lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 111 77777777777777777777777777777777777777 111 11 222222 11111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 5555555555 1 11 1 555 22 111 999999999999999999999999999999999999999999 444444444444444444444 11 2222222222222 1111 11111 111 111111 111 1111 111111111 11 33 2222222 111111111 11 1111 11111 222222 111 88888888888888 1 1111111111 222222222222222222222 1111111 111 111
lowQualScore : 111 5 66 44444444444444444444444444444444444444 8888888 66 222 11 111111 8 66666666 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 66 5 0000 5 1 2222222222 5 5 5 7 3 5 5 55 1 888 77 5 5 5 7 5 000 000000000000000000000000000000000000000000 77 555555555555555555555 0 33 77 999 66 66 5 5 0 4 4 4 99 4 55 4 0000000000000 4 5555 4 4 44444 66 4 555 4 66 4 888 5 5 55 55 5 999999 222 5 66 0000 3 77 5 66 0 5 5 22 5 666666666 2 0 66 5 11 66 888 66 5 88 3 0 4 999999 4 4 2 4444444 444444444 9999 4 4 00 3333 0 4 4 66 777 66666 666666 4 55 3 3 000 3 3 66666666666666 666 99999999999 44 3 3 3 6 4444444444 666666666666666666666 5 3 1 3 3 0000000 44 333 88888 3 3 3 555 333 33 3 555 55 4 4 0 66 5 5
lowQualScore : ... . .. ...................................... ....... .. ... .. ...... . ........ ................................................................................................................................................. .. . .... . . .......... . . . . . . . .. . ... .. . . . . . ... .......................................... .. ..................... . .. .. ... .. .. . . . . . . .. . .. . ............. . .... . . ..... .. . ... . .. . ... . . .. .. . ...... ... . .. .... . .. . .. . . . .. . ......... . . .. . .. .. ... .. . .. . . . ...... . . . ....... ......... .... . . .. .... . . . .. ... ..... ...... . .. . . ... . . .............. ... ........... .. . . . . .......... ..................... . . . . . ....... .. ... ..... . . . ... ... .. . ... .. . . . .. . .
lowQualScore : 222 0 99 11111111111111111111111111111111111111 0000000 11 222 66 777777 9 00000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0 6666 0 4 6666666666 0 0 7 3 7 7 0 77 4 111 66 7 7 7 3 7 000 666666666666666666666666666666666666666666 99 333333333333333333333 7 66 99 666 99 99 0 0 2 4 4 4 55 0 55 0 4444444444444 0 0000 0 1 00000 11 4 666 4 11 4 888 0 0 55 44 0 444444 000 0 99 6666 2 55 0 99 1 0 0 99 0 888888888 2 4 99 0 99 99 888 99 0 00 2 1 0 999999 0 0 7 8888888 666666666 8888 4 4 66 9999 8 4 4 11 888 99999 666666 0 55 6 6 000 6 6 33333333333333 444 77777777777 66 3 3 3 8 6666666666 999999999999999999999 2 3 0 3 3 8888888 66 888 33333 3 1 1 444 999 99 1 555 00 7 4 1 11 0 0
consensus : AAACCA-C-T-CGCTAAATA--CCCG---------CCG--GTAC-TAGTA---TACGG-ATGGCTGTAACA---C---C--C---CCC-CCCC-----CT-TT----T---TAAGTAAGTGGTA---------AAT--AAG----C-A-TA--CATTTTT---TCA-TAGT---AC----AT-ATA-TGTG-AAT-TTTAGCTATA-T-CATTGCCT-AATGA---TTGCG---CTA-A-A-TA---GGAGGG-T-T--TTTTAT--C-GATA----AAAG-TGTGAGAAA-ACAC-AAAGA-ATAAA-TC-ATTGNAA-AATA--TTT-GACA---TCTTGTGTTTT-TAG-TCCT-TAGATG-TGATTT-TC---GAC--------------AAC--------------T----------A--AACAATT-A-------------------GAAACCC--ACTTGGATCTA--TGTATCTTT--GAA--T--AGT-CATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-G---NTATCCTCCCTT-GAAAAACGCCAA-T---TTTTCG--ATTC-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAAA--ATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTCTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCTCTTTGCTTATGAAATA-AAGCA----TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAA---CGGC--AAAA----NATTT-T--GAATA-A-A---T-A-ATCATGC----TGTTTTTGT---TT----T------CATGA--TGT-ATCA-T-TC-AA----------ATA---------------C--TG-AACGT-ATGGGCC-AA-TTC-------T--AT---GAG-----TAG-TGA-T-T---TC--TGAC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-T-ACAGAGAATTCA
Reference ( gi|5 ) : AAACCA-C-T-CGCTAAATA--CCTG---------CTG--ATAC-TAGTAAAATACG--ATCGCTGTAACA---C---C--C---CCC-TCCA-----CT-TT----T---TAA---------A---------AAT--AAG----C-A-TA--C---TTT---TCA-TAGT---AC----ATTATA-TATG-AATATTTAGCTATA-CATATTGACT-AATGA---T-GCGGT-CTATCTA-TA---GGA------C--TTTTAT--C-GATA----AAAG-TGTGAGAAA-ACAGAAAAGA-ATAAA-TC-ACTGCAA-AATA--TTT-GACAATCTTTTGTGTTTTTTAG-TCCT-TAGATG-TGGTTT-TC---GAC--------------A----------------T----------A--AACAATT-A-------------------GAAACCC--ACTTGGATCTA--TGTATCTTT--AAA--T--AGT-CATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-G---ATATCCTCCCTT-GAAAAACGCCAA-T---TTTTCG--ATTC-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAAG--ATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TTTTG--ATAAAAGC-AGCAATTG--TA--CC---TG--ACTTG-CCTAATTGCTTATGAAATA-AAGTA----TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAA---CAAC--AAAA----TATTT-T--GAATA-A-A---T-A-ATCAT------TGTT----T---TT----T------CATGA--TGT-ATCA-T-TCAAA----------ATA---------------C--TGAAACGT-ATGGGCC-AA-TTC-------T--AT---GAG-----TAG-TGA-T-T---TC--CGAC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-T-ACAGAGAATTCAAT
gi|3 : AAACCA-A-G-TGCTAAATA--CCCGTATGTAANNNNN--NNNN-NNNNNNNNNNNN--NNNNNNNNNNNN---N---N--N---NNN-TCCT-----CT-TTAAGTT---TAA---------TGGTT-----AAT--AAG----CGA-TC--CATTTTT---TCG-TAGT---AC----AT---A-TATG-TATTTTTAGCTATA-T-CATTG-CT-AA-AACATT-GCG---CTATAAA-TAAGAGGA------T--TTTTTTTCC-GATA----AAAG-TGTGATAAA--CACAAGACATATAAA-TAGATTGAAA-TATT--TTT-GACA---TCTTGTGTTTT-TAG-TCCT-TAGATG-TGATTTGTC---GAC--------------AACACC-----------TAATTAACATAA--AACAATT-A-------------------GAA--CC--ACTTGGATCTA--TGTATCGTT--AAA--T--AGT-CCTCG-ATGTCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGACAA-----TT------TTTT-G---ATATCCTCCCTT-GAAAAACG-CAA-T---TTTTCG--ATTC-TG----AAA-AA--TG-TCTATTTTTTAGAAA-CATTTTTA-GGTC-AATTT-TA-----AAAA--ATA-CAA--TATG----AATAT-AG-T-ACAGGCATTATAA-AAT-TTGATTCTGTTAGTTTTAAATCATATTCTT-------TCTTG--AT-AAAGCAAGCAATTGT-TACTCC---TG--ACTT--CCTCTTTGCTTATG-AATAGAAGCA----TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACAGCA-----AAAAAATGGT----ACCC-AAAATGACGACT-A-CCT-CCG----TTTCCAA-T--GGCAA---CGGC--TAAA-----ATTT-T--GAATA-ACA---TAA-ACCATGCG---TGTT----T---TT----TGTTTTCCATTA--TGTAATCA-T-TCTCA----------ATA---------------C--TG-AACGT-ATGGGTC-AA-TCC-------T--ATAA-AAG-----TAGTTGACT-T---TCTGCAAA-CATCT-GT---TAA--AAT-AA-TGG--TCAT-T-AC
gi|4 : AAACA-C-TTCGCTAAATA--C-TG---------C------AC-T-GTATATAACG--GATGGTGTAACA---C---C--C---CCCATCCT-----CT-TT----T---TAA---------GTAGTGGT--AAT--AAG----C-A-TA--CA--TTTGTATCA-TAGTAA-AC----A-TATACTGTG--AT-TTTTGCTATA-T-CATTG-CT-AAT-A---T-ACGATGCTA--AA-TA---AGAGGGTT-T--TTTTAT--C-GAT-----AAAG-TGTGAT-AA-ACAG---AGA-ATAAA-TG-ATTGAAAGAATT--TTT-GACA----TTTGTGTTTTT----TCCTGTAG-TA-T-TTTT-TCGAGGAC--------------ACCTAATTAAACGATAGT----------A--AACAATT-A-------------------GAAACCCA-ACTTGGATTCA--TGTATCTTTACAAA--TTAGGT-CACGG-ATGCCAA-TTATTC-TTA-GGTG-ATAAGAATTTTTTCTCAAACCAC--TCGGAA-AAGT--TT------TTTT-G---ATACCCT-CCTT-GTAAAATTACAATT---TTTTCG--ATTC-TA---AAAA-AT--TG-TCTATTTTT---AGA-C--TTTTA-GGTC--ATTT-T------AAAA--ATA-CAA--CATG-----ATAT-AG-TAACA--CATTATAA-AATGTTAACT---TTA-CTTTG-ATCATATTCTTGTTCTTGTCTTG--ATAAACG--AGCAATTG--TA--CCAGTTGAAACTTG-CTCTTTTGCTT---AAATA-AAGCA----TTACAAAATG-TCTAGACATTGCTAATC-AAACGACACAA--AGAAAATGGT----A-CC-TACA-G-CAACTAA-CCCGCCG----TTGCC-A-T--GGC-A---CGGC--AAAA----AATTTCT--GAATA-A-AG--T-A-ATCATCTGC--TGTTTTTGT---TT----T------CATGA--TGT-GT-A-TCTCAAA----------TGA---------------C--CG-AACGT-ATGG--C-AACTTC-------T--AT---GAG-----TAG-TGA-T-C---TT--TGA--CCTCT-GT--ATAA--ATCTCA-TGG--TCC--T-ACAGAGAATga
gi|11 : ccAACCA-AGT-CGCTAAATA--CCCGTA-------CTGTAANNN-NNNNNNNNNNNN--NNNNNNNNNNNN---N---N--N---NNN-NCCC-----TC-TT----T---TAA---------GTTAATGGTTAAT--AAG----C-A-TA--CATTTTT---TCG-TAGT---AC----AT-ATA-TGTG-A-T-TTTAGCTATA-T-CATTGCCT-AAACA---TTGCG---CTATATAAGA---GGA------T--TTTTTT--CCGATA----AAAG-TGTGATAAACAC----AAGA-ATAAA-ca
gi|7 : ACCAAC-T-CGCTAAATA--CCGA---------CCT--GTAC-TA-TA---TAGG--ATGGCTGCAACA---C---C--C---ACC---CA-----CC-CT----T---TAAGTAAGTGGTA---------AAT--AAG----C-A-TA--CATATTT---TCAATAGT---AC----AT-ATA-GGTG-A---TTTA-CTATA-T-CATTCGCT-AA--A-----------CTA---A-GA---GGG------T--TTTTAT--T-GATA----AAAG-TTTGAGAAA-ACA----ATA-ATAAA-TC-ATTGCAA-A-TA--TTT-GACA---TCTTGTGTTTT-TAG-TCCT-TAGATG-TGATTT-TC---GACACCTATTTAACAT-A----------------T----------A--AACAATT-G-------------------GAAAACC--AC-TGGATCTA--TGTATCTTT--GAA--T--AGT-CACCG-ATGCCAACTTATTC-TTG-CGTGAATAAGA--TTTTTCTCAAACC-C--TCGGAC-A------T------GTTT-G---GTATCCTCCCTT-GAAAAACGCCAA-----TTTTCG--AATC-TGTAAAAAA-AA--TG-TCTATTTTT---GGA-C-TTTTTA-GGTC-AATTT-T------AAAA--ATA-CAA--CATG----AATATAAG-T-ACA--CCTTA-AA-AAA-TTGATTCTGTTA-CTTTGAATCATATTA---------TTTAG--ATAAAAGC-AGCCGCTG------CC---TG--ACTTG-CCTCTTTGCTTATGAAAT--AAGCA----TTAC-AAATGA-CTAG--ATTGCTAA-TAAAACAGC------A------------------AAAATG-C-ACT-A-AC--CCG----TTTCC-A-T--GGCAA---CGGC--AAAA----AAATT-T--GAA-A-A-A---T-A-ATCATC-----TGTTTTCGT---TT----T------CATGA--TGT-ATCA-T-TC-AA----------ATA---------------C--TG-AACAT-A-GGGCC-AA-TTC-------T--AT---GAG-----TAG-TGA-T-T---TC--TGAC-CCTCT-GT--ATAA--A
gi|6 : ACCAAC-T-CGCTAAATA--CAT----------CT-----AC-TAGTA---TATGG-ATGGTTGTAACA---C---CAAC---CCC-CCCC-----CTCTT----T---TAAGTAAATGGTA---------AAT--AAC----C-A-TA--CAT-TTT---TCA-CAGT---AC----AT-ATA-TGTG-A-T-TTTAGCTATA-T-CATTGCCT-AATGA---TTGCG---CTAA--A-TA---GGAGGGGT-T--TTTTAT--C-GATA----AAAG-TGTGAGAAA--CACAAAA---ATAAG-TC-ATTG-AA-AATA--TTTTGACA---TTTTGTGTTTC--AG-ACCT-TAGATG-TGATTT-TG---GAC--------------AACC-------------T----------ATTAGTAATT-AACATATAAACCATACATCCGAAACCC--ACTTAGATCTA--TGTATCTTT--AAA--T--AGT-CATCG-ATACCAACTAATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-A---TTATCCTCCCTT-GAAAAACGCAAA-A---TTTTCG--ATTC-CG---GAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTT-GGTC-AATCT-T------AAAA--ATA-CAA--CATGCATGAATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCT-----CTT-------------------TGC-ATATGAAATAAA----GC--ATTA------C------AAA---TGG-----G-CT-AGAAT--T-ACT-A-TC--CCG----TTTCC-A-T--GGCAA---CGGC--AAAT----TTTTT-T--GAATA-A-A---T-G-ATCATGC----TATTTTTGT---TT----T------CATGA--TGT-ATCA-T-CC-AA----------ATA---------------C--TG-AACGT-ATGGGCC-AA-TTCTATATGAT--AT---GAG-----TAG-TGA-T-T---TC--TGAC-CCTCT-GT--
gi|1 : A-C-T-CGCTAAATATACCTGG--------CT---ATACATAGTAT--TACGG-ATGGCTGTAACAACCC---C--C---CCC-CCCT-----CC-TT----T---TAAGTAAGTGGTA---------AATTAAAGACTAT-A-TAGTT---TTT---TCA-TAGCCTCAC----AT-ATA--ATGTGATTTTTAGCTAGA-T-CATTGCCT-AATGA---TTGCGCT-CAA---A-TA---AGAGGGGTTT--TTTTAT--C-GATA----AAA--TGTGAGAAACAC----AAGA-AT-AA-TC-ATTG-AA-AATATTTTT-TACA---TCTTGTG--TTGTAGCTCCC-TAGATG-TGATT-------GACCCATAGGCCT----A----------------T----------A--AACAATT-A-------------------GAAACCCAAACTTGGGTCTACCTGTATTTTT---AA--T--AGTCCATCG-ATG-CAACTTATTCATCT-GGTG-AGAGGAG-TTTTTCTCAAACC-C---CG--C-A-----TA------TTTT-GC--CTATCCTCCCTT-G-AAAACG-CAA-TTTATTTTTT--ATTCTTG---AAAACAA--TGTTCTATTTTT---AGA-C-TTTT---GGTCGAATTT-CCTCTCAAAAA--ATA-C-A--CATG----AATATAAGTT-ACA--CATTATAACAAC-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTGGTTA--CC---TG--ATTTGCCCTCTTTGCTTATGACATA-AAGCA----TTAC-AAATGAGCTAGA-ATTGCTATTAAAAACGGC-------AAAAATGGT----A-CCAAAAATG-C-ACT-ACCC--CCGCCTCTTCCC-A-TGAGACAA---CGGCGAGAAA----CATTT-TTGAAATA-A-AAATT-A-ATCATGCTCCGTCTTTTG-T---TT----T------CATGACTCGT-A-CA-T-TC-AA----------ATA---------------C--TGAACGGT-ATGGGCCAAA-TTC-------TGAGT---GAG-----TAG-TGG-A-TGGGTCATGGACGCCTCT-GCGAGTTA--ATTCAATTGGGCTCCTAA-ACAGAGAATTCA
