lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 44444444 444444444444444 222222 444444444444 44444444 222 2222 11111 2 333 666666666666666 1 11 11111 111111 111 444 33333333333 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 333 2222 22 2 1111 33333333 33 1 111111 2222 11 11 1 11 4 4 1 1 4444444 1 111 222222222222222222222222222222222222222 11 333 1 8888888888888888888 1111 22 1 11 11 2 8888888888888888888888888888888 11 1 2 8888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333333 11 2222222 11 33 1 222 3333 33333 555 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111 22 333333333 222222222222222222222222222 111 333333333333 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222222222222222222 111 11111111 2
lowQualScore : 11 88 4 4 33333333 55 55 55 000000000000000 222222 66 4 4 777 888888888888 55 4 33333333 3 3 3 7 77 555 3 55 3 7 5555 3 22222 3 3 7777 3 555 3 3 3 88 3 3 4 555555555555555 4 4 5 5 4 55 4 44444 55 4 4 55 444444 4 666 8 99 66 777 4 66 66666666666 5 5 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3 6 444 6 2222 7 99 6 99 6 0 0 1 8 1111 8 8 99999999 8 8 88 1 0 888888 7777 33 00 0 66 0 0 0 0 3333333 1 0 2 444 0 8 3 8 8 666666666666666666666666666666666666666 8 55 88 222 8 0 0 0 5 999 8 8 8 6666666666666666666 8 3 5 8 8 7777 44 11 0 33 8 33 5 2 5555555555555555555555555555555 11 6 0 0 6 0 8 5555555555555555555555555555555555555555555555555555555555555555555555555555 8 8 8 6666666666666666666666666 11 2 8888888 99 3 99 3 33 0 777 5555 22222 444 6 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 999999 22 333333333 999999999999999999999999999 888 111111111111 9999 2 5 33 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 444 2 5555 55 99999999999999999999999999999999 2 777 2 77777777 2 3 3 77 9 3 4
lowQualScore : .. .. . . ........ .. .. .. ............... ...... .. . . ... ............ .. . ........ . . . . .. ... . .. . . .... . ..... . . .... . ... . . . .. . . . ............... . . . . . .. . ..... .. . . .. ...... . ... . .. .. ... . .. ........... . . . ................................................................................................... . . . ... . .... . .. . .. . . . . . .... . . ........ . . .. . . ...... .... .. .. . .. . . . . ....... . . . ... . . . . . ....................................... . .. .. ... . . . . . ... . . . ................... . . . . . .... .. .. . .. . .. . . ............................... .. . . . . . . ............................................................................ . . . ......................... .. . ....... .. . .. . .. . ... .... ..... ... . .................................................................................................................... ...... .. ......... ........................... ... ............ .... . . .. .................................................................................................. ... . .... .. ................................ . ... . ........ . . . .. . . .
lowQualScore : 99 44 0 0 55555555 55 00 00 333333333333333 777777 11 4 4 888 888888888888 55 0 55555555 6 6 6 3 99 999 6 00 6 3 6666 6 77777 1 6 7777 6 555 6 6 6 66 6 6 5 000000000000000 0 0 5 7 0 00 0 00000 55 0 0 55 888888 0 777 4 00 11 111 4 11 00000000000 0 5 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 3 0 000 7 0000 3 22 7 88 0 4 8 0 0 8888 0 0 88888888 0 0 00 2 8 000000 2222 88 22 0 00 0 0 0 0 3333333 0 0 2 999 8 0 2 0 0 222222222222222222222222222222222222222 0 88 00 000 0 8 8 8 0 222 0 0 0 0000000000000000000 0 0 0 0 0 0000 44 66 0 88 8 22 2 5 0000000000000000000000000000000 00 0 8 4 0 8 0 8888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 0 8888888888888888888888888 00 2 5555555 22 2 00 2 88 0 555 0000 33333 000 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222222 88 333333333 666666666666666666666666666 888 555555555555 5555 9 7 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 3 1111 55 66666666666666666666666666666666 4 444 0 11111111 5 3 3 22 1 6 0
consensus : TGCAGG-CATGCTTATGAAGAT-ATCTT-AA-GATT-------A--GATATAT--CT--T-----A-GCA-GGG-TCTTACGAC--AC-A--TC-G-TA---AACTTAAT-CC--A-GTCTTT--CG-AAGC-CGTC--CCTAT-C-T-TAA-GA--TTTTT--CT-T--A-GGA-TAT-A-T-CTTA-----ACTTTTAAGA-C----CCCA-ACGGAC--T-TGT-CT-TA-GGAC-GCGT-CTTTGGTTTGGTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGGAAG-TTTTCGGCT-GTTT--TTGGT-GATG-TTCA--TTACAT-T--------T-CTCGAC-AGTG-TT-T-------------------GT------------------AT-----G----------TA-------T-ATG----ATA-A-----------A--ATT-CC-TAATAC-GGTATAGG-TGCTATATAGAT--G-GAACACACATCAGAATAAAAAAAATC-TACA-G-A-TGAAC-ATTAGGG----AA-AAT-TTTCA--TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGG-GGGGGGGGGAAATG-AATAATGGGAT-AAGAGTC-CGAAT---------TGAGC-G--TT------NT-A--G-----TTCTCGC-TAGTGGN-CGT-T-GT-TTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT-AA-CCCGTTCTC-CTTAT-AGAGAGATT--TTGAA---G-TTGG--TTGCGTCAACAAATAGACCAAGTGC-ACGG---G------------------------TGTTTGTTG--A-GAC--C------T----------------------ATA-G-AC-AATAG---GG-AGA-----GG-TCGT-TCAAA--GTGAA------NATA--GAGANAGA--AAAATTATTCA-AATA-TTCTG--TTATT-G--TAAAAGAC-T--GTTGAACAT--GATTTTAAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA------TATTAACA-ATAA-CGC---AAAAT-TTAATG------TTTGA-TTGAA---------TAACAAAA--AN----CTTAAG------AC-AA--CGTTT-T-AAGACA------------TCTTAA--T-TTAA-GAT-A--TA-N--C-TNA----GA-C---C----CTT--T-AT-TTTACA-----TCCT---AAGAT-G---CAT---C--TT---AAG--CT------AG---TCTT---ANGATG-T--GTCN-T--------------AAGA--AT-C---CTCGCTAAG-ATTATATCTTAGG---GTATATC-TTAAGA-T-ANCTTCATAAGCA-T-GCCTC
Reference ( gi|3 ) : TGCAG--CATGCTTATGAAGAT-GTCTT-AA-GAT--------A--GATATAT--CT--T-----G-GC--GTA-TCTTACGA---AT-A--TC-G-TA---AACTTA---TC--A-GT-TTT--CG-AAG--TGTT--CCTAT-C-T-TAA-GA--TTTT---CT-T--A-GGA-TAC-T-T-CTTA-----ACTCTTAAGA-C----CCCA-ACGGA---T-TGT-CT-TA-AGAC-GCGT-CTTTGGTTTGTTTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGGAAGTTTTTCGGCT-GTTT--TTGGCAGATG-TTCA--TTACA--T--------T-CTAGAC-AGTG-G----------------------GT------------------AT-----A----------TA-------C-ATG----ATA-A-----------A--ATT-CC-TAACACGACTATAGG-TCCTATATAGAT--G-GAACACA-ATTAGAATAAAAAAAATC-TACA-G-A-TGAAC-ATT--GG----AA-AAT-TTTCAC-TGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-C-TGA-GGTTTATTGACA-G-GAC-AGATTA-------GAGG-GGAGGGGGCAAATG-AATAATGGGAT-AAGAGTC-CGAAT---------TGAG--G--TT------AT----------TTCTCGC-TAGTGGG-CGT-TCGT-TTGGATTTTGACAAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT-AACCCCGTTTTCACTTAC-AG-GAGATTGATTGA----G-TTGG--TTG-GTCAACAAATAGACCAAGTGC-ACGG---G------------------------T------------------------T----------------------ATA-G-AC-AATAG---G--AGA-----GG-TCGT-TCCAA--GTGGA------GATA--GAGAGAGA--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T--ATTGAACATTGGATTTCAAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTGACA--TAA-CGC---AAAATATTAATG------TTTGAATTGAA---------TAACAAAA--AA----TTTTAG------AC-A---CATTT-T-AAGACA------------TCTTAA--T-TTAA-GAT-A--TA-A--C-TGA----GA-C---C----CTT--T-AT-TTTACA-----TCCT---AAGAT-G---CAT---T--TT---AAG--CT------AG---TCCT---AAGATG-T--GTCC-T--------------AAGA--AT-C---CTCGCTAAG-ATTATATCTTAGG---ATATATC-TTAAGA-T-AGTTTCATAAG-A-T-GCCTCG
gi|12 : TGCAGG-CATGCTTATGAAGAT-ATCTT-AA-GATTA------A--GATATAT--CT--T-----A-GCA-GGG-TCTTACGAC--AC-A--TC-G-TA---AACTTAAT-CC--A-GTCTTT--CG-AAGC-TGT---CCTAT-C-T-TAA-GA--TTTTT--CT-T--A-GGA-TAT-A-T-CTTA-----ACT-TTAAGA-C----CCCA-ACGGAC--T-TGT-CG-TA-GGAC-GCGT-CTTTGG--TGT-----GGTT-----TGGATA-TCAGCA-TG-TTTCACTT-C--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGGAAGTTTT
gi|6 : GCAGG-CATGTTTATGAAGAT-ATCTT-AA-GATTA------A--GATATAT--CT--T-----A-GCA-GGG-TCTTACGA---CTCA--TC-G-TA---AACTTAA--TC--AAGTCTTT--CG-AAGC-TGT---ACTAT-C-T-TAA-GA--TTTTT--CT-T--A-GGA-TAT-A-T-CTTA-----ACTTTTAAGA-C----CCCA-ACGGAC--T-TGA-CT-TA-AGAC-GCGT-CTTTGGTTTG-----------------GATA-TCAGCC-TGTTT-CACTT-C--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGGA-----TTC-------TT--TCGGT-GATG-TTCA--TTACAT-T--------T-CTTGACTAGTT-GTTTGTCTTTT------------GT------------------ATTG---AAC--------TA-------T-ATG----ATA-T-----------ATGATTCCC-TAATAC-AGTATAGG-TGC--TATAGATGAG-AAACAC--ATCAGAAT-AAAAAAATC-TAC--T-A-TGAAC-ATTA-GG----AATAAT-TTTCA--TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-C-TGA-AGTTT-TTGAAATG-AAC-AGATTA-------GAGG-GGGGGGGGGCAATG-AATAATGGGAT-AAGAcg
gi|2 : GCAGGCCATG-TTATGAAGAT-AT-TT-AA-GATT-------A--GATATATTTCT--T-----A-GCA-GGG-TCTTACGAC--AC-A--TC-G-TA---A-CTTA---TCCAA-GC-TTT--CG-AAGC-TGT---CCTAT-C-T-TAG-AAG-TTTT---TT-T--A-GGA-TATAT-T-CTTA-----ACT-TTAAGA-T----CCCA-ACGGACCTT-TGT-CT-TA--GAC-GCGT-CTTTGGTTTG-------GTT-----TGGATA-TCAGCC-TG-TTTCACTT-CT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGGAAG-TTTTCTGCT-GTTT--TTGAT-GATGTTTTA--TTACAT-T--------T-CTCGAC-AGTGTGTGTC------------------GT------------------AT-----GTTATTTGAACTA-------T-ATGATATATA-A-----------G--ATT-CC-TAATACAGC-ATAGG-TTC--TATAGAT--G-GAACACC-ATCAGAAT--AAAAAATCTTACA-G-A-TAAAC-ATTAGGA----AA-AATGTTTCA--TGCCATTAATGA--G--CAAG-t
gi|8 : tagaccaGCAGG-CATGCTTATGAAGGT-ATCTT-AA-GATTA------A--GATATAT--CT--T-----A-GCA-GGA-TCTTACGAC--AC-A--TC-G-TA---AACTTAAT-CC--A-GTCTTT--CG-AAG--CTAT--CCTAT-C-T-TAA-GA--TTTTT--CT-T--A-GGT-TAT-A-T-CTTA-----ACT-TTAAGA-C----CTCA-ACGGAC--T-TGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-----------------GCTA-TCAGCC-TG-TTTCACTT-C--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTGACG-TTTTCGACT-ATTC--TTGGT-GATG-TTCA--TTAC---T--------A-CTCAAC-AGTG-T----------------------GT------------------GT-----G----------Tctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|15 : aGCAGG-CGTGCTTATGAAACT-ATCTT-AA-AATATACCCTAA--GATCTAT--CT--T-----ACGA--GGATTCTTAGGA---CT-A--TC-T-TA---Agtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|22 : caGCAGG-CATGCTTATGAAACT-ATCTT-A-------------A--GATATAC--CC--T-----A-ACATATA-TCTTACGA---ggttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|1 : atccG--CATGCTTATGAAACTCATCT-------T--------A--GATATAC--CCAAA-----G-AC--ATA-TCTTACGA---t
gi|18 : agcagggtggtattacgacacatttcgattaaaaaaaaaaaaccttgaatatcccagctttcgaagcgttgtcctatcttaagattttttcttaggaatatatacttaacttttaagatcccaacggacttatctttaggcgccttctttggtttggtttggttatttttggatatcagccgtgttttcacttctcaaattgtcgggtggtagcatcacgatttttcgcaaactgggaatgtttcggcttgcttttgatgatgatcaatacatgtaacacttttcgactgtgtgttttgtcttaatgtattgaagccatataactgtacaagacaattccctaatacagtttcagggtgctattagatggaacacacatcagaataaaaatctacagaatgaaccattaggaaaatttcgcatgctaataatgtgtgcaagctgtttttttgattcacagctgaagcttttgacatgcggcagattgattgtgggggggggggggggggatggaataatgggataagagtccgaatgagagtttaataaatgagcgcttcttgctaggggcgttgtttggattttgaccatgagcaaggagttggacatttgtatacatgtcggcatgtattttgacccattgttttgaaatttacataacccgttttccttatagagagattttgaaaggttggttgcgtcaacaatagaccaagtgcacggggtgtttggttgtgaaggactcgccactataggacaatagggagaggggtcgtcaaagtgtatacagagatagagagaattattcaaaatatttctgaattattggctaaaagacttagttgaacatgattttaaggaagaaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattattaccacataaagccgcagaatttaatgtttgattgaataaaaaaaaaaatctttaagacaaccattttaaagacatcttaatttaagataattaacctgagggaccctttttatttacatttcctagatggcattctttaagatagtcctaagatgttggttctaagaatccG--CATGCTTATGAAGAT-A-CTT-GA-GAT--------AAGAATATAT--CT--TTACCAG-GT--CTA--CTGAC-----AC-A--TC-G-TA---AACTTAATTCC--A-GTCTTT--CG-AAG--C-TA--CCTAT-C---TAA-GA--Tctg
gi|9 : cagCTTAATAAGAT-ATTTTCAA-GATTTAA----G--GATATAT--CT--T-----A-GTCAGGA-TCT-ACAAGACAT-A--TCAG-TA---AACTTAAA-TC--A-GTCTTT--CG-AAGGCTATC--CTTCT-CGT-TAAAGAGTTTTT---CT-T--A-GGA-TAA-TAT-CTTA-----ACTTTAAAAA-C----CTCAGACGGAC--T-TGT-CT-TA-GGAC-GCGT-CTT--GTTTGGTTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTT-TTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAAGATTTCGCTC-TTTT--TTGGT-GATG-TTCAATTTACAT-T--------T-CTCGAC-
gi|7 : cagggctgcAT-GCCTT-TATGA---------A--CATATAT--CT--T-----G-CA--GGG-TCTTACGG---AC-ACATC-GGTA---AACGTAAT-CC--A-GT-CTTTCCGCAAGA-TGT---CCTAT-C-T-TAA-AT--TTTT---CT-T--ACGGA-TAT-A-C-CTTAT----ACTTATAAGA-T----CTCA-A-GGAC--T-TGTTCTGTA-GGAC-GCG--CTT-------------GGTT-----GGCATAATCAGCC--GTTT-CACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGGA---TTTTCCGCA-GTTT--TTGGT-GATG-TTCA--TAACA--T--------TTCTCGAT-AGTG-T----------------------GTGTCTTATGTAATTGAACTAT-----A----------TA-------T-ATT----ATG-A-----------AG-ATT-CCCTAATAC-AGTATAGG-TC---TATAGAT--GCGAACACACATCAGAATAAAACAATTT-CTCA-G-A-TGAAC-ATT--AGCGAAAA-AAT-TTTCA--TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATC-TGACAGTTT-TTGACATG-GACTAGATgtattgtctcttatgtattgaacatatagccattgtaatttgaggtgtatttagtgttgcaggatattatacat
gi|4 : cATATAT--CT--T-----A-GCA-GGG-TCTTACGAC--AC-A--TC-G-TATTAAACTTAAT-CC--A-TC-TTT--CG-AAG--CTAC--CCTAT-C-T-TAA--A--TTTTATTCT-T--A-GGA-TTA-T-A-TTTA-----ACT-TTAAGAAC----CCCA-ACGGA---CGTGT-CT--A-GGACCGCGT-CTGTG-TTTGGTTTTGG-TT-----TGGATA-TCAGCC-TG-TTTCACTTCC--ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGGAAGGTTTTC-GCT-GTTT--TTG---GATG-AGCA--TAACATTT--------T-TTCGAC-AGTG-GTGTGTCAACTGTGTGTGTCTATGT------------------ATTGAACA----------TA-------TAATGT---ATATA-----------T--ATTCCC-TAATAC-AGTATAGG-TGCTATA---AT--G-GAACACACATCGGAAT-AAAAAAATA-TACATGCA-TGAAA-CTTAGGA----AA-AAT-TTCCA--TGCCA--A------------------TTTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGTGGAGGGG----ATG-AATAAT-GGATAAAGAGTC-CGAA----------TGAG--GT-TT------ATAAATGAGCGCTTTTTGC-TAGT-GT-CGT-T-GT-TTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAACCCGTTC---CTTAT-AGAGAGATTGAAAGA----G-TTGG--TTG-GTCAACAATGAGACC-AGTGC-ACGG---G------------------------TGTTTGTTGGAAGGACCGCTCAA--T----------------------ATA-GAAC-AATAG---GGAAGA-----GG-TCG--TCAAA--GTGAA------TACA--GAGATAGATGAGAATTATCA--AATA-TTCTA--TTATTCG--CAAAAGAC-A--GTTGAACA----ATTTTAAAA
