................ . ............... .. . . .. .. ................... . .. . . . .
lowQualScore : 0 5 5 5 0 0 0 0 00 5 0 00000 5 0 00000000000000 00 33 00 000000000000000000000000000000000 0 0 0 0 33333 000000000000 3333333 7 0 5 0000 8 00 0 0 2 1111111111111111 0 7 99999999999999999999999999999999999999999999999999999 999999 7 6666666 7 999 7 99 77 1111111111111111111 00 2 2222222222222222222222222222222222222222222 4 999999999999999999999999 000 0 00000 888 9 0000000 44 9 33333333 7777 111 9999 33333 44 6 2 6666666666666666666666666666666666666666 4 888888888888888 00 7 0 33 00 7777777777777777777 0 77 7 3 7 0
consensus : NATCATCCTAGAGATACGAAGTTCGGTCAANANCAAGNTCGANTTANAAAGGCTATGTTTGGGGANAANNGTTGAGAAAATNATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATT-G---A-AT-GTCNATT---GA-TTN----G-GTGGNAGCCAGTAAG-AGT-ATAAAGCTTTGAA-GGATAAATTAT-ACT-AAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACA----ATC---------GGGGGA--G-GGGGNTG------CGG-A-AA-ATCGACAAAGCCGGGAAA-----AG-GGGGT-------GGCACCCACAGGCGCTTG-CT--NAATATTTTT-C--ATNATAAG-----TT---ATTGCGATTATAAANNAAAAAACT---CAT-G--TAN-CTATA----ACGATA--GTAA----AATATATATGCATTTGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA---TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATG-------------AAAT-GTATTC-TATATAAA-ATGGTACTACATGNTTTTTCCAT
Reference ( family-4860 ) : NATTATCTTAAAGATACTAAATTCGATTAACAGCAAAATCGATTTATAAAGGCTATGTTTGGGGATAATTGTTGAGAAAATTATT-----GTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGGGTTGTGNGGNNAAAACCATCTNNTTCATTNGTTTACAT-GTCCATTCAAGANTTNCCCAGTGTGGNANCCAGNANGNAGTTATAAAACTTTAAGNGAATAAATTATCACTCAAATCCTTTT-AGTATA----TATTTN-TTT-TTTTGT---CT-T-T---A---CAACATANTGCCACA----ATT---------GGGGGANCG-GGGGTTN------CGG-A-AA-ANCGACAAAGCCGGGAAA-----NG-GGGAT-------GGCACCCACAGGCGCTTG-CT--GAATATTTTT-C--ATNATAAG-----TT---ATTGTGATTATAAANNAAAAAACT---CAT-G--TAG-CTATA----ACGACA--GTAA----AATGTATATGCATTTGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA---TTCTGAGNA-------TGN-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACG-CCCCAAGTATNTA--AACTTGCTGCATATCTTANTGATANTACCTCCCCAAATNGTATTCCTGTATAAAGATGGTGCTACATGTTTTTTTCAT
gi|1 : ATCATCCTAGAAATATGAAGTTTTGTCAAAATCAAGTTCGAATTAAAAAGGCTATGTTTAGGGAAAAAGGT-GAAAAAATAATTTTCATATTTTTCAA-TGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCAT------AGATCGTTAATT------TTG------GTGGCAGCCAGTAAAAAGTGATAA---TTTGAACGGATAAATTATAATTGAAATCTTTTTCAGTATACAGGTATTTG-TTT-TTGTGT---CT-T-TT--A---CAATATAATGCCACA----AT------------GGGAGTG-GAGGTTT------CTG-A-AA-AAAGACAAAATCGGGAAA-----CG-AGAAT-------AGCATCCATAGTCGCTTC-CT--GAATATTTAT-C--ATGATAAA-----TT---ATGATGACAGTAAAAAAAAAAATT---CATAG--TAAACTATG----ACGATA--GTAA----AATATATATGTATTTGTATGAAGTAT------A------TA---------AAA--TGATG-----GA---TCCTGAGCA-------TGC-CTTCCCGTTCTCTCTGTAA----TTTCTGTCTCC----CTTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTC-CGA--ATAA---TA--TTA-C----AT--GT-ACATAAAATATTTTCTGCTCTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATG-------------AAAT-GTATTC--ATATGAA-ATGGTACTATATGATTTTTCCAT
gi|10 : aTTC-AGTATA----TATTTAGTTTATTTTAT---CA-A-----A---CAATACACTGCCG-A----ATTC--------GGGGGATCGAGGGGTTGGTGGGGCAG-A-AA-A-CGACAAAGCTGGGAAAGGGGGGG-GGGGTACGGGGAGGTACCCACAGGTGTTTG-GT--GAATGTTTTT-C--TTCATAAG-----TT---ATaattggaataatatgggactcacagcgg
gi|11 : AT------A------TG---------AAA--CGCTG-----GA---TTTTGAG----------GA-CTTCCCTTTCTCTCTGTAA----AATTTGTCTCT----CTTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTC-A-G--AAAA---TAG-TTT-CCG--AT---T-CCAT--TCCGCGTTCCGTTCTG-T-----T---------TCCGTTCCGTATTTTGGCAAaggcataacttcttt
gi|12 : CTGAGGA-------TGA-CTCCCCGTACCCTCTGTAA----TTTATGCTTCC----CTTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGACCTC--C-C-A--ATAA---CA--TTG-T----AC--ATAACATTCAATATTTTCCGTTT--TT-----TGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CC
gi|13 : ----AT--AT-ACATGAAATAGTTTCAGTTCCGTT-----T---------TACAT---G-----TAGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATT--TGTATAAA-ATGGTACTACATG
gi|14 : att---A---CGACATACTGTCACT----ACC---------GGAGGA----GGGAATA-------GG-A-AA---TGATGAAGTCGGTAAA-----AG-CGGGT-------GTTACCCACAGGCGCTTC-CT--TACAATGATT-C--ATAATA
gi|17 : gagTGATTTCACAAA-TGATCGCCTCCTC-A-A--AAAA---TA--TTATC----AC--GT-CCA----ATGCATTCCGTTCCGTT-----T---------TCCATCCCGCATTTTAGGAACA-Cgctttaatgaattttcaaa
gi|18 : CTCTGTGAAAGATTTTTGTTTTC----CTTTTAC---AT---AA-----GC-ATTTAATTTTACAGAATACTGACTTCCTC------ATAAGTTCA--TTG-C----AT--G
gi|19 : -----GA---TTTTGAGGA-------TTA-ATTCCC-TTTTTTCTGTAA----TCTTTGCTTCC----CAT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAAT
gi|2 : -T-T---G---CAACATGGTGGCAAA----A-------------AGGA--G-GGGGTTG------GGGCA-GATATTGACAAAGCCGGGAAA-----GGAGGGGT-------GACACCCACAGACGCTTG-CTTTAAACATTTTTTC--ATGATATA-----TC---GTTGTGATTATAAACTA----------CAT-G--TA---CATA--------CA--GTAC----ACTGTAT---CAACT-TATGAAGTATCGGAATA------TG---------AAA--CGATA-----GA---TTCTGAGCA-------TGT-TTTCTTGATTTCTCTG-------------CTTCC----GTTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTGG-A--ATAT---TA--CTT-CATATAT--GT-ACA---AATACTTTATATTTTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTG--------------AATAATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATct
gi|20 : A-----GCCGTTTAATTTTACAAAATGCAAATCTCCTT------ATAA---CA--TTgttcgacagtattagtacttcagcag
gi|22 : gctctcattgttctataaatacatgttTATTTTTCGTTCCGTTTCATGT---------TCTGTTCCGCGTTTTAGCAAa
gi|3 : ----GGGGTTGTGTGGATAAAACT-TCTTATTCATTGG---ATAT-GTCCATTCAAAATTTACCCAA-GTGGTATCCAAGATGCAGTTATAAAACTTTAAAGGAATAAATTATCACTCAAATCCTTTTAAGTACA----T-TTTA-TTT-TGTTTTACACT-T-T---AAAGCAACATACTGTCA-------------------------------------------G-A-AA-AT-GACAAAGCCGAGAAA-----AG-GAGAT-------GGTACCCACAGGCGTTTG-CT--TAATATTTCT-CCGATTTTAAGATACATTTGCATTGCGTTTATA
gi|3 : ATACATTTGCATTGCGTTT------A------TA---------TAA--CGTTG-----GA---TTCTGGAGA-------TGA-CTTCCCCTTCTCTCTGTAA----TGTCTACATTT----ATTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCTT-C-A--A-AA---TA--T-------------------------TTTTCTGTTCCGTT-----T---------TCTGATCCGCGTTTTAGTAtaacgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|4 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctccgattttaagATTATCTTAAAGATACTAAATTCGATTAACAGCAAAATCGATTTATAAAGGCTATGTTTGGGGATAATTGTTGAGAAAATTATT-----GTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGG-------GATAAAAACCATTTATTTCATT-GTTTA------CTATT---GAGTTC----GTATGGGAGCCAGTAAG-------AAAGC-------------ATT-------AAATCTGTGT-A-TGTT----TACTTA-TTT-ATTTGT---TTAT-T---A---CAACATACTGTCACATTCGATTGGAGAAAGAGGGGGGGGG-GGGGGGT------CAG-A-AA-AT-GACAAATCCGAGAAA--------GAGAT-------GACACCCTCAAAAGCTTGTTT--GAATATTTTT-A--ATAATAAG-----TT---A
gi|5 : AAAAAAAAAACTAAACAT-GCATAC-ATATAGAAAACGATAAAGCAACACAAATACATATGTATTTGTATGAAGTAC------AAGTATGTG---------AAG--TGGTT-----GG---TTCAGATCA-------GGG-CTTCTCGTTCTCTCTGTAA----TTTATGCTTCC----CCTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC---------A---CA--CT--C----ATTGGT-AC----AATATACTCCGTTCCG--------------------G------GTTTTAGCAACA-CCCcataattgattttaa
gi|6 : ATACATTCGTATGCATTAT------A------TGTTTTATTTCAAA--CGGTGACTCTGA---TTCTGGGGGGTGGGGGTGG-GT-CCCTTTCTCTCTGTAA----TTTCTGCTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTC------ATAA---GGGTTTT-C-------------------CGTTTTCCGTTTCGTC-----T---------TCCATTCCACGTTTTAGCAACA-Catc