gi|10 : ccaaA-C-T-CGCTAAATA--CCGA---------CCT--GTAC-TAGTA---TACGG-ATGGCTGCAACA---C---C--CA--CCC-ACCC-----CT-TT----TAAGTAAGTGGT----A---------AAT--AAG----C-A-TA--CATATTT---TCA-TAGT---AC----AT-ATA-GGTG-A-T-TTTAGCTATATCAT----------------T-GCG---CTAA--A-TA---AGAGGGT--T--TTTTAT--T-GATA----AAAG-TTTGAGAAATACA----ATA-ATAAA-TC-ATTGCAA-A-TA--TTTTGACA---TCTTGTGTTTT-TAG-TCCT-TAGATG-TGATTT-TC---GACAACCTATTTAACATA----------------T----------A--AACAATT-G-------------------GAAAACC--ACTTGGATCTA--TGTATCTTT--GAA--T--AGT-CACCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TG------TTTT-G---GTATCCTCCCTT-GAAAAACGCCAA-T---TTTTCG--AATC-TGTAAAAAA-AA--TG-TCTATTTTt
gi|8 : ccaA-C-T-CGCTAAATT--CCTA---------GTG---TAC-TAGTA---TGCGG-ATGGCTGTAACA---CCCTC--C---CCC-CCCAACCCCCTCTT----T---TAAGTAAGTGGTA---------AAT--AAG----C-A-TA--CATTTTT---TCA-TAGT---AC----A-TATA-TGTG--AT-TTTAGCTATA-T-CATTGCCT-TATGAT--T-GCG
gi|2 : cca---------CCG--GTAC-TAGTA---TACGGGATGGCTGTAACA---C---C--CTCTCCC-CCCT-----CT-TT----TAAGTAAGTGGT----A---------AATT-AAG----C-AGTA--CATTTTT---TGA-TAGT---ATTTATACTATG-TATGTGATTTTTAGCTATA-T-CATTGCCTTAATGA---TTGCG---CTAAA-A-TA---AGA------GGGTTTTAT--C-AATATAAAAAAGCTGGGAAGAA-ACACTAA-GA-ATAAAATC-AAT-TAA-AATAATTTT-GAAAGTCTT--G-GTTTTATGG-GCCT-TAGATGGTGATTT-TC---GAC--------------AACCAATTAACATA---T----------A--AAAAATTTA-------------------GAAACCC--ACTTG-ATCTA--TGTATCTGT--GAAAGT--AGT-CGTCGGATGTCAACGTATCT-TTGCGGTG-ATAA-A--TTTTTCGCAAATC-CGTTCATAC-A-----TT------TTTTTGTCTAT-TCCTCTCTTCGAGAAACGCCAA-T---TTT-CG--ATTC-TG---GAAA-AAAGTG-TCTATTTTT---AGAGC-TTTTTA-GGTC-AATTT-T------AAAT--ATATCAAGACATG----AATATAA--T-ACA--CATTATAA-AAT-TTGAGTTTTTTA-CTTTGAATCATATTC-T-------TCATGATATAAAAAC-AGCAATTG--TA--CC---TG--A-TTG-CCT--CTGCTTATAAAGTA-AAGAAACATTTAC-AAATGAGCTAGA-AATGCTAATTAAAAAGGCAAAAAAAAAAAATGAT----A--C-AAAATG-C-AGT-A-CC--CCGT---TTTCC-AGT--GGCAC---CG----GAGATTTTTTTTT-T--AAATATA-A---T-A-ATCATGC----TGTTTTTGT---TT----T------CATGA---GT-ATTATT-TCAAA----------ATG---------------CCATG-AACGTGATGGGGC-AA-TTC-------T--ATA--AAG-----TAA-TGA-T-T---TC--TGAC-CCTGTCGT--ACAA--ATTCAA-TGG--TCCT-T-ACAGAAAATTCctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggtgataagatttttctcaaaccctcggtcattttttgctatcctcccttgaaacgccaaattttcgattatgaaaaaatgtctatttttagactttttaggtcaattttaaaaatacaacatgaatataagtacacattataaaatttgattttgttactttgaatcatattttttcttgataaaaacagcaattgtacctgacttgcctctttgcttatgaaataaagcaatacaaatgagctaaaattgcgaatta
gi|9 : tcgcctaaaatGTATGTTT--AAA--C--AGT-CATAT-TTACCAACTTCTTC----------ATAAG----TGTTCTCAAATC-C--TCGGGC-AATTTTTT------TTTT-G---TTATCTTCCCTT-GAAACACGTCAA-T---TTTTTTTTATTC-AG---AAAG-AA--TG-TCTGTTT-----AAA-C-TTTTTTTGGTC-TATCAAT------AAGGCAATG-CAA--GACG----AATATAA-------------------AT-TTGATTC-GTTA-TTTTGAATCATGTTCAT-------CTT-G--ATAAAAAC-AGCCATTG--TA--CA---TG--ACTTG-CCTCTTTGCATATGAAATA-AAGCA----GTAA-AAATACGTCAGA-ATTGCTATTTAAAACTGC-------AAAAATGGT----A-CC-AAAATA-T-ATT-A-CC--TCG----TTTCT-A-T--GGCAA---CGG---AAAA----T-TTT-T--GAATA-A-A---T-A-ATGATAC----TGTTTTTGT---TT----T------CATGA--GTT-ACCA-T-TC-AA----------GTA---------------A--TG-AGCAT-TTGGACC-AG-CTC-------T--AT---GAG-----TAA-TGA-T-T---TC--TGAC-TCCTT-GT--
gi|8 : atgtagctaattgcacaaaccatccaaagcc-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGTC-A-----TT------TTTT-G---CTATCCTCCCTT-GAAA--CGCCAA-A---TTTTCG--ATTA-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAAA--ATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTTTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCTCTTTGCTTATGAAATA-AAGCA----ATAC-AAATGAGCTAAA-ATTGCGAATTA
gi|17 : ccaactcgctaaattcctagtgtactagtatgcggatggctgtaacaccctccccccccaaccccctcttttaagtaagtggtaaataagcatacattttttcatagtacatatatgtgattttagctatatcattgccttatgattgcgctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--TTTTTCTCAAACC-C--TCGGAC-A-----TTTTTTGATTTT-G---ATATTCTCCCTA-GAAAAACGCCAA-
gi|12 : TA-AAGCA----TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----A-C--AAAAT--C-ACT-A-CC--CCG----TT-CC-A-T--TGCAA---CGGC--AAAA----AATTT-T-----CG-A-A---T-A-AT-AT------TAT--------------------------A--CGT-ATCA-T-C--AA----------ATA---------------C--TGAA-CGT-ATGGGCC-AA-TTC-------T--AT---GAG-----TA--CGA---T---TC--TGAC-CCTCT-GT--ATAA--ATTCAA-T-G--TCCT-T-ACAGA-AATTCA
gi|18 : A-AAGCA----TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----t
gi|13 : C------ACAGAATGGTCTATG-TC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAC--AAAA-------TT-T--GAATA-A-A---T-A-ATCATGC----TGTCTTTGT---TT----T------CATGA--TGT-ATCA-T-T-GAA----------ATA---------------C--TG-AACGT-ATGGGCC-AT-TTC-------T--AT---GTG-----TAG-TGA-T-T---TC--TGAC-CCTCT-GT--ATAA--AT
gi|14 : TTT-T--GAATA-A-A---T-A-ATCATGC----TGTT----T---TTCTTTT------CATGA--TGT-ATCA-T-TCAAATGCTGAACTTATATNNNNNNNNNNNNNNN--NNNNNNNN-NNGGAAC-AA-TTC-------T--ATGCGGAG-----TAG--GA-TAT---TC--TGA--CCTCT-GT---T----ATT--A-TTG--TCCT-TAACAGAGAATTCA
gi|15 : actA-A-A---T-GTATCATGTA---TGTT----TAAATT----T------AA--A--TGT-ATCA-T-TCAAA-----------TA---------------C--TGAA-CGT-ATGGGTC-AA-TTC-------T--AT---GAG-----TAG-TGA-T-T---TC--TGAT-CCTCT-GT--ATAA--ATTTAA-TGG--TCCT-T-ACAGAGAATTCAtg
gi|16 : T----T------CATGA--TGC-ATCA-T-TC-AA----------ATA---------------C--TG---------------AA-CTC-------T--AT---GAGTAGGCTAG-TGA-T-T---TC--TGAC-CCCCT-GT--ATAAATATTCAA-TAA--TTCtgtt
gi|19 : GA-T-T---TC--TGAC-CCTCT-AT--ATAA--ATTCAA-TGG--TCCT-T-ACAGAGAATTCAatg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): CATATGATTTTAGCTATATCATTGCCTAATGGTA
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 4444444444444444 11111 222222222 1111111 11 11 1 1 111 111 5555555555555555555555555555 3333333333333333333 11 111 1111111111111 11111 111 111111 1111111 11 222222 1111111 1111 22222222 11 1111111
lowQualScore : 8 4 4 66 3333333333333333 00000 4 777 4 777 4 4 55 0 4 4 999999999 55 0 99 55 4 4 4 4 4 777 55 3333333 3 7 55 3 3 3 77777 5 55 4 77777 8 2 55 4 9999 4 33 0 77777 777 4 5 5 5 0 333 5 333 0 777 5 5 5 5 5 0000000000000000000000000000 66 5 5 8888888888888888888 11 66 000 66 66 4 4 4 4 4 88 3 55 3 6666666666666 3 888 3 3 2 11111 55 4 444 4 55 4 777 4 4 4 4 4 777777 66 4 66 9999 1 55 4 66 4 4 4 4 4444444 66 4 00 66 777 66 4 3 666 3 3 3 1 111111 2222222 4 55 8 4 4 99 2222 4 4 55 00000000 3 3 3 3 3 999 444 44 1 6 44 3 3 3 44 3 3 00 3 44 3 3 3 3 3 0000000 44 77 555 77777 3 2 2 777 2 33 2 2 444 44 3 4 55 4 4
lowQualScore : . . . .. ................ ..... . ... . ... . . .. . . . ......... .. . .. .. . . . . . ... .. ....... . . .. . . . ..... . .. . ..... . . .. . .... . .. . ..... ... . . . . . ... . ... . ... . . . . . ............................ .. . . ................... .. .. ... .. .. . . . . . .. . .. . ............. . ... . . . ..... .. . ... . .. . ... . . . . . ...... .. . .. .... . .. . .. . . . . ....... .. . .. .. ... .. . . ... . . . . ...... ....... . .. . . . .. .... . . .. ........ . . . . . ... ... .. . . .. . . . .. . . .. . .. . . . . . ....... .. .. ... ..... . . . ... . .. . . ... .. . . .. . .
lowQualScore : 9 4 4 11 7777777777777777 00000 0 000 0 000 0 0 55 4 0 0 555555555 55 7 55 55 0 0 0 0 0 000 55 0000000 6 3 99 6 6 6 88888 6 55 0 22222 9 4 00 4 4444 4 77 0 66666 888 4 0 9 0 0 888 0 888 2 111 0 0 0 0 0 0000000000000000000000000000 99 0 0 8888888888888888888 99 99 666 11 11 4 4 0 0 0 66 6 00 6 9999999999999 6 333 6 6 8 77777 55 0 000 0 55 0 888 4 4 4 4 4 222222 11 4 11 4444 9 66 4 11 4 4 4 4 4444444 11 4 66 11 888 11 4 6 444 6 6 6 4 888888 2222222 0 66 0 0 0 55 5555 0 0 55 22222222 6 6 6 3 3 222 333 66 0 7 66 3 3 1 22 1 1 44 1 22 1 1 1 1 1 0000000 22 33 444 77777 1 9 9 999 9 99 9 9 333 66 2 0 55 4 4
consensus : AAACCA-C-T-CGCTAAATA--CCCG---------C-CT-GTA-----C-TAGTA---T-A---CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGANT-TTTAGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTTATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTGNAA-A-ATN--TTT-GACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGAC--------AACCTAT----A--------TA--AA-CAATT-A-------------------GAAACCC--ACTTGGATCTA--TGTATCTTT--AAA--T--AGT-CATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-G-N-TAT-CCTCCCTT-GAAAAACGCCAA-T---TTTTCG--ATTC-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCTCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
Reference ( family-483 ) : AAACCA-C-T-CGCTAAATA--CCCG---------C-CG-GTA-----C-TAGTA---T-A---CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGAAT-TTTAGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAGGAGGG--TTTTTTATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTGNAA-A-ATA--TTT-GACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGAC--------AAC-----------------TA--AA-CAATT-A-------------------GAAACCC--ACTTGGATCTA--TGTATCTTT--GAA--T--AGT-CATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-G-N-TAT-CCTCCCTT-GAAAAACGCCAA-T---TTTTCG--ATTC-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTCTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCTCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAANA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|1 : A-C-T-CGCTAAATATACCTG---------G-CT-ATA-----CATAGTA---TTA---CGG-ATGGCTGTAACAACC--CCC-C-CCCCCTCC-------TTTTAAGT--AAGTGGTAAATTAAAGACT-A-TATAGTTTTT-TC-ATAGCCTCA--C-------AT-ATAATGTGATT-TTTAGCTAGAT-CATTGCCT-AAT----GATTGCG--CTCA--A--A-TAAGAGGGGTTTTTTTATC-GATA----AAA--TGTGAG-AAACAC-AA-GA---AT-AA-TC-ATTGAAA-ATATT--TTT-TACA---TCTTGTG-TTG-T-AGCTCCC-TAG-ATG-TGATT----GACCCATA---GGCCTA--------------TA--AA-CAATT-A-------------------GAAACCCAAACTTGGGTCTACCTGTATTTTT---AA--T--AGTCCATCG-ATG-CAACTTATTCATCT-GGTG-AGAGGAG-TTTTTCTCAAACC-C---CG--C-A-----TA------TTTT-GCC-TAT-CCTCCCTT-G-AAAACG-CAA-TTTATTTTTT--ATTCTTG---AAAACAA--TGTTCTATTTTT---AGA-C-TTTT---GGTCGAATTT-CCTCTCAAAA--AATA-C-A--CATG----AATATAAGTT-ACA--CATTATAACAAC-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTGGTTA--CC---TG--ATTTGCCCTCTTTGCTTATGACATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTATTAAAAACGGC-------AAAAATGGT----A-CCAAAAATG-C-ACT-ACCC--CCGCCTCTTCCC-A-TGAGACAACGGCGAGAAACAT---TTT-T-GAAATA-A-AAATT-A-ATCA--TGC-TCCG-TCTTTTGTTTT-CATGACTCGT-A-CAT-TC--AAAT-AC--TG-AACGGT-ATGGGCCAAA-TTC-------TGAGT--G---AG-----TAG-TGGA-TGGGTCATGG--ACGCCTCT-GCGAGTTA--ATTCAATTGGGCTCCTAAA-CAGAGAATTCA
gi|10 : ccaaA-C-T-CGCTAAATA--CCGA---------C-CT-GTA-----C-TAGTA---T-A---CGG-ATGGCTGCAACA-CC--CAC-C-CACCCC---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TC-ATAGT---A--C-------AT-ATA-GGTGA-T-TTTAGCTATAT-CATTGC----------------G--CT-A--A--A-TAAGAGGG--TTTTTTATT-GATA----AAAG-TTTGAGAAA-TACAA--TA---ATAAA-TC-ATTGCAA-ATAT---TTT-GACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGAC--------AACCTATTTAACATA-----TA--AA-CAATT-G-------------------GAAAACC--ACTTGGATCTA--TGTATCTTT--GAA--T--AGT-CACCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TG------TTTT-G-G-TAT-CCTCCCTT-GAAAAACGCCAA-T---TTTTCG--AATC-TGTAAAAAA-AA--TG-TCTATTTTt
gi|11 : ccaAACCA-AGT-CGCTAAATA--CCCG---------TACT-GTAANNNNN-NNNNN---N-N---NNN-NNNNNNNNNNNN-NN--NNN-N-NCCCTC---------TTTTAAGT--TAATGGTTAAT--AAG--C-A-TACA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTG-AT-TTTAGCTATAT-CATTGCCT-AAA----CATTGCG--CT-A--T--A-TAAGAGGA--TTTTTTTCC-GATA----AAAG-TGTGAT-AAACAC-AA-GA---ATAAA-
gi|12 : TA-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----A--C-AAAAT--C-ACT-A-CC--CCG-----TTCC-A-T--TGCAACGGCAAAAAA------TTT-TCG-AAT--A-A---T---ATTA--TAC--------------------------GT-ATCA--TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TA--C-GA-----TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-T-G--TCCT-TA-CAGA-AATTCA