gi|1 : C--A-GC-TTT--CG-AAG--CGTTGTCCTAT-C-T-TAA-GA--TTTTTT-CT-T--A-GGAATAT-A-TACTTA-----ACTTTTAAGA-T----CCCA-ACGGAC--T-TAT-CT-TT-AGGC-GCCTTCTTTGGTTTGGTTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTT-CTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGGGAATGTTTCGGCTTGCTT--TTGAT-GATG-ATCA--ATACA--TGTAACACTT-TTCGAC-TGTG-T----------------------GTTTTGTCTTA---------AT-----G----------TATTGAAGCC-AT-----ATA-ACTGTACAAGACA--ATT-CCCTAATACAGTTTCAGGGTGCTAT-TAGAT--G-GAACACACATCAGAATAAAAA---TC-TACA-G-AATGAACCATT--AG----GA-AAA-TTTCGCATGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-C-TGA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGG-GGGGGGGGGGGATGGAATAATGGGAT-AAGAGTC-CGAAT----------GAGA-G--TTTAATAAATGAGCGC----TTCTTGC-TAG-GGG-CGT-T-GT-TTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATT--------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT-AA-CCCGTTTTC-CTTAT-AGAGAGATT--TTGAAAG-G-TTGG--TTGCGTCAAC-AATAGACCAAGTGC-ACGGGGTG------------------------T------------------------TTGGTTGTGAAGGACTCGCCACTATAGG-AC-AATAGGGAG--AGG-----GG-TCG--TCAAA--GTGTA------TACA--GAGATAGAG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGAC-TTAGTTGAACAT--GATTTTAAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAA-AGCCGCAGAAT-TTAATG------TTTG-ATTGAA---------TAAAAAAA--AAAATCTTTAAG------AC-AAC-CATTT-TAAAGACA------------TCTTAA--T-TTAA-GAT-AATTA-AC-C-TGAGG--GA-C---C----CTT--T-TTATTTACATT---TCCT----AGATGG---CATTC-T--TT---AAG--AT------AG---TCCT---AAGATG-TTGGTTC-T--------------AAGA--AT-C---CTCG-TAAG-A-TATGTCTTTGG---GTATATC--TAAGA-TGAGTTTCATAAGCA-T-GCCTgagagaaagagagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|10 : agcagggtggtattacgacacatttcgattaaaaaaaaaaaaccttgaatatcc-TTT--CT-AAGC-TGTC--CCTATTC-TGTAA-GA--TTTTT--CT-TTAA-GGAATAT-A-T-CTTA-----ACT--TAAGA-C----CTCA---GAAC--T-TGT-CC-TATGGAC-GCGT-CT---GTTTGTGTTTGGCCA-----TCAACG-TAAGCC-TGTTT-CACTT-C--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGAAAGTTTCCCGGCT-GATTCCTTGT--GATG-TTCA--TTAg
gi|14 : c-C-T-TAAAGA--TATA---CCAT--A-AGA-TAT-A-T-CTTACGAGGATTCTTAAGA-CACATCTTA---GGA---C-TAT-CC-TA-AGAT-GCAT-CTTAGGgaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|5 : tcttaagacagcatttaagacatctaaatttaaaatataactgagattcttttattttacat--TTTT---CT-T--A-GGA-TAA-A-T-CTTA-----ACT-TTAAGA-C----TTCA-ACGGAC--T-TGT-CT-TA-GGAC-GCGT-CTTTGCTTTGGTTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTT-T--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGGAAG-TTTCCAGCTCTTTT--TTGGT-GATG-TTCA--TTACAT-T--------T-CTTGAC-AGTG-T----------------------GT------------------catgc
gi|5 : tTC-CC-TAATAC-AGTATAGG-TGCTATA--GAT--G-GAACCCACATCAGAActcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|2 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagct-GGGGGGGGCAA-TG-ACTAATAGGAT-AAGAGTTATGAAT---------TAGC--G--CT------GT----------TCTTCGC-TAGTGGT-CGTAT--T-TTGGATTTTGACCATCA-AGC-AAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT-AA-CCCGTTC---CTTA-----GAGA---------------TGG--TTGCGTC-AC-AATAGACAAGGTGC-ACGG---GGTGTTTGTTGTGAAGACTCGCTCAC------------------------T----------------------ATA-G-AC-AATAG---G--GAACACAGGG-TCGT---CAAACGTGGA-------ATA--aataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|11 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATG-AATAATGGGAT-AAGAGTC-CGAATGGGTTATGATGAGC-GCTTT------TT----------TTCTCGTATAGTTGGTCGT-T-GT-T--GATTT-GACCAT-G-AGCCAAGGAG-TTGGAC-A-TTTGTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA--C-TTGTTTTG-AAA--TTTCCA--AATCC-----TC-CTTATGAG-AAGAT---TTGAAGACG-TTGATCTTG-GTGAAC-AATAGACCAAGTGCAACGG---G------------------------TGTTTGTTGTGAAGACGTCGTTCACT----------------------ATA-G-ACGAATAG---G--AGA-----AG---GTATTCAA--ATGAA------AATA--ACGAAAGG--AAAAcattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|5 : GAGTT-TTAAA---------TGAGCCG--CT------TG----------TTCTCGC-TA-TGG----T-CCGTAGTGG-TTTTGACCAT-GCAGC-AAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTGTTTgga
gi|23 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtGA----GATTGG--TTG-GTCAACAA-TAAACCAAGTGC-ATGG---G------------------------gatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|20 : ga------------------------T----------------------ATA-G-AC-AATAG---GG-AGA-----GGGTTGT--CAAA--ATGAATACAAAGATA--GAGAGA-A--AAAATTATTCA-AATA-TTCT---gtgtttgttgtgaag
gi|2 : acGA------GATAAAGAGAGAGA--AAAA-TATTCA-AATA-TCTA---TTATT-GC-TAAAGGACTT--ATTGAACAT--GATTTa
gi|16 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacaCA------TATTAACAAATAA-C-C---TACATTGTAATG------TTTGA-TTGAAA--------TAACAAAA--AT----CTTAAG------AC-AA--CAGCT-G-AAGACA------------CTTGAA--T-TTAA-GAT-A--TC-G--C-T-------A-C---C----CTT--T-tttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|4 : A------TACC-ACA--TAAACGC---AAA-T-TTAATG------TTTGA---GAA---------TAACAAAA--AT----CTTAAG------AC-AAA-CATTT---ATGACA------------TCTTAA--T-TTAA-GAT-A--TA-A--C-TGA----GA-C---C----CTT--T-TA-TTTACA-----TCCT---AA-AT-GA--CAT---C--TT---AAGATTT------AG---TCCT---AAGATA-T--GTCCTT--------------AAAA--Ataatttaatcctaagatgcat
gi|17 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaattACA--TAA-TGC---AAA-T-TTAATG------TTTGA-TTGAA---------TAACAAAA--AT----CTTAAG------ACAA---CA-TT-T-AAGAGA------------TCTTAA--T-TTAA-GAT-A--TA-A----TGA----
gi|8 : ttttaagaagagagagagagagagattaagtattaccA--TGG-CGA---AAAATCGTAATGCCATGATTTGAAGTGAAACAGGCTGATAGCCAAACCAA--------AG------AC-G---CGTCC-T-AAGACAAGTCCGTTGAGGTCTTAAA-G-TTAA-GAT-A--TA-A--CCTAA----GA-----------------A-----AAA-----TCTT---AAGATAG---GATAGCT--TCGA-AAGA-CTGGATTAAG---TT-T---ACGATG-T--GTCG-T--------------AAGA---T-C---CT-GCTAAG-AT-ATATCTTA---------ATC-TTAAGA-T-ACCTTCATAAGCA-T-GCCT
gi|13 : agcTAATG------TTTGATGTGAA---------TAAACAAA--AA----TCTTAAGAAACAAC-A---GATCC-T-AGGACC------------TCTTAA--T-TTAA-GATAA--TC-G--C-TT-----GC-T---C----CTT--TGAA-TTTACA-----TCCT---AAGAttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccattgTTAAG------AC-AG--CATTT---AAGACA------------TCTAAA--T-TTAA-AAT-A--TA-A--C-TGA----GA-T---T----CTT--TTAT-TTTACA-----TCCT---AAGAT-G---CAT---C--TT---AGG--AT------AG---TCCT---AAGATG-T--GTCT-T--------------AAGA--AT-C---CTCG-TAAG-A-TATATCTTATG---GTATATCTTTAAGag
gi|6 : tcAG------AC-G---CGTCT-T-AAGTCAAGTCCGTTGGGGTCTTAAAAG-TTAA-GAT-A--TATC--C-TAA----GA-AAAAT----CTTAAG-AT-AGTACA-----GCTTCGAAAGAC-------T---TGATT---AAG--TT--------------T---ACGATG-A--GTCG-T--------------AAGA-----C---CCTGCTAAG-AT-ATATCTTA---------ATC-TTAAGA-T-ATCTTCATAAACA-T-GCCTcatgc
gi|6 : gcAG------GC-A---TGTTTATGAAGATA------------TCTTAA--GATTAA-GAT-A--TA-T--C-TTA----G-------------------------CAGGG--TCTT---ACGAC-T---CAT---C--GT---AAA--CTTAATCAAG---TCTTTCGAAGCTG-T--A--C-T--------------A-------------TC-TTAAG-ATTTT-TCTTAGG---ATATATC-TTAAttggtttggatatcagcctgtttcacttcaaatcgttgtaaggcatcaacgattttcgccactggattctttcggtgatgttcattacatttcttgactagttgtttgtcttttgtattgaactatatgatatatgattccctaatacagtataggtgctatagatgagaaacacatcagaataaaaaaatctactatgaacattaggaataattttcatgcaattaatgtgcaagctgtttttgattcccatctgaagtttttgaaatgaacagattagagggggggggggcaatgaataatgggataagat
gi|2 : gcAG------AC-AAAACATTT---AAGACA------------TCTTAA--T-TTAACGATCA--CA-AAGG-TGA----GAGCGCGC----TTT--T-AT-TTTACA-----TCCT---ATAAT-G---GAT---C--TT---cttttaagaccccaacggacttgacttaagacgcgtctttggtttggatatcagcctgtttcacttcaaatcgttgtaaggcatcaacgattttcgccactggattctttcggtgatgttcattacatttcttgactagttgtttgtcttttgtattgaactatatgatatatgattccctaatacagtataggtgctatagatgagaaacacatcagaataaaaaaatctactatgaacattaggaataattttcatgcaattaatgtgcaagctgtttttgattcccatctgaagtttttgaaatgaacagattagagggggggggggcaatgaataatgggataagat
gi|12 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctcta-AAGATA------------TCTTAA--GATTAA-GAT-A--TA-T--C-TTA----G------CAGGGTCT--T-AC-GACACA-----TCGT---AAA-------------C--TT---AAT--CC------AG---TCTT---TCGAAGCT--GTCC-T--------------A-------------TC-TTAAG-ATTTT-TCTTAGG---ATATATC-TTAA
gi|8 : tgcaggcatgcttatg-AAGGTA------------TCTTAA--GATTAA-GAT-A--TA-T--C-TTAGCAGGA-T---C------T--T-AC-GACACA-----TCGT---AAA-------------C--TT---AAT--CC------AG---TCTT---TCGAAGCT--ATCC-T--------------------AT-C-------TTAAG-ATT-TTTCTTAGG---TTATATC-TTAActttaagaccccaacggacttgtcgtaggacgcgtctttggtgtggtttggatatcagcatgtttcacttcaaatcttggtagcatcacgaaatcacgatttttcgccactggaagttttcg
gi|12 : agcaggcatgcttatg------------TCTTAAA-G-TTAA-GAT-A--TATC--C-TAA----GA-----------------A-----AAA-----TCTT---AAGAT-AGGACAG---C--TTCGAAAGA-CTGGATTAAG---TT-T---ACGATG-T--GTCG-T--------------AAGA-----C---CCTGCTAAG-AT-ATATCTTA---------ATC-TTAAGA-T-ATCTTCATAAGCA-T-GCCTctttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|14 : tgc--T-TAAA-GAT-A--TA-C--CATAA----GA-----------TA--T-AT-CTTACGAGGATTCTT---AAGAC-A---CAT---C--TT---AGGA-CT------A----TCCT---AAGATG-C--ATCT-TAGGATGTAAAATAAAAGA--AT-----CTC----AG--TTATATTTTAAATTTAGATGTC-TTAA-A-T-GCTGTCTTAAG-A-ccccaacggacttgtcgtaggacgcgtctttggtgtggtttggatatcagcatgtttcacttcaaatcttggtagcatcacgaaatcacgatttttcgccactggaagttttcg
gi|14 : TATA-----CCAT---AAGAT-A---TAT---C--TT---ACG----------AGGATTCTT---AAGACA-C--ATCT-T--------------AGGACTAT-C---CT----AAG-AT-GCATCTTAGG---ATGTAgcatgc
gi|2 : tcttaagacagcatttaagacatctaaatttaaaatataactgagattcttttattt-----TTCT---AAGAT-AGGACAG---C--TTCGAAAG--CTTGGATAAG---T--T---ACGATG-T--GTCG-T--------------AAGA-----C---CCTGCTAAGAAATATATC-TA---------ATC-TTAA-A-T-ATCTTCATAAC-A-TGGCCTtctttaagcatgc
gi|4 : tagaccagc---AAGAT-G---GAT---T-------AAG--TT-----------TAAT---ACGATG-T--GTCG-T--------------AAGA-----C---CCTGCTAAG-A-TATATgtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|18 : --TT---AAG--TT--------------T---ACGATG-T--GTCA-G--------------TAGA-----C---CTGGTAAAG-A-TATATTCT---------TATC-TCAAG--T-ATCTTCATAAGCA-T-GCCTtcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|15 : c---AAA--CT------A----TCTT---AAAATA-T--ACCC-T--------------AAG---AT-CTATCTTACGAGG-AT----TCTTAGG---AC-TATC-TTAAGG-T-TGCTCCATttccagtctttcgaagctacctatctaagat
gi|15 : cagcaggcgtgcttatgAG--C-------AA---CCTT---AAGATA----GTCC-T--------------AAGA--AT-C---CTCG-TAAG-AT-AGATCTTAGG---GTATATT-TTAAGA-T-AGTTTCATAAGCA-C-GCCTccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|14 : cagc---AAGATA-T--ACCA-T--------------AAGAT-ATAT---CTTACGAGG-ATT----CTTAAG---ACACATC-TTAGGACT-A---TCCTAAG-A-T-GCATCccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|22 : tcttaagacagcatttaagacatctaaatttaaaatataactgagattcttttattttacatcctaa--AT-C---CTCG-TAAG-AT-ATATGTTAGG---GTATATC-TTAAGA-T-AGTTTCATAAGCA-T-GCCTtaagcatgc
gi|24 : G---GTATATC-T-AAGA-T-AGTTTCATAAGCATT-GCCTgct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Unaligned ( gi|21 ): AAATTGAGCAAGTGCGACGGGGTGTTTGTTGTGAAGACTCGCTCGATACTAGGAAATGGGATAGGGTAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 222222 1111111111 111 11111 1 11 11111 11111 111 1111111 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111111 11 11111 111 11111 3333333 11 99999999999999999999999999999999 4444444444444444444 1111 22 4444444444444444444 2 11111 1 1 00000000000000000000000000000 222222222222 2 22222222 222 1 22 22 111 11 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 111 1 11111 2222222 11 111 1111 11111 1111 11111111 1111 111 3 22 1111
lowQualScore : 5 5 5 222222 4 66 4 777 99 4 55 4 99 777 7777777777 4 777777 3 3 3 777 5 9 3 3 3 44 3 55 3 55 3 7 7 7 3 6 3 55 3 3 3 3 3 3 333 88 22222 3 3 3 4 77 3 22222 55 3 3 55 22222 3 3 2 3 3 3 3 22 111 4 4 55 3333333 4 55 99 4 00000 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 2 4 66 4 444444 44 4 99999 5 5 5 5 5 5 5 444 6 6 6 1 22222 2 6 99 8 8 8 8 0 8 8 2222222 00 6 5 6 33333333333333333333333333333333 6 6 6 1 6 6 3 6 6 6 6 6 4444444444444444444 6 2 6 4444 777777 6 99 1 99 6 2 33 6 1111111111111111111 77 0 1 9 0 22222 0 5 5 5 88888888888888888888888888888 5 5 5 222222222222 77 6 5 0 7 1 66666666 0 0 88 8 0 444 0 33 33 777 33 0 3 999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 4444 444 7 6 3 6 6 6 6 55555 66 5 1111111 11 5 888 66 1 5555 00000 5 7777 2 66 0 5 5 99999999 5555 3 1 111 8 1 0 11 2222 6
lowQualScore : . . . ...... . .. . ... .. . .. . .. ... .......... . ...... . . . ... . . . . . .. . .. . .. . . . . . . . .. . . . . . . ... .. ..... . . . . .. . ..... .. . . .. ..... . . . . . . . .. ... . . .. ....... . .. .. . ..... .......................................................................................... . . . .. . ...... .. . ..... . . . . . . . ... . . . . ..... . . .. . . . . . . . ....... .. . . . ................................ . . . . . . . . . . . . ................... . . . .... ...... . .. . .. . . .. . ................... .. . . . . ..... . . . . ............................. . . . ............ .. . . . . . ........ . . .. . . ... . .. .. ... .. . . ................................................................................. . .... ... . . . . . . . ..... .. . ....... .. . ... .. . .... ..... . .... . .. . . . ........ .... . . ... . . . .. .... .