gi|7 : cTG----TATTTA-TTT-TATTTT---AT-TGTGAAA---CAACATATTGTCACT----ATC---------GGTAGAAAA-GGGGAGG------GGG-AGAA-AACGATAAAGTCGGTAAA-----AG-GGTGT-------GGTACCCACGGGAGCTTG-CT--TAATATGATT-C--ATA------------------------ATAAGTTAAAA--------------CAG-CT-T--------------TCA----AATGTATATGCATTGATATGAAGTAT------A------TG---------AAA---ATTG-----GA---TTGTGAGGA-------
gi|8 : cagATATTTATGCATTATTATGAAGTGT------A------TG---------AAA--CAATG-----
gi|8 : CTCTCTGTAA----TT----CTTTT----CTTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCC-C-CCTATAA---CA--TTA-T-----T--GC-ATAC--AATAT-----ATTTCATT-----T---------TCCGTTCCGCGTTTTCGAAACG-CCCCccccccccctccacacacacacacggctcactctctgtaattcttttcttattcacagtacaaaatgctgccccccccccctataacattattgcatacaatatatttcattttccgttccgcgttttcgaaacgccccttccaaacct
gi|9 : atatttatgcattattatgaagtgtatgaaacaatgccccccccctccacacacacacacggctcaTTGTATTAA-TG-------A------TG---------AAAAGTGTTG-----GACAATTTT---CA-------TGGTCTTCCCGATCTCTCTGTG-------------TCC----GTTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGAttccaaacct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTAAAAGGGGGCGGTATCCGTGCATGCACTTGCTTAATAGGATTCATAATGTGTTAAAATCGCTTTCAAGTATACACTTATATGTGGTGGCATTGAGCTTACGAAAAGTCTGATACTG
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA
Unaligned ( gi|21 ): ATACCATTAGTGCATACAATATTTTCCATTTTCCGCTCCGTTTTTCG
Alignments
lowQualScore : 222 11 11 1 2222 11111 1 88888888888888888888888888888 999999999999999999999999999999999999999 2 1111 3333333333333333 999999999999999999999999999999999999999999999999999999 22 2222222222222 11111 111 4444444444444444444444444444444 11 1111 222222222222222222222222 11111 11111 11111111111 11111111 111 6666666666666666666666666666666666666666 111111111111111 11 11 11 7777777777777777 222 1
lowQualScore : 44 0 333 1 77 1 1 1 88 1 22 7 11 1 7 5 1 8888 66666 3 77777777777777777777777777777 1 999999999999999999999999999999999999999 0 2 7777 0 8 8 1 1 5555555555555555 444444444444444444444444444444444444444444444444444444 5 5 66 3 5 1111111111111 66 5 777 0 5 66 1 44444 000 0 22 7777777777777777777777777777777 33 7777 1 777 2 222222222222222222222222 777 1 00000 11111 55555555555 3 22222222 7777 999 6666 88888 66 0 1 0000000000000000000000000000000000000000 2 666666666666666 5 1 88 11 88 7777777777777777 777 3 1
lowQualScore : .. . ... . .. . . . .. . .. . .. . . . . .... ..... . ............................. . ....................................... . . .... . . . . . ................ ...................................................... . . .. . . ............. .. . ... . . .. . ..... ... . .. ............................... .. .... . ... . ........................ ... . ..... ..... ........... . ........ .... ... .... ..... .. . . ........................................ . ............... . . .. .. .. ................ ... . .
lowQualScore : 33 7 333 0 77 0 0 0 33 0 00 3 00 0 3 5 0 3333 33333 3 00000000000000000000000000000 0 333333333333333333333333333333333333333 0 5 0000 8 0 0 0 0 1111111111111111 777777777777777777777777777777777777777777777777777777 7 7 00 9 0 6666666666666 99 0 999 8 0 99 0 33333 000 7 00 0000000000000000000000000000000 88 0000 7 444 5 777777777777777777777777 000 0 00000 11111 88888888888 9 33333333 7777 111 9999 33333 44 6 2 6666666666666666666666666666666666666666 4 888888888888888 0 0 33 00 33 3333333333333333 333 3 0
consensus : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTGG---CGT-CNATT---GA-TT-----CG-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-ANTC-AAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAG-AAA-AT-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCC--ACAGGCGCTTG-CTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACT---CAT-G--TAC--TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
Reference ( family-4860 ) : NATCATCCTAGAGATACGAAGTTCGGT---CAANANCAAGNTCGANTTANAAAGGCTATGTT--TGGGGANAANNGTTGAGAAAATNATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTGA--ATGT-CNATT---GA-TT-----NG-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-ACT--AAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGNTG------CGG-AAA-ATCGACAAAGCCGGGAAAAG-GGGG-----T-------GGCACCC--ACAGGCGCTTG-CTN--AATATTTTT-C--ATNATAAG-----TT---ATTGCGATTATAAANNAAAAAACT---CAT-G--TAN-CTATA----ACGATA--GTAA----AATATATATGCATT-TGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
gi|1 : ATCATCCTAGAAATATGAAGTTTTGT---CAAAATCAAGTTCGAATTAAAAAGGCTATGTT--TAGGGAAAAAGGT-GAAAAAATAATTTTCATATTTTTCAA-TGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCATAGA--TCGT-TAATT-------T-----TG-GTGGCAGCCAGTAAA-AAG-TGATAA---TTTGAACGG-ATAAATTAT-AATTGAAATCTTTTTCAGTATACAGGTATTTG-TTT-TTGTGT---CT-T-TT--A---CAATATAATGCCACAAT-----------------GG--------GAGT---GGAGGTTT------CTG-AAA-AAAGACAAAATCGGGAAACG-AGAA-----T-------AGCATCC--ATAGTCGCTTC-CTG--AATATTTAT-C--ATGATAAA-----TT---ATGATGACAGTAAAAAAAAAAATT---CATAG--TAAACTATG----ACGATA--GTAA----AATATATATGTATT-TGTATGAAGTAT------A------TA---------AAA--TGATG-----GA-----TCCTGAGCA-------TGC-CTTCCCGTTCTCTCTGTAA----TTTCTGTCTCC----CTTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTC-CGA--ATAA---TA--TTA-C----AT--GT-ACATAAAATATTTTCTGCTCTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATGA-AA-------------TGTATT-C-ATATGAA-ATGGTACTATATGATTTTTCCAT
gi|10 : aTTC-AGTATA----TATTTAGTTTATTTTAT---CA-A-----A---CAATACACTGCCGAATTC----------------GG--------GGGATCGAGGGGTTGGTGGGGCAG-AAA-A-CGACAAAGCTGGGAAAGG-GGGGGGGGGTACGGGGAGGTACCC--ACAGGTGTTTG-GTG--AATGTTTTT-C--TTCATAAG-----TT---ATaattggaataatatgggactcacagcgg
gi|11 : AT------A------TG---------AAA--CGCTG-----GA-----TTTTGAGGA-----------CTTCCCTTTCTCTCTGTAA----AATTTGTCTCT----CTTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTC-A-G--AAAA---TAG-TTT-CCG--AT---T-CCAT--TCCGCGTTCCGTTCTG-T-----T---------TCCGTTCCGTATTTTGGCAAaggcataacttcttt
gi|12 : CTGAGGA-------TGA-CTCCCCGTACCCTCTGTAA----TTTATGCTTCC----CTTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGACCTC--C-C-A--ATAA---CA--TTG-T----AC--ATAACATTCAATATTTTCCGTTT--TT-----TGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CC
gi|13 : ----AT--AT-ACATGAAATAGTTTCAGTTCCGTT-----T---------TACAT---G-----TAGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATT--TGTATAAA-ATGGTACTACATG
gi|14 : att---A---CGACATACTGTCACTACC----------------GG--------AGGA---GGGAAT---------AG-GAA-AT-GATGAAGTCGGTAAAAG-CGGG-----T-------GTTACCC--ACAGGCGCTTC-CTT--ACAATGATT-C--ATAATA
gi|15 : gagAAAAG-GGGG-----C-------GGTATCCGTGCATGCACTTG-CTT--AATAGGATT-C--ATAATGTG-----TT---Agctttaatgaattttcaaa
gi|17 : gtTGATTTCACAAA-TGATCGCCTCCTC-A-A--AAAA---TA--TTATC----AC--GT-CCA----ATGCATTCCGTTCCGTT-----T---------TCCATCCCGCATTTTAGGAACA-Caaatcgctttcaagtatacacttatatgtggtggcattgagcttacgaaaagtctgatactg
gi|18 : CTCTGTGAAAGATTTTTGTTTTC----CTTTTAC---AT---AA-----GC-ATTTAATTTTACAGAATACTGACTTCCTC------ATAAGTTCA--TTG-C----AT--G
gi|19 : -----GA-----TTTTGAGGA-------TTA-ATTCCC-TTTTTTCTGTAA----TCTTTGCTTCC----CAT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAAT
gi|2 : -T-T---G---CAACATGGTGGCAAAA----------------------------AGGA---GGGGGTTG------GGGCAGATATTGACAAAGCCGGGAAAGGAGGGG-----T-------GACACCC--ACAGACGCTTG-CTTTAAACATTTTTTC--ATGATATA-----TC---GTTGTGATTATAAACTA----------CAT-G--TAC---ATA--------CA--GTAC----ACTGTAT---CAAC-T-TATGAAGTATCGGAATA------TG---------AAA--CGATA-----GA-----TTCTGAGCA-------TGT-TTTCTTGATTTCTCTG-------------CTTCC----GTTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTGG-A--ATAT---TA--CTT-CATATAT--GT-ACA---AATACTTTATATTTTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTGA-AT-------------AATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATct
gi|20 : A-----GCCGTTTAATTTTACAAAATGCAAATCTCCTT------ATAA---CA--TTgttcgacagtattagtacttcagcag
gi|22 : gctctcattgttctataaatacatgttTATTTTTCGTTCCGTTTCATGT---------TCTGTTCCGCGTTTTAGCAAa
gi|3 : ----GGGGTTGTGTGGATAAAACT-TCTTATTCATTGGATATGT-CCATTCAAAA-TTTACCCAA-GTGGTATCCAAGATGCA-GTT-ATAAAACTTTAAA-GGAATAAATTATCACTC-AAATCCTTTTAAGTACA----T-TTTA-TTT-TGTTTTACACT-T-T---AAAGCAACATACTGTCA------------------------------------------------------G-AAA-AT-GACAAAGCCGAGAAAAG-GAGA-----T-------GGTACCC--ACAGGCGTTTG-CTT--AATATTTCT-CCGATTTTAAGATACATTTGCATTGCGTTTATA
gi|3 : CGATT--TTAA----GATACATTTGCATTGCGT-T----TAT------A------T-----------AA--CGTTG-----GA-----TTCTGGAGA-------TGA-CTTCCCCTTCTCTCTGTAA----TGTCTACATTT----ATTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCTT-C-A--A-AA---TA--T-------------------------TTTTCTGTTCCGTT-----T---------TCTGATCCGCGTTTTAGTAtaacgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|4 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctcATTATCTTAAAGATACTAAATTCGAT---TAACAGCAAAATCGATTTATAAAGGCTATGTT--TGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGG-------GATAAAAACCATTTATTTCATTG----TTTACTATT---GAGTT-----CGTATGGGAGCCAGTAAG---------AAAGC--------------------ATT--AAATCTGTGT-A-TGTT----TACTTA-TTT-ATTTGT---TTAT-T---A---CAACATACTGTCACATTCGATTGGAGAAAGAGGGGG--------GGGG---GGGGGGT-------CAG-AAA-AT-GACAAATCCGAGAAA---GAGA-----T-------GACACCC--TCAAAAGCTTGTTTG--AATATTTTT-A--ATAATAAG-----TT---A
gi|5 : AAAAAAAAAACTAAACAT-GCATAC-ATATAGAAAACGATAAAGCAACACAAATACATATGTATT-TGTATGAAGTAC------AAGTATGTG---------AAG--TGGTT-----GG-----TTCAGATCA-------GGG-CTTCTCGTTCTCTCTGTAA----TTTATGCTTCC----CCTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC---------A---CA--CT--C----ATTGGT-AC----AATATACTCCGTTCCG--------------------G------GTTTTAGCAACA-CCCcataattgattttaa
gi|6 : ATACATT-CGTATGCATTAT------A------TGTTTTATTTCAAA--CGGTGACTCTGA-----TTCTGGGGGGTGGGGGTGG-GT-CCCTTTCTCTCTGTAA----TTTCTGCTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTC------ATAA---GGGTTTT-C-------------------CGTTTTCCGTTTCGTC-----T---------TCCATTCCACGTTTTAGCAACA-Catc
gi|7 : cTG----TATTTA-TTT-TATTTT---AT-TGTGAAA---CAACATATTGTCACTATC----------------GGTAGAAAAGGGGA---GGGGGA----------G-AAA-A-CGATAAAGTCGGTAAAAG-GGTG-----T-------GGTACCC--ACGGGAGCTTG-CTT--AATATGATT-C--ATAATAAG-----TT---A
gi|7 : cagA----AATGTATATGCATT-GATATGAAGTAT------A------TG---------AAA---ATTG-----GA-----TTGTGAGGA-------aaacagctttcaaatgtatatgcattgatatgaagtatatgaaaattggattgtgagga
gi|8 : cagtgtatttattttattttattgtgaaacaacatattgtcactatcggtagaaaaggggagggggagaaaacgataaagtcggtaaaagggtgtggtacccacgggagcttgcttaatatgattcataataagttaaaacagctttcATATTTATGCATT-ATTATGAAGTGT------A------TG---------AAA--CAATG-----
gi|8 : CTCTCTGTAA----TT----CTTTT----CTTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCC-C-CCTATAA---CA--TTA-T-----T--GC-ATAC--AATAT-----ATTTCATT-----T---------TCCGTTCCGCGTTTTCGAAACG-CCCCccccccccctccacacacacacacggctcactctctgtaattcttttcttattcacagtacaaaatgctgccccccccccctataacattattgcatacaatatatttcattttccgttccgcgttttcgaaacgccccttccaaacct
gi|9 : atatttatgcattattatgaagtgtatgaaacaatgccccccccctccacacacacacacggctcaTATAAAGTTCGATATCCAGTAC---GTTGGATTTAAAAAGGTTGTATTAATGATGAAAAGTGTTG----GACAATTTTCATGGTCTTCttccaaacct
gi|9 : tacaaatacatgT-TGTATTAA-TG-------A------TG---------AAAAGTGTTG-----GACAATTTTC-----A-------TGGTCTTCCCGATCTCTCTGTG-------------TCC----GTTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGAccgatctctctgtgtccgttgttcattagctgtttgattttacaaagtgctgaaactagttcaaattgtaaaacgctagatttcgttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA
Unaligned ( gi|21 ): ATACCATTAGTGCATACAATATTTTCCATTTTCCGCTCCGTTTTTCG
Alignments
lowQualScore : 222 11 11 1 2222 11111 1 8888888888888888888888888888 888888888888888888888888888888888888888 2 1111 3333333333333333 88888888888888888888888888888888888888888888888888888888 2222222222222 11 11111 111 5555555555555555555555555 11 1111 222222222222222222222222 11111 11111 11111111111 11111111 111 6666666666666666666666666666666666666666 111111111111111 11 11 11 7777777777777777 222 1
lowQualScore : 1 333 1 77 88 1 7 11 7 5 1 8888 66666 3 8888888888888888888888888888 1 777777777777777777777777777777777777777 0 2 7777 0 8 8 1 1 5555555555555555 5 66666666666666666666666666666666666666666666666666666666 2 3 5 1111111111111 66 11 0 5 66 1 44444 000 0 3 5555555555555555555555555 33 7777 1 77 222222222222222222222222 777 1 00000 11111 55555555555 3 22222222 7777 999 6666 88888 66 0 1 0000000000000000000000000000000000000000 2 666666666666666 5 1 88 11 88 7777777777777777 777 3 1
lowQualScore : . ... . .. .. . . .. . . . .... ..... . ............................ . ....................................... . . .... . . . . . ................ . ........................................................ . . . ............. .. .. . . .. . ..... ... . . ......................... .. .... . .. ........................ ... . ..... ..... ........... . ........ .... ... .... ..... .. . . ........................................ . ............... . . .. .. .. ................ ... . .
lowQualScore : 0 333 0 77 33 0 3 00 3 5 0 3333 33333 3 7777777777777777777777777777 0 000000000000000000000000000000000000000 0 5 0000 8 0 0 0 0 1111111111111111 7 44444444444444444444444444444444444444444444444444444444 3 9 0 6666666666666 99 99 8 0 99 0 33333 000 7 2 0000000000000000000000000 88 0000 7 44 777777777777777777777777 000 0 00000 11111 88888888888 9 33333333 7777 111 9999 33333 44 6 2 6666666666666666666666666666666666666666 4 888888888888888 0 0 33 00 33 3333333333333333 333 3 0
consensus : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTGN---CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A-TC-AAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------C---AGAAAACGACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
Reference ( family-4860 ) : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTGG---CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-ANTC-AAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------C---AGAAAATGACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACT---CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
gi|1 : ATCATCCTAGAAATATGAAGTTTTGT---CAAAATCAAGTTCGAATTAAAAAGGCTATGTT--TAGGGAAAAAGGT-GAAAAAATAATTTTCATATTTTTCAA-TGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCATAGAT--CGTTAATT-------TT-----G-GTGGCAGCCAGTAAA-AAG-TGATAA---TTTGAACGG-ATAAATTAT-AATTGAAATCTTTTTCAGTATACAGGTATTTG-TTT-TTGTGT---CT-T-TT--A---CAATATAATGCCACAAT-----------------GG--------GAGT---GGAGGTT-------TCTGAAAAAA-GACAAAATCGGGAAACG-AGAA-----T-------AGCATCCA--TAGTCGCTTCCTG--AATATTTAT-C--ATGATAAA-----TT---ATGATGACAGTAAAAAAAAAAATT---CATAG--TAAAC-TATG----ACGATA--GTAA----AATATATATGTATT-TGTATGAAGTAT------A------TA---------AAA--TGATG-----GA-----TCCTGAGCA-------TGC-CTTCCCGTTCTCTCTGTAA----TTTCTGTCTCC----CTTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTC-CGA--ATAA---TA--TTA-C----AT--GT-ACATAAAATATTTTCTGCTCTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATGA-AA-------------TGTATT-C-ATATGAA-ATGGTACTATATGATTTTTCCAT