gi|13 : C------ACAGAATGGTCTATG-TC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAACAAA------ATT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-CTTTGTTTT-CATGA--TGT-ATCAT-TG--AAAT-AC--TG-AAC-GT-ATGGGCC-AT-TTC-------T--AT--G---TG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATt
gi|14 : ------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTCTTTT-CATGA--TGT-ATCAT-TC--AAAT-GC--TG-AAC-TT-AT
gi|14 : actC-AA-TTC-------T--AT--GCGGAG-----TAG---GA-TA--TTCT-G--AC-C-TCT-GT---TA----TT--A-TTG--TCCT-TAACAGAGAATTCAatnnnnnnnnnnnnnnnnnnnnnnnnnggaacaattctatgcggagtaggatattctgacctctgttattattgtccttaacagagaattcatg
gi|15 : actttttgaataaataatcatgctgtttttcttttcatgatgtatcattcaaatgctgaacttatatnnnnnnnnnnnnnnnnnnnnnnnnnggaaA-A-A---T-GTATCA--TGTAT--G-T-TTAAATTT---A-AA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGTC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AT-CCTCT-GT--ATAA--ATTTAA-TGG--TCCT-TA-CAGAGAATTCAtg
gi|16 : TT-CATGA--TGC-ATCAT-TC--AAAT-AC--TG-AAC----------------TC-------T--AT--G---AGTAGGCTAG-T-GA-T---TTCT-G--AC-CCCCT-GT--ATAAATATTCAA-TAA--TTCtgtt
gi|17 : --TTTTTCTCAAACC-C--TCGGAC-A-----TTTTTTGATTTT-G-A-TAT-TCTCCCTA-GAAAAACGCCAA-atg
gi|18 : A-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----
gi|19 : -GA-T---TTCT-G--AC-CCTCT-AT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|2 : ---------C-CG-GTA-----C-TAGTA---T-A---CGGGATGGCTGTAACA-CC--CTCTC-CCCCCTC--------TTTTAAGT--AAGTGGTAAATT-AAG--C-AGTACA-TTTTT-TG-ATAGT---A--TTTATACTAT-GTA-TGTGATT-TTTAGCTATAT-CATTGCCTTAAT----GATTGCG--CT-A--A--AATAAGAGGG--TTTT--ATC-AATATAAAAAAGCTGGGAAGAAACACTAA-GA---ATAAAATC-AAT-TAA-A-ATAATTTT-GAAAG--TCTTG-GTTTTAT-GG-GCCT-TAG-ATGGTGATTT-TCGAC--------AACCAATTAACATA------TA--AA-AAATTTA-------------------GAAACCC--ACTTG-ATCTA--TGTATCTGT--GAAAGT--AGT-CGTCGGATGTCAACGTATCT-TTGCGGTG-ATAA-A--TTTTTCGCAAATC-CGTTCATAC-A-----TT------TTTTTG-TCTATTCCTCTCTTCGAGAAACGCCAA-T---TTT-CG--ATTC-TG---GAAA-AAAGTG-TCTATTTTT---AGAGC-TTTTTA-GGTC-AATTT-T------AAA--TATATCAAGACATG----AATATAA--T-ACA--CATTATAA-AAT-TTGAGTTTTTTA-CTTTGAATCATATTC-T-------TCATGATATAAAAAC-AGCAATTG--TA--CC---TG--A-TTG-CCTC--TGCTTATAAAGTA-AAGAAACATTTAC-AAATGAGCTAGA-AATGCTAATTAAAAAGGCAAAAAAAAAAAATGAT----A--C-AAAATG-C-AGT-A-CC--CCGT---TTTCC-AGT--GGCACCGG----AGATTTTTTTTT-T-A-AATATA-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA---GT-ATTAT-TTCAAAAT-GCCATG-AAC-GTGATGGGGC-AA-TTC-------T--ATA-A---AG-----TAA-T-GA-T---TTCT-G--AC-CCTGTCGT--ACAA--ATTCAA-TGG--TCCT-TA-CAGAAAATTCtg
gi|20 : tcgcctaaaat-ATA-TG---AT-TTTAGCTATAT-CATTGCCT-AAT----GGT
gi|3 : cAAACCA-A-G-TGCTAAATA--CCCGTATGTAANNN-NN-NNN-----N-NNNNN---N-N---NNN-NNNNNNNNNNNN-NN--NNN-N-NNTCCT---------CTTTAAGTTTAA-TGGTTAAT--AAG--CGA-TCCA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGT-ATT-TTTAGCTATAT-CATTGCTA-AAA----CATTGCG--CT-ATAA--A-TAAGAGGA--TTTTTTTTCCGATA----AAAG-TGTGATAAA-CACAA--GACATATAAA-TAGATTGAAA-T-ATT--TTT-GACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTTGTCGAC--------AACACCTAATTAACA-----TA--AAACAATT-A-------------------GAA--CC--ACTTGGATCTA--TGTATCGTT--AAA--T--AGT-CCTCG-ATGTCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGACAA-----TT------TTTT-G-A-TAT-CCTCCCTT-GAAAAACG-CAA-T---TTTTCG--ATTC-TG----AAA-AA--TG-TCTATTTTTTAGAAA-CATTTTTA-GGTC-AATTT-TA-----AAA--AATA-CAA--TATG----AATAT-AG-T-ACAGGCATTATAA-AAT-TTGATTCTGTTAGTTTTAAATCATATTCTT-------TCTTG--ATAAAGCA-AGCAATTGT-TACTCC---TG--ACTT--CCTCTTTGCTTATG-AATAGAAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACAGCA-----AAAAAATGGT----ACCC-AAAATGACGACT-A-CCT-CCG----TTTCCAA-T--GGCAACGGCTAAA-A------TTT-T-G-AATA-ACA---TAA-ACCA--TGCGT--GTT-TTTTGTTTTCCATTA--TGTAATCAT-TCT-CAAT-AC--TG-AAC-GT-ATGGGTC-AA-TCC-------T--ATAAA---AG-----TAGTT-GACT---TTCT-GCAAA-CATCT-GT---TAA--AAT-AA-TGG--TCAT-TA-a
gi|4 : AAACA-C-TTCGCTAAATA--CT----------------GCA-----C-T-GTA---T-ATAACGG-ATGG-TGTAACA-CC--CCC-CATCCTCT---------TTTTAAGT--A-GTGGTAA-T--AAG--C-A-TACA-TTTGTATC-ATAGT---AAAC-------AT-ATACTGTGATT-TTT-GCTATAT-CATTG-CT-AATATACGAT---G--CT-A--A--A-TAAGAGGGT-TTTTTTATC-GAT-----AAAG-TGTGATAA---ACAGA-GA---ATAAA-TG-ATTGAAAGA-ATT--TTT-GACA---T-TTGTGTTTT-T----TCCTGTAGTAT--T--TTT-TCGAG--------GACACCTAATTAAACGATAGTA--AA-CAATT-A-------------------GAAACCCA-ACTTGGATTCA--TGTATCTTTACAAA--TTAGGT-CACGG-ATGCCAA-TTATTC-TTA-GGTG-ATAAGAATTTTTTCTCAAACCAC--TCGGAA-AAGT--TT------TTTT-G-A-TAC-CCT-CCTT-GTAAAATTACAATT---TTTTCG--ATTC-TA---AAAA-AT--TG-TCTATTTTT---AGA-C--TTTTA-GGTC--ATTT-T------AAA--AATA-CAA--CATG-----ATAT-AG-TAACA--CATTATAA-AATGTTAACT---TTA-CTTTG-ATCATATTCTTGTTCTTGTCTTG--AT--AAACGAGCAATTG--TA--CCAGTTGAAACTTG-CTCTTTTGCTT---AAATA-AAG---CA-TTACAAAATG-TCTAGACATTGCTAATC-AAACGACACAA--AGAAAATGGT----A-CC-TACA-G-CAACTAA-CCCGCCG----TTGCC-A-T--GGC-ACGGCAAAAAA------TTTCT-G-AATA-A-AG--T-A-ATCATCTGC-T--G-T-TTTTGTTTT-CATGA--TGT-GT-ATCTC--AAATGAC--CG-AAC-GT-ATGG--C-AACTTC-------T--AT--G---AG-----TAG-T-GA-T---CTTT-G--A--CCTCT-GT--ATAA--ATCTCA-TGG--TCC--TA-CAGAGAATga
gi|5 : ccAAACCA-C-T-CGCTAAATA--CCTG---------C-TG-ATA-----C-TAGTAAAAT-A---CG--ATCGCTGTAACA-CC--CCC-C-TCCACT---------TTTTAA-----------AAAT--AAG--C-A-TAC----TTT-TC-ATAGT---A--C-------ATTATA-TATGAATATTTAGCTATACATATTGACT-AAT----GAT-GCGGTCT-A--TCTA-TAGGA------CTTTTATC-GATA----AAAG-TGTGAGAAAACAGAAAAGA---ATAAA-TC-ACTGCAA-A-ATA--TTT-GACAATCTTTTGTGTTTT-TTAG-TCCT-TAG-ATG-TGGTTT-TCGAC--------A-------------------TA--AA-CAATT-A-------------------GAAACCC--ACTTGGATCTA--TGTATCTTT--AAA--T--AGT-CATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-G-A-TAT-CCTCCCTT-GAAAAACGCCAA-T---TTTTCG--ATTC-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--GATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TTTTG--ATAAAAGC-AGCAATTG--TA--CC---TG--ACTTG-CCTAATTGCTTATGAAATA-AAG---TA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACAACAAAATA------TTT-T-G-AATA-A-A---T-A-ATCA--T---T--G-T-T----TTTT-CATGA--TGT-ATCAT-TCA-AAAT-AC--TGAAAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCC-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCAca
gi|6 : ACCAAC-T-CGCTAAATA--C--A---------T-C---TA-----C-TAGTA---T-A---TGG-ATGGTTGTAACA-CCAACCC-C-CCCCCTC--------TTTTAAGT--AAATGGTAAAT--AAC--C-A-TACA-TTTTT--C-ACAGT---A--C-------AT-ATA-TGTGA-T-TTTAGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAGGAGGGG-TTTTTTATC-GATA----AAAG-TGTGAGAAA-CACAAA--A---ATAAG-TC-ATTG-AA-A-ATA--TTTTGACA---TTTTGTGTTTC---AG-ACCT-TAG-ATG-TGATTT-TGGAC--------AACC----------------TATTAG-TAATT-AACATATAAACCATACATCCGAAACCC--ACTTAGATCTA--TGTATCTTT--AAA--T--AGT-CATCG-ATACCAACTAATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-A-T-TAT-CCTCCCTT-GAAAAACGCAAA-A---TTTTCG--ATTC-CG---GAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTT-GGTC-AATCT-T------AAA--AATA-CAA--CATGCATGAATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCTCTTT---------------G---CA-T------ATGAAATAAA----GC--ATTA------C------AAA---TGG-----G-CT-AGAAT--T-ACT-A-TC--CCG----TTTCC-A-T--GGCAACGGCAAATTT------TTT-T-G-AATA-A-A---T-G-ATCA--TGC-T--A-T-TTTTGTTTT-CATGA--TGT-ATCAT-CC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTCTATATGAT--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--at
gi|7 : ACCAAC-T-CGCTAAATA--CCGA---------C-CT-GTA-----C-TA-TA---T-A----GG-ATGGCTGCAACA-CC--CAC-C-CACCCT---------TT--AAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TCAATAGT---A--C-------AT-ATA-GGTGA---TTTA-CTATAT-CATT-----------------CG--CT-A--A--ACTAAGAGGG---TTTTTATT-GATA----AAAG-TTTGAGAAAAC---AA-TA---ATAAA-TC-ATTGC-A-A-ATA--TTT-GACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGACACCTATTTAACATA--------------TA--AA-CAATT-G-------------------GAAAACC--AC-TGGATCTA--TGTATCTTT--GAA--T--AGT-CACCG-ATGCCAACTTATTC-TTG-CGTGAATAAGA--TTTTTCTCAAACC-C--TCGGAC-A------T------GTTT-G-G-TAT-CCTCCCTT-GAAAAACGCCAA-----TTTTCG--AATC-TGTAAAAAA-AA--TG-TCTATTTTT---GGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAG-T-ACA--CCTTA-AA-AAA-TTGATTCTGTTA-CTTTGAATCATATTATT-------TA--G--ATAAAAGC-AGCCGCTG------CC---TG--ACTTG-CCTCTTTGCTTATGAAAT--AAG---CA-TTAC-AAATGA-CTAG--ATTGCTAA-TAAAACAGC------A------------------AAAATG-C-ACT-A-AC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------ATT-T-G-AA-A-A-A---T-A-ATCA--T-C-T--G-T-TTTCGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-AT-A-GGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--A
gi|8 : A-C-T-CGCTAAATT--CCTA------------GTGTA-----C-TAGTA---T-G---CGG-ATGGCTGTAACA-CC--CTC-C-CCCCCCAACCCCCTCTTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTG-AT-TTTAGCTATAT-CATTGCCT-TAT----GATTGCG--CT-A--A--
gi|8 : cca-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGTC-A-----TT------TTTT-G-C-TAT-CCTCCCTT-GAAA--CGCCAA-A---TTTTCG--ATTA-TG---AAAA-AA--TG-TCTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAG-T-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTTTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTG-CCTCTTTGCTTATGAAATA-AAG---CA-ATAC-AAATGAGCTAAA-ATTGCGAATTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggtgataagatttttctcaaaccctcggtcattttttgctatcctcccttgaaacgccaaattttcgattatgaaaaaatgtctatttttagactttttaggtcaattttaaaaatacaacatgaatataagtacacattataaaatttgattttgttactttgaatcatattttttcttgataaaaacagcaattgtacctgacttgcctctttgcttatgaaataaagcaatacaaatgagctaaaattgcgaatta
gi|9 : ccaactcgctaaattcctagtgtactagtatgcggatggctgtaacaccctccccccccaaccccctcttttaagtaagtggtaaataagcatacattttttcatagtacatatatgtgattttagctatatcattgccttatgattgcgctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGTTT--AAA--C--AGT-CATAT-TTACCAACTTCTTC----------ATAAG----TGTTCTCAAATC-C--TCGGGC-AATTTTTT------TTTT-G-T-TAT-CTTCCCTT-GAAACACGTCAA-T---TTTTTTTTATTC-AG---AAAG-AA--TG-TCTGTTT-----AAA-C-TTTTTTTGGTC-TATCAAT------AAGGCAATG-CAA--GACG----AATATAA-------------------AT-TTGATTC-GTTA-TTTTGAATCATGTTCAT--------CTTG--ATAAAAAC-AGCCATTG--TA--CA---TG--ACTTG-CCTCTTTGCATATGAAATA-AAG---CA-GTAA-AAATACGTCAGA-ATTGCTATTTAAAACTGC-------AAAAATGGT----A-CC-AAAATA-T-ATT-A-CC--TCG----TTTCT-A-T--GGCAACGG-AAAAT-------TTT-T-G-AATA-A-A---T-A-ATGA--TAC-T--G-T-TTTTGTTTT-CATGA--GTT-ACCAT-TC--AAGT-AA--TG-AGC-AT-TTGGACC-AG-CTC-------T--AT--G---AG-----TAA-T-GA-T---TTCT-G--AC-TCCTT-GT--
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222 222222222 1111111 2 11 1 111 111 1 111 111 11111111111111111111111111111111111111111111 11 1111111111111 111 111111 1111111 11 222222 1111111 1111 111111 11 1111111
lowQualScore : 8 4 4 4 55 888888888888888888888 777 4 4 4 4 55 0 4 4 999999999 55 0 99 55 4 4 4 4 4 777 55 3333333 4 7 2 3 3 444 77777 5 55 4 77777 8 00 4 4 9999 4 0 8 2 222 777 4 5 5 1 999 5 333 0 333 5 5 5 5 5 888 00000000000000000000000000000000000000000000 5 5 5 5 888 11 66 66 66 66 4 4 4 4 4 88 3 55 3 6666666666666 3 88 3 3 666 1 4 55 4 444 4 55 4 777 4 4 4 4 4 777777 66 4 66 9999 1 1 8 66 4 4 1 4 4444444 66 4 00 66 777 66 4 3 666 3 3 3 1 111111 2222222 4 55 8 4 4 99 2222 4 4 55 2 666666 3 3 3 3 3 999 444 44 1 6 44 3 3 3 44 3 3 00 3 44 3 3 3 3 3 0000000 44 77 555 77777 3 2 2 777 2 33 2 2 444 44 3 4 55 4 4
lowQualScore : . . . . .. ..................... ... . . . . .. . . . ......... .. . .. .. . . . . . ... .. ....... . . . . . ... ..... . .. . ..... . .. . . .... . . . . ... ... . . . . ... . ... . ... . . . . . ... ............................................ . . . . ... .. .. .. .. .. . . . . . .. . .. . ............. . .. . . ... . . .. . ... . .. . ... . . . . . ...... .. . .. .... . . . .. . . . . ....... .. . .. .. ... .. . . ... . . . . ...... ....... . .. . . . .. .... . . .. . ...... . . . . . ... ... .. . . .. . . . .. . . .. . .. . . . . . ....... .. .. ... ..... . . . ... . .. . . ... .. . . .. . .