lowQualScore : 7 7 7 000000 4 11 0 000 55 0 55 0 55 000 5555555555 0 888888 6 6 6 222 1 6 6 6 6 22 3 00 6 00 6 3 3 3 6 8 6 00 6 6 6 6 6 6 999 66 77777 6 6 3 4 33 6 77777 00 6 6 00 77777 6 6 1 6 6 6 6 11 111 0 0 55 0000000 0 55 55 0 00000 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 4 4 11 7 777777 44 4 33333 7 7 7 7 7 7 7 111 7 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 5555555 55 7 7 7 77777777777777777777777777777777 7 7 7 0 7 7 2 7 7 7 7 7 8888888888888888888 7 5 7 2222 000000 7 22 0 22 7 5 22 7 9999999999999999999 99 9 7 4 4 55555 0 0 0 0 11111111111111111111111111111 7 7 7 333333333333 99 0 7 3 5 0 00000000 8 8 88 0 8 222 0 88 88 000 88 7 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 2222 000 3 7 3 7 7 7 7 22222 99 0 0000000 22 0 888 99 0 9999 33333 7 0000 5 99 2 7 7 99999999 0000 0 0 888 0 0 0 22 5555 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGATT---AAG-ATATAT--CTTAG-CAGGGTC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTAT-C-T-TAA-GA-TTTT--T-CTT--A-GGA-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-CG--AC--AG-T-----GTGT-----------T----------CG---T----AT-G----------TATATG----------A-------TAA-----------AT--ATTCCCTAATACAG-TAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TGA-AC-AT-TAGGA--AAAAT-TTT-CA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-CT-GA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGATAA-GAGTC-CGAAT---------TGAGC-GCTT--T-G--------TTCT-CGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTAT----TT-GANC-ATTGTTTTG-AAA--TTTACAT--AA-CCCGT-TTC-CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCAACAAATAGACCAAGTG-----C-ACGGGG-TGTTT-GTT-----GTGA-AGACTC--C---C------TATA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GTGAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCTA--TTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTANCACA-TAA---CGCAAAAT-T-TAATGTTTG-AT-TGAA-TAA-CAAAAA----TCTTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---AT--AGCTGA--GA---C-CC-TTT-AN-TTTACA--TCCTAAGAT-G-CAT--C-----TTAAG--NTAGTCCTAAGATGT--GT-CCTAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGATT---A-G-ATATAT--CTTAG-CAGGGTC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--CGTCCCTAT-C-T-TAA-GA-TTTT--T-CTT--A-GGA-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-CG--AC--AG-T-----GT-------------T----------TG---T----AT-G----------TATATG----------A-------TAA-----------A---ATTCC-TAATACGG-TAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TGA-AC-AT-TAGGG--AAAAT-TTT-CA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-CT-GA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGGGGGGGGGGAAATG-AATAATGGGATAA-GAGTC-CGAAT---------TGAGC-GTTN--TAG--------TTCT-CGC-TAG-TGGNC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTAT----TT-GANC-ATTGTTTTG-AAA--TTTACAT--AA-CCCGTTCTC-CTTATAGAGAGATT--T--TGA---A---GTTGG--TTGCGTCAACAAATAGACCAAGTG-----C-AC-GGG-TGTTT-GTT-----G----AGAC--------C------TATA-G-AC-AATAGGG-A----G--A--G--GTCGTTCAAA-GTGAANATAGAGANAG-----A--AAAATTATTC-AAATA-TTCTG--TTATT-G--TAAAAGACT--GTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA------TATTAACA-A-TAA---CGCAAAAT-T-TAATGTTTG-AT-TGAA-TAA-CAAAAA----NCTTAAGA--C-AA--CG--TTTT-AAGACATCTTAATTTAA-GAT---AT--ANCTNA--GA---C-CC-TTT-AT-TTTACA--TCCTAAGAT-G-CAT--C-----TTAAG--CTAGTCTTANGATGT--GT-CNTAAGAATCCTCGCTAAGATTATATCTTAGGGTATATCTTAAGAT-ANCTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGGTGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TAT-C-T-TAA-GA-TTTT--TTCTT--A-GGAAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGGC-GCCTTCTTTGGTTTG-GTTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTTCTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GAA-TGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACATGTAACACTTTT-CG--AC--TG-T-----GTGTT----------T----------TG---TCTTAAT-G----------TAT-TG----------AAGCCATATAACTGTACAAGACA---ATTCCCTAATACAG-TTTCAGGGTGC-----TAT-TAGATG-GAACACACATCAGAATAAAAA-----TC-TACA-G-AATGA-ACCAT-TAGG---AAAAT-TTCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-CT-GA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGATAA-GAGTC-CGAAT----------GAGA-GTTTAATAAATGAGCGCTTCT-TGC-TAG--GGGC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTT----------------GTA-TACATGTCGG-CATGTAT----TTTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC-CTTATAGAGAGATT--T--TGA---AAG-GTTGG--TTGCGTCAAC-AATAGACCAAGTG-----C-ACGGGG-TGTTTGGTT-----GTGAAGGACTCGCCA--C------TATAGG-AC-AATAGGG-A----G--AGGG--GTCG-TCAAA-GTGTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACA-TAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAA-AAAAAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GATA--ATTAACCTGAGGGA---C-CC-TTT-TTATTTACATTTCCT-AGATGG-CATTCT-----TTAAG--ATAGTCCTAAGATGTTGGT-TCTAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTTT--T-CTTTAA-GGAAT-ATAT-CTTA-ACTT--AAGACCTCA---GAAC--TTGT-CC-TATGGAC-GCGT-CT---GTTTGTGTTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTTC--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AAG-T-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGAA-------ATCT-CGCCGC--AGCT-----GT-------------G----------TGTCTT----AT-G----------TACA------------A-------TAA-----------g
gi|10 : ACGCACATTAGAATAAAAACCTCATC-TACA-G-A-TGACAC-ATGTAGGA--AAAActgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAAATG-AATAATGGGATAA-GAGTC-CGAATGGGTTATGATGAGC-GCTT--TTT--------TTCT-CGTATAGTTGGTC-GTT-GTT--GA-TTTGACCAT-G-AGCCAAGGAG-TTGGAC-A-TTTGTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTTT----TT-GAC---TTGTTTTG-AAA--TTTCCA---AA-TC----CTC-CTTAT-GAGAAGAT--T--TGA---AGACGTTGATCTTG-GTGAAC-AATAGACCAAGTG-----CAAC-GGG-TGTTT-GTT-----GTGA-AGACGTCGTTCAC------TATA-G-ACGAATAGGA-G----A--A--G--GT-ATTCAAA--TGAAAATAACGAAAG-----G--AAAAa
gi|12 : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGATT---AAG-ATATAT--CTTAG-CAGGGTC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTAT-C-T-TAA-GA-TTTT--T-CTT--A-GGA-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGAC-GCGT-CTTTGG--TG----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTTC--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AAG-T-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-TAAACAAAAA----TCTTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--AT--CGCTT---GC---T-CC-TTTGAA-TTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccCTTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---AT--AACTGA--GA---T-TC-TTTTAT-TTTACA--TCCTAAGAT-G-CAT--C-----TTAGG--ATAGTCCTAAGATGT--GT-CTTAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : t-TTTA-A--CCATAAAA--G-CAT--CAAGGATGGAG--C-AACCTTAAGATA---GT-CCTAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCT
gi|16 : cagcCA------TATTAACA-AATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAATAA-CAAAAA----TCTTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---AT--CGCT-----A---C-CCTTTT-AA-TTTA-A--TCCTAAGAT-G-CAT--tccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACA-TAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-TAA-CAAAAA----TCTTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---AT--A
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGATA---A-GAATATAT--CTTTA-CCAGGTC----TACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C----TACCTAT-C---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGATT---A-G-ATATATTTCTTAG-CAGGGTC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TAT-C-T-TAG-AA-GTTT--T-TTT--A-GGA-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-AC-GCGT-CTTTG------GTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AAG-T-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACAT-------TTCT-CG--AC--AG-T-----GTGTG----------T----------CG---T----AT-GTTATTTGAACTATATGATAT------A-------TAA-----------G---ATTCC-TAATACAG-CAT--AGGTTC-------TATAGATG-GAACAC-CATCAGAAT--AAAA--AATCTTACA-G-A-TAA-AC-AT-TAGGA--AAAATGTTT-CA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATG-ACTAATAGGATAA-GAGTTATGAAT---------T-AGC-GCT-----G--------TTCTTCGC-TAG-TGGTC-GTA-TTTTGGATTTTGACCATCA-AG-CAAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTAT----TT-TGAC-ATTGTTTTGAAAA--TTTAAAT--AA-CCCGT--TC-CT--TAGAGA---------------------TGG--TTGCGTC-AC-AATAGACAAGGTG-----C-ACGGGG-TGTTT-GTT-----GTGA-AGACTCGCTCA-C------TATA-G-AC-AATAGGG-AACACA--G--G--GTCG-TCAAACGTGGA-ATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGAGAG-----A--AAAAT-ATTC-AAATA-T-CTA--TTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--cattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACAA--AGGTGA--GAGCGCGCT-TTT-AT-TTTACA--TCCTATAAT-G-GAT--C-----TTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctc--------C------TATA-G-AC-AATAGGG-A----G--AG-G--GTTG-TCAAA-ATGAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT
gi|21 : aAAATTGAGCAAGTG-----CGAC-GGGGTGTTT-GTT-----GTGA-AGAC--------a
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTtcgctcgatactaggaaatgggatagggtat
gi|23 : GA---G---ATTGG--TTG-GTCAACAA-TAAACCAAGTG-----C-ATGGGG-TGTTT-GTT-----G----TGAgct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCTag
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----A-G-ATATAT--CTTGG-C-GTATC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG-T---GTTCCTAT-C-T-TAA-GA-TTTT----CTT--A-GGA-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGAC-GCGT-CTTTGGTTTG-TTTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACAT-------T-CT-AG--AC--AG-T-----GG-------------------------G---T----AT-A----------TACATG----------A-------TAA-----------A---ATTCC-TAACACGACTAT--AGGTCC-----TATATAGATG-GAACACA-ATTAGAATAAAAAA--AATC-TACA-G-A-TGA-AC-AT-T--GG--AAAAT-TTT-CACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-CT-GA-GGTTTATTGACA-G-GAC-AGATTA-------GAGGGGAGGGGGCAAATG-AATAATGGGATAA-GAGTC-CGAAT---------TGAG--GTTA--T----------TTCT-CGC-TAG-TGGGC-GTTCGTTTGGATTTTGACAAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTAT----TT-GAGC-ATTGTTTTG-AAA--TTTATAT--AACCCCGTTTTCACTTACAG-GAGATTGAT--TG----A---GTTGG--TTG-GTCAACAAATAGACCAAGTG-----C-AC-GGG-T-------------------------------------TATA-G-AC-AATA-GG-A----G--A--G--GTCGTTCCAA-GTGGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGACT--ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTGAC--A-TAA---CGCAAAATAT-TAATGTTTGAAT-TGAA-TAA-CAAAAA----ATTTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---AT--AACTGA--GA---C-CC-TTT-AT-TTTACA--TCCTAAGAT-G-CAT--T-----TTAAG--CTAGTCCTAAGATGT--GT-CCTAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : -ATATAT--CTTAG-CAGGGTC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTAT-C-T-TAA--A-TTTTATT-CTT--A-GGA-TTATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-CT--A-GGACCGCGT-CTGTG-TTTG-GTTTT-GGTT-----TGGATA-TCAGCC-TGTTT-CACTTCC-ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-CG-CT-G-TTTTTGG---ATG-AGCA--TAACAT-------TTTTTCG--AC--AG-T-----GG-------------TGTGTCAACTGTG---T----GT-G----------TCTATGTATTGAACATA-------TAATGTATAT----AT--ATTCCCTAATACAG-TAT--AGGTGC-----TATA---ATG-GAACACACATCGGAATAAAAAA--A-TA-TACATGCA-TGA-AA-CT-TAGGA--AAAAT-TTC-CA-TGCCAAT--------------------TTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGTGGAGGGG---ATG-AATAATGG-ATAAAGAGTC-CGAAT----------GAGG-TTTA--TAAATGAGCGCTTTT-TGC-TAG-TG-TC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTAT----TT-TGAC-A-TGTTTTG-AAAATTTTACATAAAA-CCCGT--TC-CTTATAGAGAGA----T--TGAAAGA---GTTGG--TTG-GTCAACAATGAGACC-AGTG-----C-AC-GGG-TGTTT-GTT-----GGAA-GGAC--------CGCTCAATATA-GAAC-AATAGGGAA----G--A--G--GTCG-TCAAA-GTGAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCTA--TTATTCG--CAAAAGACA--GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : AA---CGCAAA-T-T-TAATGTTTG-A---GAA-TAA-CAAAAA----TCTTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---AT--AACTGA--GA---C-CC-TTT-TA-TTTACA--TCCTAA-AT-GACAT--C-----TTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaattataccacata-TTTT--T-CTT--A-GGA-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGCTTTG-GTTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTTT--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AAG-T-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-TG--AC--AG-T-----GTGTC----------T----------CT---T----AT-G----------TAT-TG----------A-------
gi|5 : TCCC-TAATACAG-TAT--AGGTGC-------TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagct-GAGTT-TTAAA---------TGAGCCGCTT----G--------TTCT-CGC-TA--TGGTCCGTA-GT---GGTTTTGACCAT-GCAG-CAAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCATATTTTT-GATC-ATTGTT-TG-A------TAGAT--G-------------TTACACAAAAGTG--TAATGA---A---AATCC--TTGTTCCTGTATATAGA--AAGTATCGAAC-GC-GGG-TTTTT-GTTCCGTGA----AGACTCCTCA--C------TATA-G-AC-AAAAGGG-G----GCAA--GGTGTCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtGCAGGC-ATGT-TTATGAAGATATCTT-AAGATT---AAG-ATATAT--CTTAG-CAGGGTC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TAT-C-T-TAA-GA-TTTT--T-CTT--A-GGA-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGAC-GCGT-CTTTGGTTTG-G-----------------ATA-TCAGCC-TGTTT-CACTTC--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACAT-------TTCT-TG--ACT-AG-TTGTTTGTCTT----------T----------TG---T----ATTGAAC-------TATATG----------A-------TAT-----------ATG-ATTCCCTAATACAG-TAT--AGGTGC-----TATA--GATG-AGAAACACATCAGAATAAAAAA--A-TC-TAC--T-A-TGA-AC-AT-TAGGA--ATAAT-TTT-CA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-CT-GA-AGTTT-TTGAAATG-AAC-AGATTA-------GAGGGGGGGGGGGCAATG-AATAATGGGATAA-GA
gi|7 : -ATATAT--CTT-G-CAGGGTC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TAT-C-T-TAA--A-TTTT--T-CTT--ACGGA-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGAC-GCGC--------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACAT-------TTCT-CG--AT--AG-T-----GTGTGTCTTATGTAAT----------TGAACT----AT-A----------TATATT----------A-------TGA-----------AG--ATTCCCTAATACAG-TAT--AGGT-C-----TATA--GATGCGAACACACATCAGAATAAAACA--ATTT-CTCA-G-A-TGA-AC-AT-TAGCGAAAAAAT-TTT-CA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATCT-GACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttatgaacGCAGGC-ATGC-TTATGAAGGTATCTT-AAGATT---AAG-ATATAT--CTTAG-CAGGATC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTAT-C-T-TAA-GA-TTTT--T-CTT--A-GGT-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GC-----------------TA-TCAGCC-TG-TTTCACTTC--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-ACG-T-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC---------TACT-CA--AC--AG-T-----GT-------------G----------TG---T----GT-GTCT-------TATGTA----------C-------TGA-----------GTGTATTAC-TAGTGCGT-TAC--AGATACATACACATATATATG-G
gi|8 : aTTCC-TAATACAG-TA----GGTAC-----TATA--GATA-GAACCCACActacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcaagatCAGGG-CTGCCTTAATAAGATATTTTCAAGATTTAAG-G-ATATAT--CTTAGTCAGGATC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTCT-CGT-TAAAGAGTTTT--T-CTT--A-GGA-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGAC-GCGT-CTT--GTTTG-GTTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTTTTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAAG-A-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACAT-------TTCT-CG--ACGTAT-T-----GTC------------T----------CT---T----AT-G----------TAT-TG----------A-------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111
lowQualScore : 222222222 1111111111 11111 1 11 11111 11111 111 1111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222 11111 11111 3333333 00000000000000 333333 4444444444444444444 1111 222 4444444444444444444444 1 444444444444444444 1111111111 22222222 111 1 22 222 111 11 1 666666666666666666666666666666666666666666666666666666666666666 222222 222 1 111 11 111 11 111 1111 11111 1 1 111 111 22
lowQualScore : 5 5 5 000000000 55 3 3 666 88 3 55 3 88 666 5555555555 3 777777 0 3 3 3 44 5 9 3 3 3 44 3 55 3 55 3 3 3 7 7 3 4 4 3 55 3 3 3 3 3 3 333 88 22222 3 3 3 4 77 3 22222 55 3 3 55 22222 3 3 2 3 3 3 3 22 111 4 4 55 3333333 4 55 4 4 4 9999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 66 4 7777777 1 4 2 77777 5 0 999 5 5 5 5 5 66 6 6 1 22222 2 6 99 8 8 8 8 0 8 8 2222222 88 6 1 6 6 00000000000000 6 444444 6 6 6 3 6 6 3 6 6 6 6 6 4444444444444444444 6 2 6 6 4444 77 6 99 1 99 6 444 99 0000000000000000000000 77 1 77 3 6 888 5 5 5 66 0 5 333333333333333333 66 888 5 5 5 5 9999999999 66 5 5 6 1 66666666 0 0 88 88 111 0 33 333 777 33 3 333333333333333333333333333333333333333333333333333333333333333 888888 8 222 7 6 3 6 6 6 111 6 5 66 5 11 333 11 5 333 66 5 0000 00000 1 1 1 77 6 6 99 444 111 8 8 11 6 6
lowQualScore : . . . ......... .. . . ... .. . .. . .. ... .......... . ...... . . . . .. . . . . . .. . .. . .. . . . . . . . . . .. . . . . . . ... .. ..... . . . . .. . ..... .. . . .. ..... . . . . . . . .. ... . . .. ....... . .. . . . .... ................................................................................... . . .. . ....... . . . ..... . . ... . . . . . .. . . . ..... . . .. . . . . . . . ....... .. . . . . .............. . ...... . . . . . . . . . . . . ................... . . . . .... .. . .. . .. . ... .. ...................... .. . .. . . ... . . . .. . . .................. .. ... . . . . .......... .. . . . . ........ . . .. .. ... . .. ... ... .. . ............................................................... ...... . ... . . . . . . ... . . .. . .. ... .. . ... .. . .... ..... . . . .. . . .. ... ... . . .. . .
