lowQualScore : 11111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 1 11 1 1 1 1 1 1 4 1 1 99999999999 1 22 1 333 22 55555555555555555555555555555555555555555555555555555555555555555555555555555 1 222 333 22 1 1 333333 1 1 4444444444 11 22 222 11 1 1 2 2222 5555555 22 333 22 1 1 1 1 1 000000000000 2222 22 22222 33333 44444444444 2222 333 1 3333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 1 4 999999999999999 222 44444 11 22
lowQualScore : 5 777 8 4 99 3 0 666 3 55 5 3 6 2 444 5 5 2 33 7 5 6 5 6 5 0 7 6 6 6 5 00000000000 6 5 11 2 5 555 2 77 3 3 00000000000000000000000000000000000000000000000000000000000000000000000000000 5 666 333 77 6 3 7 5 888888 3 7 6 7 55 7 99 7777777777 88 55 555 77 5 2 5 0 3 4444 6 2 6666666 6 66 000 44 5 6 5 5 5 222222222222 6 8888 0 00 00000 33333 55555555555 8888 4 555 5 3 2222 999 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 6 7 0 222222222222222 2 3 111 55555 3 4 77 77 6
lowQualScore : . ... . . .. . . ... . .. . . . . ... . . . .. . . . . . . . . . . . . ........... . . .. . . ... . .. . . ............................................................................. . ... ... .. . . . . ...... . . . . .. . .. .......... .. .. ... .. . . . . . .... . . ....... . .. ... .. . . . . . ............ . .... . .. ..... ..... ........... .... . ... . . .... ... ................................................................................................................... . . . . ............... . . ... ..... . . .. .. .
lowQualScore : 0 000 7 0 66 3 7 444 6 55 7 2 0 7 777 3 0 9 99 0 0 0 0 0 0 0 0 0 0 0 0 00000000000 0 0 00 5 5 000 5 55 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555 5 000 555 55 7 3 3 3 333333 3 0 7 3 00 0 00 0000000000 00 55 000 55 0 5 0 0 0 5555 0 5 5555555 0 00 555 00 5 0 5 0 0 555555555555 7 3333 7 77 77777 33333 00000000000 3333 0 000 0 0 0000 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 000000000000000 5 0 555 55555 0 0 55 55 0
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---T-TGACT-C-TGATANTTTAACGCT-ATC---CAGCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGGTGNTGACAGACAGATCCCGANTGTGTTGTGNATGGANAGAGAGGGGGATTTGGGGAGGACAATCAGGTGGATTTTTGGGAAAGAGCAATAAAGTGGGGAGACTGTGGTGTGTAGTGCTGAGACATTTGTTGTANNGTGAATGTCCTGGGATGTCAATCA-GTTGATACAATTTTATCA-AAGTCTGACGTAAGACCTCTG------TTGTA-TACACTGATTGATGAAGNNGGATCTACAGGGANGGTGAGNGTNATCTNCTGGGGGCGGGGGCAGATGTCAATGTCACGGGTGAGGTATAGAGANTATGACTCTGTGCTTAGGTGTGNCCGTTCTAGNNAGGACGAGNCGAGCGGGTTGTGTGAGTACAGTAGGGGTGNGCAGATTGGTCNTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGA----GATAAA-GAAACA-TGT-CGG-----AAGACGA----TCGGTATAGT----CCCNGAGATATGCGAGATAANGAAANATGNNNGAAGAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTTAGTC-CCTGATAGAATNNNNNNNNNNNNNNNNNNNNNNAGTACAA---AAAGTGATGTGTAGATAAANANATATATCGGAAGACNACAACTCNGTNTAGTCCCTGATAGAAGACTGTAGAGAAATGT
Reference ( gi|1 ) : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---T-TGACA-C-TGATATTCTAACGCT-ATC---CTGCAGAG-GGTG--AATTGCCAAGTAATAATGACGGGAATATACCACTGATAGCTGTATGTGAGAGAGGACATGCTAGTGTGGTAGAGGAGCTGGTGAAGGGGTGGGAGTGATGTCAATCTACAGGATGGTGACGGGGAATACACCACTGATACATGCAACAGTAAAATGTTTAGTGGAACATTGACCTGACTTGGTTACTCAGGATGTTGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAATAAA-TCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCTG-----------ACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTG--GTGTATGGATAG------AGA---------------------G--------------------------GGAGATT------TA-----CTGAGACATTTGTTGT-TTGTGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTG------TTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTTAGTGTA--CTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAGAGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGCG------------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGAA--TTGTAGAGAGATGTTGTTACTGAGTAC
gi|10 : TTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---T-TGACT-C-TAATATTTTAACGCT-ATC---CAGCAGCG-GGTG--AATTGCC
gi|6 : gTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---T-TGACT-CTTGATGATTTAACGCT-ATT---CAGCAGCG-GGTG--AATTGCCta
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---T-ATACT-C-TGATAATTGAACTCT-ATC---CAACATCA-GGTG--AATTGCCt
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---T-TG--A-C-TGATAATTTCAT-CT-ATC---CAGCAGCG-AGTG--AAta
gi|8 : agTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---TAT--CT-C-T-ATAATTGAACTCTAATC---CAACATCA-GGTG--AATTGCC
gi|9 : gAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---T-AAACT-C-TAATATCTTAACGCT-ATC---CAACAGCA-GGTT--GATTGCCc
gi|5 : tcAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---T-TGACT-CTTGATAATTTAACGCT-ATT---CAGCAGCG-GATG--AATTGTCt
gi|20 : atcAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAtac
gi|19 : gtcAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CA
gi|11 : ggtcAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---C-CAATACC-TAATAta
gi|14 : gttctCAC-ATTATTGGACAGT-CCGCGTTG---C-TGACT-C-TAATGTTTTATTGCT-CTC---CAGCaattggaactgatattcatcatc
gi|13 : ATTGGACACT-CAGAGTTACTAT-TGACT-T-CTACACGTTAACGCT-ATC---CAGCAGCG-GGTG--AATTGCCTAGT
gi|16 : atcacG---T-TGACT-C-TGATATTTTAACGCT-ATCCAGCTGCAGCG-GGTG--AATTGCC
gi|18 : tgGACT-C-TGATATTTTAACGCT-AGG---CAGCAGCG-GGTG--AATTGCt
gi|17 : -C-TGATATTTTAACGCT-ATC---CAGCTGCGCGGTG--AATTGCCat
gi|21 : actc-C-TGATAATTTAACGCT-ATC---CAGCAGCG-GGTGAAAATTGCCta
gi|23 : ATATTTTAACGCC-ATC---CAGCAGCG-GGTG--AATTGCC
gi|22 : TTTAACGCT-ATC---CAGCAGCG-GGTG--AATTACCTAGTta
gi|2 : aTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTA--GTGTATGGATAGAGAGGGAGATTTGGGGAGGACAATCAGGTGG--------------------------GGAGACTGTGGTGTA-----CTGAGACATTTGTTGT-GTGTGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTG------TTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGGTGAGTATC--CTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCTAGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTGC--AGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAt
gi|3 : ggttgGATGTGGTGCTGACAA-CAGATTCCGACTGTGTTGTGGATAGAGAG------GGA---------------------GATTTTTGGGAAAGAGCAATAAAGTGGGGAGACT------TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATCA--AGTCTGATGTAAGTCCTCTG------TTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG---GAGTAATCTT-TGG--GCAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AGAGAACGAGGCGAGCGGGTTGTGTGAGTACAGT--GGATGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAGTG------------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----Caacga
gi|2 : atgTCAATCA-GTGTATACAA------CAGAGGTCTTACATCAGACTTATGATAAAATTGTA-TCAACAGATTGAtgataaaagactgtagagaaatgta
gi|15 : ggttgtgatatcaatgtgtcggcagtatatacagcattaaaactgaacaaaccagataaagtgaaatatcttgtacagtatcaaaataaaatcattcccagtaaatgtactggaaatgtacaactattaaattgtctggtggacatcagacatgctggagttaaaaccgacagtaatgatgatgtgatggtgacagacagatcagtgtagtgtatggatagagagggagatttggggaggacaatcaggtggggagactgtggtgtactgagacatttgttgtgtgtgagtctggatgTGCGA----GATAAA-GAAATA-TAT-CGG-----AAGACTC----TCTGTTTAGT----CCCTGAtgaagggagatctacagggagggtgagtatcctgctgggggcgggggcagatgtcaatgtcagggtgaggtatagagagtatgactctgtgttaggtgtgtctgttctagttaggacgagccgacggtgtgagtacagtaggagtgcagattggtttagatgtgagtacaaagtgaagaagtacaagaaagcgatgaacgcgcttatgtgtgattatggtaaatgaaacattgtgcagttattaagccgaacagatagtcagacccagagatatatgaataacgagatgagtaaaaactggttagtaaagtaagaaaggtgggatcgtcagagaggttagagaagagcagcatgatgcattagagagaggtaagtagcaggaggtgcagagagaagcagatagaagagagagagagaaacga
gi|15 : ---TGCGAGATAAAGAAATATATCGGAAGACtagaat
gi|15 : TCTGTTTAGTC-CCTGATAGAATtctctgtttagtccctgatagaat
gi|3 : tgcgagataaagaaatatatcggaagactcAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGT
gi|15 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaa-AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA--Ta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 44444444444 1 333 33 1 111111111111111111111111111111111111111111111111111111111111111111111 222 33333333 1 33 1 11 333 2 2 11 2 22 11 22 22 777777777777 2222 22 444444444444 2222 1 2222 222 1 333 22 222222 222 4444 2 1 11 222222 1 2222 2 3333333 2 555555555555555555555555555555555555555555555555555555555 2 4444444444444444444444 333 11 1 44444
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 3 3 3 5 4 3 22222222222 2 3 1 2 666 1 00 0 0 1 8 3 666666666666666666666666666666666666666666666666666666666666666666666 7 555 22222222 6 3 44 6 3 6 7 222 0 1 44 1 111 1 7 3 6 6 1 3 1 0 99 0 1 3 22 11 0 99 44 7 3 7 6 6 444444444444 6 8888 1 00 333333333333 8888 6 8888 1 111 6 5 1 111 333 77 55 999999 2 000 2 2222 0 5 88 999999 5 3 3333 2 0 9999999 0 777777777777777777777777777777777777777777777777777777777 4 0 1111111111111111111111 555 88 5 1 1 7 0 55555 1 1 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . . ... . .. . . . . . ..................................................................... . ... ........ . . .. . . . . ... . . .. . ... . . . . . . . . . .. . . . .. .. . .. .. . . . . . ............ . .... . .. ............ .... . .... . ... . . . ... ... .. .. ...... . ... . .... . . .. ...... . . .... . . ....... . ......................................................... . . ...................... ... .. . . . . . ..... . . . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 5 0 0 0 777 0 77 8 8 0 2 2 777777777777777777777777777777777777777777777777777777777777777777777 3 777 77777777 7 3 00 0 3 7 3 777 7 0 00 0 777 0 3 3 7 7 0 3 0 7 77 7 0 3 00 00 7 00 33 3 7 3 7 7 333333333333 7 3333 0 77 777777777777 3333 0 3333 0 555 0 0 0 555 000 55 55 555555 5 555 5 5555 0 0 55 555555 5 0 5555 5 0 0000000 0 000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 000 00 5 0 0 3 7 33333 0 0 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTG--GTGTACGGATAGAGAGGGAGATTTGG-GG-GACAA-CAG------GTGG---T-TGG---------ATAGAG-GGGGAGACT------TG---TGCTGAGACATTTGTTGT-TTGTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGGT-AGTGTA--CTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCTAG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGCGATG---------ATGTGTGA----GGTAAA-GAAACAT-GT-CAG-----AAGACGA----TCGG-ATAGTC----CCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTNNNGGGGAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGGTGNTGACAGACAGATCCCGANTGTGTTGTGNATGGANAGAGAGGGGGATTTGGGGAGGACAATCAG------GTGGATTTTTGGGAAAGAGCAATAAAGTGGGGAGACTGTGGTGTGTAGTGCTGAGACATTTGTTGTANNGTGAATGTCCTGGGATGTCAATCA-GTTGATACAATTTTATCA-AAGTCTGACGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGNNGGATCTACAGGGANGGTGAGNGTNATCTNCTGGGGGCGGGGGCAGATGTCAATGTCACGGGTGAGGTATAGAGANTATGACTCTGTGCTTAGGTGTGNCCGTTCTAGNNAGGACGAGNCGAGCGGGTTGTGTGAGTACAGTAGGGGTGNGCAGATTGGTCNTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGA----GATAAA-GAAACAT-GT-CGG-----AAGACGA----TCGGTATAGTC----CCNGAGATATGCGAGATAANGAAANATGNNNGAAGAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTTAGTC-CCTGATAGAATNNNNNNNNNNNNNNNNNNNNNNAGTACAA---AAAGTGATGTGTAGATAAANANATATATCGGAAGACNACAACTCNGTNTAGTCCCTGATAGAAGACTGTAGAGAAATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAAT-AAATCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCT-----------GACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTG--GTGTATGGATAGAGAGGGAGATTTaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATCACTGTGG-TGTATGG---------ATAGAG-AGGGAGATT-----------TACTGAGACATTTGTTGT-TTGTGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTTAGTGTA--CTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAGAGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGCG------------ATGTGTGA----GGTAAA-GAAACAT-GT-CAG-----AAGACAA----TCGGAATAGTC----CCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttaTCTGTTTAGTC-CCTGATAGAAT-TGTAGAGAGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTA--GTGTATGGATAGAGAGGGAGATTTGGGGAGGACAATCAG------GTGG--------------------------GGAGACTGTGGTGTA-----CTGAGACATTTGTTGT-GTGTGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGGTGAGTATC--CTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCTAGTTAGGACGAGCCGA-CGG----TGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACGA--GATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGTG----GATAGAGAGGGAGATT-----------------------------TTTGGGAAAGAGCAATAAAGTGGGGAGACT------TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATC--AAGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG---GAGTAATCTTT---GGGCAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCTAG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT--GGATGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAGTGATG----------TGT---A----GATAA---ACACAT--T-CAG-----AAGACGACAACTCGGTATAGTC----
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGT--CTGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1 44444444444 1 222 1 11 333333333333333333333333333333333333333 44444444444 1 11 111 1 1 222 1 1 1 11 11 1 111 222 1 77777777777777 2222 22 11111 33333 333333333 2222 222 1 11 11 222222 222 2222 1 1 11 222222 1 2222 1 1 2222 1 444444444444444444444444444444444444444444444444 1 2 222 11 1 2222
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 1 1 1 5 1 1 22222222222 1 1 2 333 77 3 0 33 555555555555555555555555555555555555555 99999999999 7 3 88 999 6 3 7 3 6 7 555 88 2 3 6 6 3 0 88 88 3 888 7 6 777 3 7 1 7 6 6 11111111111111 6 8888 00 55555 33333 000000000 8888 1 111 5 1 88 1 22 88 22 999999 1 000 1 4444 5 5 88 999999 5 1 3333 1 5 5 1111 5 888888888888888888888888888888888888888888888888 1 5 333 6 3 000 88 5 7 0 8888 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . ... .. . . .. ....................................... ........... . . .. ... . . . . . . ... .. . . . . . . .. .. . ... . . ... . . . . . . .............. . .... .. ..... ..... ......... .... . ... . . .. . .. .. .. ...... . ... . .... . . .. ...... . . .... . . . .... . ................................................ . . ... . . ... .. . . . .... . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 0 0 0 333 55 2 0 88 777777777777777777777777777777777777777 00000000000 3 3 33 000 7 3 3 3 7 3 777 00 0 3 7 7 3 7 33 33 3 333 3 7 333 3 3 0 3 7 7 00000000000000 7 3333 77 33333 33333 000000000 3333 0 555 0 0 00 0 00 55 00 555555 0 555 0 0000 0 0 55 555555 5 0 5555 0 5 0 5555 5 000000000000000000000000000000000000000000000000 0 5 000 0 0 555 00 5 3 7 3333 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTACGGATAGAGAGGGA-GATTT--GG-G--G-GACAA-CAG------GT---------ATAGAG-GGGGAGACT----TGT---GCTGAGACATTTGTTGT-TTGTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTACGGATAGAGAGGGA-GATTT--GG-G--G-GACAA-CAG------GTGGT---TGGATAGAG-GGGGAGACT----TGT---GCTGAGACATTTGTTGT-TTGTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTGTACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGCGATG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTNNNGGGGAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAAT-AAATCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCT-----------GACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTGGTGTATGGATAGAGAGGGA-GATTT--aataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtACGGACAG-TAGGGATGATGT--GGTG--GTGACAAACAGATCACTGTGGTGTATGGATAGAG-AGGGAGATT----TA-----CTGAGACATTTGTTGT-TTGTGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTT-AGTGTACTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAG--AGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGC---G---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaTCTGTTTAGTC-CCTGATAGAATTGTAGAG-AGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTAGTGTATGGATAGAGAGGGA-GATTT--GG-GGAG-GACAATCAG------GT----------------GGGGAGACTGTGGTGT---ACTGAGACATTTGTTGT-GTGTGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGG-TGAGTATCCTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCT--AGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGT--GGATAGAGAGGGA-GATTTTTGG-G--A-AAGAG-CA------------------ATAAAGTGGGGAGACT----TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATCA--AGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG-G-AGTA-ATCTTTGGG--CAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT-GGA-TGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAG---TG---------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----C
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 44444444444 1 222 11 333333333333333333333333 4444444444444444444 2222 11 111 1 1 222 1 1 1 11 11 1 111 222 1 77777777777777 2222 22 11111 33333 333333333 2222 222 1 11 11 222222 222 2222 1 1 11 222222 1 2222 1 1 2222 1 444444444444444444444444444444444444444444444444 1 1 222 11 1 2222