lowQualScore : 9 0 0 0 55 000000000000000000000 000 0 0 0 0 55 4 0 0 555555555 55 7 55 55 0 0 0 0 0 000 55 0000000 0 3 3 6 6 222 88888 6 55 0 22222 9 66 4 4 4444 4 1 2 0 999 888 4 0 0 0 222 6 888 2 222 0 0 0 0 0 888 99999999999999999999999999999999999999999999 0 0 0 0 888 99 99 11 11 11 4 4 0 0 0 66 6 00 6 9999999999999 6 33 6 6 444 1 0 55 0 000 0 55 0 888 4 4 4 4 4 222222 11 4 11 4444 9 1 9 11 4 4 4 4 4444444 11 4 66 11 888 11 4 6 444 6 6 6 4 888888 2222222 0 66 0 0 0 55 5555 0 0 55 2 888888 6 6 6 3 3 222 333 66 0 7 66 3 3 1 22 1 1 44 1 22 1 1 1 1 1 0000000 22 33 444 77777 1 9 9 999 9 99 9 9 333 66 2 0 55 4 4
consensus : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTTAGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-A-TTGAAA-ATAT-TTTGACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
Reference ( family-483 ) : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGANT-TTTAGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-A-TTGNAA-A-ATNTTTGACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|1 : A-C-T-CGC-TAAATATACCT-GG-CTATA---------CATAGTA---TTA-CGG-ATGGCTGTAACAACC--CCC-C-CCCCCTCC-------TTTTAAGT--AAGTGGTAAATTAAAGACT-A-TATAGTTTTT-TC-ATAGCCTCA--C-------AT-ATAATGTGATT-TTTAGCTAGAT-CATTGCCT-AAT----GATTGCG--CTCA--A--A-TAAGAGGGGTTTTTTT-ATC-GATA----AAA--TGTGAGAAA-CACAA--GA---ATAA--TC-A-TTGAAA-ATATTTTTTACA---TCTTGTGTTGT---AGCTCCC-TAG-ATG-TGATT----GA---C--C--CA-----T-------AGGCC-----T-------------A-TAAA-CAAT-T-A---GAAACCCAAACTTGGGTCTACCTGTATTTTTA--A---T--AGTCCATCG-ATGC-AACTTATTCATCT-GGTG-AGAGGAG-TTTTTCTCAAACC-C---CG--C-A-----TA------TTTT-GCCTAT-CCTCCCTT-GAAAA-CGCAATTTATTTTT-T---ATTCTTG---AAAACAA--TGTTCTATTTTT---AGA-C-TTTT---GGTCGAATTT-CCTCTCAAAA--AATA-CA---CATG----AATATAAGTTACA--CATTATAACAAC-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTGGTTA--CC---TG--ATTTGCCCTCTTTGCTTATGACATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTATTAAAAACGGC-------AAAAATGGT----A-CCAAAAATG-C-ACT-ACCC--CCGCCTCTTCCC-A-TGAGACAACGGCGAGAAACAT---TTT-T-GAAATA-A-AAATT-A-ATCA--TGC-TCCG-TCTTTTGTTTT-CATGACTCGT-A-CAT-TC--AAAT-AC--TG-AACGGT-ATGGGCCAAA-TTC-------TGAGT--G---AG-----TAG-TGGA-TGGGTCATGG--ACGCCTCT-GCGAGTTA--ATTCAATTGGGCTCCTAAA-CAGAGAATTCA
gi|10 : ccaaA-C-T-CGC-TAAATA--CCG-AC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGCAACA-CC--CAC-C-CACCCC---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TC-ATAGT---A--C-------AT-ATA-GGTGA-T-TTTAGCTATAT-CATTGC----------------G--CT-A--A--A-TAAGAGGG--TTTTTT-ATT-GATA----AAAG-TTTGAGAAA-TACAA--TA---ATAAA-TC-A-TTGCAA-ATAT-TTTGACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------TTTAACAT------A-TAAA-CAAT-T-G---GAAAACCA--CTTGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TG------TTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTt
gi|11 : ccaAACCA-AGT-CGC-TAAATA--CCC-GTACTGTAANNNN----N-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NCCCTC---------TTTTAAGT--TAATGGTTAAT--AAG--C-A-TACA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTGA-T-TTTAGCTATAT-CATTGCCT-AAA----CATTGCG--CT-A--T--A-TAAGAGGA--TTTTTT-TCC-GATA----AAAG-TGTGAT-AAACAC-AA-GA---ATAAA-
gi|12 : TA-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----A--C-AAAAT--C-ACT-A-CC--CCG-----TTCC-A-T--TGCAACGGCAAAAAA------TTT-TCG-AAT--A-A---T---ATTA--TAC--------------------------GT-ATCA--TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TA--C-GA-----TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-T-G--TCCT-TA-CAGA-AATTCA
gi|13 : C------ACAGAATGGTCTATG-TC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAACAAA------ATT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-CTTTGTTTT-CATGA--TGT-ATCAT-TG--AAAT-AC--TG-AAC-GT-ATGGGCC-AT-TTC-------T--AT--G---TG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATt
gi|14 : ------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTCTTTT-CATGA--TGT-ATCAT-TC--AAAT-GC--TG-AAC-TT-AT
gi|14 : actC-AA-TTC-------T--AT--GCGGAG-----TAG---GA-TA--TTCT-G--AC-C-TCT-GT---TA----TT--A-TTG--TCCT-TAACAGAGAATTCAatnnnnnnnnnnnnnnnnnnnnnnnnnggaacaattctatgcggagtaggatattctgacctctgttattattgtccttaacagagaattcatg
gi|15 : actttttgaataaataatcatgctgtttttcttttcatgatgtatcattcaaatgctgaacttatatnnnnnnnnnnnnnnnnnnnnnnnnnggaaA-A-A---T-GTATCA--TGTAT--G-T-TTAAATTT---A-AA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGTC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AT-CCTCT-GT--ATAA--ATTTAA-TGG--TCCT-TA-CAGAGAATTCAtg
gi|16 : TT-CATGA--TGC-ATCAT-TC--AAAT-AC--TG-AAC----------------TC-------T--AT--G---AGTAGGCTAG-T-GA-T---TTCT-G--AC-CCCCT-GT--ATAAATATTCAA-TAA--TTCtgtt
gi|17 : --TTTTTCTCAAACC-C--TCGGAC-A-----TTTTTTGATTTT-GA-TAT-TCTCCCTA-GAAAAACGCCA---Aatg
gi|18 : A-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----
gi|19 : -GA-T---TTCT-G--AC-CCTCT-AT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|2 : -T-CGCCTAAA-A--TCC-G----GTA---------C-TAGTA---T-A-CGGGATGGCTGTAACA-CC--CTCTC-CCCCCTC--------TTTTAAGT--AAGTGGTAAATT-AAG--C-AGTACA-TTTTT-TG-ATAGT---A--TTTATACTAT-GTA-TGTGATT-TTTAGCTATAT-CATTGCCTTAAT----GATTGCG--CT-A--A--AATAAGAGGG--TTTT---ATC-AATATAAAAAAGCTGGGAAGAAACACTAA-GA---ATAAAATC-AATTAAAATA-AT-TTTGAAAG--TCTTG-GTTTTAT-GG-GCCT-TAG-ATGGTGATTT-TCGA---CAAC--CAATTAAC-------A---------T-------------A-TAAA-AAAT-TTA---GAAACCCA--CTTG-ATCTA--TGTATCTGTG--AAAGT--AGTC-GTCGGATGTCAACGTATCT-TTGCGGTG-ATAA-A--TTTTTCGCAAATC-CGTTCATAC-A-----TT------TTTTTGTCTATTCCTCTCTTCGAGAAACGCCA---ATTTT--CG--ATTCT-G---GAAA-AAAGTGT-CTATTTTT---AGAGC-TTTTTA-GGTC-AATTT-T------AAA--TATATCAAGACATG----AATATAA-T-ACA--CATTATAA-AAT-TTGAGTTTTTTA-CTTTGAATCATATTC-T-------TCATGATATAAAAAC-AGCAATTG--TA--CC---TG--A-TTGCC-TC--TGCTTATAAAGTA-AAGAAACATTTAC-AAATGAGCTAGA-AATGCTAATTAAAAAGGCAAAAAAAAAAAATGAT----A--C-AAAATG-C-AGT-A-CC--CCGT---TTTCC-AGT--GGCACCGG----AGATTTTTTTTT-T-A-AATATA-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA---GT-ATTAT-TTCAAAAT-GCCATG-AAC-GTGATGGGGC-AA-TTC-------T--ATA-A---AG-----TAA-T-GA-T---TTCT-G--AC-CCTGTCGT--ACAA--ATTCAA-TGG--TCCT-TA-CAGAAAATTCtg
gi|20 : A-TATGA-T-TTTAGCTATAT-CATTGCCT-AAT----GGT
gi|3 : cAAACCA-A-G-TGC-TAAATA--CCC-GT-ATGTAANNNNNNNNN-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NNTCCT---------CTTTAAGTTTAA-TGGTTAAT--AAG--CGA-TCCA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGT-ATT-TTTAGCTATAT-CATTGCTA-AAA----CATTGCG--CT-ATAA--A-TAAGAGGA--TTTTTT-TTCCGATA----AAAG-TGTGATAAA-CACAA--GACATATAAA-TAGA-TTGAAA-T-ATTTTTGACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTTGTCGA---CAACACC------T-------AATTAA----C-------------A-TAAAACAAT-T-A---GAA--CCA--CTTGGATCTA--TGTATCGTTA--AA--T--AGTC-CTCG-ATGTCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGACAA-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACG-CA---ATTTTT-CG--ATTCT-G----AAA-AA--TGT-CTATTTTTTAGAAA-CATTTTTA-GGTC-AATTT-TA-----AAA--AATA-CAA--TATG----AATAT-AGT-ACAGGCATTATAA-AAT-TTGATTCTGTTAGTTTTAAATCATATTCTT-------TCTTG--ATAAAGCA-AGCAATTGT-TACTCC---TG--ACTT-CC-TCTTTGCTTATG-AATAGAAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACAGCA-----AAAAAATGGT----ACCC-AAAATGACGACT-A-CCT-CCG----TTTCCAA-T--GGCAACGGC-TAAAA------TTT-T-G-AATA-ACA---TAA-ACCA--TGCGT--GTT-TTTTGTTTTCCATTA--TGTAATCAT-TCT-CAAT-AC--TG-AAC-GT-ATGGGTC-AA-TCC-------T--ATAAA---AG-----TAGTT-GACT---TTCT-GCAAA-CATCT-GT---TAA--AAT-AA-TGG--TCAT-TA-a
gi|4 : AAACA-C-TTCGC-TAAATA--CT--GCACTGTA--------------TA---T-AACGG-ATGG-TGTAACA-CC--CCC-CATCCTCT---------TTTTAAGT--A-GTGGTAA-T--AAG--C-A-TACA-TTTGTATC-ATAGT---AAAC-------AT-ATACTGTGATT-TTT-GCTATAT-CATTGC-T-AATATACGAT---G--CT-A--A--A-TAAGAGGG--TTTTTTTATC-GATA----AA-G-TGTGATAAA---CAGA-GA---ATAAA-TG-A-TTGAAAGA-ATTTTTGACA---T-TTGTGTTTT-T----TCCTGTAGTAT--T--TTT-TCGAGGACA-C--C------T-------AATTAAACGAT-------------AGTAAA-CAAT-T-A---GAAACCCAA-CTTGGATTCA--TGTATCTTTACAAA--TTAGGTC-ACGG-ATGCCAA-TTATTC-TTA-GGTG-ATAAGAATTTTTTCTCAAACCAC--TCGGAA-AAGT--TT------TTTT-GA-TAC-CCTCC-TT-GTAAAATTACA---ATTTTTTCG--ATTCT-A---AAAA-AT--TGT-CTATTTTT---AGA-C--TTTTA-GGTC--ATTT-T------AAA--AATA-CAA--CATG-----ATAT-AGTAACA--CATTATAA-AATGTTAACT---TTA-CTTTG-ATCATATTCTTGTTCTTGTCTTG--AT--AAACGAGCAATTG--TA--CCAGTTGAAACTTGCT-CTTTTGCTT---AAATA-AAG---CA-TTACAAAATG-TCTAGACATTGCTAATC-AAACGACACAA--AGAAAATGGT----A-CC-TACA-G-CAACTAA-CCCGCCG----TTGCC-A-T--GGC-ACGGCAAAAAA------TTTCT-G-AATA-A-AG--T-A-ATCATCTGC-T--G-T-TTTTGTTTT-CATGA--TGT-GT-ATCTC--AAATGAC--CG-AAC-GT-ATGG--C-AACTTC-------T--AT--G---AG-----TAG-T-GA-T---CTTT-G--A--CCTCT-GT--ATAA--ATCTCA-TGG--TCC--TA-CAGAGAATga
gi|5 : ccAAACCA-C-T-CGC-TAAATA--CCT-GC-TGATA---------C-TAGTAAAAT-A-CG--ATCGCTGTAACA-CC--CCC-C-TCCACT---------TTTTAA-----------AAAT--AAG--C-A-TAC----TTT-TC-ATAGT---A--C-------ATTATA-TATGAATATTTAGCTATACATATTGACT-AAT----GAT-GCGGTCT-A--TCTA-TAGGA------CTTTT-ATC-GATA----AAAG-TGTGAGAAAACAGAAAAGA---ATAAA-TC-A-CTGCAA-A-ATATTTGACAATCTTTTGTGTTTT-TTAG-TCCT-TAG-ATG-TGGTTT-TCGA---CA---------------------------------------------TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--GATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TTTTG--ATAAAAGC-AGCAATTG--TA--CC---TG--ACTTGCC-TAATTGCTTATGAAATA-AAG---TA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACAACAAAATA------TTT-T-G-AATA-A-A---T-A-ATCA--T---T--G-T-T----TTTT-CATGA--TGT-ATCAT-TCA-AAAT-AC--TGAAAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCC-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCAca
gi|6 : ACCAAC-T-CGC-TAAATA--CA------TCTA---------C-TAGTA---T-A-TGG-ATGGTTGTAACA-CCAACCC-C-CCCCCTC--------TTTTAAGT--AAATGGTAAAT--AAC--C-A-TACA-TTTTT--C-ACAGT---A--C-------AT-ATA-TGTGA-T-TTTAGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAGGAGGGG-TTTTTT-ATC-GATA----AAAG-TGTGAGAAA-CACAAA--A---ATAAG-TC-A-TTGAAA-ATAT-TTTGACA---TTTTGTGTTTC---AG-ACCT-TAG-ATG-TGATTT-TGGA---CAAC--C------T-------A---------TTAGTAATTAACATA-TAAA-CCATAC-ATCCGAAACCCA--CTTAGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATACCAACTAATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-AT-TAT-CCTCCCTT-GAAAAACGCAA---AATTTT-CG--ATTCC-G---GAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTT-GGTC-AATCT-T------AAA--AATA-CAA--CATGCATGAATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTT---------------G---CA-T------ATGAAATAAA----GC--ATTA------C------AAA---TGG-----G-CT-AGAAT--T-ACT-A-TC--CCG----TTTCC-A-T--GGCAACGGCAAATTT------TTT-T-G-AATA-A-A---T-G-ATCA--TGC-T--A-T-TTTTGTTTT-CATGA--TGT-ATCAT-CC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTCTATATGAT--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--at
gi|7 : ACCAAC-T-CGC-TAAATA--CCG-AC-CTGTA---------C-TA-TA---T-A--GG-ATGGCTGCAACA-CC--CAC-C-CACCCT---------TT--AAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TCAATAGT---A--C-------AT-ATA-GGTGA---TTTA-CTATAT-CATT-----------------CG--CT-A--A--ACTAAGAGGG---TTTTT-ATT-GATA----AAAG-TTTGAGAAAAC---AA-TA---ATAAA-TC-A-TTGC-A-A-ATATTTGACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---C-AC--C------TATTTAACA---------T-------------A-TAAA-CAAT-T-G---GAAAACCA--C-TGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-CGTGAATAAGA--TTTTTCTCAAACC-C--TCGGAC-A------T------GTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---A-TTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTT---GGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CCTTA-AA-AAA-TTGATTCTGTTA-CTTTGAATCATATTATT-------TA--G--ATAAAAGC-AGCCGCTG------CC---TG--ACTTGCC-TCTTTGCTTATGAAAT--AAG---CA-TTAC-AAATGA-CTAG--ATTGCTAA-TAAAACAGC------A------------------AAAATG-C-ACT-A-AC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------ATT-T-G-AA-A-A-A---T-A-ATCA--T-C-T--G-T-TTTCGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-AT-A-GGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--A
gi|8 : A-C-T-CGC-TAAATT--CCTAG---TGTA---------C-TAGTA---T-G-CGG-ATGGCTGTAACA-CC--CTC-C-CCCCCCAACCCCCTCTTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTTAGCTATAT-CATTGCCT-TAT----GATTGCG--CT-A--A--
gi|8 : cca-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGTC-A-----TT------TTTT-GC-TAT-CCTCCCTT-GAAA--CGCCA---AATTTT-CG--ATTAT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTTTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-ATAC-AAATGAGCTAAA-ATTGCGAATTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggtgataagatttttctcaaaccctcggtcattttttgctatcctcccttgaaacgccaaattttcgattatgaaaaaatgtctatttttagactttttaggtcaattttaaaaatacaacatgaatataagtacacattataaaatttgattttgttactttgaatcatattttttcttgataaaaacagcaattgtacctgacttgcctctttgcttatgaaataaagcaatacaaatgagctaaaattgcgaatta
gi|9 : ccaactcgctaaattcctagtgtactagtatgcggatggctgtaacaccctccccccccaaccccctcttttaagtaagtggtaaataagcatacattttttcatagtacatatatgtgattttagctatatcattgccttatgattgcgctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGTTTA--AA--C--AGTC-ATAT-TTACCAACTTCTTC----------ATAAG----TGTTCTCAAATC-C--TCGGGC-AATTTTTT------TTTT-GT-TAT-CTTCCCTT-GAAACACGTCA---ATTTTT-TTTTATTCA-G---AAAG-AA--TGT-CTGTTT-----AAA-C-TTTTTTTGGTC-TATCAAT------AAGGCAATG-CAA--GACG----AATATAA------------------AT-TTGATTC-GTTA-TTTTGAATCATGTTCAT--------CTTG--ATAAAAAC-AGCCATTG--TA--CA---TG--ACTTGCC-TCTTTGCATATGAAATA-AAG---CA-GTAA-AAATACGTCAGA-ATTGCTATTTAAAACTGC-------AAAAATGGT----A-CC-AAAATA-T-ATT-A-CC--TCG----TTTCT-A-T--GGCAACGG--AAAAT------TTT-T-G-AATA-A-A---T-A-ATGA--TAC-T--G-T-TTTTGTTTT-CATGA--GTT-ACCAT-TC--AAGT-AA--TG-AGC-AT-TTGGACC-AG-CTC-------T--AT--G---AG-----TAA-T-GA-T---TTCT-G--AC-TCCTT-GT--
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222 222222222 1111111 11 1 111 11 111 111 11111111111111111111111111111111111111111111 11 1111111111111 111 111111 1111111 11 222222 1111111 1111 111111 11 1111111
lowQualScore : 8 4 4 4 55 888888888888888888888 777 4 4 4 4 55 0 4 4 999999999 55 0 99 55 4 4 4 4 4 777 55 3333333 4 7 3 3 7 3 444 77777 5 55 4 77777 8 00 4 4 9999 4 0 8 2 222 777 4 5 5 11 88 5 333 0 333 5 5 5 5 5 888 00000000000000000000000000000000000000000000 5 5 5 5 888 11 66 66 66 66 4 4 4 4 4 88 3 55 3 6666666666666 3 88 3 3 666 1 4 55 4 444 4 55 4 777 4 4 4 4 4 777777 66 4 66 9999 1 1 8 66 4 4 1 4 4444444 66 4 00 66 777 66 4 3 666 3 3 3 1 111111 2222222 4 55 8 4 4 99 2222 4 4 55 2 666666 3 3 3 3 3 999 444 44 1 6 44 3 3 3 44 3 3 00 3 44 3 3 3 3 3 0000000 44 77 555 77777 3 2 2 777 2 33 2 2 444 44 3 4 55 4 4
lowQualScore : . . . . .. ..................... ... . . . . .. . . . ......... .. . .. .. . . . . . ... .. ....... . . . . . . ... ..... . .. . ..... . .. . . .... . . . . ... ... . . . .. .. . ... . ... . . . . . ... ............................................ . . . . ... .. .. .. .. .. . . . . . .. . .. . ............. . .. . . ... . . .. . ... . .. . ... . . . . . ...... .. . .. .... . . . .. . . . . ....... .. . .. .. ... .. . . ... . . . . ...... ....... . .. . . . .. .... . . .. . ...... . . . . . ... ... .. . . .. . . . .. . . .. . .. . . . . . ....... .. .. ... ..... . . . ... . .. . . ... .. . . .. . .