gi|10 : aTTC-AGTATA----TATTTAGTTTATTTTAT---CA-A-----A---CAATACACTGCCGAATTC----------------GG--------GGGATCGAGGGGTTGGTGGGGC---AGAAAACGACAAAGCTGGGAAAGG-GGGGGGGGGTACGGGGAGGTACCCA--CAGGTGTTTGGTG--AATGTTTTT-C--TTCATAAG-----TT---ATaattggaataatatgggactcacagcgg
gi|11 : AT------A------TG---------AAA--CGCTG-----GA-----TTTTGAGGA-----------CTTCCCTTTCTCTCTGTAA----AATTTGTCTCT----CTTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTC-A-G--AAAA---TAG-TTT-CCG--AT---T-CCAT--TCCGCGTTCCGTTCTG-T-----T---------TCCGTTCCGTATTTTGGCAAaggcataacttcttt
gi|12 : CTGAGGA-------TGA-CTCCCCGTACCCTCTGTAA----TTTATGCTTCC----CTTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGACCTC--C-C-A--ATAA---CA--TTG-T----AC--ATAACATTCAATATTTTCCGTTT--TT-----TGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CC
gi|13 : ----AT--AT-ACATGAAATAGTTTCAGTTCCGTT-----T---------TACAT---G-----TAGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATT--TGTATAAA-ATGGTACTACATG
gi|14 : att---A---CGACATACTGTCACTACC----------------GG--------AGGA---GGGAAT------------AGGAAATGATGAAGTCGGTAAAAG-CGGG-----T-------GTTACCCA--CAGGCGCTTCCTT--ACAATGATT-C--ATAATA
gi|15 : gagAAAAG-GGGG-----C-------GGTATCCGTGCATGCACTTGCTT--AATAGGATT-C--ATAATGTG-----TT---Agctttaatgaattttcaaa
gi|17 : gtTGATTTCACAAA-TGATCGCCTCCTC-A-A--AAAA---TA--TTATC----AC--GT-CCA----ATGCATTCCGTTCCGTT-----T---------TCCATCCCGCATTTTAGGAACA-Caaatcgctttcaagtatacacttatatgtggtggcattgagcttacgaaaagtctgatactg
gi|18 : CTCTGTGAAAGATTTTTGTTTTC----CTTTTAC---AT---AA-----GC-ATTTAATTTTACAGAATACTGACTTCCTC------ATAAGTTCA--TTG-C----AT--G
gi|19 : -----GA-----TTTTGAGGA-------TTA-ATTCCC-TTTTTTCTGTAA----TCTTTGCTTCC----CAT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAAT
gi|2 : -T-T---G---CAACATGGTGGCAAAA----------------------------AGGA---GGGGGTTGGGG---C---AGATATTGACAAAGCCGGGAAAGGAGGGG-----T-------GACACCCA--CAGACGCTTGCTTTAAACATTTTTTC--ATGATATA-----TC---GTTGTGATTATAAA--------CTA--CAT-G--TA--C--ATA--------CA--GTAC----ACTGTAT---CAA--CTTATGAAGTATCGGAATA------TG---------AAA--CGATA-----GA-----TTCTGAGCA-------TGT-TTTCTTGATTTCTCTG-------------CTTCC----GTTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTGG-A--ATAT---TA--CTT-CATATAT--GT-ACA---AATACTTTATATTTTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTGA-AT-------------AATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATct
gi|20 : A-----GCCGTTTAATTTTACAAAATGCAAATCTCCTT------ATAA---CA--TTgttcgacagtattagtacttcagcag
gi|22 : gctctcattgttctataaatacatgttTATTTTTCGTTCCGTTTCATGT---------TCTGTTCCGCGTTTTAGCAAa
gi|3 : ----GGGGTTGTGTGGATAAAACT-TCTTATTCATTGGATATGTCCATTCAAAA-TTTACCCAA-GTGGTATCCAAGATGCA-GTT-ATAAAACTTTAAA-GGAATAAATTATCACTC-AAATCCTTTTAAGTACA----T-TTTA-TTT-TGTTTTACACT-T-T---AAAGCAACATACTG-----------------------------------------------T-------C---AGAAAATGACAAAGCCGAGAAAAG-GAGA-----T-------GGTACCCA--CAGGCGTTTGCTT--AATATTTCT-CCGATTTTAAGATACATTTGCATTGCGTTTATATAA
gi|3 : CGATT--TTAA----GATACATTTGCATTGCGT-T----TAT------A------T-----------AA--CGTTG-----GA-----TTCTGGAGA-------TGA-CTTCCCCTTCTCTCTGTAA----TGTCTACATTT----ATTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCTT-C-A--A-AA---TA--T-------------------------TTTTCTGTTCCGTT-----T---------TCTGATCCGCGTTTTAGTAcgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|4 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctcATTATCTTAAAGATACTAAATTCGAT---TAACAGCAAAATCGATTTATAAAGGCTATGTT--TGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGG-------GATAAAAACCATTTATTTCATTGT---TTACTATT---GAGTTC-----GTATGGGAGCCAGTAAG---------AAAGC--------------ATT--------AAATCTGTGT-A-TGTT----TACTTA-TTT-ATTTGT---TTAT-T---A---CAACATACTGTCACATTCGATTGGAGAAAGAGGGGG--------GGGG---GGGGGGT-------C---AGAAAATGACAAATCCGAGAAA---GAGA-----T-------GACACCCT--CAAAAGCTTGTTTG-AATATTTTT-A--ATAATAAG-----TT---A
gi|5 : AAAAAAAAAACTAAACAT-GCATA--CATATAGAAAACGATAAAGCAACACAAATACATATGTATT-TGTATGAAGTAC------AAGTATGTG---------AAG--TGGTT-----GG-----TTCAGATCA-------GGG-CTTCTCGTTCTCTCTGTAA----TTTATGCTTCC----CCTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC---------A---CA--CT--C----ATTGGT-AC----AATATACTCCGTTCCG--------------------G------GTTTTAGCAACA-CCCcataattgattttaa
gi|6 : ATACATT-CGTATGCATTAT------A------TGTTTTATTTCAAA--CGGTGACTCTGA-----TTCTGGGGGGTGGGGGTGG-GT-CCCTTTCTCTCTGTAA----TTTCTGCTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTC------ATAA---GGGTTTT-C-------------------CGTTTTCCGTTTCGTC-----T---------TCCATTCCACGTTTTAGCAACA-Catc
gi|7 : cTG----TATTTA-TTT-TATTTT---AT-TGTGAAA---CAACATATTGTCACTATC----------------GGTAGAAAAGGGGA---GGGGG-------------AGAAAACGATAAAGTCGGTAAAAG-GGTG-----T-------GGTACCCA--CGGGAGCTTGCTT--AATATGATT-C--ATAATAAG-----TT---A
gi|7 : cagA----AATGTATATGCATT-GATATGAAGTAT------A------TG---------AAA---ATTG-----GA-----TTGTGAGGA-------aaacagctttcaaatgtatatgcattgatatgaagtatatgaaaattggattgtgagga
gi|8 : cagtgtatttattttattttattgtgaaacaacatattgtcactatcggtagaaaaggggagggggagaaaacgataaagtcggtaaaagggtgtggtacccacgggagcttgcttaatatgattcataataagttaaaacagctttcATATTTATGCATT-ATTATGAAGTGT------A------TG---------AAA--CAATG-----
gi|8 : CTCTCTGTAA----TT----CTTTT----CTTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCC-C-CCTATAA---CA--TTA-T-----T--GC-ATAC--AATAT-----ATTTCATT-----T---------TCCGTTCCGCGTTTTCGAAACG-CCCCccccccccctccacacacacacacggctcactctctgtaattcttttcttattcacagtacaaaatgctgccccccccccctataacattattgcatacaatatatttcattttccgttccgcgttttcgaaacgccccttccaaacct
gi|9 : atatttatgcattattatgaagtgtatgaaacaatgccccccccctccacacacacacacggctcaTATAAAGTTCGATATCCAGTAC---GTTGGATTTAAAAAGGTTGTATTAATGATGAAAAGTGTTG----GACAATTTTCATGGTCTTCttccaaacct
gi|9 : tacaaatacatg------A------TG---------AAAAGTGTTG-----GACAATTTTC-----A-------TGGTCTTCCCGATCTCTCTGTG-------------TCC----GTTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGAccgatctctctgtgtccgttgttcattagctgtttgattttacaaagtgctgaaactagttcaaattgtaaaacgctagatttcgttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA
Unaligned ( gi|21 ): ATACCATTAGTGCATACAATATTTTCCATTTTCCGCTCCGTTTTTCG
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 222 11 11 1 2222 11111 1 88888888888888888888888888888 0000000000000000000000000000000000000 2 1111 3333333333333333 8888888888888888888888888888888888888888888888888888 2222222222222 11 11111 111 222 4444444444444444444 11 1111 222222222222222222222222 11111 11111 11111111111 11111111 111 6666666666666666666666666666666666666666 111111111111111 11 11 11 7777777777777777 222 1
lowQualScore : 1 333 1 77 88 1 7 11 7 5 1 8888 66666 3 66666666666666666666666666666 1 4444444444444444444444444444444444444 3 0 2 7777 0 8 8 1 1 5555555555555555 5 2222222222222222222222222222222222222222222222222222 88 3 5 1111111111111 66 11 0 5 66 1 44444 000 0 3 555 6666666666666666666 33 7777 1 77 222222222222222222222222 777 1 00000 11111 55555555555 3 22222222 7777 999 6666 88888 66 0 1 0000000000000000000000000000000000000000 2 666666666666666 5 1 88 11 88 7777777777777777 777 3 1
lowQualScore : . ... . .. .. . . .. . . . .... ..... . ............................. . ..................................... . . . .... . . . . . ................ . .................................................... .. . . ............. .. .. . . .. . ..... ... . . ... ................... .. .... . .. ........................ ... . ..... ..... ........... . ........ .... ... .... ..... .. . . ........................................ . ............... . . .. .. .. ................ ... . .