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 1 1 1 5 1 1 22222222222 1 1 2 333 66 999999999999999999999999 1111111111111111111 6666 88 999 6 3 7 3 6 7 555 7 2 3 6 6 3 0 88 88 3 888 7 6 777 3 7 1 7 6 6 55555555555555 6 8888 00 55555 33333 000000000 8888 1 111 5 1 88 1 22 88 22 999999 1 000 1 4444 5 5 88 999999 5 1 3333 1 5 5 1111 5 888888888888888888888888888888888888888888888888 1 5 5 000 88 5 7 0 8888 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . ... .. ........................ ................... .... .. ... . . . . . . ... . . . . . . . .. .. . ... . . ... . . . . . . .............. . .... .. ..... ..... ......... .... . ... . . .. . .. .. .. ...... . ... . .... . . .. ...... . . .... . . . .... . ................................................ . . . ... .. . . . .... . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 0 0 0 333 33 333333333333333333333333 3333333333333333333 0000 33 000 7 3 3 3 7 3 777 3 0 3 7 7 3 7 33 33 3 333 3 7 333 3 3 0 3 7 7 77777777777777 7 3333 77 33333 33333 000000000 3333 0 555 0 0 00 0 00 55 00 555555 0 555 0 0000 0 0 55 555555 5 0 5555 0 5 0 5555 5 000000000000000000000000000000000000000000000000 0 5 5 555 00 5 3 7 3333 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G--GGACAA--AG-T-------GGGGAGACT----TGT---GCTGAGAC-TTTGTTGT--TGTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTACGGATAGAGAGGGAGATTTGGG--GGACAA-CAGGTATAGAG-GGGGAGACT----TGT---GCTGAGACATTTGTTGT-TTGTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAAT-AAATCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCT-----------GACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT-------AC-------T--------GAGACATT----TGT--------------TGTT----TGTGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTT-AGTGTACTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAG--AGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGC---G---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtTCTGTTTAGTC-CCTGATAGAATTGTAGAG-AGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTAGTGTATGGATAGAGAGGGAGATTTGGGGAGGACAATCAGGT-------GGGGAGACTGTGGTGT---ACTGAGACATTTGTTGT-GTGTGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGG-TGAGTATCCTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCT--AGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGT--GGATAGAGAGGGAGATTTTTG--GGA-AA-GAGCAATAAAGTGGGGAGACT----TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATCA--AGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG-G-AGTA-ATCTTTGGG--CAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT-GGA-TGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAG---TG---------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----C
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 44444444444 1 222 55555555555555555555555555555555555555555555555 2 444 11 111 1 1 222 1 1 11 11 1 111 222 1 77777777777777 2222 22 11111 33333 333333333 2222 222 1 11 11 222222 222 2222 1 1 11 222222 1 2222 1 1 2222 1 444444444444444444444444444444444444444444444444 1 1 222 11 1 2222
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 1 1 1 5 1 1 22222222222 1 1 2 333 7 99999999999999999999999999999999999999999999999 6 444 88 999 6 3 7 3 6 7 555 7 6 3 6 6 3 0 88 88 3 888 7 6 777 3 7 1 7 6 6 55555555555555 6 8888 00 55555 33333 000000000 8888 1 111 5 1 88 1 22 88 22 999999 1 000 1 4444 5 5 88 999999 5 1 3333 1 5 5 1111 5 888888888888888888888888888888888888888888888888 1 5 5 000 88 5 7 0 8888 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . ... . ............................................... . ... .. ... . . . . . . ... . . . . . . . .. .. . ... . . ... . . . . . . .............. . .... .. ..... ..... ......... .... . ... . . .. . .. .. .. ...... . ... . .... . . .. ...... . . .... . . . .... . ................................................ . . . ... .. . . . .... . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 0 0 0 333 3 33333333333333333333333333333333333333333333333 7 333 33 000 7 3 3 3 7 3 777 3 7 3 7 7 3 7 33 33 3 333 3 7 333 3 3 0 3 7 7 77777777777777 7 3333 77 33333 33333 000000000 3333 0 555 0 0 00 0 00 55 00 555555 0 555 0 0000 0 0 55 555555 5 0 5555 0 5 0 5555 5 000000000000000000000000000000000000000000000000 0 5 5 555 00 5 3 7 3333 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----T---GTGCTGAGACATTTGTTGTGT-GTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AAGTGGGGAGACT----T---GTGCTGAGAC-TTTGTTGT-T-GTGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAATAAA-TCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCTG-----------ACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--A--------------------------------------------CTGAGACATTTGTTGT-TTGTGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTT-AGTGTACTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAG--AGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGC---G---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtTCTGTTTAGTC-CCTGATAGAATTGTAGAG-AGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTAGTGTATGGATAGAGAGGGAGATTT--GGGGAGGA--------CAATCAGGTGGGGAGACTGTGGT---GTACTGAGACATTTGTTGTGT-GTGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGG-TGAGTATCCTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCT--AGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGT--GGATAGAGAGGGAGATTTTTG----GGAAAGAGCAATA---AAGTGGGGAGACT----TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATC--AAGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG-G-AGTA-ATCTTT--GGGCAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT-GGA-TGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAG---TG---------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----C
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 44444444444 1 222 55555555555555555555555555555555555555555555555 1 11 111 1 1 222 1 1 1 11 11 1 111 222 1 77777777777777 2222 22 11111 33333 333333333 2222 222 1 11 11 222222 222 2222 1 1 11 222222 1 2222 1 1 2222 1 444444444444444444444444444444444444444444444444 1 1 222 11 1 2222