lowQualScore : 9 0 0 0 55 000000000000000000000 000 0 0 0 0 55 4 0 0 555555555 55 7 55 55 0 0 0 0 0 000 55 0000000 0 3 6 6 3 6 222 88888 6 55 0 22222 9 66 4 4 4444 4 1 2 0 999 888 4 0 0 99 22 0 888 2 222 0 0 0 0 0 888 99999999999999999999999999999999999999999999 0 0 0 0 888 99 99 11 11 11 4 4 0 0 0 66 6 00 6 9999999999999 6 33 6 6 444 1 0 55 0 000 0 55 0 888 4 4 4 4 4 222222 11 4 11 4444 9 1 9 11 4 4 4 4 4444444 11 4 66 11 888 11 4 6 444 6 6 6 4 888888 2222222 0 66 0 0 0 55 5555 0 0 55 2 888888 6 6 6 3 3 222 333 66 0 7 66 3 3 1 22 1 1 44 1 22 1 1 1 1 1 0000000 22 33 444 77777 1 9 9 999 9 99 9 9 333 66 2 0 55 4 4
consensus : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
Reference ( family-483 ) : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|1 : A-C-T-CGC-TAAATATACCT-GG-CTATA---------CATAGTA---TTA-CGG-ATGGCTGTAACAACC--CCC-C-CCCCCTCC-------TTTTAAGT--AAGTGGTAAATTAAAGACT-A-TATAGTTTTT-TC-ATAGCCTCA--C-------AT-ATAATGTGA-T-TTTTAGCTAGAT-CATTGCCT-AAT----GATTGCG--CTCA--A--A-TAAGAGGGGTTTTTTT-ATC-GATA----AAA--TGTGAGAAA-CACAA--GA---ATAA--TC-ATTG-AAA--ATA-TTTTTTACA---TCTTGTGTTGT---AGCTCCC-TAG-ATG-TGATT----GA---C--C--CA-----T-------AGGCC-----T-------------A-TAAA-CAAT-T-A---GAAACCCAAACTTGGGTCTACCTGTATTTTTA--A---T--AGTCCATCG-ATGC-AACTTATTCATCT-GGTG-AGAGGAG-TTTTTCTCAAACC-C---CG--C-A-----TA------TTTT-GCCTAT-CCTCCCTT-GAAAA-CGCAATTTATTTTT-T---ATTCTTG---AAAACAA--TGTTCTATTTTT---AGA-C-TTTT---GGTCGAATTT-CCTCTCAAAA--AATA-CA---CATG----AATATAAGTTACA--CATTATAACAAC-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTGGTTA--CC---TG--ATTTGCCCTCTTTGCTTATGACATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTATTAAAAACGGC-------AAAAATGGT----A-CCAAAAATG-C-ACT-ACCC--CCGCCTCTTCCC-A-TGAGACAACGGCGAGAAACAT---TTT-T-GAAATA-A-AAATT-A-ATCA--TGC-TCCG-TCTTTTGTTTT-CATGACTCGT-A-CAT-TC--AAAT-AC--TG-AACGGT-ATGGGCCAAA-TTC-------TGAGT--G---AG-----TAG-TGGA-TGGGTCATGG--ACGCCTCT-GCGAGTTA--ATTCAATTGGGCTCCTAAA-CAGAGAATTCA
gi|10 : ccaaA-C-T-CGC-TAAATA--CCG-AC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGCAACA-CC--CAC-C-CACCCC---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TC-ATAGT---A--C-------AT-ATA-GGTGA-T-TTT-AGCTATAT-CATTGC----------------G--CT-A--A--A-TAAGAGGG--TTTTTT-ATT-GATA----AAAG-TTTGAGAAA-TACAA--TA---ATAAA-TC-ATTG-CAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------TTTAACAT------A-TAAA-CAAT-T-G---GAAAACCA--CTTGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TG------TTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTt
gi|11 : ccaAACCA-AGT-CGC-TAAATA--CCC-GTACTGTAANNNN----N-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NCCCTC---------TTTTAAGT--TAATGGTTAAT--AAG--C-A-TACA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAA----CATTGCG--CT-A--T--A-TAAGAGGA--TTTTTT-TCC-GATA----AAAG-TGTGAT-AAACAC-AA-GA---ATAAA-
gi|12 : TA-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----A--C-AAAAT--C-ACT-A-CC--CCG-----TTCC-A-T--TGCAACGGCAAAAAA------TTT-TCG-AAT--A-A---T---ATTA--TAC--------------------------GT-ATCA--TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TA--C-GA-----TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-T-G--TCCT-TA-CAGA-AATTCA
gi|13 : C------ACAGAATGGTCTATG-TC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAACAAA------ATT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-CTTTGTTTT-CATGA--TGT-ATCAT-TG--AAAT-AC--TG-AAC-GT-ATGGGCC-AT-TTC-------T--AT--G---TG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATt
gi|14 : ------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTCTTTT-CATGA--TGT-ATCAT-TC--AAAT-GC--TG-AAC-TT-AT
gi|14 : actC-AA-TTC-------T--AT--GCGGAG-----TAG---GA-TA--TTCT-G--AC-C-TCT-GT---TA----TT--A-TTG--TCCT-TAACAGAGAATTCAatnnnnnnnnnnnnnnnnnnnnnnnnnggaacaattctatgcggagtaggatattctgacctctgttattattgtccttaacagagaattcatg
gi|15 : actttttgaataaataatcatgctgtttttcttttcatgatgtatcattcaaatgctgaacttatatnnnnnnnnnnnnnnnnnnnnnnnnnggaaA-A-A---T-GTATCA--TGTAT--G-T-TTAAATTT---A-AA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGTC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AT-CCTCT-GT--ATAA--ATTTAA-TGG--TCCT-TA-CAGAGAATTCAtg
gi|16 : TT-CATGA--TGC-ATCAT-TC--AAAT-AC--TG-AAC----------------TC-------T--AT--G---AGTAGGCTAG-T-GA-T---TTCT-G--AC-CCCCT-GT--ATAAATATTCAA-TAA--TTCtgtt
gi|17 : --TTTTTCTCAAACC-C--TCGGAC-A-----TTTTTTGATTTT-GA-TAT-TCTCCCTA-GAAAAACGCCA---Aatg
gi|18 : A-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----
gi|19 : -GA-T---TTCT-G--AC-CCTCT-AT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|2 : -T-CGCCTAAA-A--TCC-G----GTA---------C-TAGTA---T-A-CGGGATGGCTGTAACA-CC--CTCTC-CCCCCTC--------TTTTAAGT--AAGTGGTAAATT-AAG--C-AGTACA-TTTTT-TG-ATAGT---A--TTTATACTAT-GTA-TGTGA-T-TTTTAGCTATAT-CATTGCCTTAAT----GATTGCG--CT-A--A--AATAAGAGGG--TTTT---ATC-AATATAAAAAAGCTGGGAAGAAACACTAA-GA---ATAAAATC-AATT-AAA--ATAATTTTG-AAAG--TCTTG-GTTTTAT-GG-GCCT-TAG-ATGGTGATTT-TCGA---CAAC--CAATTAAC-------A---------T-------------A-TAAA-AAAT-TTA---GAAACCCA--CTTG-ATCTA--TGTATCTGTG--AAAGT--AGTC-GTCGGATGTCAACGTATCT-TTGCGGTG-ATAA-A--TTTTTCGCAAATC-CGTTCATAC-A-----TT------TTTTTGTCTATTCCTCTCTTCGAGAAACGCCA---ATTTT--CG--ATTCT-G---GAAA-AAAGTGT-CTATTTTT---AGAGC-TTTTTA-GGTC-AATTT-T------AAA--TATATCAAGACATG----AATATAA-T-ACA--CATTATAA-AAT-TTGAGTTTTTTA-CTTTGAATCATATTC-T-------TCATGATATAAAAAC-AGCAATTG--TA--CC---TG--A-TTGCC-TC--TGCTTATAAAGTA-AAGAAACATTTAC-AAATGAGCTAGA-AATGCTAATTAAAAAGGCAAAAAAAAAAAATGAT----A--C-AAAATG-C-AGT-A-CC--CCGT---TTTCC-AGT--GGCACCGG----AGATTTTTTTTT-T-A-AATATA-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA---GT-ATTAT-TTCAAAAT-GCCATG-AAC-GTGATGGGGC-AA-TTC-------T--ATA-A---AG-----TAA-T-GA-T---TTCT-G--AC-CCTGTCGT--ACAA--ATTCAA-TGG--TCCT-TA-CAGAAAATTCtg
gi|20 : A-TATGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GGT
gi|3 : cAAACCA-A-G-TGC-TAAATA--CCC-GT-ATGTAANNNNNNNNN-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NNTCCT---------CTTTAAGTTTAA-TGGTTAAT--AAG--CGA-TCCA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTAT-T-TTT-AGCTATAT-CATTGCTA-AAA----CATTGCG--CT-ATAA--A-TAAGAGGA--TTTTTT-TTCCGATA----AAAG-TGTGATAAA-CACAA--GACATATAAA-TAGATTG-AAAT-AT--TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTTGTCGA---CAACACC------T-------AATTAA----C-------------A-TAAAACAAT-T-A---GAA--CCA--CTTGGATCTA--TGTATCGTTA--AA--T--AGTC-CTCG-ATGTCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGACAA-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACG-CA---ATTTTT-CG--ATTCT-G----AAA-AA--TGT-CTATTTTTTAGAAA-CATTTTTA-GGTC-AATTT-TA-----AAA--AATA-CAA--TATG----AATAT-AGT-ACAGGCATTATAA-AAT-TTGATTCTGTTAGTTTTAAATCATATTCTT-------TCTTG--ATAAAGCA-AGCAATTGT-TACTCC---TG--ACTT-CC-TCTTTGCTTATG-AATAGAAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACAGCA-----AAAAAATGGT----ACCC-AAAATGACGACT-A-CCT-CCG----TTTCCAA-T--GGCAACGGC-TAAAA------TTT-T-G-AATA-ACA---TAA-ACCA--TGCGT--GTT-TTTTGTTTTCCATTA--TGTAATCAT-TCT-CAAT-AC--TG-AAC-GT-ATGGGTC-AA-TCC-------T--ATAAA---AG-----TAGTT-GACT---TTCT-GCAAA-CATCT-GT---TAA--AAT-AA-TGG--TCAT-TA-a
gi|4 : AAACA-C-TTCGC-TAAATA--CT--GCACTGTA--------------TA---T-AACGG-ATGG-TGTAACA-CC--CCC-CATCCTCT---------TTTTAAGT--A-GTGGTAA-T--AAG--C-A-TACA-TTTGTATC-ATAGT---AAAC-------AT-ATACTGTGA-T-TTT-TGCTATAT-CATTGC-T-AATATACGAT---G--CT-A--A--A-TAAGAGGG--TTTTTTTATC-GATA----AA-G-TGTGATAAA---CAGA-GA---ATAAA-TG-ATTG-AAAGAAT--TTTTG-ACA---T-TTGTGTTTT-T----TCCTGTAGTAT--T--TTT-TCGAGGACA-C--C------T-------AATTAAACGAT-------------AGTAAA-CAAT-T-A---GAAACCCAA-CTTGGATTCA--TGTATCTTTACAAA--TTAGGTC-ACGG-ATGCCAA-TTATTC-TTA-GGTG-ATAAGAATTTTTTCTCAAACCAC--TCGGAA-AAGT--TT------TTTT-GA-TAC-CCTCC-TT-GTAAAATTACA---ATTTTTTCG--ATTCT-A---AAAA-AT--TGT-CTATTTTT---AGA-C--TTTTA-GGTC--ATTT-T------AAA--AATA-CAA--CATG-----ATAT-AGTAACA--CATTATAA-AATGTTAACT---TTA-CTTTG-ATCATATTCTTGTTCTTGTCTTG--AT--AAACGAGCAATTG--TA--CCAGTTGAAACTTGCT-CTTTTGCTT---AAATA-AAG---CA-TTACAAAATG-TCTAGACATTGCTAATC-AAACGACACAA--AGAAAATGGT----A-CC-TACA-G-CAACTAA-CCCGCCG----TTGCC-A-T--GGC-ACGGCAAAAAA------TTTCT-G-AATA-A-AG--T-A-ATCATCTGC-T--G-T-TTTTGTTTT-CATGA--TGT-GT-ATCTC--AAATGAC--CG-AAC-GT-ATGG--C-AACTTC-------T--AT--G---AG-----TAG-T-GA-T---CTTT-G--A--CCTCT-GT--ATAA--ATCTCA-TGG--TCC--TA-CAGAGAATga
gi|5 : ccAAACCA-C-T-CGC-TAAATA--CCT-GC-TGATA---------C-TAGTAAAAT-A-CG--ATCGCTGTAACA-CC--CCC-C-TCCACT---------TTTTAA-----------AAAT--AAG--C-A-TAC----TTT-TC-ATAGT---A--C-------ATTATA-TATGAATATTT-AGCTATACATATTGACT-AAT----GAT-GCGGTCT-A--TCTA-TAGGA------CTTTT-ATC-GATA----AAAG-TGTGAGAAAACAGAAAAGA---ATAAA-TC-ACTGCAAA--ATA-TTT-G-ACAATCTTTTGTGTTTT-TTAG-TCCT-TAG-ATG-TGGTTT-TCGA---CA---------------------------------------------TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--GATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TTTTG--ATAAAAGC-AGCAATTG--TA--CC---TG--ACTTGCC-TAATTGCTTATGAAATA-AAG---TA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACAACAAAATA------TTT-T-G-AATA-A-A---T-A-ATCA--T---T--G-T-T----TTTT-CATGA--TGT-ATCAT-TCA-AAAT-AC--TGAAAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCC-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCAca
gi|6 : ACCAAC-T-CGC-TAAATA--CA------TCTA---------C-TAGTA---T-A-TGG-ATGGTTGTAACA-CCAACCC-C-CCCCCTC--------TTTTAAGT--AAATGGTAAAT--AAC--C-A-TACA-TTTTT--C-ACAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAGGAGGGG-TTTTTT-ATC-GATA----AAAG-TGTGAGAAA-CACAAA--A---ATAAG-TC-ATTG-AAA--ATA-TTTTG-ACA---TTTTGTGTTTC---AG-ACCT-TAG-ATG-TGATTT-TGGA---CAAC--C------T-------A---------TTAGTAATTAACATA-TAAA-CCATAC-ATCCGAAACCCA--CTTAGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATACCAACTAATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-AT-TAT-CCTCCCTT-GAAAAACGCAA---AATTTT-CG--ATTCC-G---GAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTT-GGTC-AATCT-T------AAA--AATA-CAA--CATGCATGAATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTT---------------G---CA-T------ATGAAATAAA----GC--ATTA------C------AAA---TGG-----G-CT-AGAAT--T-ACT-A-TC--CCG----TTTCC-A-T--GGCAACGGCAAATTT------TTT-T-G-AATA-A-A---T-G-ATCA--TGC-T--A-T-TTTTGTTTT-CATGA--TGT-ATCAT-CC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTCTATATGAT--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--at
gi|7 : ACCAAC-T-CGC-TAAATA--CCG-AC-CTGTA---------C-TA-TA---T-A--GG-ATGGCTGCAACA-CC--CAC-C-CACCCT---------TT--AAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TCAATAGT---A--C-------AT-ATA-GGTGA-T-TT---ACTATAT-CATT-----------------CG--CT-A--A--ACTAAGAGGG---TTTTT-ATT-GATA----AAAG-TTTGAGAAAAC---AA-TA---ATAAA-TC-ATTG-CAA--ATA--TTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---C-AC--C------TATTTAACA---------T-------------A-TAAA-CAAT-T-G---GAAAACCA--C-TGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-CGTGAATAAGA--TTTTTCTCAAACC-C--TCGGAC-A------T------GTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---A-TTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTT---GGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CCTTA-AA-AAA-TTGATTCTGTTA-CTTTGAATCATATTATT-------TA--G--ATAAAAGC-AGCCGCTG------CC---TG--ACTTGCC-TCTTTGCTTATGAAAT--AAG---CA-TTAC-AAATGA-CTAG--ATTGCTAA-TAAAACAGC------A------------------AAAATG-C-ACT-A-AC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------ATT-T-G-AA-A-A-A---T-A-ATCA--T-C-T--G-T-TTTCGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-AT-A-GGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--A
gi|8 : A-C-T-CGC-TAAATT--CCTAG---TGTA---------C-TAGTA---T-G-CGG-ATGGCTGTAACA-CC--CTC-C-CCCCCCAACCCCCTCTTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-TAT----GATTGCG--CT-A--A--
gi|8 : cca-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGTC-A-----TT------TTTT-GC-TAT-CCTCCCTT-GAAA--CGCCA---AATTTT-CG--ATTAT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTTTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-ATAC-AAATGAGCTAAA-ATTGCGAATTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggtgataagatttttctcaaaccctcggtcattttttgctatcctcccttgaaacgccaaattttcgattatgaaaaaatgtctatttttagactttttaggtcaattttaaaaatacaacatgaatataagtacacattataaaatttgattttgttactttgaatcatattttttcttgataaaaacagcaattgtacctgacttgcctctttgcttatgaaataaagcaatacaaatgagctaaaattgcgaatta
gi|9 : ccaactcgctaaattcctagtgtactagtatgcggatggctgtaacaccctccccccccaaccccctcttttaagtaagtggtaaataagcatacattttttcatagtacatatatgtgattttagctatatcattgccttatgattgcgctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGTTTA--AA--C--AGTC-ATAT-TTACCAACTTCTTC----------ATAAG----TGTTCTCAAATC-C--TCGGGC-AATTTTTT------TTTT-GT-TAT-CTTCCCTT-GAAACACGTCA---ATTTTT-TTTTATTCA-G---AAAG-AA--TGT-CTGTTT-----AAA-C-TTTTTTTGGTC-TATCAAT------AAGGCAATG-CAA--GACG----AATATAA------------------AT-TTGATTC-GTTA-TTTTGAATCATGTTCAT--------CTTG--ATAAAAAC-AGCCATTG--TA--CA---TG--ACTTGCC-TCTTTGCATATGAAATA-AAG---CA-GTAA-AAATACGTCAGA-ATTGCTATTTAAAACTGC-------AAAAATGGT----A-CC-AAAATA-T-ATT-A-CC--TCG----TTTCT-A-T--GGCAACGG--AAAAT------TTT-T-G-AATA-A-A---T-A-ATGA--TAC-T--G-T-TTTTGTTTT-CATGA--GTT-ACCAT-TC--AAGT-AA--TG-AGC-AT-TTGGACC-AG-CTC-------T--AT--G---AG-----TAA-T-GA-T---TTCT-G--AC-TCCTT-GT--
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222 222222222 1111111 11 1 111 11 111 111 11111111111111111111111111111111111111111111 11 1111111111111 111 111111 1111111 11 222222 1111111 1111 111111 11 1111111
lowQualScore : 8 4 4 4 55 888888888888888888888 777 4 4 4 4 55 0 4 4 999999999 55 0 99 55 4 4 4 4 4 777 55 3333333 4 7 3 3 7 3 444 77777 5 55 4 77777 8 00 4 4 9999 4 0 8 2 222 777 4 5 5 11 88 5 333 0 333 5 5 5 5 5 888 00000000000000000000000000000000000000000000 5 5 5 5 888 11 66 66 66 66 4 4 4 4 4 88 3 55 3 6666666666666 3 88 3 3 666 1 4 55 4 444 4 55 4 777 4 4 4 4 4 777777 66 4 66 9999 1 1 8 66 4 4 1 4 4444444 66 4 00 66 777 66 4 3 666 3 3 3 1 111111 2222222 4 55 8 4 4 99 2222 4 4 55 2 666666 3 3 3 3 3 999 444 44 1 6 44 3 3 3 44 3 3 00 3 44 3 3 3 3 3 0000000 44 77 555 77777 3 2 2 777 2 33 2 2 444 44 3 4 55 4 4
lowQualScore : . . . . .. ..................... ... . . . . .. . . . ......... .. . .. .. . . . . . ... .. ....... . . . . . . ... ..... . .. . ..... . .. . . .... . . . . ... ... . . . .. .. . ... . ... . . . . . ... ............................................ . . . . ... .. .. .. .. .. . . . . . .. . .. . ............. . .. . . ... . . .. . ... . .. . ... . . . . . ...... .. . .. .... . . . .. . . . . ....... .. . .. .. ... .. . . ... . . . . ...... ....... . .. . . . .. .... . . .. . ...... . . . . . ... ... .. . . .. . . . .. . . .. . .. . . . . . ....... .. .. ... ..... . . . ... . .. . . ... .. . . .. . .