lowQualScore : 0 333 0 77 33 0 3 00 3 5 0 3333 33333 3 00000000000000000000000000000 0 7777777777777777777777777777777777777 7 0 5 0000 8 0 0 0 0 1111111111111111 7 7777777777777777777777777777777777777777777777777777 44 9 0 6666666666666 99 99 8 0 99 0 33333 000 7 2 777 3333333333333333333 88 0000 7 44 777777777777777777777777 000 0 00000 11111 88888888888 9 33333333 7777 111 9999 33333 44 6 2 6666666666666666666666666666666666666666 4 888888888888888 0 0 33 00 33 3333333333333333 333 3 0
consensus : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAGAAAAC-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
Reference ( family-4860 ) : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---N-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TCAAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAGAAAAC-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
gi|1 : ATCATCCTAGAAATATGAAGTTTTGT---CAAAATCAAGTTCGAATTAAAAAGGCTATGTT--TAGGGAAAAAGGT-GAAAAAATAATTTTCATATTTTTCAA-TGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCATAG---ATCGTTAATT-------TT-----G-GTGGCAGCCAGTAAA-AAG-TGATAA---TTTGAACGG-ATAAATTAT-AATTGAAATCTTTTTCAGTATACAGGTATTTG-TTT-TTGTGT---CT-T-TT--A---CAATATAATGCCACAAT-----------------GG--------GAGT---GGAGGTTT------CTGAAAAAAGACAAAATCGGGAAACG-AGAA-----T-------AGCATCCA--TAGTCGCTTCCTG--AATATTTAT-C--ATGATAAA-----TT---ATGATGACAGTAAAAAAAAAAATT---CATAG--TAAAC-TATG----ACGATA--GTAA----AATATATATGTATT-TGTATGAAGTAT------A------TA---------AAA--TGATG-----GA-----TCCTGAGCA-------TGC-CTTCCCGTTCTCTCTGTAA----TTTCTGTCTCC----CTTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTC-CGA--ATAA---TA--TTA-C----AT--GT-ACATAAAATATTTTCTGCTCTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATGA-AA-------------TGTATT-C-ATATGAA-ATGGTACTATATGATTTTTCCAT
gi|10 : aTTC-AGTATA----TATTTAGTTTATTTTAT---CA-A-----A---CAATACACTGCCGAATTC----------------GG--------GGGATCGAGGGGTTGGTGGGGCAGAAAAC-GACAAAGCTGGGAAAGG-GGGGGGGGGTACGGGGAGGTACCCA--CAGGTGTTTGGTG--AATGTTTTT-C--TTCATAAG-----TT---ATaattggaataatatgggactcacagcgg
gi|11 : AT------A------TG---------AAA--CGCTG-----GA-----TTTTGAGGA-----------CTTCCCTTTCTCTCTGTAA----AATTTGTCTCT----CTTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTC-A-G--AAAA---TAG-TTT-CCG--AT---T-CCAT--TCCGCGTTCCGTTCTG-T-----T---------TCCGTTCCGTATTTTGGCAAaggcataacttcttt
gi|12 : CTGAGGA-------TGA-CTCCCCGTACCCTCTGTAA----TTTATGCTTCC----CTTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGACCTC--C-C-A--ATAA---CA--TTG-T----AC--ATAACATTCAATATTTTCCGTTT--TT-----TGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CC
gi|13 : ----AT--AT-ACATGAAATAGTTTCAGTTCCGTT-----T---------TACAT---G-----TAGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATT--TGTATAAA-ATGGTACTACATG
gi|14 : att---A---CGACATACTGTCACTACC----------------GG--------AGGA---GGGAAT---------AGGAAAT-GATGAAGTCGGTAAAAG-CGGG-----T-------GTTACCCA--CAGGCGCTTCCTT--ACAATGATT-C--ATAATA
gi|15 : gagAAAAG-GGGG-----C-------GGTATCCGTGCATGCACTTGCTT--AATAGGATT-C--ATAATGTG-----TT---Agctttaatgaattttcaaa
gi|17 : gtTGATTTCACAAA-TGATCGCCTCCTC-A-A--AAAA---TA--TTATC----AC--GT-CCA----ATGCATTCCGTTCCGTT-----T---------TCCATCCCGCATTTTAGGAACA-Caaatcgctttcaagtatacacttatatgtggtggcattgagcttacgaaaagtctgatactg
gi|18 : CTCTGTGAAAGATTTTTGTTTTC----CTTTTAC---AT---AA-----GC-ATTTAATTTTACAGAATACTGACTTCCTC------ATAAGTTCA--TTG-C----AT--G
gi|19 : -----GA-----TTTTGAGGA-------TTA-ATTCCC-TTTTTTCTGTAA----TCTTTGCTTCC----CAT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAAT
gi|2 : -T-T---G---CAACATGGTGGCAAAA----------------------------AGGA---GGGGGTTGGGG---CAGATATT-GACAAAGCCGGGAAAGGAGGGG-----T-------GACACCCA--CAGACGCTTGCTTTAAACATTTTTTC--ATGATATA-----TC---GTTGTGATTATAAA--------CTA--CAT-G--TA--C--ATA--------CA--GTAC----ACTGTAT---CAA--CTTATGAAGTATCGGAATA------TG---------AAA--CGATA-----GA-----TTCTGAGCA-------TGT-TTTCTTGATTTCTCTG-------------CTTCC----GTTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTGG-A--ATAT---TA--CTT-CATATAT--GT-ACA---AATACTTTATATTTTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTGA-AT-------------AATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATct
gi|20 : A-----GCCGTTTAATTTTACAAAATGCAAATCTCCTT------ATAA---CA--TTgttcgacagtattagtacttcagcag
gi|22 : gctctcattgttctataaatacatgttTATTTTTCGTTCCGTTTCATGT---------TCTGTTCCGCGTTTTAGCAAa
gi|3 : ----GGGGTTGTGTGGATAAAACT-TCTTATTCATTGGATA-TGTCCATTCAAAA-TTTACCCAA-GTGGTATCCAAGATGCA-GTT-ATAAAACTTTAAA-GGAATAAATTATCAC-TCAAATCCTTTTAAGTACA----T-TTTA-TTT-TGTTTTACACT-T-T---AAAGCAACATACTG-----------------------------------------------T-------CAGAAAAT-GACAAAGCCGAGAAAAG-GAGA-----T-------GGTACCCA--CAGGCGTTTGCTT--AATATTTCT-CCGATTTTAAGATACATTTGCATTGCGTTTATATAA
gi|3 : CGATT--TTAA----GATACATTTGCATTGCGT-T----TAT------A------T-----------AA--CGTTG-----GA-----TTCTGGAGA-------TGA-CTTCCCCTTCTCTCTGTAA----TGTCTACATTT----ATTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCTT-C-A--A-AA---TA--T-------------------------TTTTCTGTTCCGTT-----T---------TCTGATCCGCGTTTTAGTAcgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|4 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctcATTATCTTAAAGATACTAAATTCGAT---TAACAGCAAAATCGATTTATAAAGGCTATGTT--TGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGG-------GATAAAAACCATTTATTTCATTG---T-TTACTATT---GAGTTC-----GTATGGGAGCCAGTAAG---------AAAGC--------------------A--TTAAATCTGTGT-A-TGTT----TACTTA-TTT-ATTTGT---TTAT-T---A---CAACATACTGTCACATTCGATTGGAGAAAGAGGGGG--------GGGG---GGGGGGT-------CAGAAAAT-GACAAATCCGAGAAA---GAGA-----T-------GACACCCT--CAAAAGCTTGTTTG-AATATTTTT-A--ATAATAAG-----TT---A
gi|5 : AAAAAAAAAACTAAACAT-GCATA--CATATAGAAAACGATAAAGCAACACAAATACATATGTATT-TGTATGAAGTAC------AAGTATGTG---------AAG--TGGTT-----GG-----TTCAGATCA-------GGG-CTTCTCGTTCTCTCTGTAA----TTTATGCTTCC----CCTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC---------A---CA--CT--C----ATTGGT-AC----AATATACTCCGTTCCG--------------------G------GTTTTAGCAACA-CCCcataattgattttaa
gi|6 : ATACATT-CGTATGCATTAT------A------TGTTTTATTTCAAA--CGGTGACTCTGA-----TTCTGGGGGGTGGGGGTGG-GT-CCCTTTCTCTCTGTAA----TTTCTGCTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTC------ATAA---GGGTTTT-C-------------------CGTTTTCCGTTTCGTC-----T---------TCCATTCCACGTTTTAGCAACA-Catc
gi|7 : cTG----TATTTA-TTT-TATTTT---AT-TGTGAAA---CAACATATTGTCACTATC----------------GGTAGAAAAGGGGA---GGGGG----------AGAAAAC-GATAAAGTCGGTAAAAG-GGTG-----T-------GGTACCCA--CGGGAGCTTGCTT--AATATGATT-C--ATAATAAG-----TT---A
gi|7 : cagA----AATGTATATGCATT-GATATGAAGTAT------A------TG---------AAA---ATTG-----GA-----TTGTGAGGA-------aaacagctttcaaatgtatatgcattgatatgaagtatatgaaaattggattgtgagga
gi|8 : cagtgtatttattttattttattgtgaaacaacatattgtcactatcggtagaaaaggggagggggagaaaacgataaagtcggtaaaagggtgtggtacccacgggagcttgcttaatatgattcataataagttaaaacagctttcATATTTATGCATT-ATTATGAAGTGT------A------TG---------AAA--CAATG-----
gi|8 : CTCTCTGTAA----TT----CTTTT----CTTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCC-C-CCTATAA---CA--TTA-T-----T--GC-ATAC--AATAT-----ATTTCATT-----T---------TCCGTTCCGCGTTTTCGAAACG-CCCCccccccccctccacacacacacacggctcactctctgtaattcttttcttattcacagtacaaaatgctgccccccccccctataacattattgcatacaatatatttcattttccgttccgcgttttcgaaacgccccttccaaacct
gi|9 : atatttatgcattattatgaagtgtatgaaacaatgccccccccctccacacacacacacggctcaTATAAAGTTCGATATCCAGTAC---GTTGGATTTAAAAAGGTTGTATTAATGATGAAAAGTGTTG----GACAATTTTCATGGTCTTCttccaaacct
gi|9 : tacaaatacatg------A------TG---------AAAAGTGTTG-----GACAATTTTC-----A-------TGGTCTTCCCGATCTCTCTGTG-------------TCC----GTTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGAccgatctctctgtgtccgttgttcattagctgtttgattttacaaagtgctgaaactagttcaaattgtaaaacgctagatttcgttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA
Unaligned ( gi|21 ): ATACCATTAGTGCATACAATATTTTCCATTTTCCGCTCCGTTTTTCG
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 222 11 11 1 2222 11111 1 88888888888888888888888888888 0000000000000000000000000000000000000 2 1111 3333333333333333 8888888888888888888888888888888888888888888888888888 2222222222222 11 11111 111 222 4444444444444444444 11 1111 222222222222222222222222 11111 11111 11111111111 11111111 111 6666666666666666666666666666666666666666 111111111111111 11 11 11 7777777777777777 222 1
lowQualScore : 1 333 1 77 88 1 7 11 7 5 1 8888 66666 3 44444444444444444444444444444 1 4444444444444444444444444444444444444 1 0 2 7777 0 8 8 1 1 5555555555555555 5 2222222222222222222222222222222222222222222222222222 88 3 5 1111111111111 66 11 0 5 66 1 44444 000 0 3 555 6666666666666666666 33 7777 1 77 222222222222222222222222 777 1 00000 11111 55555555555 3 22222222 7777 999 6666 88888 66 0 1 0000000000000000000000000000000000000000 2 666666666666666 5 1 88 11 88 7777777777777777 777 3 1
lowQualScore : . ... . .. .. . . .. . . . .... ..... . ............................. . ..................................... . . . .... . . . . . ................ . .................................................... .. . . ............. .. .. . . .. . ..... ... . . ... ................... .. .... . .. ........................ ... . ..... ..... ........... . ........ .... ... .... ..... .. . . ........................................ . ............... . . .. .. .. ................ ... . .