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 1 1 1 5 1 1 22222222222 1 1 2 333 7 99999999999999999999999999999999999999999999999 7 3 3 88 999 6 3 7 3 6 7 555 7 2 3 6 6 3 0 88 88 3 888 7 6 777 3 7 1 7 6 6 55555555555555 6 8888 00 55555 33333 000000000 8888 1 111 5 1 88 1 22 88 22 999999 1 000 1 4444 5 5 88 999999 5 1 3333 1 5 5 1111 5 888888888888888888888888888888888888888888888888 1 5 5 000 88 5 7 0 8888 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . ... . ............................................... . . . .. ... . . . . . . ... . . . . . . . .. .. . ... . . ... . . . . . . .............. . .... .. ..... ..... ......... .... . ... . . .. . .. .. .. ...... . ... . .... . . .. ...... . . .... . . . .... . ................................................ . . . ... .. . . . .... . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 0 0 0 333 3 00000000000000000000000000000000000000000000000 3 7 3 33 000 7 3 3 3 7 3 777 3 0 3 7 7 3 7 33 33 3 333 3 7 333 3 3 0 3 7 7 77777777777777 7 3333 77 33333 33333 000000000 3333 0 555 0 0 00 0 00 55 00 555555 0 555 0 0000 0 0 55 555555 5 0 5555 0 5 0 5555 5 000000000000000000000000000000000000000000000000 0 5 5 555 00 5 3 7 3333 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTGTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAATAAA-TCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCTG-----------ACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--A--------------------------------------------CTGAGACATTTGTTGTTTG-TGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTT-AGTGTACTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAG--AGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGC---G---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtTCTGTTTAGTC-CCTGATAGAATTGTAGAG-AGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTAGTGTATGGATAGAGAGGGAGATTT--GGGGAGGA--------CAATCAGGTGGGGAGACTGTGGTGT---ACTGAGACATTTGTTGTGTG-TGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGG-TGAGTATCCTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCT--AGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGT--GGATAGAGAGGGAGATTTTTG----GGAAAGAGCAATA---AAGTGGGGAGACT----TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATCA--AGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG-G-AGTA-ATCTTTGGG--CAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT-GGA-TGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAG---TG---------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----C
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 44444444444 1 222 55555555555555555555555555555555555555555555555 1 11 111 1 1 222 1 1 1 11 11 1 111 222 1 77777777777777 2222 22 11111 33333 333333333 2222 222 1 11 11 222222 222 2222 1 1 11 222222 1 2222 1 1 2222 1 444444444444444444444444444444444444444444444444 1 1 222 11 1 2222
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 1 1 1 5 1 1 22222222222 1 1 2 333 7 99999999999999999999999999999999999999999999999 7 1 3 88 999 6 3 7 3 6 7 555 7 2 3 6 6 3 0 88 88 3 888 7 6 777 3 7 1 7 6 6 55555555555555 6 8888 00 55555 33333 000000000 8888 1 111 5 1 88 1 22 88 22 999999 1 000 1 4444 5 5 88 999999 5 1 3333 1 5 5 1111 5 888888888888888888888888888888888888888888888888 1 5 5 000 88 5 7 0 8888 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . ... . ............................................... . . . .. ... . . . . . . ... . . . . . . . .. .. . ... . . ... . . . . . . .............. . .... .. ..... ..... ......... .... . ... . . .. . .. .. .. ...... . ... . .... . . .. ...... . . .... . . . .... . ................................................ . . . ... .. . . . .... . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 0 0 0 333 3 00000000000000000000000000000000000000000000000 3 0 3 33 000 7 3 3 3 7 3 777 3 0 3 7 7 3 7 33 33 3 333 3 7 333 3 3 0 3 7 7 77777777777777 7 3333 77 33333 33333 000000000 3333 0 555 0 0 00 0 00 55 00 555555 0 555 0 0000 0 0 55 555555 5 0 5555 0 5 0 5555 5 000000000000000000000000000000000000000000000000 0 5 5 555 00 5 3 7 3333 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAATAAA-TCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCTG-----------ACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--A--------------------------------------------CTGAGACATTTGTTGTTTG-TGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTT-AGTGTACTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAG--AGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGC---G---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtTCTGTTTAGTC-CCTGATAGAATTGTAGAG-AGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTAGTGTATGGATAGAGAGGGAGATTT--GGGGAGGA--------CAATCAGGTGGGGAGACTGTGGTGT---ACTGAGACATTTGTTGTGTG-TGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGG-TGAGTATCCTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCT--AGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGT--GGATAGAGAGGGAGATTTTTG----GGAAAGAGCAATA---AAGTGGGGAGACT----TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATCA--AGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG-G-AGTA-ATCTTTGGG--CAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT-GGA-TGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAG---TG---------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----C
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
blockSeqs : CTA T A A A CTA T A C T GG T A GCT C AA A A T A A A GTGGACATCAG C T G CCG A TTGGGAAAGAGCAATAAAGTGGGGAGACTTGTAGTG A G G AT CTG C T T G C A TG T G C G G C . TT G GGT A G AGC C T G A G G CGATGAACGCGCTT G TTAT AT TTGTG TTATT CAACTCGGT CAGA A ATA . C . G AG . AG AGTAAG G GGA C . . C AT TGCATT A T TAGC C . . T . T . . . GA T A ACAA C AG
blockSeqs : . C . . . . . . T A . . . . . . . . . GGGGAGGACAATCAGGTGGGGAGACTGTGGTGTA . A . . T . . . . . . G . . . . . . . . . . . . C . . A . . . TG . . . TT . ACAG . . . .