lowQualScore : 9 0 0 0 55 000000000000000000000 000 0 0 0 0 55 4 0 0 555555555 55 7 55 55 0 0 0 0 0 000 55 0000000 0 3 6 6 3 6 222 88888 6 55 0 22222 9 66 4 4 4444 4 1 2 0 999 888 4 0 0 99 22 0 888 2 222 0 0 0 0 0 888 99999999999999999999999999999999999999999999 0 0 0 0 888 99 99 11 11 11 4 4 0 0 0 66 6 00 6 9999999999999 6 33 6 6 444 1 0 55 0 000 0 55 0 888 4 4 4 4 4 222222 11 4 11 4444 9 1 9 11 4 4 4 4 4444444 11 4 66 11 888 11 4 6 444 6 6 6 4 888888 2222222 0 66 0 0 0 55 5555 0 0 55 2 888888 6 6 6 3 3 222 333 66 0 7 66 3 3 1 22 1 1 44 1 22 1 1 1 1 1 0000000 22 33 444 77777 1 9 9 999 9 99 9 9 333 66 2 0 55 4 4
consensus : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
Reference ( family-483 ) : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|1 : A-C-T-CGC-TAAATATACCT-GG-CTATA---------CATAGTA---TTA-CGG-ATGGCTGTAACAACC--CCC-C-CCCCCTCC-------TTTTAAGT--AAGTGGTAAATTAAAGACT-A-TATAGTTTTT-TC-ATAGCCTCA--C-------AT-ATAATGTGA-T-TTTTAGCTAGAT-CATTGCCT-AAT----GATTGCG--CTCA--A--A-TAAGAGGGGTTTTTTT-ATC-GATA----AAA--TGTGAGAAA-CACAA--GA---ATAA--TC-ATTG-AAA--ATA-TTTTTTACA---TCTTGTGTTGT---AGCTCCC-TAG-ATG-TGATT----GA---C--C--CA-----T-------AGGCC-----T-------------A-TAAA-CAAT-T-A---GAAACCCAAACTTGGGTCTACCTGTATTTTTA--A---T--AGTCCATCG-ATGC-AACTTATTCATCT-GGTG-AGAGGAG-TTTTTCTCAAACC-C---CG--C-A-----TA------TTTT-GCCTAT-CCTCCCTT-GAAAA-CGCAATTTATTTTT-T---ATTCTTG---AAAACAA--TGTTCTATTTTT---AGA-C-TTTT---GGTCGAATTT-CCTCTCAAAA--AATA-CA---CATG----AATATAAGTTACA--CATTATAACAAC-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTGGTTA--CC---TG--ATTTGCCCTCTTTGCTTATGACATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTATTAAAAACGGC-------AAAAATGGT----A-CCAAAAATG-C-ACT-ACCC--CCGCCTCTTCCC-A-TGAGACAACGGCGAGAAACAT---TTT-T-GAAATA-A-AAATT-A-ATCA--TGC-TCCG-TCTTTTGTTTT-CATGACTCGT-A-CAT-TC--AAAT-AC--TG-AACGGT-ATGGGCCAAA-TTC-------TGAGT--G---AG-----TAG-TGGA-TGGGTCATGG--ACGCCTCT-GCGAGTTA--ATTCAATTGGGCTCCTAAA-CAGAGAATTCA
gi|10 : ccaaA-C-T-CGC-TAAATA--CCG-AC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGCAACA-CC--CAC-C-CACCCC---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TC-ATAGT---A--C-------AT-ATA-GGTGA-T-TTT-AGCTATAT-CATTGC----------------G--CT-A--A--A-TAAGAGGG--TTTTTT-ATT-GATA----AAAG-TTTGAGAAA-TACAA--TA---ATAAA-TC-ATTG-CAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------TTTAACAT------A-TAAA-CAAT-T-G---GAAAACCA--CTTGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TG------TTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTt
gi|11 : ccaAACCA-AGT-CGC-TAAATA--CCC-GTACTGTAANNNN----N-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NCCCTC---------TTTTAAGT--TAATGGTTAAT--AAG--C-A-TACA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAA----CATTGCG--CT-A--T--A-TAAGAGGA--TTTTTT-TCC-GATA----AAAG-TGTGAT-AAACAC-AA-GA---ATAAA-
gi|12 : TA-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----A--C-AAAAT--C-ACT-A-CC--CCG-----TTCC-A-T--TGCAACGGCAAAAAA------TTT-TCG-AAT--A-A---T---ATTA--TAC--------------------------GT-ATCA--TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TA--C-GA-----TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-T-G--TCCT-TA-CAGA-AATTCA
gi|13 : C------ACAGAATGGTCTATG-TC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAACAAA------ATT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-CTTTGTTTT-CATGA--TGT-ATCAT-TG--AAAT-AC--TG-AAC-GT-ATGGGCC-AT-TTC-------T--AT--G---TG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATt
gi|14 : ------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTCTTTT-CATGA--TGT-ATCAT-TC--AAAT-GC--TG-AAC-TT-AT
gi|14 : actC-AA-TTC-------T--AT--GCGGAG-----TAG---GA-TA--TTCT-G--AC-C-TCT-GT---TA----TT--A-TTG--TCCT-TAACAGAGAATTCAatnnnnnnnnnnnnnnnnnnnnnnnnnggaacaattctatgcggagtaggatattctgacctctgttattattgtccttaacagagaattcatg
gi|15 : actttttgaataaataatcatgctgtttttcttttcatgatgtatcattcaaatgctgaacttatatnnnnnnnnnnnnnnnnnnnnnnnnnggaaA-A-A---T-GTATCA--TGTAT--G-T-TTAAATTT---A-AA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGTC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AT-CCTCT-GT--ATAA--ATTTAA-TGG--TCCT-TA-CAGAGAATTCAtg
gi|16 : TT-CATGA--TGC-ATCAT-TC--AAAT-AC--TG-AAC----------------TC-------T--AT--G---AGTAGGCTAG-T-GA-T---TTCT-G--AC-CCCCT-GT--ATAAATATTCAA-TAA--TTCtgtt
gi|17 : --TTTTTCTCAAACC-C--TCGGAC-A-----TTTTTTGATTTT-GA-TAT-TCTCCCTA-GAAAAACGCCA---Aatg
gi|18 : A-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----
gi|19 : -GA-T---TTCT-G--AC-CCTCT-AT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|2 : -T-CGCCTAAA-A--TCC-G----GTA---------C-TAGTA---T-A-CGGGATGGCTGTAACA-CC--CTCTC-CCCCCTC--------TTTTAAGT--AAGTGGTAAATT-AAG--C-AGTACA-TTTTT-TG-ATAGT---A--TTTATACTAT-GTA-TGTGA-T-TTTTAGCTATAT-CATTGCCTTAAT----GATTGCG--CT-A--A--AATAAGAGGG--TTTT---ATC-AATATAAAAAAGCTGGGAAGAAACACTAA-GA---ATAAAATC-AATT-AAA--ATAATTTTG-AAAG--TCTTG-GTTTTAT-GG-GCCT-TAG-ATGGTGATTT-TCGA---CAAC--CAATTAAC-------A---------T-------------A-TAAA-AAAT-TTA---GAAACCCA--CTTG-ATCTA--TGTATCTGTG--AAAGT--AGTC-GTCGGATGTCAACGTATCT-TTGCGGTG-ATAA-A--TTTTTCGCAAATC-CGTTCATAC-A-----TT------TTTTTGTCTATTCCTCTCTTCGAGAAACGCCA---ATTTT--CG--ATTCT-G---GAAA-AAAGTGT-CTATTTTT---AGAGC-TTTTTA-GGTC-AATTT-T------AAA--TATATCAAGACATG----AATATAA-T-ACA--CATTATAA-AAT-TTGAGTTTTTTA-CTTTGAATCATATTC-T-------TCATGATATAAAAAC-AGCAATTG--TA--CC---TG--A-TTGCC-TC--TGCTTATAAAGTA-AAGAAACATTTAC-AAATGAGCTAGA-AATGCTAATTAAAAAGGCAAAAAAAAAAAATGAT----A--C-AAAATG-C-AGT-A-CC--CCGT---TTTCC-AGT--GGCACCGG----AGATTTTTTTTT-T-A-AATATA-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA---GT-ATTAT-TTCAAAAT-GCCATG-AAC-GTGATGGGGC-AA-TTC-------T--ATA-A---AG-----TAA-T-GA-T---TTCT-G--AC-CCTGTCGT--ACAA--ATTCAA-TGG--TCCT-TA-CAGAAAATTCtg
gi|20 : A-TATGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GGT
gi|3 : cAAACCA-A-G-TGC-TAAATA--CCC-GT-ATGTAANNNNNNNNN-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NNTCCT---------CTTTAAGTTTAA-TGGTTAAT--AAG--CGA-TCCA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTAT-T-TTT-AGCTATAT-CATTGCTA-AAA----CATTGCG--CT-ATAA--A-TAAGAGGA--TTTTTT-TTCCGATA----AAAG-TGTGATAAA-CACAA--GACATATAAA-TAGATTG-AAAT-AT--TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTTGTCGA---CAACACC------T-------AATTAA----C-------------A-TAAAACAAT-T-A---GAA--CCA--CTTGGATCTA--TGTATCGTTA--AA--T--AGTC-CTCG-ATGTCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGACAA-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACG-CA---ATTTTT-CG--ATTCT-G----AAA-AA--TGT-CTATTTTTTAGAAA-CATTTTTA-GGTC-AATTT-TA-----AAA--AATA-CAA--TATG----AATAT-AGT-ACAGGCATTATAA-AAT-TTGATTCTGTTAGTTTTAAATCATATTCTT-------TCTTG--ATAAAGCA-AGCAATTGT-TACTCC---TG--ACTT-CC-TCTTTGCTTATG-AATAGAAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACAGCA-----AAAAAATGGT----ACCC-AAAATGACGACT-A-CCT-CCG----TTTCCAA-T--GGCAACGGC-TAAAA------TTT-T-G-AATA-ACA---TAA-ACCA--TGCGT--GTT-TTTTGTTTTCCATTA--TGTAATCAT-TCT-CAAT-AC--TG-AAC-GT-ATGGGTC-AA-TCC-------T--ATAAA---AG-----TAGTT-GACT---TTCT-GCAAA-CATCT-GT---TAA--AAT-AA-TGG--TCAT-TA-a
gi|4 : AAACA-C-TTCGC-TAAATA--CT--GCACTGTA--------------TA---T-AACGG-ATGG-TGTAACA-CC--CCC-CATCCTCT---------TTTTAAGT--A-GTGGTAA-T--AAG--C-A-TACA-TTTGTATC-ATAGT---AAAC-------AT-ATACTGTGA-T-TTT-TGCTATAT-CATTGC-T-AATATACGAT---G--CT-A--A--A-TAAGAGGG--TTTTTTTATC-GATA----AA-G-TGTGATAAA---CAGA-GA---ATAAA-TG-ATTG-AAAGAAT--TTTTG-ACA---T-TTGTGTTTT-T----TCCTGTAGTAT--T--TTT-TCGAGGACA-C--C------T-------AATTAAACGAT-------------AGTAAA-CAAT-T-A---GAAACCCAA-CTTGGATTCA--TGTATCTTTACAAA--TTAGGTC-ACGG-ATGCCAA-TTATTC-TTA-GGTG-ATAAGAATTTTTTCTCAAACCAC--TCGGAA-AAGT--TT------TTTT-GA-TAC-CCTCC-TT-GTAAAATTACA---ATTTTTTCG--ATTCT-A---AAAA-AT--TGT-CTATTTTT---AGA-C--TTTTA-GGTC--ATTT-T------AAA--AATA-CAA--CATG-----ATAT-AGTAACA--CATTATAA-AATGTTAACT---TTA-CTTTG-ATCATATTCTTGTTCTTGTCTTG--AT--AAACGAGCAATTG--TA--CCAGTTGAAACTTGCT-CTTTTGCTT---AAATA-AAG---CA-TTACAAAATG-TCTAGACATTGCTAATC-AAACGACACAA--AGAAAATGGT----A-CC-TACA-G-CAACTAA-CCCGCCG----TTGCC-A-T--GGC-ACGGCAAAAAA------TTTCT-G-AATA-A-AG--T-A-ATCATCTGC-T--G-T-TTTTGTTTT-CATGA--TGT-GT-ATCTC--AAATGAC--CG-AAC-GT-ATGG--C-AACTTC-------T--AT--G---AG-----TAG-T-GA-T---CTTT-G--A--CCTCT-GT--ATAA--ATCTCA-TGG--TCC--TA-CAGAGAATga
gi|5 : ccAAACCA-C-T-CGC-TAAATA--CCT-GC-TGATA---------C-TAGTAAAAT-A-CG--ATCGCTGTAACA-CC--CCC-C-TCCACT---------TTTTAA-----------AAAT--AAG--C-A-TAC----TTT-TC-ATAGT---A--C-------ATTATA-TATGAATATTT-AGCTATACATATTGACT-AAT----GAT-GCGGTCT-A--TCTA-TAGGA------CTTTT-ATC-GATA----AAAG-TGTGAGAAAACAGAAAAGA---ATAAA-TC-ACTGCAAA--ATA-TTT-G-ACAATCTTTTGTGTTTT-TTAG-TCCT-TAG-ATG-TGGTTT-TCGA---CA---------------------------------------------TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--GATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TTTTG--ATAAAAGC-AGCAATTG--TA--CC---TG--ACTTGCC-TAATTGCTTATGAAATA-AAG---TA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACAACAAAATA------TTT-T-G-AATA-A-A---T-A-ATCA--T---T--G-T-T----TTTT-CATGA--TGT-ATCAT-TCA-AAAT-AC--TGAAAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCC-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCAca
gi|6 : ACCAAC-T-CGC-TAAATA--CA------TCTA---------C-TAGTA---T-A-TGG-ATGGTTGTAACA-CCAACCC-C-CCCCCTC--------TTTTAAGT--AAATGGTAAAT--AAC--C-A-TACA-TTTTT--C-ACAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAGGAGGGG-TTTTTT-ATC-GATA----AAAG-TGTGAGAAA-CACAAA--A---ATAAG-TC-ATTG-AAA--ATA-TTTTG-ACA---TTTTGTGTTTC---AG-ACCT-TAG-ATG-TGATTT-TGGA---CAAC--C------T-------A---------TTAGTAATTAACATA-TAAA-CCATAC-ATCCGAAACCCA--CTTAGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATACCAACTAATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-AT-TAT-CCTCCCTT-GAAAAACGCAA---AATTTT-CG--ATTCC-G---GAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTT-GGTC-AATCT-T------AAA--AATA-CAA--CATGCATGAATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTT---------------G---CA-T------ATGAAATAAA----GC--ATTA------C------AAA---TGG-----G-CT-AGAAT--T-ACT-A-TC--CCG----TTTCC-A-T--GGCAACGGCAAATTT------TTT-T-G-AATA-A-A---T-G-ATCA--TGC-T--A-T-TTTTGTTTT-CATGA--TGT-ATCAT-CC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTCTATATGAT--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--at
gi|7 : ACCAAC-T-CGC-TAAATA--CCG-AC-CTGTA---------C-TA-TA---T-A--GG-ATGGCTGCAACA-CC--CAC-C-CACCCT---------TT--AAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TCAATAGT---A--C-------AT-ATA-GGTGA-T-TT---ACTATAT-CATT-----------------CG--CT-A--A--ACTAAGAGGG---TTTTT-ATT-GATA----AAAG-TTTGAGAAAAC---AA-TA---ATAAA-TC-ATTG-CAA--ATA--TTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---C-AC--C------TATTTAACA---------T-------------A-TAAA-CAAT-T-G---GAAAACCA--C-TGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-CGTGAATAAGA--TTTTTCTCAAACC-C--TCGGAC-A------T------GTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---A-TTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTT---GGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CCTTA-AA-AAA-TTGATTCTGTTA-CTTTGAATCATATTATT-------TA--G--ATAAAAGC-AGCCGCTG------CC---TG--ACTTGCC-TCTTTGCTTATGAAAT--AAG---CA-TTAC-AAATGA-CTAG--ATTGCTAA-TAAAACAGC------A------------------AAAATG-C-ACT-A-AC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------ATT-T-G-AA-A-A-A---T-A-ATCA--T-C-T--G-T-TTTCGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-AT-A-GGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--A
gi|8 : A-C-T-CGC-TAAATT--CCTAG---TGTA---------C-TAGTA---T-G-CGG-ATGGCTGTAACA-CC--CTC-C-CCCCCCAACCCCCTCTTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-TAT----GATTGCG--CT-A--A--
gi|8 : cca-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGTC-A-----TT------TTTT-GC-TAT-CCTCCCTT-GAAA--CGCCA---AATTTT-CG--ATTAT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTTTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-ATAC-AAATGAGCTAAA-ATTGCGAATTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggtgataagatttttctcaaaccctcggtcattttttgctatcctcccttgaaacgccaaattttcgattatgaaaaaatgtctatttttagactttttaggtcaattttaaaaatacaacatgaatataagtacacattataaaatttgattttgttactttgaatcatattttttcttgataaaaacagcaattgtacctgacttgcctctttgcttatgaaataaagcaatacaaatgagctaaaattgcgaatta
gi|9 : ccaactcgctaaattcctagtgtactagtatgcggatggctgtaacaccctccccccccaaccccctcttttaagtaagtggtaaataagcatacattttttcatagtacatatatgtgattttagctatatcattgccttatgattgcgctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGTTTA--AA--C--AGTC-ATAT-TTACCAACTTCTTC----------ATAAG----TGTTCTCAAATC-C--TCGGGC-AATTTTTT------TTTT-GT-TAT-CTTCCCTT-GAAACACGTCA---ATTTTT-TTTTATTCA-G---AAAG-AA--TGT-CTGTTT-----AAA-C-TTTTTTTGGTC-TATCAAT------AAGGCAATG-CAA--GACG----AATATAA------------------AT-TTGATTC-GTTA-TTTTGAATCATGTTCAT--------CTTG--ATAAAAAC-AGCCATTG--TA--CA---TG--ACTTGCC-TCTTTGCATATGAAATA-AAG---CA-GTAA-AAATACGTCAGA-ATTGCTATTTAAAACTGC-------AAAAATGGT----A-CC-AAAATA-T-ATT-A-CC--TCG----TTTCT-A-T--GGCAACGG--AAAAT------TTT-T-G-AATA-A-A---T-A-ATGA--TAC-T--G-T-TTTTGTTTT-CATGA--GTT-ACCAT-TC--AAGT-AA--TG-AGC-AT-TTGGACC-AG-CTC-------T--AT--G---AG-----TAA-T-GA-T---TTCT-G--AC-TCCTT-GT--
blockSeqs : A G T C . CGTATGTAANNNNNNNNN AAA . A G . AA T A AACCCCCTC TT T . G G . A A . AA TTATACT T C A A T A CTT TATAC T GT . TAA A G T C TAAA C A A AAG CAT A G C GA AA . ATC AT . G T G G GGA AACCTATTAGTAATTAACAT G A A T TCC A . CA AG TA . G . C A AT A GT A TTTTTTGA T TC T C . T T TT . TAA . AG . TAG G A T . A A GC T GA CATG A G A GG . G T G GTTCTTG AT G T CT AGT AA . G AAA T A C A AAAAAA CTATGT . GA G A . CG T A G . A TTTTTT C C . T C G GT TC A A . T . C . A C CA G CA A . G . C TATATGA . AA CGG TAGGC T . C A . CA . C A AT C . . . A
blockSeqs : A . . . . CGTACTGTAANNNNN . . . . . . . . C . . . . . . . . . . . . . . . . . CT A T . . TCT C . . . . . A T AG . . . . T A . G TT . . . . . . ACCTAATTAAACGAT . . . . . . . . . . . . . . . . . . . ATTTTTT . G . . . T . . . TAA . . . . . . . . . . . . . . A G . . . . C . . . . . . . . . . . . . . A ACAA ACC . G A . . T . . . . A . . . . . . . AA . G G . . . . . . . T . . . . . . . . . A . . . . . . . . . . A . T . . . .
blockSeqs : . . . . . GACCTGTAC . . . . . . . . C . . . . . . . . . . . . . . . . . CT T T . . A . . . . . . A A AG . . . . . A . . T . . . . . . AACCTATTTAACAT . . . . . . . . . . . . . . . . . . . AGTTT . A . . . T . . . . . . . . . . . . . . . . . . A G . . . . T . . . . . . . . . . . . . . G A AC . G . . . . . . . . A . . . . . . . A . G . . . . . . . . A . . . . . . . . . . . . . . . . . . . . A . C . . . .
blockSeqs : . . . . . TGCTGATAC . . . . . . . . . . . . . . . . . . . . . . . . . . TA T T . . T . . . . . . A A AG . . . . . A . . T . . . . . . AACACCTAATTAAC . . . . . . . . . . . . . . . . . . . TG . A . . . T . . . . . . . . . . . . . . . . . . A G . . . . T . . . . . . . . . . . . . . A . AC . G . . . . . . . . A . . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . C . . . .
blockSeqs : . . . . . GACCTGTAC . . . . . . . . . . . . . . . . . . . . . . . . . . CT A T . . A . . . . . . . A AT . . . . . A . . T . . . . . . AACCAATTAACAT . . . . . . . . . . . . . . . . . . . TT . A . . . T . . . . . . . . . . . . . . . . . . A G . . . . C . . . . . . . . . . . . . . G . GC . G . . . . . . . . A . . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . C . . . .
blockSeqs : . . . . . GCACTGTA . . . . . . . . . . . . . . . . . . . . . . . . . . CT T . . . A . . . . . . . A T . . . . . . . . T . . . . . . ACCTATTTAACAT . . . . . . . . . . . . . . . . . . . TT . A . . . A . . . . . . . . . . . . . . . . . . A G . . . . T . . . . . . . . . . . . . . G . AC . G . . . . . . . . A . . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . T . . . .
blockSeqs : . . . . . TAGTGTAC . . . . . . . . . . . . . . . . . . . . . . . . . . CT T . . . A . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . TT . T . . . A . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . A . A . A . . . . . . . . . . . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . C . . . .
blockSeqs : . . . . . CGGTAC . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . A . . . . . . . . A . . . . . . . . . . . . . . TT . G . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . A . . . . . . . . . . . . . . . . . . G . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . TCTAC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . TT . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . T . T . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** NNNCTGTAC************ ********* ** ** *** ** AG* T** AACCTATTTAACAT****************************** ** ** ** N* *** ****** ** **** ** ****** *** ** ** ** *** A** **
originalCons : AAACCA-C-T-CGC-TAAATA--CCC-GC-CTGTA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-T-AG-TCCT-TAG-ATG-TGATTT-TCGA---CAAC--C------T-------A---------T-------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
finalCons : AAACCA-C-T-CGC-TAAATA--CCNNNCTGTAC------------TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAAG-A---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTTT--AG-TCCT-TAG-ATG-TGATTT-TCGA---CAACCTATTTAACAT------------------------------A-TAAA-CAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GTA--TAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
Alignments
lowQualScore : 1111 22222222222 222222222 1111111 11 1 111 11 111 11 11111111 111111111 1 11 1111111111111 111 111111 1111111 11 222222 1111111 1111 111111 11 1111111
lowQualScore : 8 4 4 4 55 2222 4 77777777777 777 4 4 4 4 55 0 4 4 999999999 55 0 99 55 4 4 4 4 4 777 55 3333333 4 7 3 3 7 3 444 77777 5 55 4 77777 8 00 4 4 9999 4 0 8 2 222 777 4 5 5 11 88 5 333 0 33 5 5 5 5 5 44444444 888888888 0 5 5 5 5 888 11 66 66 66 66 4 4 4 4 4 88 3 55 3 6666666666666 3 88 3 3 666 1 4 55 4 444 4 55 4 777 4 4 4 4 4 777777 66 4 66 9999 1 1 8 66 4 4 1 4 4444444 66 4 00 66 777 66 4 3 666 3 3 3 1 111111 2222222 4 55 8 4 4 99 2222 4 4 55 2 666666 3 3 3 3 3 999 444 44 1 6 44 3 3 3 44 3 3 00 3 44 3 3 3 3 3 0000000 44 77 555 77777 3 2 2 777 2 33 2 2 444 44 3 4 55 4 4
lowQualScore : . . . . .. .... . ........... ... . . . . .. . . . ......... .. . .. .. . . . . . ... .. ....... . . . . . . ... ..... . .. . ..... . .. . . .... . . . . ... ... . . . .. .. . ... . .. . . . . . ........ ......... . . . . . ... .. .. .. .. .. . . . . . .. . .. . ............. . .. . . ... . . .. . ... . .. . ... . . . . . ...... .. . .. .... . . . .. . . . . ....... .. . .. .. ... .. . . ... . . . . ...... ....... . .. . . . .. .... . . .. . ...... . . . . . ... ... .. . . .. . . . .. . . .. . .. . . . . . ....... .. .. ... ..... . . . ... . .. . . ... .. . . .. . .