lowQualScore : 0 0 0 999999999 55 6 6 444 66 6 00 6 66 444 9999999999 6 666666 5 3 3 3 66 1 6 6 6 6 22 3 00 6 00 6 6 6 3 3 6 4 6 6 00 6 6 6 6 6 6 999 66 77777 6 6 3 4 33 6 77777 00 6 6 00 77777 6 6 1 6 6 6 6 11 111 0 0 55 0000000 0 55 0 0 0 4444 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 11 7 2222222 9 4 2 22222 0 4 444 0 0 0 0 0 99 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 5555555 88 7 0 7 7 00000000000000 7 555555 7 7 7 2 7 7 2 7 7 7 7 7 8888888888888888888 7 5 7 7 2222 77 7 22 0 22 7 555 22 1111111111111111111111 99 4 11 2 5 888 0 0 0 99 1 0 111111111111111111 99 888 0 0 0 0 4444444444 99 7 7 7 0 00000000 8 8 88 88 888 0 88 000 000 88 3 000000000000000000000000000000000000000000000000000000000000000 888888 8 000 3 7 3 7 7 7 777 7 7 99 0 99 111 22 0 888 99 7 0000 33333 4 4 0 99 7 7 22 888 888 0 0 22 7 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-CG--AC-AG-T-G-T--GTG--TC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------AT-TCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-CT-GA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTC-CGAATGAG---T-------TGAGC-GCTTT-TT-CT-CGC-TAGT-GGTC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC--CTTATAGAGAGATT--T--TGA---A--G---TTGGT--TG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----AC-----TC-N---CT--A---TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-CG--AC-AG-T-G-T--GT---TC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------AT-TCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-CT-GA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTC-CGAAT--------------TGAGC-GCTTTGTT-CT-CGC-TAGT-GGTC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG-TTTC--CTTATAGAGAGATT--T--TGA---A--G---TTGGT--TG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----AC-----TC-C---CT--A---TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTANCACATAA---CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGG-TGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TA-TC-T-TAA-GA-TTTT--TTCTT--A-GG-AAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGGC-GCCTTCTTTGGTTTG-GTTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTTCTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GAA-TGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACATGTAACACTTTT-CG--AC-TG-T-G-T--GT---TTT-----GTCTTAAT-G-------------TAT-TG----------AAGCCATATA---A-------CTGTACAAGACAAT-TCCCTAATAC-AGTTTCAGGGTGC-----TAT-TAGATG-GAACACACATCAGAATAAAAA-----TC-TACA-G-AATG-A-ACCAT-TA--GGAAAATT-TCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-CT-GA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGAT-AAGAGTC-CGAATGAGAGTTTAATAAATGAGC-GCTT-----CT-TGC-TAGG-GG-C-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATT--------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC--CTTATAGAGAGATT--T--TGA---AAGG---TTGGT--TGCGTCA-AC-AATAGACCAAGT---GC-ACG-GGGTGTTTGGTT--GTGAAGG----AC-----TCGCCA-CT--A---TAGG-AC-AATAGGG-A----G--AGGG--GTCG-TCAAA-GT-GTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAAAAA-AAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GAT---AATTAACCTGAGGGA-C---CCTTTT-TATTTACATTTCCT-AGATGG-CATTCTTTAAG--ATAGTCCTAAGATGTTGGTTC-TAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTTT--T-CTTTAA-GGAA-T-ATAT-CTTA-AC--TTAAGACCTCA---GAAC--TTGT-CC-TATGGAC-GCGT-CT---GTTTGTGTTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTTC--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AAG-T-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGAA-------ATCT-CGCCGC-AGCT-G-T--GTG--TC------TT----AT-G-------------TACA------------A-------TA---A-------g
gi|10 : ACGCACATTAGAATAAAAACCTCATC-TACA-G-A-TG-ACAC-ATGTA--GGAAAAActgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAATG-AATAATGGGAT-AAGAGTC-CGAATGGGTTATGA-----TGAGC-GCTTTTTTTCT-CGTATAGTTGGTC-GTT-GTT--GATTT-GACCAT-G-AGCCAAGGAG-TTGGAC-ATTT-GTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA-C--TTGTTTTG-AAA--TTTCCA---AA-TCC----TC--CTTAT-GAGAAGAT--T--TGA---A--GACGTTGATCTTG-GTGA-ACAA-TAGACCAAGT---GC-AAC-GGGTGTTT-GTT--GTGAA-G----ACGTCGTTC-A---CT--A---TA-G-ACGAATAGGA-G----A--A--G--GTAT-TCAAA--T-GAAAATAACGAAAG-----G--AAAAa
gi|12 : aTGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGAC-GCGT-CTTTGG--TG----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTTC--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AAG-T-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-T---AAACAAAAATC-TTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--A--TCG-CTT---GC-T---CC-TTTGAATTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccTC-TTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---A--TAA-CTGA--GA-T---TC-TTTTATTTTACA--TCCTAAGAT-G-CAT--CTTAGG--ATAGTCCTAAGATGT--GTCT-TAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : GCAGGC-GTGC-TTATGAAACTATCTT-AAAATATACCCT--AAGATCTAT--CTTAC-GAGGATTC---TTAG--G-AC-TAT--C-T--TA---AG----------GTT-GC-T---CCA-TCCTT--G-ATG-C--T
gi|15 : caCTTAAGATA---GTCC-TAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCTtttatggttaaatccatgtgatttttgtttaaaat
gi|16 : cagcCA------TATTAACAAATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAAT---AA-CAAAAATC-TTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---A--TCG-CT-----A-C---CCTTTT-AATTTA-A--TCCTAAGAT-G-CAT--gttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACATAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---A--TA
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGAT------A--AGAATATAT--CTTTA-CCAGG-TC---T-ACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C--TA--CCTA-TC---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGAT------T--A-GATATATTTCTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TA-TC-T-TAG-AA-GTTT--T-TTT--A-GG-A-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-AC-GCGT-CTTTG------GTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AAG-T-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACAT-------TTCT-CG--AC-AG-T-G-T--GTG--TC------GT----AT-GTTATTTGAAC---TATATG----------A-------TATATA-------AG----------AT-T-CCTAATAC-AGCAT--AGGTTC-------TATAGATG-GAACAC-CATCAGAAT--AAAA--AATCTTACA-G-A-TA-A-AC-AT-TA--GGAAAAATGTTTCA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATG-ACTAATAGGAT-AAGAGTTATGAAT--------------T-AGC-GCT--GTT-CTTCGC-TAGT-GGTC-GTA-TTTTGGATTTTGACCATCA-AGC-AAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT--AA-CCCG--TTC--CT--TAGAGA-----------------------TGGT--TGCGTC--AC-AATAGACAAGGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----AC-----TCGCTCACT--A---TA-G-AC-AATAGGG-AACACA--G--G--GTCG-TCAAACGTGGAATACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAGAGAGAG-----A--AAAAT-ATTC-AAATA--TCT--ATTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--ttgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACA--AAG-GTGA--GAGCGCGCT-TTT-ATTTTACA--TCCTATAAT-G-GAT--CTTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctc---CT--A---TA-G-AC-AATAGGG-A----G--AG-G--GTTG-TCAAA-AT-GAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT--A
gi|21 : aAAATTGAGCAAGT---GCGACG-GGGTGTTT-GTT--GTGAA-G----AC-----TC-G---CTCGATACTA-G-GA-AAT-GGG-A----T--A--G--G
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTgtat
gi|23 : GA---G--A---TTGGT--TG-GTCA-ACAA-TAAACCAAGT---GC-ATG-GGGTGTTT-GTT--GTGAA-G----gct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCT
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----------AGATATAT--CTTGG-C-GTA-TC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG----TGTTCCTA-TC-T-TAA-GA-TTTT----CTT--A-GG-A-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGAC-GCGT-CTTTGGTTTG-TTTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACAT-------T-CT-AG--AC-AG-T-G----G------------GT----AT-A-------------TACATG----------A-------TA---A-------A-----------AT-TCC-TAACACGACTAT--AGGTCC-----TATATAGATG-GAACACA-ATTAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TG--G--AAAAT-TTTCACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-CT-GA-GGTTTATTGACA-G-GAC-AGATTA-------GAGGGGAGGGGGCAAATG-AATAATGGGAT-AAGAGTC-CGAAT--------------TGAG--GTTAT-TT-CT-CGC-TAGT-GGGC-GTTCGTTTGGATTTTGACAAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT--AACCCCG-TTTTCACTTACAG-GAGATTGAT--TG----A--G---TTGGT--TG-GTCA-ACAAATAGACCAAGT---GC-ACG-GG-------------------------------------TT--A---TA-G-AC-AATA-GG-A----G--A--G--GTCGTTCCAA-GT-GGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T-ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTG--ACATAA---CGCAAAATAT-TAATGTTTGAAT-TGAA-T---AA-CAAAAAAT-TTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-ATTTTACA--TCCTAAGAT-G-CAT--TTTAAG--CTAGTCCTAAGATGT--GTCC-TAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : ATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTA-TC-T-TAA--A-TTTTATT-CTT--A-GG-A-TTATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-CT--A-GGACCGCGT-CTGTG-TTTG-GTTTT-GGTT-----TGGATA-TCAGCC-TGTTT-CACTTCC-ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-CG-CT-G-TTTTTGG---ATG-AGCA--TAACAT-------TTTTTCG--AC-AG-T-GGT--GTG--TCAACTGTGT----GT-G-------------TCTATGTATTGAACATA-------TA---ATGTATATAT----------AT-TCCCTAATAC-AGTAT--AGGTGC-----TATA---ATG-GAACACACATCGGAATAAAAAA--A-TA-TACATGCA-TG-A-AA-CT-TA--GGAAAAAT-TTCCA-TGCCAAT--------------------TTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGTGGAGGGG---ATG-AATAAT-GGATAAAGAGTC-CGAATGAGGTTTATAAA--TGAGC-GCTTT-----T-TGC-TAGT--GTC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAA-CCCG--TTC--CTTATAGAGAGA----T--TGAAAGA--G---TTGGT--TG-GTCA-ACAATGAGACC-AGT---GC-AC--GGGTGTTT-GTT--G-GAA-GGACCGC-----TC-A---AT--A---TA-GAAC-AATAGGGAA----G--A--G--GTCG-TCAAA-GT-GAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCT--ATTATTCG--CAAAAGAC-A-GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : TACCACATAAA--CGCAAA-T-T-TAATGTTTG-A---GAA-T---AA-CAAAAATC-TTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-TATTTACA--TCCTAA-AT-GACAT--CTTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaatta-TTTT--T-CTT--A-GG-A-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGCTTTG-GTTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTTT--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AAG-T-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-TG--AC-AG-T-G-T--GTC--TC------TT----AT-G-------------TAT-TG----------A-------
gi|5 : T-TCCCTAATAC-AGTAT--AGGTGC-------TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcGAGTT-TTAAA--------------TGAGCCGCTT-GTT-CT-CGC-TA-T-GGTCCGTA-GT---GGTTTTGACCAT-GCAGC-AAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTGTTT-G-A------TAGAT--G--------------TTACACAAAAGTG--TAATGA---A--A---ATCCT--TG-TTCCTGTATATAGA--AAGTATCGA-ACGCGGGTTTTT-GTTCCGTGAA-G----AC-----TC-CTCACT--A---TA-G-AC-AAAAGGG-G----GCAA--GGTGTCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtGCAGGC-ATGT-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGAC-GCGT-CTTTGGTTTG-G-----------------ATA-TCAGCC-TGTTT-CACTTC--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACAT-------TTCT-TG--ACTAG-TTG-TTTGTCTTTT------GT----ATTGAAC----------TATATG----------A-------TA---T-------ATG---------AT-TCCCTAATAC-AGTAT--AGGTGC-----TATA--GATG-AGAAACACATCAGAATAAAAAA--A-TC-TAC--T-A-TG-A-AC-AT-TA--GGAATAAT-TTTCA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-CT-GA-AGTTT-TTGAAATG-AAC-AGATTA-------GAGGGGGGGGGGGCAATG-AATAATGGGAT-AAGA
gi|7 : AT------G--AACATATAT--CTT-G-CAGGG-TC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TA-TC-T-TAA--A-TTTT--T-CTT--ACGG-A-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGAC-GCGC--------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACAT-------TTCT-CG--AT-AG-T-G-T--GTG--TC------TT----AT-GTAATTGAACTATATATATT----------A-------TG---A-------AG----------AT-TCCCTAATAC-AGTAT--AGGT-C-------TATAGATGCGAACACACATCAGAATAAAACA--ATTT-CTCA-G-A-TG-A-AC-AT-TAGCGAAAAAAT-TTTCA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATCT-GACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttGCAGGC-ATGC-TTATGAAGGTATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGA-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-T-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GC-----------------TA-TCAGCC-TG-TTTCACTTC--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-ACG-T-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC---------TACT-CA--AC-AG-T-G-T--GT-----------GT----GT-GTCT----------TATGTA----------C-------TG---A-------GT----------GTATTACTAGTGC-GTTAC--AGATACATACACATATATATG-G--C-TACA----AATGAAGGG--GAGC-T-CA---A-TGAA-AC-AT------GAAAAA
gi|8 : a---A-------AG----------AT-TTCCTAATAC-AG--T--AGGTAC-------TATAGATA-GAACCCACAagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcCAGGG-CTGCCTTAATAAGATATTTTCAAGAT------TTAAGGATATAT--CTTAGTCAGGA-TC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTC-TCGT-TAAAGAGTTTT--T-CTT--A-GG-A-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGAC-GCGT-CTT--GTTTG-GTTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTTTTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAAG-A-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACAT-------TTCT-CG--AC--G-T-ATT--GTC--TC------TT----AT-G-------------TAT-TG----------A--------A---C-------AT----------AT-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Alignments
lowQualScore : 222222222 1111111111 11111 1 11 11111 11111 111 1111111 111111 999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222 11111 11111 33333333 777777777777777 1111 4444444444444444444 1111 111111111 4444444444444444444 1 333333333333333333333333 1111111111 22222222 111 1 22 222 111 11 1 666666666666666666666666666666666666666666666666666666666666666 222222 222 1 111 11 111 11 111 1111 11111 1 1 111 111 22
lowQualScore : 5 5 5 000000000 55 3 3 666 88 3 55 3 88 666 5555555555 3 777777 0 3 3 3 44 5 9 3 3 3 44 3 55 3 55 3 3 7 3 7 3 4 4 3 55 3 3 3 3 3 1 77777777 22222 3 3 7 3 33 3 22222 55 3 3 55 22222 3 3 55 3 3 3 5 111 4 4 55 4 3333333 55 111111 4 8 4 111111111111111111111111111111111111111111111111111111111111111111111111111111 2 4 66 4 7777777 1 4 2 5 11111 5 0 999 5 5 5 5 5 66 6 6 1 22222 2 6 99 8 8 8 8 0 8 8 66666666 88 1 6 444444444444444 6 1111 1 6 6 6 6 3 6 6 6 6 6 4444444444444444444 6 2 6 6 4444 77 6 99 1 99 6 444444444 1111111111111111111 77 1 77 9 0 888 5 5 5 66 0 5 666666666666666666666666 66 888 5 5 5 5 9999999999 66 5 5 6 1 66666666 0 0 88 88 111 0 33 333 777 33 3 333333333333333333333333333333333333333333333333333333333333333 888888 5 0 111 7 6 3 6 6 6 111 6 5 66 5 11 333 11 5 333 66 5 0000 00000 1 1 1 77 6 6 99 444 111 8 8 11 6 6
lowQualScore : . . . ......... .. . . ... .. . .. . .. ... .......... . ...... . . . . .. . . . . . .. . .. . .. . . . . . . . . . .. . . . . . . ........ ..... . . . . .. . ..... .. . . .. ..... . . .. . . . . ... . . .. . ....... .. ...... . . . .............................................................................. . . .. . ....... . . . . ..... . . ... . . . . . .. . . . ..... . . .. . . . . . . . ........ .. . . ............... . .... . . . . . . . . . . . ................... . . . . .... .. . .. . .. . ......... ................... .. . .. . . ... . . . .. . . ........................ .. ... . . . . .......... .. . . . . ........ . . .. .. ... . .. ... ... .. . ............................................................... ...... . . ... . . . . . . ... . . .. . .. ... .. . ... .. . .... ..... . . . .. . . .. ... ... . . .. . .
lowQualScore : 0 0 0 999999999 55 6 6 444 66 6 00 6 66 444 9999999999 6 666666 5 3 3 3 66 1 6 6 6 6 22 3 00 6 00 6 6 3 6 3 6 4 6 6 00 6 6 6 6 6 4 77777777 77777 6 6 7 6 66 6 77777 00 6 6 00 77777 6 6 77 6 6 6 1 111 0 0 55 0 0000000 55 000000 0 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111 9 4 11 7 2222222 9 4 2 1 11111 0 4 444 0 0 0 0 0 99 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 22222222 88 0 7 333333333333333 7 7777 0 7 7 7 7 2 7 7 7 7 7 8888888888888888888 7 5 7 7 2222 77 7 22 0 22 7 222222222 9999999999999999999 99 4 11 4 4 888 0 0 0 99 1 0 999999999999999999999999 99 888 0 0 0 0 4444444444 99 7 7 7 0 00000000 8 8 88 88 888 0 88 000 000 88 3 000000000000000000000000000000000000000000000000000000000000000 888888 0 8 666 3 7 3 7 7 7 777 7 7 99 0 99 111 22 0 888 99 7 0000 33333 4 4 0 99 7 7 22 888 888 0 0 22 7 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA--------GGGGGGGGGGGGGNAATGAATAATGGGAT-AAGAGTCCGAAT--GA-GTT-------TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---CA---CT--A---TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA--------GGGGGGGGGGGGGNAATGAATAATGGGAT-AAGAGTCCGAAT--GA-GT--------TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---CN---CT--A---TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGG-TGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TA-TC-T-TAA-GA-TTT--TTTCTT--A-GG-AAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGG-CGCCTTCTTTGGTTTG-G-TTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTT-CTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GA-ATGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACA-TGTAACACTTTTCG--AC-T----G-T-G-TGTTTT------GTCTTAAT-G-------------TAT-TG----------AAGCCATATA---A-------CTGTACAAGACAATTCCCTAATAC-AGTTTCAGGGTGC-----TAT-TAGATG-GAACACACATCAGAATAAAAA-----TC-TACA-G-AATG-A-ACCAT-TA--GGAAAATT-TCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-C-TGA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGAT-AAGAGTCCGAATGAGA-GTTTAATAAATGAGC-GC-----TTCTTGC-TAG--GGGC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATT--------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC---CTTATAGAGAGATT--T--TGA---AAG-GTTGG--TTGCGTCA-AC-AATAGACCAAGT---GC-ACG-GGGTGTTTGGTT--GTGAAGG----A----C-----TCGCCA---CT--A---TAGG-AC-AATAGGG-A----G--AGGG--GTCG-TCAAA-GT-GTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAAAAA-AAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GAT---AATTAACCTGAGGGA-C---CCTTTT-TATTTACATTTCCT-AGATGG-CATTCTTTAAG--ATAGTCCTAAGATGTTGGTTC-TAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTT--TT-CTTTAA-GGAA-T-ATAT-CTTA-AC--TTAAGACCTCA---GAAC--TTGT-CC-TATGGA-CGCGT-CT---GTTTGTG-TTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTT-C--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AA-GT-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGA-A-------ATCTCGCCGC-A----GCT-G-TGTGTC------TT----AT-G-------------TACA------------A-------TA---A-------g
gi|10 : ACGCACATTAGAATAAAAACCTCATC-TACA-G-A-TG-ACAC-ATGTA--GGAAAAActgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAATGAATAATGGGAT-AAGAGTCCGAAT--GG-GTTATGA---TGAGC-GCTTTTTTTCTCGTATAGTTGGTC-GTT-GTT--GA-TTTGACCAT-G-AGCCAAGGAG-TTGGAC-A-TTTGTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA-C--TTGTTTTG-AAA--TTTCCA---AA-TCC----TC---CTTAT-GAGAAGAT--T--TGA---AGACGTTGATCTTG-GTGA-AC-AATAGACCAAGT---GC-AAC-GGGTGTTT-GTT--GTGAA-G----A----CGTCGTT---CA---CT--A---TA-G-ACGAATAGGA-G----A--A--G--GTAT-TCAAA--T-GAAAATAACGAAAG-----G--AAAAa
gi|12 : aTGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGA-CGCGT-CTTTGG--TG-----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTT-C--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AA-GT-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-T---AAACAAAAATC-TTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--A--TCG-CTT---GC-T---CC-TTTGAATTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccTC-TTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---A--TAA-CTGA--GA-T---TC-TTTTATTTTACA--TCCTAAGAT-G-CAT--CTTAGG--ATAGTCCTAAGATGT--GTCT-TAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : GCAGGC-GTGC-TTATGAAACTATCTT-AAAATATACCCT--AAGATCTAT--CTTAC-GAGGATTC---TTAG--G-AC-TAT--C-T--TA---AG----------GTT-GC-T---CCA-TCCTT--G-ATG-C--T
gi|15 : caCTTAAGATA---GTCC-TAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCTtttatggttaaatccatgtgatttttgtttaaaat
gi|16 : cagcCA------TATTAACAAATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAAT---AA-CAAAAATC-TTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---A--TCG-CT-----A-C---CCTTTT-AATTTA-A--TCCTAAGAT-G-CAT--gttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACATAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---A--TA
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGAT------A--AGAATATAT--CTTTA-CCAGG-TC---T-ACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C--TA--CCTA-TC---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGAT------T--A-GATATATTTCTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TA-TC-T-TAG-AA-GTT--TT-TTT--A-GG-A-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-A-CGCGT-CTTTG------G-TTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTT-CT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AA-GT-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-GTTATTTGAAC---TATATG----------A-------TATATA-------AG----------ATT-CCTAATAC-AGCAT--AGGTTC-------TATAGATG-GAACAC-CATCAGAAT--AAAA--AATCTTACA-G-A-TA-A-AC-AT-TA--GGAAAAATGTTTCA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATGACTAATAGGAT-AAGAGTT---AT--GA-AT--------T-AGC-GC--TGTTCTTCGC-TAG-TGGTC-GTA-TTTTGGATTTTGACCATCA-AG-CAAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT--AA-CCCG--TTC---CT--TAGAGA---------------------TGG--TTGCGTC--AC-AATAGACAAGGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----ACTCGC-----T---CA---CT--A---TA-G-AC-AATAGGG-AACACA--G--G--GTCG-TCAAACGTGGAATACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAGAGAGAG-----A--AAAAT-ATTC-AAATA--TCT--ATTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--ttgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACA--AAG-GTGA--GAGCGCGCT-TTT-ATTTTACA--TCCTATAAT-G-GAT--CTTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctc---CT--A---TA-G-AC-AATAGGG-A----G--AG-G--GTTG-TCAAA-AT-GAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT--A
gi|21 : aAAATTGAGCAAGT---GCGACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---CG---CTCGATACTA-G-GA-AAT-GGG-A----T--A--G--G
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTgtat
gi|23 : GA---G---ATTGG--TTG-GTCA-ACAA-TAAACCAAGT---GC-ATG-GGGTGTTT-GTT--GTGAA-G----gct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCT
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----------AGATATAT--CTTGG-C-GTA-TC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG----TGTTCCTA-TC-T-TAA-GA-TTT--T--CTT--A-GG-A-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGA-CGCGT-CTTTGGTTTG-T-TTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACA-T-------T-CTAG--AC-A----G-T-G----G--------GT----AT-A-------------TACATG----------A-------TA---A-------A-----------ATTCC-TAACACGACTAT--AGGTCC-----TATATAGATG-GAACACA-ATTAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TG--G--AAAAT-TTTCACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-C-TGA-GGTTTATTGACA-G-GAC-AGATTA--------GAGGGGAGGGGGCAAATGAATAATGGGAT-AAGAGTCCGAAT---------------TGAG--GT--TATTTCTCGC-TAG-TGGGC-GTTCGTTTGGATTTTGACAAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT--AACCCCG--TTTTCACTTACAG-GAGATTGAT--TG----A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GG-------------------------------------------TT--A---TA-G-AC-AATA-GG-A----G--A--G--GTCGTTCCAA-GT-GGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T-ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTG--ACAT-AA--CGCAAAATAT-TAATGTTTGAAT-TGAA-T---AA-CAAAAAAT-TTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-ATTTTACA--TCCTAAGAT-G-CAT--TTTAAG--CTAGTCCTAAGATGT--GTCC-TAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : ATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTA-TC-T-TAA--A-TTTTATT-CTT--A-GG-ATT-ATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-C--TA-GGACCGCGT-CTGT-GTTTG-GTTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCC--ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-C-GCT-G-TTTTTG---GATG-AGCA--TAACATT-------TTTTCG--AC-A----G-TGG-TGTGTCAACTGTGT----GT-G-------------TCTATGTATTGAACATA-------TA---ATGTATATAT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA---ATG-GAACACACATCGGAAT-AAAAA--AATA-TACATGCA-TG-A-AA-CT-TA--GGAAAAAT-TTCCA-TGCCAA--------------------TTTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA--------GGGGTGGAGGGG---ATGAATAAT-GGATAAAGAGTCCGAAT--GAGGTTTATAAA-TGAGC-GC--TTTTT---GC-TAG-T-GTC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAA-CCCG--TTC---CTTATAGAGAGA----T--TGAAAGA---GTTGG--TTG-GTCA-ACAATGAGACC-AGT---GC-AC--GGGTGTTT-GTT--G-GAA-GGACCG----C-----T---CA---AT--A---TA-GAAC-AATAGGGAA----G--A--G--GTCG-TCAAA-GT-GAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCT--ATTATTCG--CAAAAGAC-A-GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : TACCACATAAA--CGCAAA-T-T-TAATGTTTG-A---GAA-T---AA-CAAAAATC-TTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-TATTTACA--TCCTAA-AT-GACAT--CTTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaatta-TTT--TT-CTT--A-GG-A-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGCTTTG-G-TTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTT-T--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AA-GT-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTTG--AC-A----G-T-G-TGTCTC------TT----AT-G-------------TAT-TG----------A-------
gi|5 : TTCCCTAATAC-AGTAT--AGGTGC-------TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagc--------TGAGCCGC--TTGTTCTCGC-TA--TGGTCCGTA-GT---GGTTTTGACCAT-GCAG-CAAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTGTTT-G-A------TAGAT--G---------------TTACACAAAAGTG--TAATGA---A---AATCC--TTG-TTCCTGTATATAGA--AAGTATCGA-ACGCGGGTTTTT-GTTCCGTGAA-G----A----C-----T---CCTCACT--A---TA-G-AC-AAAAGGG-G----GCAA--GGTGTCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaaGCAGGC-ATGT-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGA-CGCGT-CTTTGGTTTG-G------------------ATA-TCAGCC-TGTTT-CACTT-C--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACA-T-------TTCTTG--ACTA----G-TTG-TTTGTCTTTT--GT----ATTGAAC----------TATATG----------A-------TA---T-------ATG---------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA--GATG-AGAAACACATCAGAATAAAAAA--A-TC-TAC--T-A-TG-A-AC-AT-TA--GGAATAAT-TTTCA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-C-TGA-AGTTT-TTGAAATG-AAC-AGATTA--------GAGGGGGGGGGGGCAATGAATAATGGGAT-AAGA
gi|7 : AT------G--AACATATAT--CTT-G-CAGGG-TC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TA-TC-T-TAA--A-TTT--TT-CTT--ACGG-A-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGA-CGCGC---------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACA-T-------TTCTCG--AT-A----G-T-G-TGTGTC------TT----AT-GTAATTGAACTATATATATT----------A-------TG---A-------AG----------ATTCCCTAATAC-AGTAT--AGGT-C-------TATAGATGCGAACACACATCAGAATAAAACA--ATTT-CTCA-G-A-TG-A-AC-AT-TAGCGAAAAAAT-TTTCA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATC-TGACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttGCAGGC-ATGC-TTATGAAGGTATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGA-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-T-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-C-----------------TA-TCAGCC-TG-TTTCACTT-C--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-AC-GT-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC----------TACTCA--AC-AGTGTG-T-G-TGTGTC------TT----AT-G-------------TAC-TG----------AG------T------------GT----------ATT-ACTAGTGC-GTTAC--AGATACATACACATATATATG-G--C-TACA----AATGAAGGG--GAGC-T-CA---A-TGAA-AC-AT------GAAAAA
gi|8 : a---A-------AG----------ATTTCCTAATAC-AG--T--AGGTAC-------TATAGATA-GAACCCACAagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcCAGGG-CTGCCTTAATAAGATATTTTCAAGAT------TTAAGGATATAT--CTTAGTCAGGA-TC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTC-TCGT-TAAAGAGTTT--TT-CTT--A-GG-A-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGA-CGCGT-CTT--GTTTG-G-TTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTT-TTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAA-GA-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACA-T-------TTCTCG--AC------G-T-ATTGTCTC------TT----AT-G-------------TAT-TG----------A--------A---C-------AT----------AT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Alignments
lowQualScore : 222222222 1111111111 11111 1 11 11111 11111 111 1111111 111111 999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222 11111 11111 3333333 7777777777777777777 111 4444444444444444444 1111 111111111 4444444444444444444444 1 33333333333333333333333 1111111111 22222222 111 1 22 222 111 11 1 666666666666666666666666666666666666666666666666666666666666666 222222 222 1 111 11 111 11 111 1111 11111 1 1 111 111 22
lowQualScore : 5 5 5 000000000 55 3 3 666 88 3 55 3 88 666 5555555555 3 777777 0 3 3 3 44 5 9 3 3 3 44 3 55 3 55 3 3 7 3 7 3 4 4 3 55 3 3 3 3 3 1 77777777 22222 3 3 7 3 33 3 22222 55 3 3 55 22222 3 3 55 3 3 3 5 111 4 4 55 4 3333333 55 111111 4 8 4 111111111111111111111111111111111111111111111111111111111111111111111111111111 2 4 66 4 7777777 1 4 2 5 11111 5 0 999 5 5 5 5 5 66 6 6 1 22222 2 6 99 8 8 8 8 0 8 8 2222222 88 6 1 6 3333333333333333333 6 3 000 6 6 3 6 6 3 6 6 6 6 6 4444444444444444444 6 2 6 6 4444 77 6 99 1 99 6 444444444 0000000000000000000000 77 1 77 3 6 888 5 5 5 66 0 5 33333333333333333333333 66 888 5 5 5 5 9999999999 66 5 5 6 1 66666666 0 0 88 88 111 0 33 333 777 33 3 333333333333333333333333333333333333333333333333333333333333333 888888 5 0 111 7 6 3 6 6 6 111 6 5 66 5 11 333 11 5 333 66 5 0000 00000 1 1 1 77 6 6 99 444 111 8 8 11 6 6
lowQualScore : . . . ......... .. . . ... .. . .. . .. ... .......... . ...... . . . . .. . . . . . .. . .. . .. . . . . . . . . . .. . . . . . . ........ ..... . . . . .. . ..... .. . . .. ..... . . .. . . . . ... . . .. . ....... .. ...... . . . .............................................................................. . . .. . ....... . . . . ..... . . ... . . . . . .. . . . ..... . . .. . . . . . . . ....... .. . . . ................... . . ... . . . . . . . . . . . ................... . . . . .... .. . .. . .. . ......... ...................... .. . .. . . ... . . . .. . . ....................... .. ... . . . . .......... .. . . . . ........ . . .. .. ... . .. ... ... .. . ............................................................... ...... . . ... . . . . . . ... . . .. . .. ... .. . ... .. . .... ..... . . . .. . . .. ... ... . . .. . .
lowQualScore : 0 0 0 999999999 55 6 6 444 66 6 00 6 66 444 9999999999 6 666666 5 3 3 3 66 1 6 6 6 6 22 3 00 6 00 6 6 3 6 3 6 4 6 6 00 6 6 6 6 6 4 77777777 77777 6 6 7 6 66 6 77777 00 6 6 00 77777 6 6 77 6 6 6 1 111 0 0 55 0 0000000 55 000000 0 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111 9 4 11 7 2222222 9 4 2 1 11111 0 4 444 0 0 0 0 0 99 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 5555555 88 7 0 7 5555555555555555555 7 2 222 7 7 2 7 7 2 7 7 7 7 7 8888888888888888888 7 5 7 7 2222 77 7 22 0 22 7 222222222 1111111111111111111111 99 4 11 2 5 888 0 0 0 99 1 0 99999999999999999999999 99 888 0 0 0 0 4444444444 99 7 7 7 0 00000000 8 8 88 88 888 0 88 000 000 88 3 000000000000000000000000000000000000000000000000000000000000000 888888 0 8 666 3 7 3 7 7 7 777 7 7 99 0 99 111 22 0 888 99 7 0000 33333 4 4 0 99 7 7 22 888 888 0 0 22 7 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT---A--T-----GAGC-GCTTTTT--CTCGC-TAGT-GGTC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A--G---TTGGT--TG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA---C-CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT------T-----GAGC-GCTTTTT--CTCGC-TAGT-GGTC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A--G---TTGGT--TG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA---C-CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGG-TGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TA-TC-T-TAA-GA-TTT--TTTCTT--A-GG-AAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGG-CGCCTTCTTTGGTTTG-G-TTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTT-CTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GA-ATGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACA-TGTAACACTTTTCG--AC-T----G-T-G-TGTTTT------GTCTTAAT-G-------------TAT-TG----------AAGCCATATA---A-------CTGTACAAGACAATTCCCTAATAC-AGTTTCAGGGTGC-----TAT-TAGATG-GAACACACATCAGAATAAAAA-----TC-TACA-G-AATG-A-ACCAT-TA--GGAAAATT-TCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-C-TGA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGAT-AAGAGTCCGAATGA-GAGTTTAATAAAT-----GAGC-GCTT-----CTTGC-TAGG-GG-C-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATT--------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC---CTTATAGAGAGATT--T--TGA---AAGG---TTGGT--TGCGTCA-AC-AATAGACCAAGT---GC-ACG-GGGTGTTTGGTT--GTGAAGG----A----C-----TCGCC---ACT--A---TAGG-AC-AATAGGG-A----G--AGGG--GTCG-TCAAA-GT-GTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAAAAA-AAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GAT---AATTAACCTGAGGGA---C-CCTTTT-TATTTACATTTCCT-AGATGG-CATTCTTTAAG--ATAGTCCTAAGATGTTGGTTC-TAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTT--TT-CTTTAA-GGAA-T-ATAT-CTTA-AC--TTAAGACCTCA---GAAC--TTGT-CC-TATGGA-CGCGT-CT---GTTTGTG-TTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTT-C--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AA-GT-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGA-A-------ATCTCGCCGC-A----GCT-G-TGTGTC------TT----AT-G-------------TACA------------A-------TA---A-------g
gi|10 : ACGCACATTAGAATAAAAACCTCATC-TACA-G-A-TG-ACAC-ATGTA--GGAAAAActgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAATG-AATAATGGGAT-AAGAGTCCGAATGG-G---TTATGA--T-----GAGC-GCTTTTTTTCTCGTATAGTTGGTC-GTT-GTT--GATTT-GACCAT-G-AGCCAAGGAG-TTGGAC-ATTT-GTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA-C--TTGTTTTG-AAA--TTTCCA---AA-TCC----TC---CTTAT-GAGAAGAT--T--TGA---A--GACGTTGATCTTG-GTGA-ACAA-TAGACCAAGT---GC-AAC-GGGTGTTT-GTT--GTGAA-G----A----CGTCGTT---C---ACT--A---TA-G-ACGAATAGGA-G----A--A--G--GTAT-TCAAA--T-GAAAATAACGAAAG-----G--AAAAa
gi|12 : aTGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGA-CGCGT-CTTTGG--TG-----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTT-C--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AA-GT-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-T---AAACAAAAATC-TTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--A--TCG-CTT---GC---T-CC-TTTGAATTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccTC-TTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---A--TAA-CTGA--GA---T-TC-TTTTATTTTACA--TCCTAAGAT-G-CAT--CTTAGG--ATAGTCCTAAGATGT--GTCT-TAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : GCAGGC-GTGC-TTATGAAACTATCTT-AAAATATACCCT--AAGATCTAT--CTTAC-GAGGATTC---TTAG--G-AC-TAT--C-T--TA---AG----------GTT-GC-T---CCA-TCCTT--G-ATG-C--T
gi|15 : caCTTAAGATA---GTCC-TAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCTtttatggttaaatccatgtgatttttgtttaaaat
gi|16 : cagcCA------TATTAACAAATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAAT---AA-CAAAAATC-TTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---A--TCG-CT-----A---C-CCTTTT-AATTTA-A--TCCTAAGAT-G-CAT--gttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACATAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---A--TA
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGAT------A--AGAATATAT--CTTTA-CCAGG-TC---T-ACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C--TA--CCTA-TC---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGAT------T--A-GATATATTTCTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TA-TC-T-TAG-AA-GTT--TT-TTT--A-GG-A-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-A-CGCGT-CTTTG------G-TTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTT-CT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AA-GT-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-GTTATTTGAAC---TATATG----------A-------TATATA-------AG----------ATT-CCTAATAC-AGCAT--AGGTTC-------TATAGATG-GAACAC-CATCAGAAT--AAAA--AATCTTACA-G-A-TA-A-AC-AT-TA--GGAAAAATGTTTCA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATG-ACTAATAGGAT-AAGAGTT---ATGA-A---TT-------------AGC-GCTGTTC--TTCGC-TAGT-GGTC-GTA-TTTTGGATTTTGACCATCA-AGC-AAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT--AA-CCCG--TTC---CT--TAGAGA-----------------------TGGT--TGCGTC--AC-AATAGACAAGGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----ACTCGC-----T---C---ACT--A---TA-G-AC-AATAGGG-AACACA--G--G--GTCG-TCAAACGTGGAATACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAGAGAGAG-----A--AAAAT-ATTC-AAATA--TCT--ATTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--ttgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACA--AAG-GTGA--GAGCGCGCT-TTT-ATTTTACA--TCCTATAAT-G-GAT--CTTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctc---ACT--A---TA-G-AC-AATAGGG-A----G--AG-G--GTTG-TCAAA-AT-GAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT--A
gi|21 : AAATTGAGCAAGT---GCGACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---GCTCGATACTA-G-GA-AAT-GGG-A----T--A--G--G
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTgtat
gi|23 : GA---G--A---TTGGT--TG-GTCA-ACAA-TAAACCAAGT---GC-ATG-GGGTGTTT-GTT--GTGAA-G----gct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCT
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----------AGATATAT--CTTGG-C-GTA-TC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG----TGTTCCTA-TC-T-TAA-GA-TTT--T--CTT--A-GG-A-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGA-CGCGT-CTTTGGTTTG-T-TTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACA-T-------T-CTAG--AC-A----G-T-G----G--------GT----AT-A-------------TACATG----------A-------TA---A-------A-----------ATTCC-TAACACGACTAT--AGGTCC-----TATATAGATG-GAACACA-ATTAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TG--G--AAAAT-TTTCACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-C-TGA-GGTTTATTGACA-G-GAC-AGATTA-------GAGGGGAGGGGGCAAATG-AATAATGGGAT-AAGAGTCCGAAT---------------T-----GAG--GTTATTT--CTCGC-TAGT-GGGC-GTTCGTTTGGATTTTGACAAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT--AACCCCG--TTTTCACTTACAG-GAGATTGAT--TG----A--G---TTGGT--TG-GTCA-ACAAATAGACCAAGT---GC-ACG-GG-------------------------------------------TT--A---TA-G-AC-AATA-GG-A----G--A--G--GTCGTTCCAA-GT-GGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T-ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTG--ACAT-AA--CGCAAAATAT-TAATGTTTGAAT-TGAA-T---AA-CAAAAAAT-TTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA---C-CC-TTT-ATTTTACA--TCCTAAGAT-G-CAT--TTTAAG--CTAGTCCTAAGATGT--GTCC-TAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : ATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTA-TC-T-TAA--A-TTTTATT-CTT--A-GG-ATT-ATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-C--TA-GGACCGCGT-CTGT-GTTTG-GTTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCC--ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-C-GCT-G-TTTTTG---GATG-AGCA--TAACATT-------TTTTCG--AC-A----G-TGG-TGTGTCAACTGTGT----GT-G-------------TCTATGTATTGAACATA-------TA---ATGTATATAT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA---ATG-GAACACACATCGGAAT-AAAAA--AATA-TACATGCA-TG-A-AA-CT-TA--GGAAAAAT-TTCCA-TGCCAA--------------------TTTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGTGGAGGGG---ATG-AATAAT-GGATAAAGAGTCCGAATGAGG---TTTATAAAT-----GAGC-GCTTTTT-----GC-TAGT--GTC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAA-CCCG--TTC---CTTATAGAGAGA----T--TGAAAGA--G---TTGGT--TG-GTCA-ACAATGAGACC-AGT---GC-AC--GGGTGTTT-GTT--G-GAA-GGACCG----C-----T---C---AAT--A---TA-GAAC-AATAGGGAA----G--A--G--GTCG-TCAAA-GT-GAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCT--ATTATTCG--CAAAAGAC-A-GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : TACCACATAAA--CGCAAA-T-T-TAATGTTTG-A---GAA-T---AA-CAAAAATC-TTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA---C-CC-TTT-TATTTACA--TCCTAA-AT-GACAT--CTTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaatta-TTT--TT-CTT--A-GG-A-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGCTTTG-G-TTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTT-T--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AA-GT-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTTG--AC-A----G-T-G-TGTCTC------TT----AT-G-------------TAT-TG----------A-------
gi|5 : TTCCCTAATAC-AGTAT--AGGTGC-------TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcAGTGA-G---TT------TTAAATGAGCCGCTTGTT--CTCGC-TA-T-GGTCCGTA-GT---GGTTTTGACCAT-GCAGC-AAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTGTTT-G-A------TAGAT--G---------------TTACACAAAAGTG--TAATGA---A--A---ATCCT--TG-TTCCTGTATATAGA--AAGTATCGA-ACGCGGGTTTTT-GTTCCGTGAA-G----A----C-----T---CCTCACT--A---TA-G-AC-AAAAGGG-G----GCAA--GGTGTCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaGCAGGC-ATGT-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGA-CGCGT-CTTTGGTTTG-G------------------ATA-TCAGCC-TGTTT-CACTT-C--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACA-T-------TTCTTG--ACTA----G-TTG-TTTGTCTTTT--GT----ATTGAAC----------TATATG----------A-------TA---T-------ATG---------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA--GATG-AGAAACACATCAGAATAAAAAA--A-TC-TAC--T-A-TG-A-AC-AT-TA--GGAATAAT-TTTCA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-C-TGA-AGTTT-TTGAAATG-AAC-AGATTA-------GAGGGGGGGGGGGCAATG-AATAATGGGAT-AAGA
gi|7 : AT------G--AACATATAT--CTT-G-CAGGG-TC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TA-TC-T-TAA--A-TTT--TT-CTT--ACGG-A-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGA-CGCGC---------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACA-T-------TTCTCG--AT-A----G-T-G-TGTGTC------TT----AT-GTAATTGAACTATATATATT----------A-------TG---A-------AG----------ATTCCCTAATAC-AGTAT--AGGT-C-------TATAGATGCGAACACACATCAGAATAAAACA--ATTT-CTCA-G-A-TG-A-AC-AT-TAGCGAAAAAAT-TTTCA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATC-TGACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttGCAGGC-ATGC-TTATGAAGGTATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGA-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-T-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-C-----------------TA-TCAGCC-TG-TTTCACTT-C--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-AC-GT-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC----------TACTCA--AC-AGTGTG-T-G-TGTGTC------TT----AT-G-------------TAC-TG----------AG------T------------GT----------ATT-ACTAGTGC-GTTAC--AGATACATACACATATATATG-G--C-TACA----AATGAAGGG--GAGC-T-CA---A-TGAA-AC-AT------GAAAAA
gi|8 : a---A-------AG----------ATTTCCTAATAC-AG--T--AGGTAC-------TATAGATA-GAACCCACAagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcCAGGG-CTGCCTTAATAAGATATTTTCAAGAT------TTAAGGATATAT--CTTAGTCAGGA-TC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTC-TCGT-TAAAGAGTTT--TT-CTT--A-GG-A-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGA-CGCGT-CTT--GTTTG-G-TTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTT-TTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAA-GA-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACA-T-------TTCTCG--AC------G-T-ATTGTCTC------TT----AT-G-------------TAT-TG----------A--------A---C-------AT----------AT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Alignments
lowQualScore : 222222222 1111111111 11111 1 11 11111 11111 111 1111111 111111 999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222 11111 11111 3333333 555555555555555555 4444444444444444444 1111 111111111 4444444444444444444 1 33333333333333333333333 1111111 22222222 111 1 22 222 111 11 1 666666666666666666666666666666666666666666666666666666666666666 222222 222 1 111 11 111 11 111 1111 11111 1 1 111 111 22
lowQualScore : 5 5 5 000000000 55 3 3 666 88 3 55 3 88 666 5555555555 3 777777 0 3 3 3 44 5 9 3 3 3 44 3 55 3 55 3 3 7 3 7 3 4 4 3 55 3 3 3 3 3 1 77777777 22222 3 3 7 3 33 3 22222 55 3 3 55 22222 3 3 55 3 3 3 5 111 4 4 55 4 3333333 55 111111 4 8 4 111111111111111111111111111111111111111111111111111111111111111111111111111111 2 4 66 4 7777777 1 4 2 5 11111 5 0 999 5 5 5 5 5 66 6 6 1 22222 2 6 99 8 8 8 8 0 8 8 2222222 88 6 1 6 999999999999999999 6 99 3 1 6 6 3 6 6 3 6 6 6 6 6 4444444444444444444 6 2 6 6 4444 77 6 99 1 99 6 444444444 1111111111111111111 77 1 77 9 0 888 5 5 5 66 0 5 33333333333333333333333 66 888 5 5 5 5 4444444 66 66 5 5 5 6 1 66666666 0 0 88 88 111 0 33 333 777 33 3 333333333333333333333333333333333333333333333333333333333333333 888888 5 0 111 7 6 3 6 6 6 111 6 5 66 5 11 333 11 5 333 66 5 0000 00000 1 1 1 77 6 6 99 444 111 8 8 11 6 6
lowQualScore : . . . ......... .. . . ... .. . .. . .. ... .......... . ...... . . . . .. . . . . . .. . .. . .. . . . . . . . . . .. . . . . . . ........ ..... . . . . .. . ..... .. . . .. ..... . . .. . . . . ... . . .. . ....... .. ...... . . . .............................................................................. . . .. . ....... . . . . ..... . . ... . . . . . .. . . . ..... . . .. . . . . . . . ....... .. . . . .................. . .. . . . . . . . . . . . . . ................... . . . . .... .. . .. . .. . ......... ................... .. . .. . . ... . . . .. . . ....................... .. ... . . . . ....... .. .. . . . . . ........ . . .. .. ... . .. ... ... .. . ............................................................... ...... . . ... . . . . . . ... . . .. . .. ... .. . ... .. . .... ..... . . . .. . . .. ... ... . . .. . .