lowQualScore : 0 333 0 77 33 0 3 00 3 5 0 3333 33333 3 77777777777777777777777777777 0 7777777777777777777777777777777777777 0 0 5 0000 8 0 0 0 0 1111111111111111 7 7777777777777777777777777777777777777777777777777777 44 9 0 6666666666666 99 99 8 0 99 0 33333 000 7 2 777 3333333333333333333 88 0000 7 44 777777777777777777777777 000 0 00000 11111 88888888888 9 33333333 7777 111 9999 33333 44 6 2 6666666666666666666666666666666666666666 4 888888888888888 0 0 33 00 33 3333333333333333 333 3 0
consensus : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAGAAAAC-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
Reference ( family-4860 ) : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAGAAAAC-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
gi|1 : ATCATCCTAGAAATATGAAGTTTTGT---CAAAATCAAGTTCGAATTAAAAAGGCTATGTT--TAGGGAAAAAGGT-GAAAAAATAATTTTCATATTTTTCAA-TGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCATAG---ATCGTTAATT-------TT-----G-GTGGCAGCCAGTAAA-AAG-TGATAA---TTTGAACGG-ATAAATTAT-AATTGAAATCTTTTTCAGTATACAGGTATTTG-TTT-TTGTGT---CT-T-TT--A---CAATATAATGCCACAAT-----------------GG--------GAGT---GGAGGTTT------CTGAAAAAAGACAAAATCGGGAAACG-AGAA-----T-------AGCATCCA--TAGTCGCTTCCTG--AATATTTAT-C--ATGATAAA-----TT---ATGATGACAGTAAAAAAAAAAATT---CATAG--TAAAC-TATG----ACGATA--GTAA----AATATATATGTATT-TGTATGAAGTAT------A------TA---------AAA--TGATG-----GA-----TCCTGAGCA-------TGC-CTTCCCGTTCTCTCTGTAA----TTTCTGTCTCC----CTTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTC-CGA--ATAA---TA--TTA-C----AT--GT-ACATAAAATATTTTCTGCTCTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATGA-AA-------------TGTATT-C-ATATGAA-ATGGTACTATATGATTTTTCCAT
gi|10 : aTTC-AGTATA----TATTTAGTTTATTTTAT---CA-A-----A---CAATACACTGCCGAATTC----------------GG--------GGGATCGAGGGGTTGGTGGGGCAGAAAAC-GACAAAGCTGGGAAAGG-GGGGGGGGGTACGGGGAGGTACCCA--CAGGTGTTTGGTG--AATGTTTTT-C--TTCATAAG-----TT---ATaattggaataatatgggactcacagcgg
gi|11 : AT------A------TG---------AAA--CGCTG-----GA-----TTTTGAGGA-----------CTTCCCTTTCTCTCTGTAA----AATTTGTCTCT----CTTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTC-A-G--AAAA---TAG-TTT-CCG--AT---T-CCAT--TCCGCGTTCCGTTCTG-T-----T---------TCCGTTCCGTATTTTGGCAAaggcataacttcttt
gi|12 : CTGAGGA-------TGA-CTCCCCGTACCCTCTGTAA----TTTATGCTTCC----CTTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGACCTC--C-C-A--ATAA---CA--TTG-T----AC--ATAACATTCAATATTTTCCGTTT--TT-----TGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CC
gi|13 : ----AT--AT-ACATGAAATAGTTTCAGTTCCGTT-----T---------TACAT---G-----TAGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATT--TGTATAAA-ATGGTACTACATG
gi|14 : att---A---CGACATACTGTCACTACC----------------GG--------AGGA---GGGAAT---------AGGAAAT-GATGAAGTCGGTAAAAG-CGGG-----T-------GTTACCCA--CAGGCGCTTCCTT--ACAATGATT-C--ATAATA
gi|15 : gagAAAAG-GGGG-----C-------GGTATCCGTGCATGCACTTGCTT--AATAGGATT-C--ATAATGTG-----TT---Agctttaatgaattttcaaa
gi|17 : gtTGATTTCACAAA-TGATCGCCTCCTC-A-A--AAAA---TA--TTATC----AC--GT-CCA----ATGCATTCCGTTCCGTT-----T---------TCCATCCCGCATTTTAGGAACA-Caaatcgctttcaagtatacacttatatgtggtggcattgagcttacgaaaagtctgatactg
gi|18 : CTCTGTGAAAGATTTTTGTTTTC----CTTTTAC---AT---AA-----GC-ATTTAATTTTACAGAATACTGACTTCCTC------ATAAGTTCA--TTG-C----AT--G
gi|19 : -----GA-----TTTTGAGGA-------TTA-ATTCCC-TTTTTTCTGTAA----TCTTTGCTTCC----CAT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAAT
gi|2 : -T-T---G---CAACATGGTGGCAAAA----------------------------AGGA---GGGGGTTGGGG---CAGATATT-GACAAAGCCGGGAAAGGAGGGG-----T-------GACACCCA--CAGACGCTTGCTTTAAACATTTTTTC--ATGATATA-----TC---GTTGTGATTATAAA--------CTA--CAT-G--TA--C--ATA--------CA--GTAC----ACTGTAT---CAA--CTTATGAAGTATCGGAATA------TG---------AAA--CGATA-----GA-----TTCTGAGCA-------TGT-TTTCTTGATTTCTCTG-------------CTTCC----GTTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTGG-A--ATAT---TA--CTT-CATATAT--GT-ACA---AATACTTTATATTTTGTT-----T---------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTGA-AT-------------AATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATct
gi|20 : A-----GCCGTTTAATTTTACAAAATGCAAATCTCCTT------ATAA---CA--TTgttcgacagtattagtacttcagcag
gi|22 : gctctcattgttctataaatacatgttTATTTTTCGTTCCGTTTCATGT---------TCTGTTCCGCGTTTTAGCAAa
gi|3 : ----GGGGTTGTGTGGATAAAACT-TCTTATTCATTGGATA-TGTCCATTCAAAA-TTTACCCAA-GTGGTATCCAAGATGCA-GTT-ATAAAACTTTAAA-GGAATAAATTATCAC-TCAAATCCTTTTAAGTACA----T-TTTA-TTT-TGTTTTACACT-T-T---AAAGCAACATACTG-----------------------------------------------T-------CAGAAAAT-GACAAAGCCGAGAAAAG-GAGA-----T-------GGTACCCA--CAGGCGTTTGCTT--AATATTTCT-CCGATTTTAAGATACATTTGCATTGCGTTTATATAA
gi|3 : CGATT--TTAA----GATACATTTGCATTGCGT-T----TAT------A------T-----------AA--CGTTG-----GA-----TTCTGGAGA-------TGA-CTTCCCCTTCTCTCTGTAA----TGTCTACATTT----ATTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCTT-C-A--A-AA---TA--T-------------------------TTTTCTGTTCCGTT-----T---------TCTGATCCGCGTTTTAGTAcgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|4 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctcATTATCTTAAAGATACTAAATTCGAT---TAACAGCAAAATCGATTTATAAAGGCTATGTT--TGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGG-------GATAAAAACCATTTATTTCATTG---T-TTACTATT---GAGTTC-----GTATGGGAGCCAGTAAG---------AAAGC--------------------A--TTAAATCTGTGT-A-TGTT----TACTTA-TTT-ATTTGT---TTAT-T---A---CAACATACTGTCACATTCGATTGGAGAAAGAGGGGG--------GGGG---GGGGGGT-------CAGAAAAT-GACAAATCCGAGAAA---GAGA-----T-------GACACCCT--CAAAAGCTTGTTTG-AATATTTTT-A--ATAATAAG-----TT---A
gi|5 : AAAAAAAAAACTAAACAT-GCATA--CATATAGAAAACGATAAAGCAACACAAATACATATGTATT-TGTATGAAGTAC------AAGTATGTG---------AAG--TGGTT-----GG-----TTCAGATCA-------GGG-CTTCTCGTTCTCTCTGTAA----TTTATGCTTCC----CCTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC---------A---CA--CT--C----ATTGGT-AC----AATATACTCCGTTCCG--------------------G------GTTTTAGCAACA-CCCcataattgattttaa
gi|6 : ATACATT-CGTATGCATTAT------A------TGTTTTATTTCAAA--CGGTGACTCTGA-----TTCTGGGGGGTGGGGGTGG-GT-CCCTTTCTCTCTGTAA----TTTCTGCTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTC------ATAA---GGGTTTT-C-------------------CGTTTTCCGTTTCGTC-----T---------TCCATTCCACGTTTTAGCAACA-Catc
gi|7 : cTG----TATTTA-TTT-TATTTT---AT-TGTGAAA---CAACATATTGTCACTATC----------------GGTAGAAAAGGGGA---GGGGG----------AGAAAAC-GATAAAGTCGGTAAAAG-GGTG-----T-------GGTACCCA--CGGGAGCTTGCTT--AATATGATT-C--ATAATAAG-----TT---A
gi|7 : cagA----AATGTATATGCATT-GATATGAAGTAT------A------TG---------AAA---ATTG-----GA-----TTGTGAGGA-------aaacagctttcaaatgtatatgcattgatatgaagtatatgaaaattggattgtgagga
gi|8 : cagtgtatttattttattttattgtgaaacaacatattgtcactatcggtagaaaaggggagggggagaaaacgataaagtcggtaaaagggtgtggtacccacgggagcttgcttaatatgattcataataagttaaaacagctttcATATTTATGCATT-ATTATGAAGTGT------A------TG---------AAA--CAATG-----
gi|8 : CTCTCTGTAA----TT----CTTTT----CTTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCC-C-CCTATAA---CA--TTA-T-----T--GC-ATAC--AATAT-----ATTTCATT-----T---------TCCGTTCCGCGTTTTCGAAACG-CCCCccccccccctccacacacacacacggctcactctctgtaattcttttcttattcacagtacaaaatgctgccccccccccctataacattattgcatacaatatatttcattttccgttccgcgttttcgaaacgccccttccaaacct
gi|9 : atatttatgcattattatgaagtgtatgaaacaatgccccccccctccacacacacacacggctcaTATAAAGTTCGATATCCAGTAC---GTTGGATTTAAAAAGGTTGTATTAATGATGAAAAGTGTTG----GACAATTTTCATGGTCTTCttccaaacct
gi|9 : tacaaatacatg------A------TG---------AAAAGTGTTG-----GACAATTTTC-----A-------TGGTCTTCCCGATCTCTCTGTG-------------TCC----GTTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGAccgatctctctgtgtccgttgttcattagctgtttgattttacaaagtgctgaaactagttcaaattgtaaaacgctagatttcgttt
blockSeqs : T ATC C GC AA T T AG T A T . GTTGT A GATATGTCCATTCAAAATTTACCCAA T CAGTTATAAAACTTTAAAGGAATAAATTATCAC C A G . G A T A ACACTTTAAAG C CATTCGATTGGAGAAAGAGGGGGGGGGGGGGGGT C G A GGGGGTACGGGGA TG TA T CG C ATACA TGC A AAA GCATACATATAGAAAA AA CACA T GC ATGTTTTATTTC AGT C ACTCT CAATT GTGGGGGTGG T AAGATTTT AAAT TTA TAAA TAAGC CT C GGAATATTACTTCATATATGTACAA G TGTCCCACGA T T TC TG TT TAATACCTCCCCAAAT CCT G T
blockSeqs : A . T C . G T . . . . . TTTACTATTGAGTTCGT G AAAGCA T . G . . . G T ATTGTGAAA T AATTCGGGGGATCGAGGGGTTGGTGGGG T A . T . G . . A . . A A GTACATA . . A C CGGAATATG C A . . TGGT G AATT . ATA T . CT C CAATAACATTGTACATAACATTCA T TCATGT . A . . . AT T .