blockSeqs : . T . . . . . . T A . . . . . .
blockSeqs : . T . . . . . . . C . . . . . .
blockSeqs : . T . . . . . . . T . . . . . .
blockSeqs : . T . . . . . . . T . . . . . .
blockSeqs : . C . . . . . . . T . . . . . .
blockSeqs : . C . . . . . . . T . . . . . .
blockSeqs : . T . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . A . . . . . .
blockSeqs : . . . . . A . . . . . .
blockSeqs : . . . A . . . . . .
blockSeqs : . A . . . . . .
blockSeqs : T . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
finalCons : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 44444444444 1 222 55555555555555555555555555555555555555555555555 1 11 111 1 1 222 1 1 1 11 11 1 111 222 1 77777777777777 2222 22 11111 33333 333333333 2222 222 1 11 11 222222 222 2222 1 1 11 222222 1 2222 1 1 2222 1 444444444444444444444444444444444444444444444444 1 1 222 11 1 2222
lowQualScore : 666 1 3 3 3 555 0 2 2 8 1 33 2 2 444 2 33 1 1 1 5 1 1 22222222222 1 1 2 333 7 99999999999999999999999999999999999999999999999 7 1 3 88 999 6 3 7 3 6 7 555 7 2 3 6 6 3 0 88 88 3 888 7 6 777 3 7 1 7 6 6 55555555555555 6 8888 00 55555 33333 000000000 8888 1 111 5 1 88 1 22 88 22 999999 1 000 1 4444 5 5 88 999999 5 1 3333 1 5 5 1111 5 888888888888888888888888888888888888888888888888 1 5 5 000 88 5 7 0 8888 6 99
lowQualScore : ... . . . . ... . . . . . .. . . ... . .. . . . . . . ........... . . . ... . ............................................... . . . .. ... . . . . . . ... . . . . . . . .. .. . ... . . ... . . . . . . .............. . .... .. ..... ..... ......... .... . ... . . .. . .. .. .. ...... . ... . .... . . .. ...... . . .... . . . .... . ................................................ . . . ... .. . . . .... . ..
lowQualScore : 444 9 3 1 1 888 7 9 9 0 0 22 4 4 111 7 77 0 0 0 5 0 0 55555555555 0 0 0 333 3 00000000000000000000000000000000000000000000000 3 0 3 33 000 7 3 3 3 7 3 777 3 0 3 7 7 3 7 33 33 3 333 3 7 333 3 3 0 3 7 7 77777777777777 7 3333 77 33333 33333 000000000 3333 0 555 0 0 00 0 00 55 00 555555 0 555 0 0000 0 0 55 555555 5 0 5555 0 5 0 5555 5 000000000000000000000000000000000000000000000000 0 5 5 555 00 5 3 7 3333 7 88
consensus : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
Reference ( family-4839 ) : TTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAGAGTTG---TTGA-C-TC-TGATANTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATCANTGTGTCGGCAGTATATACAGCATTNAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGNATCAAAATAAAATCNTTCCCGGTAAATGTACTGGAAATGTACAACTGTTNAATTGTCTGGTGGACATCAGACATGCTGGAGTTAGAACNGACAGTAGNGATGATGTGGTGGTGACAGACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--G----GGA--------CA---AGGTGGGGAGACT----TGT---GCTGAGACATTTGTTGTNTG-TGA--GTCC--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGAGATGG-T-AGTATACTTCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCCGTTCT--AG--AGAACGAGGCGA-CGGG-TGTGTGAGTACAGTAGGAGTGA-CAGATTGGT-ATAGATGTNAGTACAAAGTGAAGAAGTACAAGAAAGC--TG---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACGA----TCGG-ATAGT----CCCNGAGATATGTGAGATAANGACANATGNNTGAAGACAATGGTTNNCGAAGTAAGAAANGTGGGATCGCNAGAGAGTGTTGTCAGAGAGAGAGCAGCATGATGCATTAGAGAGAGGNAAGTAGCAGGAGGCGNAGAGAAGAAGCACGANCCAAGAAGAGTAGAGAGAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTNTAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGTGACGTGTAGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAAGACTGTAGAGAGATGT
gi|1 : TTGAAAAT---AAAGTACATGTAGA-TCAT-ATTATTGGACAGT-CAGAGTTG---TTGA-C-AC-TGATATTCT--AAC-GCT-ATCCT---GCAGAG-GGTG--AATTGCCAAGT
gi|1 : TGATATCACTGTGTCGGCAATATATACAGCATTCAAACTGAACAAACCAGATAAAGTGAAATATCTTGTATAGGATCAAAATAAA-TCTTTCCCGGTAAATGTACTAGAAATGTACAACTGTTCAATTGTCTG-----------ACATGCTGGAGTTAGAACGGACAGTAGGGATGATGTGGTGGTGACAAACAGATC---ACTGTGGTGTATGGATAGAGAGGGAGATTT--A--------------------------------------------CTGAGACATTTGTTGTTTG-TGG--GTCT--GGATGTCAATCA-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TAAACTGATTGATGAAGGGAGATCTACTGAGATAGTT-AGTGTACTTCTGGGAGCGGGGGCAGATGTCAATGTCA-GTGTGAGGTATAGAGAGTATGACTCGGTG-TTAGGTGTGTCTGTTCTAGAG--AGAACAAGGCGA-CAGG-TGTGTGAATACAGTAAGAGTGA--AGATTGGT-ATAGATGTTAGTACAAAGTGAAGAAGTACAAGAAAGC---G---------ATGTGTGA----GGTAAA-GAAACA-TGT-CAG-----AAGACAA----TCGGAATAGT----CCCTGAG---TGTGAGATAAAGACACATGTCTGAAGACAATAGTTCCCGA------AAACGTG---TCGCAAGAGAATGTTGTCAGAGAGAGAG-AGC--GA------AG-GAGAAGGAAG----AAGAGACGAAGAGAAGAAGCACGAGCCAAGAAGAGTAGAGAAAGAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGTATAGTCACCTGATAGAATTGTAGAGAAGATGTTGTTACTGAGTACAAGAGAAAGT--CGTA-AGATAAAGAAATATATCAGAAGACT----CTCTGTTTAGTCCCTGATAGA--ATTGTAGAGAGATGTaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactctctgtttagtccctgatagaattgtagagagatgttgttactgagtac
gi|1 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgtTCTGTTTAGTC-CCTGATAGAATTGTAGAG-AGATGTTGTTACTGAGTACtgttactgagtac
gi|10 : ttgaaaataaagtacatgtagatcatattattggacagtcagagttgttgacactgatattctaacgctatcctgcagagggtgaattgccaagtaataatgacgggaatataccactgatagctgtatgtgagagaggacatgctagtgtggtagaggagctggtgaaggggtgggagtgatgtcaatctacaggatggtgacggggaatacaccactgatacatgcaacagtaaaatgtttagtggaacattgacctgacttggttactcaggatgttgatatcactgtgtcggcaatatatacagcattcaaactgaacaaaccagataaagtgaaatatcttgtataggatcaaaataaatctttcccggtaaatgtactagaaatgtacaactgttcaattgtctgacatgctggagttagaacggacagtagggatgatgtggtggtgacaaacagatcactgtggtgtatggatagagagggagatttactgagacatttgttgtttgtgggtctggatgtcaatcagttgatacaattttatcataagtctgatgtaagacctctgttgtataaactgattgatgaagggagatctactgagatagttagtgtacttctgggagcgggggcagatgtcaatgtcagtgtgaggtatagagagtatgactcggtgttaggtgtgtctgttctagagagaacaaggcgacaggtgtgtgaatacagtaagagtgaagattggtatagatgttagtacaaagtgaagaagtacaagaaagcgatgtgtgaggtaaagaaacatgtcagaagacaatcggaatagtccctgagtgtgagataaagacacatgtctgaagacaatagttcccgaaaacgtgtcgcaagagaatgttgtcagagagagagagcgaaggagaaggaagaagagacgaagagaagaagcacgagccaagaagagtagagaaagagggcgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttctgtatagtcacctgatagaattgtagagaagatgttgttactgagtacaagagaaagtcgtaagataaagaaatatatcagaagactcTTCAAAAT---AAAGTTCATGTAGA-TCAC-GTT---GGACAGT-CAG--TTA---TTGA-C-TC-TAATATTTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTA
gi|11 : gTTCTAAATCTAAAAGTCCATGTAGAATCAC-AATATTGGACAGT-CAGAGTTG---CCAA-TACC-TAATAAATTGGAACTGAT-ATTCA---TCA
gi|12 : gTTCAAAAT---AAAGTTCATATAGA-TCACAATTATTGG-CAGTAAAGAGTTG---TTGA----C-TGATAATTT--CAT--CT-ATCCA---GCAGCG-AGTG--AAtc
gi|13 : agA-TCAC-ATT---GGACACT-CAGAGTTACTATTGA-C-TT-CTACACGTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTGCCTAGT
gi|14 : CAC-ATTATTGGACAGT-CCGCGTTG---CTGA-C-TC-TAATGTTTT--ATT-GCT-CTCCA---GC
gi|15 : AGATAAAGAAATATATCGGAAGACT----CTCTGTTTAGTCCCTGATAGAA
gi|16 : tgcgG---TTGA-C-TC-TGATATTTT--AAC-GCT-ATCCAGCTGCAGCG-GGTG--AATTGCCTt