lowQualScore : 9 0 0 0 55 3333 0 22222222222 000 0 0 0 0 55 4 0 0 555555555 55 7 55 55 0 0 0 0 0 000 55 0000000 0 3 6 6 3 6 222 88888 6 55 0 22222 9 66 4 4 4444 4 1 2 0 999 888 4 0 0 99 22 0 888 2 22 0 0 0 0 0 00000000 111111111 0 0 0 0 0 888 99 99 11 11 11 4 4 0 0 0 66 6 00 6 9999999999999 6 33 6 6 444 1 0 55 0 000 0 55 0 888 4 4 4 4 4 222222 11 4 11 4444 9 1 9 11 4 4 4 4 4444444 11 4 66 11 888 11 4 6 444 6 6 6 4 888888 2222222 0 66 0 0 0 55 5555 0 0 55 2 888888 6 6 6 3 3 222 333 66 0 7 66 3 3 1 22 1 1 44 1 22 1 1 1 1 1 0000000 22 33 444 77777 1 9 9 999 9 99 9 9 333 66 2 0 55 4 4
consensus : AAACCA-C-T-CGC-TAAATA--CCNGN-CTG-TA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-TAG-TCCT-TAG-ATG-TGATTT-TCGA---CA--ACCTATT------TAA-C-ATA-TAAACAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
Reference ( family-483 ) : AAACCA-C-T-CGC-TAAATA--CCNNN-CTG-TA---------C-TAGTA---T-A-CGG-ATGGCTGTAACA-CC--CCC-C-CCCCCT---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAAGAGGG--TTTTTT-ATC-GATA----AAAG-TGTGAGAAAACACAAA-GA---ATAAA-TC-ATTG-AAA--ATA-TTTTG-ACA---TCTTGTGTTTT-TAG-TCCT-TAG-ATG-TGATTT-TCGA---CA--ACCTATT------TAA-C-ATA-TAAACAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GN-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|1 : A-C-T-CGC-TAAATATACCTGG-CTA-TA---------CATAGTA---TTA-CGG-ATGGCTGTAACAACC--CCC-C-CCCCCTCC-------TTTTAAGT--AAGTGGTAAATTAAAGACT-A-TATAGTTTTT-TC-ATAGCCTCA--C-------AT-ATAATGTGA-T-TTTTAGCTAGAT-CATTGCCT-AAT----GATTGCG--CTCA--A--A-TAAGAGGGGTTTTTTT-ATC-GATA----AAA--TGTGAGAAA-CACAA--GA---ATAA--TC-ATTG-AAA--ATA-TTTTTTACA---TCTTGTGTTGT--AGCTCCC-TAG-ATG-TGATT----------G--ACCCAT--------AGGC-CTA-TAAACAAT-T-A---GAAACCCAAACTTGGGTCTACCTGTATTTTTA--A---T--AGTCCATCG-ATGC-AACTTATTCATCT-GGTG-AGAGGAG-TTTTTCTCAAACC-C---CG--C-A-----TA------TTTT-GCCTAT-CCTCCCTT-GAAAA-CGCAATTTATTTTT-T---ATTCTTG---AAAACAA--TGTTCTATTTTT---AGA-C-TTTT---GGTCGAATTT-CCTCTCAAAA--AATA-CA---CATG----AATATAAGTTACA--CATTATAACAAC-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTGGTTA--CC---TG--ATTTGCCCTCTTTGCTTATGACATA-AAG---CA-TTAC-AAATGAGCTAGA-ATTGCTATTAAAAACGGC-------AAAAATGGT----A-CCAAAAATG-C-ACT-ACCC--CCGCCTCTTCCC-A-TGAGACAACGGCGAGAAACAT---TTT-T-GAAATA-A-AAATT-A-ATCA--TGC-TCCG-TCTTTTGTTTT-CATGACTCGT-A-CAT-TC--AAAT-AC--TG-AACGGT-ATGGGCCAAA-TTC-------TGAGT--G---AG-----TAG-TGGA-TGGGTCATGG--ACGCCTCT-GCGAGTTA--ATTCAATTGGGCTCCTAAA-CAGAGAATTCA
gi|10 : ccaaA-C-T-CGC-TAAATA--CCGAC-CTG-TA---------C-TAGTA---T-A-CGG-ATGGCTGCAACA-CC--CAC-C-CACCCC---------TTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TC-ATAGT---A--C-------AT-ATA-GGTGA-T-TTT-AGCTATAT-CATTGC----------------G--CT-A--A--A-TAAGAGGG--TTTTTT-ATT-GATA----AAAG-TTTGAGAAA-TACAA--TA---ATAAA-TC-ATTG-CAA--ATA-TTTTG-ACA---TCTTGTGTTTT-TAG-TCCT-TAG-ATG-TGATTT-TCGA---CA--ACCTATT------TAA-C-ATA-TAAACAAT-T-G---GAAAACCA--CTTGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TG------TTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTt
gi|11 : ccaAACCA-AGT-CGC-TAAATA--CCCGTACTG-TAANNNN----N-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NCCCTC---------TTTTAAGT--TAATGGTTAAT--AAG--C-A-TACA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAA----CATTGCG--CT-A--T--A-TAAGAGGA--TTTTTT-TCC-GATA----AAAG-TGTGAT-AAACAC-AA-GA---ATAAA-
gi|12 : TA-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----A--C-AAAAT--C-ACT-A-CC--CCG-----TTCC-A-T--TGCAACGGCAAAAAA------TTT-TCG-AAT--A-A---T---ATTA--TAC--------------------------GT-ATCA--TC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TA--C-GA-----TTCT-G--AC-CCTCT-GT--ATAA--ATTCAA-T-G--TCCT-TA-CAGA-AATTCA
gi|13 : C------ACAGAATGGTCTATG-TC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACGGCAACAAA------ATT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-CTTTGTTTT-CATGA--TGT-ATCAT-TG--AAAT-AC--TG-AAC-GT-ATGGGCC-AT-TTC-------T--AT--G---TG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--ATt
gi|14 : ------TTT-T-G-AATA-A-A---T-A-ATCA--TGC-T--G-T-TTTTCTTTT-CATGA--TGT-ATCAT-TC--AAAT-GC--TG-AAC-TT-AT
gi|14 : actC-AA-TTC-------T--AT--GCGGAG-----TAG---GA-TA--TTCT-G--AC-C-TCT-GT---TA----TT--A-TTG--TCCT-TAACAGAGAATTCAatnnnnnnnnnnnnnnnnnnnnnnnnnggaacaattctatgcggagtaggatattctgacctctgttattattgtccttaacagagaattcatg
gi|15 : actttttgaataaataatcatgctgtttttcttttcatgatgtatcattcaaatgctgaacttatatnnnnnnnnnnnnnnnnnnnnnnnnnggaaA-A-A---T-GTATCA--TGTAT--G-T-TTAAATTT---A-AA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-GT-ATGGGTC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AT-CCTCT-GT--ATAA--ATTTAA-TGG--TCCT-TA-CAGAGAATTCAtg
gi|16 : TT-CATGA--TGC-ATCAT-TC--AAAT-AC--TG-AAC----------------TC-------T--AT--G---AGTAGGCTAG-T-GA-T---TTCT-G--AC-CCCCT-GT--ATAAATATTCAA-TAA--TTCtgtt
gi|17 : --TTTTTCTCAAACC-C--TCGGAC-A-----TTTTTTGATTTT-GA-TAT-TCTCCCTA-GAAAAACGCCA---Aatg
gi|18 : A-AAG---CA-TTAG-AAATGAGCTGGA-ATTGCTAATTAAAACAGC------AAAAAATGGT----
gi|19 : -GA-T---TTCT-G--AC-CCTCT-AT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCA
gi|2 : -T-CGCCTAAA------ATC-CGG-TA---------C-TAGTA---T-A-CGGGATGGCTGTAACA-CC--CTCTC-CCCCCTC--------TTTTAAGT--AAGTGGTAAATT-AAG--C-AGTACA-TTTTT-TG-ATAGT---A--TTTATACTAT-GTA-TGTGA-T-TTTTAGCTATAT-CATTGCCTTAAT----GATTGCG--CT-A--A--AATAAGAGGG--TTTT---ATC-AATATAAAAAAGCTGGGAAGAAACACTAA-GA---ATAAAATC-AATT-AAA--ATAATTTTG-AAAG--TCTTG-GTTTTATGG-GCCT-TAG-ATGGTGATTT-TCGA---CA--ACCAATT-------AA-C-ATA-TAAAAAAT-TTA---GAAACCCA--CTTG-ATCTA--TGTATCTGTG--AAAGT--AGTC-GTCGGATGTCAACGTATCT-TTGCGGTG-ATAA-A--TTTTTCGCAAATC-CGTTCATAC-A-----TT------TTTTTGTCTATTCCTCTCTTCGAGAAACGCCA---ATTTT--CG--ATTCT-G---GAAA-AAAGTGT-CTATTTTT---AGAGC-TTTTTA-GGTC-AATTT-T------AAA--TATATCAAGACATG----AATATAA-T-ACA--CATTATAA-AAT-TTGAGTTTTTTA-CTTTGAATCATATTC-T-------TCATGATATAAAAAC-AGCAATTG--TA--CC---TG--A-TTGCC-TC--TGCTTATAAAGTA-AAGAAACATTTAC-AAATGAGCTAGA-AATGCTAATTAAAAAGGCAAAAAAAAAAAATGAT----A--C-AAAATG-C-AGT-A-CC--CCGT---TTTCC-AGT--GGCACCGG----AGATTTTTTTTT-T-A-AATATA-A---T-A-ATCA--TGC-T--G-T-TTTTGTTTT-CATGA---GT-ATTAT-TTCAAAAT-GCCATG-AAC-GTGATGGGGC-AA-TTC-------T--ATA-A---AG-----TAA-T-GA-T---TTCT-G--AC-CCTGTCGT--ACAA--ATTCAA-TGG--TCCT-TA-CAGAAAATTCtg
gi|20 : A-TATGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GGT
gi|3 : cAAACCA-A-G-TGC-TAAATA--CCCGT-ATG-TAANNNNNNNNN-NNNNN---N-N-NNN-NNNNNNNNNNNN-NN--NNN-N-NNTCCT---------CTTTAAGTTTAA-TGGTTAAT--AAG--CGA-TCCA-TTTTT-TC-GTAGT---A--C-------AT-ATA-TGTAT-T-TTT-AGCTATAT-CATTGCTA-AAA----CATTGCG--CT-ATAA--A-TAAGAGGA--TTTTTT-TTCCGATA----AAAG-TGTGATAAA-CACAA--GACATATAAA-TAGATTG-AAAT-AT--TTTTG-ACA---TCTTGTGTTTT-TAG-TCCT-TAG-ATG-TGATTTGTCGA---CAACACCTAAT------TAA-C-ATA--AAACAAT-T-A---GAA--CCA--CTTGGATCTA--TGTATCGTTA--AA--T--AGTC-CTCG-ATGTCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGACAA-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACG-CA---ATTTTT-CG--ATTCT-G----AAA-AA--TGT-CTATTTTTTAGAAA-CATTTTTA-GGTC-AATTT-TA-----AAA--AATA-CAA--TATG----AATAT-AGT-ACAGGCATTATAA-AAT-TTGATTCTGTTAGTTTTAAATCATATTCTT-------TCTTG--ATAAAGCA-AGCAATTGT-TACTCC---TG--ACTT-CC-TCTTTGCTTATG-AATAGAAG---CA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACAGCA-----AAAAAATGGT----ACCC-AAAATGACGACT-A-CCT-CCG----TTTCCAA-T--GGCAACGGC-TAAAA------TTT-T-G-AATA-ACA---TAA-ACCA--TGCGT--GTT-TTTTGTTTTCCATTA--TGTAATCAT-TCT-CAAT-AC--TG-AAC-GT-ATGGGTC-AA-TCC-------T--ATAAA---AG-----TAGTT-GACT---TTCT-GCAAA-CATCT-GT---TAA--AAT-AA-TGG--TCAT-TA-a
gi|4 : AAACA-C-TTCGC-TAAATA--CTGCA-CTG-TA--------------TA---T-AACGG-ATGG-TGTAACA-CC--CCC-CATCCTCT---------TTTTAAGT--A-GTGGTAA-T--AAG--C-A-TACA-TTTGTATC-ATAGT---AAAC-------AT-ATACTGTGA-T-TTT-TGCTATAT-CATTGC-T-AATATACGAT---G--CT-A--A--A-TAAGAGGG--TTTTTTTATC-GATA----AA-G-TGTGATAAA---CAGA-GA---ATAAA-TG-ATTG-AAAGAAT--TTTTG-ACA---T-TTGTGTTTT-T---TCCTGTAGTAT--T--TTT-TCGAGGACA---CCTAAT------TAAACGATAGTAAACAAT-T-A---GAAACCCAA-CTTGGATTCA--TGTATCTTTACAAA--TTAGGTC-ACGG-ATGCCAA-TTATTC-TTA-GGTG-ATAAGAATTTTTTCTCAAACCAC--TCGGAA-AAGT--TT------TTTT-GA-TAC-CCTCC-TT-GTAAAATTACA---ATTTTTTCG--ATTCT-A---AAAA-AT--TGT-CTATTTTT---AGA-C--TTTTA-GGTC--ATTT-T------AAA--AATA-CAA--CATG-----ATAT-AGTAACA--CATTATAA-AATGTTAACT---TTA-CTTTG-ATCATATTCTTGTTCTTGTCTTG--AT--AAACGAGCAATTG--TA--CCAGTTGAAACTTGCT-CTTTTGCTT---AAATA-AAG---CA-TTACAAAATG-TCTAGACATTGCTAATC-AAACGACACAA--AGAAAATGGT----A-CC-TACA-G-CAACTAA-CCCGCCG----TTGCC-A-T--GGC-ACGGCAAAAAA------TTTCT-G-AATA-A-AG--T-A-ATCATCTGC-T--G-T-TTTTGTTTT-CATGA--TGT-GT-ATCTC--AAATGAC--CG-AAC-GT-ATGG--C-AACTTC-------T--AT--G---AG-----TAG-T-GA-T---CTTT-G--A--CCTCT-GT--ATAA--ATCTCA-TGG--TCC--TA-CAGAGAATga
gi|5 : ccAAACCA-C-T-CGC-TAAATA--CCTG--CTGATA---------C-TAGTAAAAT-A-CG--ATCGCTGTAACA-CC--CCC-C-TCCACT---------TTTTAA-----------AAAT--AAG--C-A-TAC----TTT-TC-ATAGT---A--C-------ATTATA-TATGAATATTT-AGCTATACATATTGACT-AAT----GAT-GCGGTCT-A--TCTA-TAGGA------CTTTT-ATC-GATA----AAAG-TGTGAGAAAACAGAAAAGA---ATAAA-TC-ACTGCAAA--ATA-TTT-G-ACAATCTTTTGTGTTTTTTAG-TCCT-TAG-ATG-TGGTTT-TCGA---C------------------------A-TAAACAAT-T-A---GAAACCCA--CTTGGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATGCCAACTTATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-GA-TAT-CCTCCCTT-GAAAAACGCCA---ATTTTT-CG--ATTCT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--GATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TTTTG--ATAAAAGC-AGCAATTG--TA--CC---TG--ACTTGCC-TAATTGCTTATGAAATA-AAG---TA-TTAC-AAATGAGCTAGA-ATTGCTAATTAAAACGGC------AAAAAATGGT----A-CC-AAAATG-C-ACT-A-CC--CCG----TTTCC-A-T--GGCAACAACAAAATA------TTT-T-G-AATA-A-A---T-A-ATCA--T---T--G-T-T----TTTT-CATGA--TGT-ATCAT-TCA-AAAT-AC--TGAAAC-GT-ATGGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCC-G--AC-CCTCT-GT--ATAA--ATTCAA-TGG--TCCT-TA-CAGAGAATTCAca
gi|6 : ACCAAC-T-CGC-TAAATA--C--AT-CT---A---------C-TAGTA---T-A-TGG-ATGGTTGTAACA-CCAACCC-C-CCCCCTC--------TTTTAAGT--AAATGGTAAAT--AAC--C-A-TACA-TTTTT--C-ACAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-AAT----GATTGCG--CT-A--A--A-TAGGAGGGG-TTTTTT-ATC-GATA----AAAG-TGTGAGAAA-CACAAA--A---ATAAG-TC-ATTG-AAA--ATA-TTTTG-ACA---TTTTGTGTTTC--AG-ACCT-TAG-ATG-TGATTT-TGGA---CA--ACCTATTAGTAATTAA-C-ATA-TAAACCATAC-ATCCGAAACCCA--CTTAGATCTA--TGTATCTTTA--AA--T--AGTC-ATCG-ATACCAACTAATTC-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGAC-A-----TT------TTTT-AT-TAT-CCTCCCTT-GAAAAACGCAA---AATTTT-CG--ATTCC-G---GAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTT-GGTC-AATCT-T------AAA--AATA-CAA--CATGCATGAATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTCTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTT---------------G---CA-T------ATGAAATAAA----GC--ATTA------C------AAA---TGG-----G-CT-AGAAT--T-ACT-A-TC--CCG----TTTCC-A-T--GGCAACGGCAAATTT------TTT-T-G-AATA-A-A---T-G-ATCA--TGC-T--A-T-TTTTGTTTT-CATGA--TGT-ATCAT-CC--AAAT-AC--TG-AAC-GT-ATGGGCC-AA-TTCTATATGAT--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--at
gi|7 : ACCAAC-T-CGC-TAAATA--CCGAC-CTG-TA---------C-TA-TA---T-A--GG-ATGGCTGCAACA-CC--CAC-C-CACCCT---------TT--AAGT--AAGTGGTAAAT--AAG--C-A-TACA-TATTT-TCAATAGT---A--C-------AT-ATA-GGTGA-T-TT---ACTATAT-CATT-----------------CG--CT-A--A--ACTAAGAGGG---TTTTT-ATT-GATA----AAAG-TTTGAGAAAAC---AA-TA---ATAAA-TC-ATTG-CAA--ATA--TTTG-ACA---TCTTGTGTTTT-TAG-TCCT-TAG-ATG-TGATTT-TCGA---C---ACCTATT------TAA-C-ATA-TAAACAAT-T-G---GAAAACCA--C-TGGATCTA--TGTATCTTTG--AA--T--AGTC-ACCG-ATGCCAACTTATTC-TTG-CGTGAATAAGA--TTTTTCTCAAACC-C--TCGGAC-A------T------GTTT-GG-TAT-CCTCCCTT-GAAAAACGCCA---A-TTTT-CG--AATCT-GTAAAAAA-AA--TGT-CTATTTTT---GGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CCTTA-AA-AAA-TTGATTCTGTTA-CTTTGAATCATATTATT-------TA--G--ATAAAAGC-AGCCGCTG------CC---TG--ACTTGCC-TCTTTGCTTATGAAAT--AAG---CA-TTAC-AAATGA-CTAG--ATTGCTAA-TAAAACAGC------A------------------AAAATG-C-ACT-A-AC--CCG----TTTCC-A-T--GGCAACGGCAAAAAA------ATT-T-G-AA-A-A-A---T-A-ATCA--T-C-T--G-T-TTTCGTTTT-CATGA--TGT-ATCAT-TC--AAAT-AC--TG-AAC-AT-A-GGGCC-AA-TTC-------T--AT--G---AG-----TAG-T-GA-T---TTCT-G--AC-CCTCT-GT--ATAA--A
gi|8 : A-C-T-CGC-TAAATT--CCTAG--TG-TA---------C-TAGTA---T-G-CGG-ATGGCTGTAACA-CC--CTC-C-CCCCCCAACCCCCTCTTTTAAGT--AAGTGGTAAAT--AAG--C-A-TACA-TTTTT-TC-ATAGT---A--C-------AT-ATA-TGTGA-T-TTT-AGCTATAT-CATTGCCT-TAT----GATTGCG--CT-A--A--
gi|8 : cca-TTG-GGTG-ATAAGA--TTTTTCTCAAACC-C--TCGGTC-A-----TT------TTTT-GC-TAT-CCTCCCTT-GAAA--CGCCA---AATTTT-CG--ATTAT-G---AAAA-AA--TGT-CTATTTTT---AGA-C-TTTTTA-GGTC-AATTT-T------AAA--AATA-CAA--CATG----AATATAAGT-ACA--CATTATAA-AAT-TTGATTTTGTTA-CTTTGAATCATATTTTT-------TCTTG--ATAAAAAC-AGCAATTG--TA--CC---TG--ACTTGCC-TCTTTGCTTATGAAATA-AAG---CA-ATAC-AAATGAGCTAAA-ATTGCGAATTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggtgataagatttttctcaaaccctcggtcattttttgctatcctcccttgaaacgccaaattttcgattatgaaaaaatgtctatttttagactttttaggtcaattttaaaaatacaacatgaatataagtacacattataaaatttgattttgttactttgaatcatattttttcttgataaaaacagcaattgtacctgacttgcctctttgcttatgaaataaagcaatacaaatgagctaaaattgcgaatta
gi|9 : ccaactcgctaaattcctagtgtactagtatgcggatggctgtaacaccctccccccccaaccccctcttttaagtaagtggtaaataagcatacattttttcatagtacatatatgtgattttagctatatcattgccttatgattgcgctaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGTTTA--AA--C--AGTC-ATAT-TTACCAACTTCTTC----------ATAAG----TGTTCTCAAATC-C--TCGGGC-AATTTTTT------TTTT-GT-TAT-CTTCCCTT-GAAACACGTCA---ATTTTT-TTTTATTCA-G---AAAG-AA--TGT-CTGTTT-----AAA-C-TTTTTTTGGTC-TATCAAT------AAGGCAATG-CAA--GACG----AATATAA------------------AT-TTGATTC-GTTA-TTTTGAATCATGTTCAT--------CTTG--ATAAAAAC-AGCCATTG--TA--CA---TG--ACTTGCC-TCTTTGCATATGAAATA-AAG---CA-GTAA-AAATACGTCAGA-ATTGCTATTTAAAACTGC-------AAAAATGGT----A-CC-AAAATA-T-ATT-A-CC--TCG----TTTCT-A-T--GGCAACGG--AAAAT------TTT-T-G-AATA-A-A---T-A-ATGA--TAC-T--G-T-TTTTGTTTT-CATGA--GTT-ACCAT-TC--AAGT-AA--TG-AGC-AT-TTGGACC-AG-CTC-------T--AT--G---AG-----TAA-T-GA-T---TTCT-G--AC-TCCTT-GT--