lowQualScore : 0 0 0 999999999 55 6 6 444 66 6 00 6 66 444 9999999999 6 666666 5 3 3 3 66 1 6 6 6 6 22 3 00 6 00 6 6 3 6 3 6 4 6 6 00 6 6 6 6 6 4 77777777 77777 6 6 7 6 66 6 77777 00 6 6 00 77777 6 6 77 6 6 6 1 111 0 0 55 0 0000000 55 000000 0 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111 9 4 11 7 2222222 9 4 2 1 11111 0 4 444 0 0 0 0 0 99 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 5555555 88 7 0 7 333333333333333333 7 22 2 0 7 7 2 7 7 2 7 7 7 7 7 8888888888888888888 7 5 7 7 2222 77 7 22 0 22 7 222222222 9999999999999999999 99 4 11 4 4 888 0 0 0 99 1 0 99999999999999999999999 99 888 0 0 0 0 6666666 99 99 0 7 7 7 0 00000000 8 8 88 88 888 0 88 000 000 88 3 000000000000000000000000000000000000000000000000000000000000000 888888 0 8 666 3 7 3 7 7 7 777 7 7 99 0 99 111 22 0 888 99 7 0000 33333 4 4 0 99 7 7 22 888 888 0 0 22 7 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT-----A-----TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT-----A-----TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGG-TGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TA-TC-T-TAA-GA-TTT--TTTCTT--A-GG-AAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGG-CGCCTTCTTTGGTTTG-G-TTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTT-CTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GA-ATGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACA-TGTAACACTTTTCG--AC-T----G-T-G-TGTTTT------GTCTTAAT-G-------------TAT-TG----------AAGCCATATA---A-------CTGTACAAGACAATTCCCTAATAC-AGTTTCAGGGTGC-----TAT-TAGATG-GAACACACATCAGAATAAAAA-----TC-TACA-G-AATG-A-ACCAT-TA--GGAAAATT-TCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-C-TGA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGAT-AAGAGTCCGAATGA-GAGTTT-----AATAAATGAGC-GC--TT---CTTGC-TAG-GGG-C-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATT--------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC---CTTATAGAGAGATT--T--TGA---AAG-GTTGG--TTGCGTCA-AC-AATAGACCAAGT---GC-ACG-GGGTGTTTGGTT--GTGAAGG----A----C-----TCGCC---ACT--A---TAGG-AC-AATAGGG-A----G--AGGG--G-TCG-TCAAA-GT-GTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAAAAA-AAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GAT---AATTAACCTGAGGGA-C---CCTTTT-TATTTACATTTCCT-AGATGG-CATTCTTTAAG--ATAGTCCTAAGATGTTGGTTC-TAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTT--TT-CTTTAA-GGAA-T-ATAT-CTTA-AC--TTAAGACCTCA---GAAC--TTGT-CC-TATGGA-CGCGT-CT---GTTTGTG-TTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTT-C--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AA-GT-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGA-A-------ATCTCGCCGC-A----GCT-G-TGTGTC------TT----AT-G-------------TACA------------A-------TA---A-------g
gi|10 : ACGCACATTAGAATAAAAACCTCATC-TACA-G-A-TG-ACAC-ATGTA--GGAAAAActgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAATG-AATAATGGGAT-AAGAGTCCGAATGG-G---TTATG--A-----TGAGC-GCTTTTTTTCTCGTATAGTTGGTC-GTT-GTT--GA-TTTGACCAT-G-AGCCAAGGAG-TTGGAC-A-TTTGTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA-C--TTGTTTTG-AAA--TTTCCA---AA-TCC----TC---CTTAT-GAGAAGAT--T--TGA---AGACGTTGATCTTG-GTGA-AC-AATAGACCAAGT---GC-AAC-GGGTGTTT-GTT--GTGAA-G----A----CGTCGTT---C---ACT--A---TA-G-ACGAATAGGA-G----A--A--G--G-TAT-TCAAA--T-GAAAATAACGAAAG-----G--AAAAa
gi|12 : aTGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGA-CGCGT-CTTTGG--TG-----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTT-C--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AA-GT-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-T---AAACAAAAATC-TTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--A--TCG-CTT---GC-T---CC-TTTGAATTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccTC-TTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---A--TAA-CTGA--GA-T---TC-TTTTATTTTACA--TCCTAAGAT-G-CAT--CTTAGG--ATAGTCCTAAGATGT--GTCT-TAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : GCAGGC-GTGC-TTATGAAACTATCTT-AAAATATACCCT--AAGATCTAT--CTTAC-GAGGATTC---TTAG--G-AC-TAT--C-T--TA---AG----------GTT-GC-T---CCA-TCCTT--G-ATG-C--T
gi|15 : caCTTAAGATA---GTCC-TAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCTtttatggttaaatccatgtgatttttgtttaaaat
gi|16 : cagcCA------TATTAACAAATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAAT---AA-CAAAAATC-TTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---A--TCG-CT-----A-C---CCTTTT-AATTTA-A--TCCTAAGAT-G-CAT--gttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACATAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---A--TA
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGAT------A--AGAATATAT--CTTTA-CCAGG-TC---T-ACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C--TA--CCTA-TC---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGAT------T--A-GATATATTTCTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TA-TC-T-TAG-AA-GTT--TT-TTT--A-GG-A-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-A-CGCGT-CTTTG------G-TTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTT-CT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AA-GT-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-GTTATTTGAAC---TATATG----------A-------TATATA-------AG----------ATT-CCTAATAC-AGCAT--AGGTTC-------TATAGATG-GAACAC-CATCAGAAT--AAAA--AATCTTACA-G-A-TA-A-AC-AT-TA--GGAAAAATGTTTCA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATG-ACTAATAGGAT-AAGAGTT---ATGA-A---TT-----A--------GC-GC--TGTTCTTCGC-TAG-TGGTC-GTA-TTTTGGATTTTGACCATCA-AG-CAAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT--AA-CCCG--TTC---CT--TAGAGA---------------------TGG--TTGCGTC--AC-AATAGACAAGGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----ACTCGC-----T---C---ACT--A---TA-G-AC-AATAGGG-AACACA--G--G--G-TCG-TCAAACGTGGAATACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAGAGAGAG-----A--AAAAT-ATTC-AAATA--TCT--ATTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--ttgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACA--AAG-GTGA--GAGCGCGCT-TTT-ATTTTACA--TCCTATAAT-G-GAT--CTTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctc---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--GGTTG-TCAAA-AT-GAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT--A
gi|21 : AAATTGAGCAAGT---GCGACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---GCTCGATACTA-G-GA-AAT-GGG-A----T--A--G--G-
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTgtat
gi|23 : GA---G---ATTGG--TTG-GTCA-ACAA-TAAACCAAGT---GC-ATG-GGGTGTTT-GTT--GTGAA-G----gct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCT
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----------AGATATAT--CTTGG-C-GTA-TC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG----TGTTCCTA-TC-T-TAA-GA-TTT--T--CTT--A-GG-A-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGA-CGCGT-CTTTGGTTTG-T-TTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACA-T-------T-CTAG--AC-A----G-T-G----G--------GT----AT-A-------------TACATG----------A-------TA---A-------A-----------ATTCC-TAACACGACTAT--AGGTCC-----TATATAGATG-GAACACA-ATTAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TG--G--AAAAT-TTTCACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-C-TGA-GGTTTATTGACA-G-GAC-AGATTA-------GAGGGGAGGGGGCAAATG-AATAATGGGAT-AAGAGTCCGAAT--------------------TGAG--GT--TATTTCTCGC-TAG-TGGGC-GTTCGTTTGGATTTTGACAAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT--AACCCCG--TTTTCACTTACAG-GAGATTGAT--TG----A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GG-------------------------------------------TT--A---TA-G-AC-AATA-GG-A----G--A--G--G-TCGTTCCAA-GT-GGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T-ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTG--ACAT-AA--CGCAAAATAT-TAATGTTTGAAT-TGAA-T---AA-CAAAAAAT-TTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-ATTTTACA--TCCTAAGAT-G-CAT--TTTAAG--CTAGTCCTAAGATGT--GTCC-TAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : ATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTA-TC-T-TAA--A-TTTTATT-CTT--A-GG-ATT-ATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-C--TA-GGACCGCGT-CTGT-GTTTG-GTTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCC--ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-C-GCT-G-TTTTTG---GATG-AGCA--TAACATT-------TTTTCG--AC-A----G-TGG-TGTGTCAACTGTGT----GT-G-------------TCTATGTATTGAACATA-------TA---ATGTATATAT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA---ATG-GAACACACATCGGAAT-AAAAA--AATA-TACATGCA-TG-A-AA-CT-TA--GGAAAAAT-TTCCA-TGCCAA--------------------TTTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGTGGAGGGG---ATG-AATAAT-GGATAAAGAGTCCGAATGAGG---TTTATAAA-----TGAGC-GC--TTTTT---GC-TAG-T-GTC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAA-CCCG--TTC---CTTATAGAGAGA----T--TGAAAGA---GTTGG--TTG-GTCA-ACAATGAGACC-AGT---GC-AC--GGGTGTTT-GTT--G-GAA-GGACCG----C-----T---C---AAT--A---TA-GAAC-AATAGGGAA----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCT--ATTATTCG--CAAAAGAC-A-GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : TACCACATAAA--CGCAAA-T-T-TAATGTTTG-A---GAA-T---AA-CAAAAATC-TTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-TATTTACA--TCCTAA-AT-GACAT--CTTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaatta-TTT--TT-CTT--A-GG-A-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGCTTTG-G-TTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTT-T--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AA-GT-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTTG--AC-A----G-T-G-TGTCTC------TT----AT-G-------------TAT-TG----------A-------
gi|5 : TTCCCTAATAC-AGTAT--AGGTGC-------TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcAGTGA-G---TTTTAA-A-----TGAGCCGC--TTGTTCTCGC-TA--TGGTCCGTA-GT---GGTTTTGACCAT-GCAG-CAAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTGTTT-G-A------TAGAT--G---------------TTACACAAAAGTG--TAATGA---A---AATCC--TTG-TTCCTGTATATAGA--AAGTATCGA-ACGCGGGTTTTT-GTTCCGTGAA-G----A----C-----T---CCTCACT--A---TA-G-AC-AAAAGGG-G----GCAA--GGTG-TCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaGCAGGC-ATGT-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGA-CGCGT-CTTTGGTTTG-G------------------ATA-TCAGCC-TGTTT-CACTT-C--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACA-T-------TTCTTG--ACTA----G-TTG-TTTGTCTTTT--GT----ATTGAAC----------TATATG----------A-------TA---T-------ATG---------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA--GATG-AGAAACACATCAGAATAAAAAA--A-TC-TAC--T-A-TG-A-AC-AT-TA--GGAATAAT-TTTCA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-C-TGA-AGTTT-TTGAAATG-AAC-AGATTA-------GAGGGGGGGGGGGCAATG-AATAATGGGAT-AAGA
gi|7 : AT------G--AACATATAT--CTT-G-CAGGG-TC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TA-TC-T-TAA--A-TTT--TT-CTT--ACGG-A-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGA-CGCGC---------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACA-T-------TTCTCG--AT-A----G-T-G-TGTGTC------TT----AT-GTAATTGAACTATATATATT----------A-------TG---A-------AG----------ATTCCCTAATAC-AGTAT--AGGT-C-------TATAGATGCGAACACACATCAGAATAAAACA--ATTT-CTCA-G-A-TG-A-AC-AT-TAGCGAAAAAAT-TTTCA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATC-TGACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttGCAGGC-ATGC-TTATGAAGGTATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGA-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-T-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-C-----------------TA-TCAGCC-TG-TTTCACTT-C--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-AC-GT-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC----------TACTCA--AC-AGTGTG-T-G-TGTGTC------TT----AT-G-------------TAC-TG----------AG------T------------GT----------ATT-ACTAGTGC-GTTAC--AGATACATACACATATATATG-G--C-TACA----AATGAAGGG--GAGC-T-CA---A-TGAA-AC-AT------GAAAAA
gi|8 : a---A-------AG----------ATTTCCTAATAC-AG--T--AGGTAC-------TATAGATA-GAACCCACAagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcCAGGG-CTGCCTTAATAAGATATTTTCAAGAT------TTAAGGATATAT--CTTAGTCAGGA-TC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTC-TCGT-TAAAGAGTTT--TT-CTT--A-GG-A-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGA-CGCGT-CTT--GTTTG-G-TTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTT-TTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAA-GA-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACA-T-------TTCTCG--AC------G-T-ATTGTCTC------TT----AT-G-------------TAT-TG----------A--------A---C-------AT----------AT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Alignments
lowQualScore : 222222222 1111111111 11111 1 11 11111 11111 111 1111111 111111 999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222 11111 11111 3333333 555555555555555555 4444444444444444444 1111 111111111 4444444444444444444 1 33333333333333333333333 1111111 22222222 111 1 22 222 111 11 1 666666666666666666666666666666666666666666666666666666666666666 222222 222 1 111 11 111 11 111 1111 11111 1 1 111 111 22
lowQualScore : 5 5 5 000000000 55 3 3 666 88 3 55 3 88 666 5555555555 3 777777 0 3 3 3 44 5 9 3 3 3 44 3 55 3 55 3 3 7 3 7 3 4 4 3 55 3 3 3 3 3 1 77777777 22222 3 3 7 3 33 3 22222 55 3 3 55 22222 3 3 55 3 3 3 5 111 4 4 55 4 3333333 55 111111 4 8 4 111111111111111111111111111111111111111111111111111111111111111111111111111111 2 4 66 4 7777777 1 4 2 5 11111 5 0 999 5 5 5 5 5 66 6 6 1 22222 2 6 99 8 8 8 8 0 8 8 2222222 88 6 1 6 999999999999999999 6 99 3 1 6 6 3 6 6 3 6 6 6 6 6 4444444444444444444 6 2 6 6 4444 77 6 99 1 99 6 444444444 1111111111111111111 77 1 77 9 0 888 5 5 5 66 0 5 33333333333333333333333 66 888 5 5 5 5 4444444 66 66 5 5 5 6 1 66666666 0 0 88 88 111 0 33 333 777 33 3 333333333333333333333333333333333333333333333333333333333333333 888888 5 0 111 7 6 3 6 6 6 111 6 5 66 5 11 333 11 5 333 66 5 0000 00000 1 1 1 77 6 6 99 444 111 8 8 11 6 6
lowQualScore : . . . ......... .. . . ... .. . .. . .. ... .......... . ...... . . . . .. . . . . . .. . .. . .. . . . . . . . . . .. . . . . . . ........ ..... . . . . .. . ..... .. . . .. ..... . . .. . . . . ... . . .. . ....... .. ...... . . . .............................................................................. . . .. . ....... . . . . ..... . . ... . . . . . .. . . . ..... . . .. . . . . . . . ....... .. . . . .................. . .. . . . . . . . . . . . . . ................... . . . . .... .. . .. . .. . ......... ................... .. . .. . . ... . . . .. . . ....................... .. ... . . . . ....... .. .. . . . . . ........ . . .. .. ... . .. ... ... .. . ............................................................... ...... . . ... . . . . . . ... . . .. . .. ... .. . ... .. . .... ..... . . . .. . . .. ... ... . . .. . .