blockSeqs : . . . . . T G TTATTA G CTATCGGTAGAAAAGGGGAGGGGG T A . C . . . . A . . . . . A T AAGTATGTG C T . . TGA G TTTA . TTT T . GT C AGAAAATAGTTTCCGATTCCATT T T .
blockSeqs : . . . A T CAAA T AAAAGGAGGGGGTTGGGG T G . T . . . . G . . . A C ATG C G . . TTA C TCTT . . T . CG C CCCTATAACATTATTGCATACA A T .
blockSeqs : T CTACCGGAGGAGGGAAT T A . T . . . . T . . A G ATG T G . . TGT G TGTC . . T . CG T AAAAAATATTATCACGTCCA T T .
blockSeqs : . T C A . T . . . . A . . . A ATG C T . . TGA T TTTA . . A . TT T ACACTCATTGGTACA T T .
blockSeqs : . . T . . . . A ATG C A . . GGG G TTTC . . C . CC C ATAAGGGTTTTC T T .
blockSeqs : AT . T . . . . TT . . C . TG G CAAAATAT A T
blockSeqs : . . . . T . A C T T
blockSeqs : . . . . . . . . .
blockSeqs : . .
blockSeqCons : **** ACTAAA********** T* NNAAAACATTATCGCGTNCA********************
originalCons : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNT---CT-T-T---A---CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAGAAAAC-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTC-C-A--ATAA---CA--TTN-C----AT--GT-ACAT--AATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
finalCons : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-AGTATA----TATTTA-TTT-TTTTNTACTAAA----------CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------CAGAAAAT-GACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTCNNAAAACATTATCGCGTNCA--------------------ATATTTTCCGTTCCGTT-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA
Unaligned ( gi|21 ): ATACCATTAGTGCATACAATATTTTCCATTTTCCGCTCCGTTTTTCG
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 222 11 11 1 2222 11111 1 88888888888888888888888888888 0000000000000000000000000000000000000 222 2222 333333333333 88888888888888888888888888888888888888888888888888888888 2222222222222 11 11111 111 222 4444444444444444444 11 1111 222222222222222222222222 11111 11111 11111111111 11111111 111 1111111 4444444444444444444444444 11111111111111111111 11 11 11 7777777777777777 222 1
lowQualScore : 1 333 1 77 88 1 7 11 7 5 1 8888 66666 3 44444444444444444444444444444 1 4444444444444444444444444444444444444 1 111 8888 0 6 1 888888888888 5 5 66666666666666666666666666666666666666666666666666666666 2 3 5 1111111111111 66 11 0 5 66 1 44444 000 0 3 555 6666666666666666666 33 7777 1 77 222222222222222222222222 777 1 00000 11111 55555555555 3 22222222 7777 999 6666 88888 66 0 1 9999999 1 3 0000000000000000000000000 0 66666666666666666666 5 1 88 11 88 7777777777777777 777 3 1
lowQualScore : . ... . .. .. . . .. . . . .... ..... . ............................. . ..................................... . ... .... . . . ............ . . ........................................................ . . . ............. .. .. . . .. . ..... ... . . ... ................... .. .... . .. ........................ ... . ..... ..... ........... . ........ .... ... .... ..... .. . . ....... . . ......................... . .................... . . .. .. .. ................ ... . .
lowQualScore : 0 333 0 77 33 0 3 00 3 5 0 3333 33333 3 77777777777777777777777777777 0 7777777777777777777777777777777777777 0 000 0000 8 2 0 222222222222 7 7 44444444444444444444444444444444444444444444444444444444 3 9 0 6666666666666 99 99 8 0 99 0 33333 000 7 2 777 3333333333333333333 88 0000 7 44 777777777777777777777777 000 0 00000 11111 88888888888 9 33333333 7777 111 9999 33333 44 6 2 8888888 8 3 0000000000000000000000000 2 00000000000000000000 0 0 33 00 33 3333333333333333 333 3 0
consensus : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-A-GTATAC---TATTTATTTTNTTTTAT----T---AAA-CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------C---AGAAAACGACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTCNN--AA-AACA-TT----A--T-C----GCG-TAC----AATATTTTCCGTTCCGT----T-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
Reference ( family-4860 ) : NATCATCCTAGAGATATNAAGTTCGAT---CAANANCAAGTTCGATTTAAAAAGGCTATGTT--TGGGGAAAANTGTTGAGAAAATAATTTTCATGTTTTTCAAATGCCGTTTTCTGGGNGGAA----GGGGTTG-GTGGTTAAAACT-TCTAATTCATTG---A-CGTCNATT---GA-TTC-----G-GTGGNAGCCAGTAAG-A-G-T-ATAAAGCTTTGAA-GG-ATAAATTAT-A--TNAAATCTTTTT-A-GTATA----TATTTATTTTTTTNTAC----T---AAA-CAACATACTGTCACAATC----------------GG--------GGGA---GGGGGTT-------C---AGAAAATGACAAAGCCGGGAAAAG-GGGG-----T-------GGTACCCA--CAGGCGCTTGCTT--AATATTTTT-C--ATAATAAG-----TT---ATTGCGATTATAAAAAAAAAAACTA--CAT-G--TA--C-TATA----ACGATA--GTAA----AATATATATGCATT-CGTATGAAGTAT------A------TG---------AAA--CGNTG-----GA-----TTCTGAGGA-------TGG-CTTCCCGTTCTCTCTGTAA----TTTCTGCTTCC----CTTGTTC---AT---AA-----GCCNTTTGATTTTACAAAATGCTGACCTCCTCNN--AA-AACA-TT----A--T-C----GCG-TNC----AATATTTTCCGTTCCGT----T-----T---------TCCGTTCCGCGTTTTAGCAACA-CCCCAAATATNTA--AACTTGCTGCATATC--AATGA-AA-------------TGTATT-CTATATAAA-ATGGTACTACATGNTTTTTCCAT
gi|1 : ATCATCCTAGAAATATGAAGTTTTGT---CAAAATCAAGTTCGAATTAAAAAGGCTATGTT--TAGGGAAAAAGGT-GAAAAAATAATTTTCATATTTTTCAA-TGCCATTTTTTGAGAAGAATGATGGTGTTG-GTGGTTGAAACT-TCTAATTCATAG---ATCGTTAATT-------TT-----G-GTGGCAGCCAGTAAA-AAG-TGATAA---TTTGAACGG-ATAAATTAT-AATTGAAATCTTTTTCA-GTATACAGGTATTTGTTTTTGTGTCT----T---TTA-CAATATAATGCCACAAT-----------------GG--------GAGT---GGAGGTT-------TCTGAAAAAA-GACAAAATCGGGAAACG-AGAA-----T-------AGCATCCA--TAGTCGCTTCCTG--AATATTTAT-C--ATGATAAA-----TT---ATGATGACAGTAAAAAAAAAAATT---CATAG--TAAAC-TATG----ACGATA--GTAA----AATATATATGTATT-TGTATGAAGTAT------A------TA---------AAA--TGATG-----GA-----TCCTGAGCA-------TGC-CTTCCCGTTCTCTCTGTAA----TTTCTGTCTCC----CTTATTC---AT---AA-----GCCCTTTGATTTTACAAAATGCTGATCTCCTCCG--AATAATA-TT----A----C----ATG-TACATAAAATATTTTCTGCTCTGT----T-----T---------TCCGTTCCCCGTTTTAGCAACA-CCCCAAATATCTA--AACTTACTGCACATC--AATGA-AA-------------TGTATT-C-ATATGAA-ATGGTACTATATGATTTTTCCAT
gi|10 : aTTC-A-GTATA----TATTTAGTTTATTTTAT----C---AAA-CAATACACTGCCGAATTC----------------GG--------GGGATCGAGGGGTTGGTGGGGC---AGAAAACGACAAAGCTGGGAAAGG-GGGGGGGGGTACGGGGAGGTACCCA--CAGGTGTTTGGTG--AATGTTTTT-C--TTCATAAG-----TT---ATaattggaataatatgggactcacagcgg