gi|17 : tgA-C-TCCTGATATTTT--AAC-GCT-ATCCA---GCTGCGCGGTG--AATTGCCTA
gi|18 : GA-C-TC-TGATATTTT--AAC-GCT-AGGCA---GCAGCG-GGTG--AATTGC
gi|19 : TCAAAAA---AAAGT-CATGTAGA-TCAC-ATTATTGGACAGT-CAat
gi|2 : ggTGATATCAATGTGTCGGCAGTATATACAGCATTAAAACTGAACAAACCAGATAAAGTGAAATATCTTGTACAGTATCAAAATAAAATCATTCCCAGTAAATGTACTGGAAATGTACAACTATTAAATTGTCTGGTGGACATCAGACATGCTGGAGTTAAAACCGACAGTAATGATGATGTGATGGTGACAGACAGATC---AGTGTAGTGTATGGATAGAGAGGGAGATTT--GGGGAGGA--------CAATCAGGTGGGGAGACTGTGGTGT---ACTGAGACATTTGTTGTGTG-TGA--GTCT--GGATGTCAATCT-GTTGATACAATTTTATCATAAGTCTGATGTAAGACCTCTGTTGTA-TACACTGATTGATGAAGGGAGATCTACAGGGAGGG-TGAGTATCCTGCTGGGGGCGGGGGCAGATGTCAATGTCA-GGGTGAGGTATAGAGAGTATGACTCTGTG-TTAGGTGTGTCTGTTCT--AGTTAGGACGAGCCGA-CG----GTGTGAGTACAGTAGGAGTG--CAGATTGGT-TTAGATGTGAGTACAAAGTGAAGAAGTACAAGAAAGCGATGAACGCGCTTATGTGTGATTATGGTAAATGAAACATTGTGCAGTTATTAAGCCGA----ACAG-ATAGTCAGACCCAGAGATATATGA-ATAACG--AGATGAGTAAAAAC--TGGTTAGTAAAGTAAGAAAGGTGGGATCGTCAGAGAG----GTTAGAGA-AGAGCAGCATGATGCATTAGAGAGAGGTAAGTAGCAGGAGGTGCAGAG-AGAAGCA-GAT---AGAAGAG-AGAGAGAGAta
gi|20 : ggttgTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTATTGGACAGT-CAaacga
gi|21 : gC-TGATAATTT--AAC-GCT-ATCCA---GCAGCG-GGTGAAAATTGCC
gi|22 : TTT--AAC-GCT-ATCCA---GCAGCG-GGTG--AATTACCTAGT
gi|23 : aATATTTT--AAC-GCC-ATCCA---GCAGCG-GGTG--AATTGCCTAt
gi|3 : GATGTGGTGCTGACA-ACAGATTCCGACTGTGTTGT--GGATAGAGAGGGAGATTTTTG----GGAAAGAGCAATA---AAGTGGGGAGACT----TGTAGTGCTGAGAC-TTTGTTGTATGGTGAATGTCCTGGGATGC---TCATGTTGATACAGTTTTATCA--AGTCTGATGTAAGTCCTCTGTTGTAGTACA-TGATTG-TGAAGCTGAATCTACAGAGATGG-G-AGTA-ATCTTTGGG--CAGGGGCAGATGTCAATGTTACGGGTGA--TATA-AGATTATGACTCTGTGCTTAGGTGTGGTCGTTCT--AG--AGAACGAGGCGAGCGGGTTGTGTGAGTACAGT-GGA-TGAGCAAATTAGTCATAAA-GTAAGT-CAAAATGAA-AAGTACAA-AAAG---TG---------ATGTGT-A----GATAA---ACACA-T-T-CAG-----AAGACGACAACTCGGTATAGT----C
gi|3 : atgAGTACAA---AAAGTGATGTGTAGATAAACACAT---TCAGAAGACGACAACTCGGTATAGTC--TGATAAAAGACTGTAGAGAAATGTtgataaaagactgtagagaaatgta
gi|5 : atggatgtggtgctgacaacagattccgactgtgttgtggatagagagggagatttttgggaaagagcaataaagtggggagacttgtagtgctgagactttgttgtatggtgaatgtcctgggatgctcatgttgatacagttttatcaagtctgatgtaagtcctctgttgtagtacatgattgtgaagctgaatctacagagatgggagtaatctttgggcaggggcagatgtcaatgttacgggtgatataagattatgactctgtgcttaggtgtggtcgttctagagaacgaggcgagcgggttgtgtgagtacagtggatgagcaaattagtcataaagtaagtcaaaatgaaaTCAAAAT---AAAGTTCATGTAGA-TCAC-ATTAAGGAACAGA-GAGATCTG---TTGA-C-TCTTGATAATTT--AAC-GCT-ATTCA---GCAGCG-GATG--AATTGTCTAa
gi|6 : aTTCAAAAT---AAAGTTCATATAGC-TCAC-ATTAATGGACAGT-CAGCGTTG---TTGA-C-TCTTGATGATTT--AAC-GCT-ATTCA---GCAGCG-GGTG--AATTGCCTc
gi|7 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGAGTTG---TATA-C-TC-TGATAATTG--AAC-TCT-ATCCA---ACATCA-GGTG--AATTGCCTA
gi|8 : gTTCAAACT---AAAGTCCATCTATA-TCAC-AATATTGAACAGT-CAGA-TTG---T--ATC-TC-T-ATAATTG--AAC-TCTAATCCA---ACATCA-GGTG--AATTGCC
gi|9 : gTCAAAAT---GAAGTTCATGTAAA--CAC-ATTATTGGACAGT-CAGAGTTC---TAAA-C-TC-TAATATCTT--AAC-GCT-ATCCA---ACAGCA-GGTT--GATTGCCTc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TAATAAACAGATGTATATAATCATGTTTTGTATATAGTATTTACCTGATATGTCACGTATTAACTTTGAATAACTTTCATTCACGTAGCCCAGAAAACTGTTGAATCACGGCTTAATGTAAATGCCTCCCGAAATCAGTTTATCCACACGTCTGTGATAAACAGTGTAGTATACGGTTATTAAACAATTTGTTACATCACCATAGCACAAATGGGGACCCTATGTGTACAGCAATTTTTTGTTATACACAAGGGAGCGTCGGCCATCTGCGTGCTATCGCTTTTAGTATAAATTGATAATGTCCCCAAAACTACAGTAACATTAGACTCGTTATGGCCACTGACACATTTAATTCAATCCTGCATCGATAGCTGAAAGTAAGAATGAGATATATTGATAG