lowQualScore : 0 0 0 999999999 55 6 6 444 66 6 00 6 66 444 9999999999 6 666666 5 3 3 3 66 1 6 6 6 6 22 3 00 6 00 6 6 3 6 3 6 4 6 6 00 6 6 6 6 6 4 77777777 77777 6 6 7 6 66 6 77777 00 6 6 00 77777 6 6 77 6 6 6 1 111 0 0 55 0 0000000 55 000000 0 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111 9 4 11 7 2222222 9 4 2 1 11111 0 4 444 0 0 0 0 0 99 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 5555555 88 7 0 7 333333333333333333 7 22 2 0 7 7 2 7 7 2 7 7 7 7 7 8888888888888888888 7 5 7 7 2222 77 7 22 0 22 7 222222222 9999999999999999999 99 4 11 4 4 888 0 0 0 99 1 0 99999999999999999999999 99 888 0 0 0 0 6666666 99 99 0 7 7 7 0 00000000 8 8 88 88 888 0 88 000 000 88 3 000000000000000000000000000000000000000000000000000000000000000 888888 0 8 666 3 7 3 7 7 7 777 7 7 99 0 99 111 22 0 888 99 7 0000 33333 4 4 0 99 7 7 22 888 888 0 0 22 7 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT-----A-----TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT-----A-----TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGG-TGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TA-TC-T-TAA-GA-TTT--TTTCTT--A-GG-AAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGG-CGCCTTCTTTGGTTTG-G-TTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTT-CTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GA-ATGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACA-TGTAACACTTTTCG--AC-T----G-T-G-TGTTTT------GTCTTAAT-G-------------TAT-TG----------AAGCCATATA---A-------CTGTACAAGACAATTCCCTAATAC-AGTTTCAGGGTGC-----TAT-TAGATG-GAACACACATCAGAATAAAAA-----TC-TACA-G-AATG-A-ACCAT-TA--GGAAAATT-TCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-C-TGA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGAT-AAGAGTCCGAATGA-GAGTTT-----AATAAATGAGC-GC--TT---CTTGC-TAG-GGG-C-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATT--------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC---CTTATAGAGAGATT--T--TGA---AAG-GTTGG--TTGCGTCA-AC-AATAGACCAAGT---GC-ACG-GGGTGTTTGGTT--GTGAAGG----A----C-----TCGCC---ACT--A---TAGG-AC-AATAGGG-A----G--AGGG--G-TCG-TCAAA-GT-GTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAAAAA-AAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GAT---AATTAACCTGAGGGA-C---CCTTTT-TATTTACATTTCCT-AGATGG-CATTCTTTAAG--ATAGTCCTAAGATGTTGGTTC-TAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTT--TT-CTTTAA-GGAA-T-ATAT-CTTA-AC--TTAAGACCTCA---GAAC--TTGT-CC-TATGGA-CGCGT-CT---GTTTGTG-TTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTT-C--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AA-GT-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGA-A-------ATCTCGCCGC-A----GCT-G-TGTGTC------TT----AT-G-------------TACA------------A-------TA---A-------g
gi|10 : ACGCACATTAGAATAAAAACCTCATC-TACA-G-A-TG-ACAC-ATGTA--GGAAAAActgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatacgcacattagaataaaaacctcatctacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAATG-AATAATGGGAT-AAGAGTCCGAATGG-G---TTATG--A-----TGAGC-GCTTTTTTTCTCGTATAGTTGGTC-GTT-GTT--GA-TTTGACCAT-G-AGCCAAGGAG-TTGGAC-A-TTTGTTATC-AA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA-C--TTGTTTTG-AAA--TTTCCA---AA-TCC----TC---CTTAT-GAGAAGAT--T--TGA---AGACGTTGATCTTG-GTGA-AC-AATAGACCAAGT---GC-AAC-GGGTGTTT-GTT--GTGAA-G----A----CGTCGTT---C---ACT--A---TA-G-ACGAATAGGA-G----A--A--G--G-TAT-TCAAA--T-GAAAATAACGAAAG-----G--AAAAa
gi|12 : aTGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGA-CGCGT-CTTTGG--TG-----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTT-C--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AA-GT-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-T---AAACAAAAATC-TTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--A--TCG-CTT---GC-T---CC-TTTGAATTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccTC-TTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---A--TAA-CTGA--GA-T---TC-TTTTATTTTACA--TCCTAAGAT-G-CAT--CTTAGG--ATAGTCCTAAGATGT--GTCT-TAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : GCAGGC-GTGC-TTATGAAACTATCTT-AAAATATACCCT--AAGATCTAT--CTTAC-GAGGATTC---TTAG--G-AC-TAT--C-T--TA---AG----------GTT-GC-T---CCA-TCCTT--G-ATG-C--T
gi|15 : caCTTAAGATA---GTCC-TAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCTtttatggttaaatccatgtgatttttgtttaaaat
gi|16 : cagcCA------TATTAACAAATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAAT---AA-CAAAAATC-TTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---A--TCG-CT-----A-C---CCTTTT-AATTTA-A--TCCTAAGAT-G-CAT--gttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACATAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---A--TA
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGAT------A--AGAATATAT--CTTTA-CCAGG-TC---T-ACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C--TA--CCTA-TC---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGAT------T--A-GATATATTTCTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TA-TC-T-TAG-AA-GTT--TT-TTT--A-GG-A-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-A-CGCGT-CTTTG------G-TTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTT-CT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AA-GT-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-GTTATTTGAAC---TATATG----------A-------TATATA-------AG----------ATT-CCTAATAC-AGCAT--AGGTTC-------TATAGATG-GAACAC-CATCAGAAT--AAAA--AATCTTACA-G-A-TA-A-AC-AT-TA--GGAAAAATGTTTCA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATG-ACTAATAGGAT-AAGAGTT---ATGA-A---TT-----A--------GC-GC--TGTTCTTCGC-TAG-TGGTC-GTA-TTTTGGATTTTGACCATCA-AG-CAAGGAG-TTGGAC-A-TTTGTT-TCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT--AA-CCCG--TTC---CT--TAGAGA---------------------TGG--TTGCGTC--AC-AATAGACAAGGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----ACTCGC-----T---C---ACT--A---TA-G-AC-AATAGGG-AACACA--G--G--G-TCG-TCAAACGTGGAATACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAGAGAGAG-----A--AAAAT-ATTC-AAATA--TCT--ATTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--ttgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACA--AAG-GTGA--GAGCGCGCT-TTT-ATTTTACA--TCCTATAAT-G-GAT--CTTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctc---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--GGTTG-TCAAA-AT-GAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT--A
gi|21 : AAATTGAGCAAGT---GCGACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---GCTCGATACTA-G-GA-AAT-GGG-A----T--A--G--G-
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTgtat
gi|23 : GA---G---ATTGG--TTG-GTCA-ACAA-TAAACCAAGT---GC-ATG-GGGTGTTT-GTT--GTGAA-G----gct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCT
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----------AGATATAT--CTTGG-C-GTA-TC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG----TGTTCCTA-TC-T-TAA-GA-TTT--T--CTT--A-GG-A-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGA-CGCGT-CTTTGGTTTG-T-TTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACA-T-------T-CTAG--AC-A----G-T-G----G--------GT----AT-A-------------TACATG----------A-------TA---A-------A-----------ATTCC-TAACACGACTAT--AGGTCC-----TATATAGATG-GAACACA-ATTAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TG--G--AAAAT-TTTCACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-C-TGA-GGTTTATTGACA-G-GAC-AGATTA-------GAGGGGAGGGGGCAAATG-AATAATGGGAT-AAGAGTCCGAAT--------------------TGAG--GT--TATTTCTCGC-TAG-TGGGC-GTTCGTTTGGATTTTGACAAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT--AACCCCG--TTTTCACTTACAG-GAGATTGAT--TG----A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GG-------------------------------------------TT--A---TA-G-AC-AATA-GG-A----G--A--G--G-TCGTTCCAA-GT-GGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T-ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTG--ACAT-AA--CGCAAAATAT-TAATGTTTGAAT-TGAA-T---AA-CAAAAAAT-TTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-ATTTTACA--TCCTAAGAT-G-CAT--TTTAAG--CTAGTCCTAAGATGT--GTCC-TAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : ATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTA-TC-T-TAA--A-TTTTATT-CTT--A-GG-ATT-ATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-C--TA-GGACCGCGT-CTGT-GTTTG-GTTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCC--ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-C-GCT-G-TTTTTG---GATG-AGCA--TAACATT-------TTTTCG--AC-A----G-TGG-TGTGTCAACTGTGT----GT-G-------------TCTATGTATTGAACATA-------TA---ATGTATATAT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA---ATG-GAACACACATCGGAAT-AAAAA--AATA-TACATGCA-TG-A-AA-CT-TA--GGAAAAAT-TTCCA-TGCCAA--------------------TTTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA-------GGGGTGGAGGGG---ATG-AATAAT-GGATAAAGAGTCCGAATGAGG---TTTATAAA-----TGAGC-GC--TTTTT---GC-TAG-T-GTC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-------------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAA-CCCG--TTC---CTTATAGAGAGA----T--TGAAAGA---GTTGG--TTG-GTCA-ACAATGAGACC-AGT---GC-AC--GGGTGTTT-GTT--G-GAA-GGACCG----C-----T---C---AAT--A---TA-GAAC-AATAGGGAA----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCT--ATTATTCG--CAAAAGAC-A-GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : TACCACATAAA--CGCAAA-T-T-TAATGTTTG-A---GAA-T---AA-CAAAAATC-TTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-TATTTACA--TCCTAA-AT-GACAT--CTTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaatta-TTT--TT-CTT--A-GG-A-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGCTTTG-G-TTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTT-T--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AA-GT-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTTG--AC-A----G-T-G-TGTCTC------TT----AT-G-------------TAT-TG----------A-------
gi|5 : TTCCCTAATAC-AGTAT--AGGTGC-------TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcAGTGA-G---TTTTAA-A-----TGAGCCGC--TTGTTCTCGC-TA--TGGTCCGTA-GT---GGTTTTGACCAT-GCAG-CAAGGAGATTGGACCATGTT--T-TC-AAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTGTTT-G-A------TAGAT--G---------------TTACACAAAAGTG--TAATGA---A---AATCC--TTG-TTCCTGTATATAGA--AAGTATCGA-ACGCGGGTTTTT-GTTCCGTGAA-G----A----C-----T---CCTCACT--A---TA-G-AC-AAAAGGG-G----GCAA--GGTG-TCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaGCAGGC-ATGT-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGA-CGCGT-CTTTGGTTTG-G------------------ATA-TCAGCC-TGTTT-CACTT-C--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACA-T-------TTCTTG--ACTA----G-TTG-TTTGTCTTTT--GT----ATTGAAC----------TATATG----------A-------TA---T-------ATG---------ATTCCCTAATAC-AGTAT--AGGTGC-----TATA--GATG-AGAAACACATCAGAATAAAAAA--A-TC-TAC--T-A-TG-A-AC-AT-TA--GGAATAAT-TTTCA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-C-TGA-AGTTT-TTGAAATG-AAC-AGATTA-------GAGGGGGGGGGGGCAATG-AATAATGGGAT-AAGA
gi|7 : AT------G--AACATATAT--CTT-G-CAGGG-TC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TA-TC-T-TAA--A-TTT--TT-CTT--ACGG-A-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGA-CGCGC---------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACA-T-------TTCTCG--AT-A----G-T-G-TGTGTC------TT----AT-GTAATTGAACTATATATATT----------A-------TG---A-------AG----------ATTCCCTAATAC-AGTAT--AGGT-C-------TATAGATGCGAACACACATCAGAATAAAACA--ATTT-CTCA-G-A-TG-A-AC-AT-TAGCGAAAAAAT-TTTCA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATC-TGACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttGCAGGC-ATGC-TTATGAAGGTATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGA-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-T-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-C-----------------TA-TCAGCC-TG-TTTCACTT-C--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-AC-GT-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC----------TACTCA--AC-AGTGTG-T-G-TGTGTC------TT----AT-G-------------TAC-TG----------AG------T------------GT----------ATT-ACTAGTGC-GTTAC--AGATACATACACATATATATG-G--C-TACA----AATGAAGGG--GAGC-T-CA---A-TGAA-AC-AT------GAAAAA
gi|8 : a---A-------AG----------ATTTCCTAATAC-AG--T--AGGTAC-------TATAGATA-GAACCCACAagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcCAGGG-CTGCCTTAATAAGATATTTTCAAGAT------TTAAGGATATAT--CTTAGTCAGGA-TC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTC-TCGT-TAAAGAGTTT--TT-CTT--A-GG-A-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGA-CGCGT-CTT--GTTTG-G-TTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTT-TTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAA-GA-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACA-T-------TTCTCG--AC------G-T-ATTGTCTC------TT----AT-G-------------TAT-TG----------A--------A---C-------AT----------AT
blockSeqs : C C C ATACCCT TT T T . AA G . A G TTA . . ATT C C G . C C T G G AG G TA . TA C A T A T T T T G CT T G T C . G TTTTTG A A . T C TA T C AG G A AA CACGA . A AG . C T G GA A T AT T . CC AGTGT C G T AACTGTGTGTGTCTATGTATTGAACATATAATGTATATAT C G . T ATACACA T C G A CCTCA T TGC . A C . G GC G C T GGG C T . T T C A . T . GC . G A GGTTTATAAA C TT T C A T T C C T C C C A C TGTTTTCAAATGTCA C C A . ATTT C A AT C AA C GTTTTCA AGATTTGAAGAC TC C CT A ATC G C . CC . ACGTCGTTC CG TAC . A G A ACACA . GT G T C G A AGAGAA A T A C C TT TTG AA C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A A A A G A G A . A . AA A AA GAT T C CAC . . GA GCGCG T G A . . A . ATT T T C TT . T
blockSeqs : . . . TTA . . . . T . . . . . . . AT . . . . C C . . . G . . . . . . . . . . T T . . . . . . . G TGTTT . . . T . T . . . . . . G . . A . . . G CT . . . . . . TA . T . GTATGTTATTTGAACTATATGATATATAAG C . . C TA T . A A AAA . G . . . . . . . . T G C . . . . . . . . . CA . A . GTTTTAAA . . T T . . T . . T . . . . . TTTGTTATCAATGT . G . . . A . . A . . GTTC AGTGTAATGAA . . A A . . . . . . ACTCGCTC . . . . . . GCA . . . . . . G ATG A T A . . T T . . . C A A . G . . . . . . . . . T G . A . . GA T . T T . . . . A T . . T . .
blockSeqs : . . . A . . . . . . . . . . . . CT . . . . T C . . . G . . . . . . . . . . T T . . . . . . . G GTTTT . . . T . . . . . . . . . . . A . . . T G . . . . . . A . . . TTATGTAATTGAACTATATATATTATGAAG C . . G TA T . A A AAA . G . . . . . . . . A G C . . . . . . . . . GC . G . GTTATGA . . T C . . G . . T . . . . . TTTGTTTCAAATGT . G . . . G . . T . . GTTC GATTGATTGA . . A A . . . . . . GACCGCTC . . . . . . A . . . . . . T G A T A . . A . . . C . A . . . . . . . . . . . G T . . . . GA T . . A . . . . C T . . T . .
blockSeqs : . . . T . . . . . . . . . . . . AT . . . . C C . . . G . . . . . . . . . . T A . . . . . . . G GTTT . . . T . . . . . . . . . . . A . . . G G . . . . . . A . . . TTTTGTATTGAACTATATGATATATG C . . G TA T . A A AAA . G . . . . . . . . T G . . . . . . . . . . . G . ATTA . . T C . . T . . . . . . . . TTTTGTTTCAATAT . G . . . A . . C . . TC GATTGAAAGA . . A A . . . . . . ACTCCTC . . . . . . G . . . . . . G A . . . . . . . . . . . . . . . . . T T . . . . GA C . . T . . . . . . . T . .
blockSeqs : . . . T . . . . . . . . . . . . AT . . . . A C . . . A . . . . . . . . . . T T . . . . . . . G GTTT . . . . . . . . . . . . . . . A . . . A G . . . . . . A . . . GTATATACATGATAAA C . . G . T . C G AAT . T . . . . . . . . A . . . . . . . . . . G . . . T . . . . . . . . . . . . . . T . . G . . . . . . A A . . . . . . ACTC . . . . . . T . . . . . . T A . . . . . . . . . . . . T T . . . . T C . . T . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . AT . . . . C C . . . G . . . . . . . . . . T T . . . . . . . G GTTT . . . . . . . . . . . . . . . A . . . C G . . . . . . A . . . TTATGTACTGAGTGT T . . A . T . A . GGA . G . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . C . . A .
blockSeqs : . . . T . . . . . . . . . . . . AT . . . . C T . . . G . . . . . . . . . . T T . . . . . . . . TT . . . . . . . . . . . . . . . C . . . G A . . . . . . A . . . TTATGTATTGAACAT . . . A . . . A . AA . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . AA . . . . . . . . . G . . . . . . . . . . . A . . . . . . . . GC . . . . . . . . . . . . . . . A . . . G T . . . . . . A . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : *** ** ** ********** AT**** ** ***** ** ***** G** ******* ** A****** AAA** G**** ** GTTTGA************ TTTGTTTTCAATGT***** N* GTTC***** GATTTAATGA********* ACTCGCTC*************** ** A******* A* T* A** *** *** ** T* ** GA** ** ** T**
originalCons : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-----TATATAGATG-GAACACACATCAGAATAAAAAA--AATC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGA-G---TT-----A-----TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTTGTT-TC-AA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGAGATT--T--TGA---A---GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-G----A----C-----T---C---ACT--A---TA-G-AC-AATAGGG-A----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
finalCons : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AAT----CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTT--TT-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGA-CGCGT-CTTTGGTTTG-G-TTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTT-C--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AA-GT-TT-T-CGGCTG--TTTTTGGT-GATG-TTCA--TTACA-T-------TTCTCG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGCA------TATAGATG-GAACACACATCAGAATAAAAAAAA--TC-TACA-G-A-TG-A-AC-AT-TA--GGAAAAAT-TTTCA-TGCCANTAATGTG----CAAGCTG-TTTTT--GATTCACAG-C-TGA-AGTTT-TTGACATG-GAC-AGATTA-------GGGGGGGGGGGGGNAATG-AATAATGGGAT-AAGAGTCCGAATGAGTTTGA------------TGAGC-GC--TTTTTCTCGC-TAG-TGGTC-GTT-GTTTGGATTTTGACCAT-G-AG-CAAGGAG-TTGGAC-ATTTGTTTTCAATGT-----GTA-TACATGTCGG-CATGTA-T----TTGAN-CATTGTTTTG-AAA--TTTACAT--AA-CCCGTTC-----CTTATAGAGAGATTTAATGA---------GTTGG--TTG-GTCA-ACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-GACTCGCTC---------------ACT--A---TA-G-AC-AATAGGG-A----G--A--G--G-TCG-TCAAA-GT-GAATACAGAGANAGA-------AGAATTATTCA-AATAT-TCTA--TTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAA---CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222 1111111111 11111 1 11 11111 11111 111 1111111 111111 000000000000000000000000000000000000000000000000000000000000000000000000000000 22 3333333333 11111 33333333 11111 5555555 111 3333333333333333 1111 111111111 33333333333333 1 1111111111 22222222 111 1 22 222 111 11 1 666666666666666666666666666666666666666666666666666666666666666 222222 222 1 111 11 111 11 111 1111 11111 1 1 111 111 22
lowQualScore : 5 5 5 000000000 55 3 3 666 88 3 55 3 88 666 5555555555 3 777777 0 3 3 3 44 5 9 3 3 3 44 3 55 3 55 3 3 3 7 7 3 4 4 3 55 3 3 3 3 3 3 333 88 22222 3 3 3 4 77 3 22222 55 3 3 55 22222 3 3 2 3 3 3 3 22 111 4 4 55 3333333 4 55 111111 4 4 8 000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 88 3 55 4 1111111111 5 66 666 5 5 5 5 66 0 5 5 5 1 22222 2 6 99 8 8 8 8 0 8 8 66666666 88 1 6 11111 1111111 6 3 000 6 6 6 6 3 6 6 6 6 6 1111111111111111 6 2 6 6 4444 77 6 99 1 99 6 444444444 77 33333333333333 77 1 1 3 6 888 5 5 5 66 0 5 5 0 1 5 5 5 5 5 9999999999 66 5 5 6 1 66666666 0 0 88 88 111 0 33 333 777 33 3 333333333333333333333333333333333333333333333333333333333333333 888888 5 222 7 6 3 6 6 6 111 6 5 66 5 11 333 11 5 333 66 5 0000 00000 1 1 1 77 6 6 99 444 111 8 8 11 6 6
lowQualScore : . . . ......... .. . . ... .. . .. . .. ... .......... . ...... . . . . .. . . . . . .. . .. . .. . . . . . . . . . .. . . . . . . ... .. ..... . . . . .. . ..... .. . . .. ..... . . . . . . . .. ... . . .. ....... . .. ...... . . . .............................................................................. . . .. . .. . .......... . .. ... . . . . .. . . . . . ..... . . .. . . . . . . . ........ .. . . ..... ....... . . ... . . . . . . . . . . ................ . . . . .... .. . .. . .. . ......... .. .............. .. . . . . ... . . . .. . . . . . . . . . . .......... .. . . . . ........ . . .. .. ... . .. ... ... .. . ............................................................... ...... . ... . . . . . . ... . . .. . .. ... .. . ... .. . .... ..... . . . .. . . .. ... ... . . .. . .