gi|11 : AT------A------TG---------AAA--CGCTG-----GA-----TTTTGAGGA-----------CTTCCCTTTCTCTCTGTAA----AATTTGTCTCT----CTTGTTCTTAAT---AA-----GCCTTTTAA-TTTACAAAATGCTGACATCCTCAG--AA-AATA-GT----T--T-C-----CGATTC------CATTCCGCGTTCCGTTCTGT-----T---------TCCGTTCCGTATTTTGGCAAaggcataacttcttt
gi|12 : CTGAGGA-------TGA-CTCCCCGTACCCTCTGTAA----TTTATGCTTCC----CTTGTTCATAAT---AA-----GCCTTTTGATTTTACAAAATGCCGACCTC--CCA--AT-AACA-TTGTACA--T-A----ACA-TTC----AATATTTTCCGTTT--T----T-----TGTCCCACGATCCGTTCCGCGTTTTAGCACCG-CC
gi|13 : A-TT----A--TAT----ACA-TGA----AATAGTTTCAGTTCCGT----T-----T---------TACAT---G-----TAGCAACATCCCCAAGTATTTA--GACTTGCTGCATATC--AATGATAATACCTCCCCAAATTGTATT--TGTATAAA-ATGGTACTACATG
gi|14 : ---AGA-CGACATACTGTCACTACC----------------GG--------AGGA---GGGAAT------------AGGAAATGATGAAGTCGGTAAAAG-CGGG-----T-------GTTACCCA--CAGGCGCTTCCTT--ACAATGATT-C--ATAATA
gi|15 : gAAAAG-GGGG-----C-------GGTATCCGTGCATGCACTTGCTT--AATAGGATT-C--ATAATGTG-----TT---Agctttaatgaattttcaaa
gi|17 : gtTGATTTCACAAA-TGATCGCCTCCTCAA--AA-AATA-TT----A--T-C----ACG-TCC----AATGCATTCCGTTCCGT----T-----T---------TCCATCCCGCATTTTAGGAACA-Caaatcgctttcaagtatacacttatatgtggtggcattgagcttacgaaaagtctgatactg
gi|18 : CTCTGTGAAAGATTTTTGTTTTC----CTTTTAC---AT---AA-----GC-ATTTAATTTTACAGAATACTGACTTCCTCAT--AA-
gi|19 : -----GA-----TTTTGAGGA-------TTA-ATTCCC-TTTTTTCTGTAA----TCTTTGCTTCC----CAT-TTC---ATAAAAA-----GCGTTTTGATTTTACACAATgttcattgcatg
gi|2 : -CAACATGGTGGCAAAA----------------------------AGGA---GGGGGTTGGGG---C---AGATATTGACAAAGCCGGGAAAGGAGGGG-----T-------GACACCCA--CAGACGCTTGCTTTAAACATTTTTTC--ATGATATA-----TC---GTTGTGATTATAAA--------CTA--CAT-G--TA--C--ATA--------CA--GTAC----ACTGTAT---CAA--CTTATGAAGTATCGGAATA------TG---------AAA--CGATA-----GA-----TTCTGAGCA-------TGT-TTTCTTGATTTCTCTG-------------CTTCC----GTTGTGT---AT---AA-----GTCGTTTGATTTTACAAAGTGTTGATCTCCTTGG-----AATA-TT----ACTT-CATATATG-TACA---AATACTTTATATTTTGT----T-----T---------TCCGTTCCCCGTTTTAGCAACA-GCCCAAATATATATCAATT------ATATCTTATTGA-AT-------------AATATTCCTATATAAAGATGGTGCTACATGTTTTTTTCATct
gi|20 : ttgA-----GCCGTTTAATTTTACAAAATGCAAATCTCCTTAT-----AACA-TT----A--gttcgacagtattagtacttcagcag
gi|21 : gctctcattgttctataaatacatgttCA-TT----A--G-T----GCA-TAC----AATATT-----TTCCAT----T-----T---------TCCGCTC--CGTTTT
gi|22 : atacTATTTTTCGTTCCGT----TTCATGT---------TCTGTTCCGCGTTTTAGCAAtcg
gi|3 : ----GGGGTTGTGTGGATAAAACT-TCTTATTCATTGGATA-TGTCCATTCAAAA-TTTACCCAA-GTGGTATCCAAGATGCA-GTT-ATAAAACTTTAAA-GGAATAAATTATCAC-TCAAATCCTTTTAA-GTACA----T-TTTATTTTGTTTTACACTTT---AAAGCAACATACTG-----------------------------------------------T-------C---AGAAAATGACAAAGCCGAGAAAAG-GAGA-----T-------GGTACCCA--CAGGCGTTTGCTT--AATATTTCT-CCGATTTTAAGATACATTTGCATTGCGTTTATATAA
gi|3 : CGATT--TTAA----GATACATTTGCATTGCGT-T----TAT------A------T-----------AA--CGTTG-----GA-----TTCTGGAGA-------TGA-CTTCCCCTTCTCTCTGTAA----TGTCTACATTT----ATTGTTCTTTAA---AA-----GCTTTTTGAATTTTCAAAATGACGA-CTCCT-TC--AA-AATA-T------------------------------TTTTCTGTTCCGT----T-----T---------TCTGATCCGCGTTTTAGTAcgttggattctggagatgacttccccttctctctgtaatgtctacatttattgttctttaaaagctttttgaattttcaaaatgacgactccttcaaaatatttttctgttccgttttctgatccgcgttttagta
gi|4 : ggggttgtgtggataaaacttcttattcattggatatgtccattcaaaatttacccaagtggtatccaagatgcagttataaaactttaaaggaataaattatcactcaaatccttttaagtacattttattttgttttacactttaaagcaacatactgtcagaaaatgacaaagccgagaaaaggagatggtacccacaggcgtttgcttaatatttctcATTATCTTAAAGATACTAAATTCGAT---TAACAGCAAAATCGATTTATAAAGGCTATGTT--TGGGGATAATTGTTGAGAAAATTAT-----TGTTTTTCAAATGTTGTTTTCTGGGTGGAA----GGG-------GATAAAAACCATTTATTTCATTG---T-TTACTATT---GAGTTC-----GTATGGGAGCCAGTAAG---------AAAGC--------------------A--TTAAATCTGTGT-ATGTTTACT--TATTTATTTGTTTAT------T-----A-CAACATACTGTCACATTCGATTGGAGAAAGAGGGGG--------GGGG---GGGGGGT-------C---AGAAAATGACAAATCCGAGAAA---GAGA-----T-------GACACCCT--CAAAAGCTTGTTTG-AATATTTTT-A--ATAATAAG-----TT---A
gi|5 : AAAAAAAAAACTAAACAT-GCATA--CATATAGAAAACGATAAAGCAACACAAATACATATGTATT-TGTATGAAGTAC------AAGTATGTG---------AAG--TGGTT-----GG-----TTCAGATCA-------GGG-CTTCTCGTTCTCTCTGTAA----TTTATGCTTCC----CCTGTTT---A-----------------TGAATTTACAAAATGCTGTCCTCCTC--------ACACTC----A--T-T----G-G-TAC----AATATACTCCGTTCCG------------------------G------GTTTTAGCAACA-CCCcataattgattttaa
gi|6 : ATACATT-CGTATGCATTAT------A------TGTTTTATTTCAAA--CGGTGACTCTGA-----TTCTGGGGGGTGGGGGTGG-GT-CCCTTTCTCTCTGTAA----TTTCTGCTTCCAAATGTTGTTC---AC---AATAAGCGCCCTTTCATCTTACAAAATGCTGAGCTCCTCAT--AA-GG-G-TT----T--T-C-----CG------------TTTTCCGTTTCGT----C-----T---------TCCATTCCACGTTTTAGCAACA-Catc
gi|7 : cTG----TATTTATTTTATTTTAT----TGTGAAA-CAACATATTGTCACTATC----------------GGTAGAAAAGGGGA---GGGGG-------------AGAAAACGATAAAGTCGGTAAAAG-GGTG-----T-------GGTACCCA--CGGGAGCTTGCTT--AATATGATT-C--ATAATAAG-----TT---A
gi|7 : cagA----AATGTATATGCATT-GATATGAAGTAT------A------TG---------AAA---ATTG-----GA-----TTGTGAGGA-------aaacagctttcaaatgtatatgcattgatatgaagtatatgaaaattggattgtgagga
gi|8 : cagtgtatttattttattttattgtgaaacaacatattgtcactatcggtagaaaaggggagggggagaaaacgataaagtcggtaaaagggtgtggtacccacgggagcttgcttaatatgattcataataagttaaaacagctttcATATTTATGCATT-ATTATGAAGTGT------A------TG---------AAA--CAATG-----
gi|8 : CTCTCTGTAA----TT----CTTTT----CTTATTC---AC---AG-----------------TACAAAATGCTGCCCCCCCCCCCTAT-AACA-TT----A--T-T----GCA-TAC----AATAT-----ATTTCAT----T-----T---------TCCGTTCCGCGTTTTCGAAACG-CCCCccccccccctccacacacacacacggctcactctctgtaattcttttcttattcacagtacaaaatgctgccccccccccctataacattattgcatacaatatatttcattttccgttccgcgttttcgaaacgccccttccaaacct
gi|9 : atatttatgcattattatgaagtgtatgaaacaatgccccccccctccacacacacacacggctcaTATAAAGTTCGATATCCAGTAC---GTTGGATTTAAAAAGGTTGTATTAATGATGAAAAGTGTTG----GACAATTTTCATGGTCTTCttccaaacct
gi|9 : tacaaatacatg------A------TG---------AAAAGTGTTG-----GACAATTTTC-----A-------TGGTCTTCCCGATCTCTCTGTG-------------TCC----GTTGTTC---AT---TA-----GCTGTTTGATTTTACAAAGTGCTGAccgatctctctgtgtccgttgttcattagctgtttgattttacaaagtgctgaaactagttcaaattgtaaaacgctagatttcgttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCATGATGGATTGCTTATTATCATTCATACATGTCATAAGTTTAATAATGGTTTTTGAATATTTATGCATTATTATGAAGTGTATGAAA