lowQualScore : 0 0 0 999999999 55 6 6 444 66 6 00 6 66 444 9999999999 6 666666 5 3 3 3 66 1 6 6 6 6 22 3 00 6 00 6 6 6 3 3 6 4 6 6 00 6 6 6 6 6 6 999 66 77777 6 6 3 4 33 6 77777 00 6 6 00 77777 6 6 1 6 6 6 6 11 111 0 0 55 0000000 0 55 000000 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 4 6 66 5 00 4 6666666666 0 99 222 0 0 0 0 99 2 0 7 7 0 55555 5 7 22 0 0 0 0 8 0 0 22222222 88 0 7 77777 2222222 7 3 222 7 7 7 7 2 7 7 7 7 7 0000000000000000 7 5 7 7 2222 77 7 22 0 22 7 222222222 77 11111111111111 99 4 7 2 5 888 0 0 0 99 1 0 7 7 4 0 0 0 0 0 4444444444 99 7 7 7 0 00000000 8 8 88 88 888 0 88 000 000 88 3 000000000000000000000000000000000000000000000000000000000000000 888888 0 000 3 7 3 7 7 7 777 7 7 99 0 99 111 22 0 888 99 7 0000 33333 4 4 0 99 7 7 22 888 888 0 0 22 7 7
consensus : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-CG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-ATATAGATG-GAACACACATCAGAATAAAAAA-------AATC-TA--CA-G-A-TGA-AC-AT-TA--GGA-AAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-CT-GA-AGTTT-TTGACATG-GAC-AGATTA--------GGGGGGGGGGGGGNAATGAATAATGGGAT-AAGAGTCCGAAT--GA-GTT-T----AATGAGC-GCTTTTT--CTCGC-TAGT-GGTC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTGTTTTCAA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGA-GATTTAATGA---G----TTGGT--TG-GTCAACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-GAC-TCGCTCACTA-TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAAA--CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
Reference ( family-4812 ) : TGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGTCCCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GTTT--GGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-T-CGGCT-G-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-CG--AC-A----G-T-G-TGTGTC------GT----AT-G-------------TATATG----------A-------TA---A-------AT----------ATTCCCTAATAC-AGTAT--AGGTGC-ATATAGATG-GAACACACATCAGAATAAAAAA-------AATC-TA--CA-G-A-TGA-AC-AT-TA--GGA-AAAAT-TTTCA-TGCCANTAATGT--G--CAAGCTG-TTTTT--GATTCACAG-CT-GA-AGTTT-TTGACATG-GAC-AGATTA--------GGGGGGGGGGGGGNAATGAATAATGGGAT-AAGAGTCCGAAT--GA-GTT-T----GATGAGC-GCTTTTT--CTCGC-TAGT-GGTC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATTTGTTTTCAA-TGT--GTA-TACATGTCGG-CATGTA-T----TTGA-NCATTGTTTTG-AAA--TTTACAT--AA-CCCG--TTC---CTTATAGAGA-GATTTAATGA---G----TTGGT--TG-GTCAACAAATAGACCAAGT---GC-ACG-GGGTGTTT-GTT--GTGAA-GAC-TCGCTCACTA-TA-G-AC-AATAGGG-A----G--A--G--GTCG-TCAAA-GT-GAATACAGAGANAG-----A--AGAATTATTC-AAATA-TTCT--ATTATT-G--TAAAAGACTT-GTTGAACAT--GATTTT--AAGAA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TATTACCACATAA---CGCAAAAT-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAG-CTGA--GA-C---CC-TTT-ANTTTACA--TCCTAAGAT-G-CAT--CTTAAG--NTAGTCCTAAGATGT--GTCC-TAAGAATCCTCG-TAAGATTATATCTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTC
gi|1 : AG-CAGGG-TGGTATTAC--G-ACACATTTC-GATTA---AAAAAAAAAAACCTTGAA-TATCCCAG-CTTTC-G-AAG-CGTTGTCC-TA-TC-T-TAA-GA-TTTT--TTCTT--A-GG-AAT-ATATACTTA-ACTTTTAAGATCCCA-ACGGAC--TTAT-CT-TT-AGGC-GCCTTCTTTGGTTTG-GTTT--GGTTATTTTTGGATA-TCAGCCGTGTTTTCACTTCTCA-AATTGTCGGGTGGTA--GCAT-CA-CG--AT-----TTTT-CGCAAACTGG-GAA-TGTT-T-CGGCTTG-CTTTTGAT-GATG-ATCA--ATACATGTAACACTTTT-CG--AC-T----G-T-G-TGTTTT------GTCTTAAT-G-------------TAT-TG----------AAGCCATATA---A-------CTGTACAAGACAATTCCCTAATAC-AGTTTCAGGGTGCTAT-TAGATG-GAACACACATCAGAATAAAAA----------TC-TA--CA-G-AATGA-ACCAT-TA--GGA-AAATT-TCGCA-TGCTAATAATGT--GTGCAAGCTG-TTTTTTTGATTCACAG-CT-GA-AGCTT-TTGACATGCGGC-AGATTGATTGTGGGGGGGGGGGGGGGGGATGGAATAATGGGAT-AAGAGTCCGAATGAGA-GTT-TAATAAATGAGC-GC---TT--CTTGC-TAG--GGGC-GTT-GTTTGGATTTTGACCAT-G-AGC-AAGGAG-TTGGAC-ATT------------T--GTA-TACATGTCGG-CATGTATT----TTGACCCATTGTTTTG-AAA--TTTACAT--AA-CCCGTTTTC---CTTATAGAGA-GATTT--TGAAAGG----TTGGT--TGCGTCAAC-AATAGACCAAGT---GC-ACG-GGGTGTTTGGTT--GTGAAGGAC-TCGC-CACTA-TAGG-AC-AATAGGG-A----G--AGGG--GTCG-TCAAA-GT-GTATACAGAGATAG-----AG-AGAATTATTCAAAATATTTCTGAATTATT-GGCTAAAAGACTTAGTTGAACAT--GATTTT--AAGGA-AGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTATTACCACATAAAGCCGCAGAAT-T-TAATGTTTG-AT-TGAA-TAAAAA-AAAAAATCTTTAAGA--C-AAC-CA--TTTTAAAGACATCTTAATTTAA-GAT---AATTAACCTGAGGGA-C---CCTTTT-TATTTACATTTCCT-AGATGG-CATTCTTTAAG--ATAGTCCTAAGATGTTGGTTC-TAAGAATCCTCG-TAAGA-TATGTCTTTGGGTATATC-TAAGATGAGTTTCATAAGCA-TGCCT
gi|10 : CTTTC-T-AAG-C--TGTCCCTATTC-TGTAA-GA-TTTT--T-CTTTAA-GGAA-T-ATAT-CTTA-AC--TTAAGACCTCA---GAAC--TTGT-CC-TATGGAC-GCGT-CT---GTTTGTGTTT--GGCCA----TCAACG-TAAGCC-TG-TTTCACTTC--A-ATGCAT-----GGCA---CATGTA-CG--ATG----TTTTTCGTCA-CCGA-AAG-T-TTCC-CGGCT-GATTCCTTGT-GATG-TTCA--TTAGAA-------ATCT-CGCCGC-A----GCT-G-TGTGTC------TT----AT-G-------------TACA------------A-------TA---ACTGAGT-GT----------ATT-ATTAGTGC-ATTGC--AGATAT-ACATACAT----ACATATACCAAAGGAGGGGGGGGGCTCAATC-CACCCA-T-A-CGC-AC-AT-TA--GAATAAAAA-CCTCA-Tg
gi|10 : ACGCACATTAGAATAAAAACCT-----CATC-TA--CA-G-A-TGACAC-ATGTA--GGA-AAAActacagatgacacatgtaggaaaaaa
gi|11 : ctttctaagctgtccctattctgtaagatttttctttaaggaatatatcttaacttaagacctcagaacttgtcctatggacgcgtctgtttgtgtttggccatcaacgtaagcctgtttcacttcaatgcatggcacatgtacgatgtttttcgtcaccgaaagtttcccggctgattccttgtgatgttcattagaaatctcgccgcagctgtgtgtcttatgtacaataactgagtgtattattagtgcattgcagatatacatacatacatataccaaaggagggggggggctcaatccacccatAATGAATAATGGGAT-AAGAGTCCGAAT--GG-GTTAT----GATGAGC-GCTTTTTTTCTCGTATAGTTGGTC-GTT-GTT--GATTT-GACCAT-G-AGCCAAGGAG-TTGGAC-ATTTGTTATCAA-TGT--GTA-TA-ATGTCCG-CATGTT-T----TTGA-C--TTGTTTTG-AAA--TTTCCA---AA-TCC----TC---CTTAT-GAGAAGATTTGAAGAC--G----TTGATCTTG-GTGAACAA-TAGACCAAGT---GC-AAC-GGGTGTTT-GTT--GTGAA-GACGTCGTTCACTA-TA-G-ACGAATAGGA-G----A--A--G--GTAT-TCAAA--T-GAAAATAACGAAAG-----G--AAAAa
gi|12 : aTGCAGGC-ATGC-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TGT-CCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-AC-TTTAAGACCCCA-ACGGAC--TTGT-CG-TA-GGAC-GCGT-CTTTGG--TG----T--GGTT-----TGGATA-TCAGCA-TG-TTTCACTTC--A-AATCTT-----GGTA--GCAT-CA-CGAAATCACGATTTTTCGCCA-CTGG-AAG-T-TT-T-CGgga
gi|13 : AT-TGTAATGTTTG-ATGTGAA-T---AAACAAAAATC-TTAAGAAAC-AA--CAGATCCT-AGGACCTCTTAATTTAA-GATA--A--TCG-CTT---GC-T---CC-TTTGAATTTACA--TCCTAAGA
gi|14 : aagagagaagagagaaggcttagctatatactcaattaacctaccTC-TTAAGA--C-AG--CA--TTT--AAGACATCTAAATTTAA-AAT---A--TAA-CTGA--GA-T---TC-TTTTATTTTACA--TCCTAAGAT-G-CAT--CTTAGG--ATAGTCCTAAGATGT--GTCT-TAAGAATCCTCG-TAAGA-TATATCTTATGGTATATCTT-------------TAAGCA-TGCag
gi|15 : GCAGGC-GTGC-TTATGAAACTATCTT-AAAATATACCCT--AAGATCTAT--CTTAC-GAGGATTC---TTAG--G-AC-TAT--C-T--TA---AG----------GTT-GC-T---CCA-TCCTT--G-ATG-C--T
gi|15 : caCTTAAGATA---GTCC-TAAGAATCCTCG-TAAGAT-AGATCTTAGGGTATATTTTAAGAT-AGTTTCATAAGCA-CGCCTtttatggttaaatccatgtgatttttgtttaaaat
gi|16 : cagcCA------TATTAACAAATAA---C-CTACAT-TGTAATGTTTG-AT-TGAAAT---AA-CAAAAATC-TTAAGA--C-AA--CA--GCTG-AAGACACTTGAATTTAA-GAT---A--TCG-CT-----A-C---CCTTTT-AATTTA-A--TCCTAAGAT-G-CAT--gttgctccatccttgatgcttttatggttaaatccatgtgatttttgtttaaaat
gi|17 : ------TATTACCACATAA---TGCAAA-T-T-TAATGTTTG-AT-TGAA-T---AA-CAAAAATC-TTAAGA--C-AA--CA---TTT-AAGAGATCTTAATTTAA-GAT---A--TA
gi|18 : ttttaagaagagagagagagagagattaagCAGGC-ATGC-TTATGAAGATA-CTT-GAGAT------A--AGAATATAT--CTTTA-CCAGG-TC---T-ACT-G-ACACAT--C-G--TA---AA----------CTT-AATT---CCAGTCTTTC-G-AAG-C--TA--CCTA-TC---TAA-GA-Tatga
gi|2 : GCAGGCCATG--TTATGAAGATAT-TT-AAGAT------T--A-GATATATTTCTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TA---A-----------CTT-A--T---CCAAGCTTTC-G-AAG-C--TGTCC-TA-TC-T-TAG-AA-GTTT--T-TTT--A-GG-A-T-ATATTCTTA-ACTTT-AAGATCCCA-ACGGACCTTTGT-CT-TA-G-AC-GCGT-CTTTG------GTTT--GGTT-----TGGATA-TCAGCC-TG-TTTCACTTCT-A-AATCGT-----GGTA--GCAT-CA-CG--A------TTTTTCGCCA-CTGG-AAG-T-TT-T-CTGCT-G-TTTTTGAT-GATGTTTTA--TTACAT-------TTCT-CG--AC-A----G-T-G-TGTGTC------GT----AT-GTTATTTGAAC---TATATG----------A-------TATATA-------AG----------ATT-CCTAATAC-AGCAT--AGGTTC--TATAGATG-GAACAC-CATCAGAAT--AAAA-------AATCTTA--CA-G-A-TAA-AC-AT-TA--GGA-AAAATGTTTCA-TGCCATTAATGA--G--CAAGCTA-TTATT--
gi|2 : tagaccaGGGGGGGGCAATGACTAATAGGAT-AAGAGTT---AT--GA-ATT----------AGC-GCTGTTC--TTCGC-TAGT-GGTC-GTA-TTTTGGATTTTGACCATCA-AGC-AAGGAG-TTGGAC-ATTTGTTTCAAA-TGT--GTA-TACATATCGG-CATGTA-T----TTTG-ACATTGTTTTGAAAA--TTTAAAT--AA-CCCG--TTC---CT--TAGAGA--------------------TGGT--TGCGTC-AC-AATAGACAAGGT---GC-ACG-GGGTGTTT-GTT--GTGAA-GAC-TCGCTCACTA-TA-G-AC-AATAGGG-AACACA--G--G--GTCG-TCAAACGTGGAATACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAGAGAGAG-----A--AAAAT-ATTC-AAATA--TCT--ATTATT-GC-TAAAGGACTT-ATTGAACAT--GATTTT--ttgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|2 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagTAAGA--C-AAAACA--TTT--AAGACATCTTAATTTAACGATCACA--AAG-GTGA--GAGCGCGCT-TTT-ATTTTACA--TCCTATAAT-G-GAT--CTTttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctctaagacaaaacatttaagacatcttaatttaacgatcacaaaggtgagagcgcgcttttattttacatcctataatggatctt
gi|20 : tagaccagcaggccatgttatgaagatatttaagattagatatatttcttagcagggtcttacgacacatcgtaacttatccaagctttcgaagctgtcctatcttagaagtttttttaggatatattcttaactttaagatcccaacggacctttgtcttagacgcgtctttggtttggtttggatatcagcctgtttcacttctaaatcgtggtagcatcacgatttttcgccactggaagttttctgctgtttttgatgatgttttattacatttctcgacagtgtgtgtcgtatgttatttgaactatatgatatataagattcctaatacagcataggttctatagatggaacaccatcagaataaaaaatcttacagataaacattaggaaaaatgtttcatgccattaatgagcaagctattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggcaatgactaataggataagagttatgaattagcgctgttcttcgctagtggtcgtattttggattttgaccatcaagcaaggagttggacatttgtttcaaatgtgtatacatatcggcatgtattttgacattgttttgaaaatttaaataacccgttccttagagatggttgcgtcacaatagacaaggtgcacggggtgtttgttgtgaagactcgctcactatagacaatagggaacacagggtcgtcaaacgtggaatacattgtatatacacatggcactataataaattattacttacttactttacttacagagataaagagagagaaaaatattcaaatatctattattgctaaaggacttattgaacatgattttttattagaactaggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggacatgaagagatgagattaattattaccaaagctacacattctgcacattcatgatcttcacacatatagacctccacagtgcctcACTA-TA-G-AC-AATAGGG-A----G--AG-G--GTTG-TCAAA-AT-GAATACAAAGATAGAGAGAA--AAAATTATTC-AAATA-TTCT--A
gi|21 : AAATTGAGCAAGT---GCGACG-GGGTGTTT-GTT--GTGAA-GAC-TCGCTCGATACTA-G-GA-AAT-GGG-A----T--A--G--G
gi|22 : ATCCTCG-TAAGAT-ATATGTTAGGGTATATCTTAAGAT-AGTTTCATAAGCA-TGCCTgtat
gi|23 : GA---GA---TTGGT--TG-GTCAACAA-TAAACCAAGT---GC-ATG-GGGTGTTT-GTT--GTGAA-Ggct
gi|24 : gaGGTATATCT-AAGAT-AGTTTCATAAGCATTGCCT
gi|3 : TGCAG-C-ATGC-TTATGAAGATGTCTT-AAGAT----------AGATATAT--CTTGG-C-GTA-TC---TTAC--G-A-ATAT--C-G--TA---AA----------CTT-A------TCAGT-TTTC-G-AAG----TGTTCCTA-TC-T-TAA-GA-TTTT----CTT--A-GG-A-T-ACTT-CTTA-ACTCTTAAGACCCCA-ACGGA---TTGT-CT-TA-AGAC-GCGT-CTTTGGTTTG-TTTTTGGGTT-----TGGATA-TCAGCC-TGTTTTCACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTTTTCGCCA-CTGG-AAG-T-TT-TTCGGCT-G-TTTTTGGCAGATG-TTCA--TTACAT-------T-CT-AG--AC-A----G-T-G----G--------GT----AT-A-------------TACATG----------A-------TA---A-------A-----------ATTCC-TAACACGACTAT--AGGTCCTATATAGATG-GAACACA-ATTAGAATAAAAAA-------AATC-TA--CA-G-A-TGA-AC-AT-TG--G---AAAAT-TTTCACTGCCATTAATGT--G--CAAG-TG-TTTTT--GATTCACAG-CT-GA-GGTTTATTGACA-G-GAC-AGATTA--------GAGGGGAGGGGGCAAATGAATAATGGGAT-AAGAGTCCGAAT----------------TGAG--GTTATTT--CTCGC-TAGT-GGGC-GTTCGTTTGGATTTTGACAAT-G-AGC-AAGGAG-TTGGAC-ATTTTGTTTCAA-TAT--GTA-TACATATCGG-CATGTA-T----TTGA-GCATTGTTTTG-AAA--TTTATAT--AACCCCG--TTTTCACTTACAG-GA-GATTGATTGA---G----TTGGT--TG-GTCAACAAATAGACCAAGT---GC-ACG-GG-----------------------------TTA-TA-G-AC-AATA-GG-A----G--A--G--GTCGTTCCAA-GT-GGAGATAGAGAGAG-----A--AGAATTATTC--AATA-TTCT---TTATT-G--TAAAAGAC-T-ATTGAACATTGGATTTC--AAGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACACACA------TACTG--ACATAA---CGCAAAATAT-TAATGTTTGAAT-TGAA-T---AA-CAAAAAAT-TTTAGA--C--A--CA--TTTT-AAGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-ATTTTACA--TCCTAAGAT-G-CAT--TTTAAG--CTAGTCCTAAGATGT--GTCC-TAAGAATCCTCGCTAAGATTATATCTTAGGATATATCTTAAGAT-AGTTTCATAAG-A-TGCCTC
gi|4 : ATATAT--CTTAG-CAGGG-TC---TTAC--G-ACACAT--C-G--TATTAAA----------CTT-AA-T---CCA-TCTTTC-G-AAG-C--TA-CCCTA-TC-T-TAA--A-TTTTATT-CTT--A-GG-A-TTATAT--TTA-ACTTTAAGAACCCCA-ACGGAC--GTGT-CT--A-GGACCGCGT-CTGTG-TTTG-GTTTT-GGTT-----TGGATA-TCAGCC-TGTTT-CACTTCC-ATAATCGTC----GGTA--GCAT-CA-CG--AT-----TATTTCGCCA-CTGG-AAGGT-TT-T-CG-CT-G-TTTTTGG---ATG-AGCA--TAACAT-------TTTTTCG--AC-A----G-T-GGTGTGTCAACTGTGT----GT-G-------------TCTATGTATTGAACATA-------TA---ATGTATATAT----------ATTCCCTAATAC-AGTAT--AGGTGC--TATA-ATG-GAACACACATCGGAATAAAAAA-------A-TA-TA--CATGCA-TGA-AA-CT-TA--GGA-AAAAT-TTCCA-TGCCAAT--------------------TTT--GATTCACAG-CTTGA-AGTTT-TTGACATG-GGC-AGATTA--------GGGGTGGAGGGG---ATGAATAAT-GGATAAAGAGTCCGAAT--GAGGTT-TATA-AATGAGC-GCTTTTT-----GC-TAGT--GTC-GTT-GTTTGGATTTT-ACCAT-G-AG--AAGAAG-TTGGAC-A-----------------GTA-TACATGTC-G-CATGTA-T----TTTG-ACA-TGTTTTG-AAAATTTTACATAAAA-CCCG--TTC---CTTATAGAGA-GATTGAAAGA---G----TTGGT--TG-GTCAACAATGAGACC-AGT---GC-AC--GGGTGTTT-GTT--G-GAA-GGA-CCGCTCAATA-TA-GAAC-AATAGGGAA----G--A--G--GTCG-TCAAA-GT-GAATACAGAGATAG-----ATGAGAATTA-TC-AAATA-TTCT--ATTATTCG--CAAAAGAC-A-GTTGAACA----ATTTTAAAAGAG-AGAAAGAg
gi|4 : TACCACATAAA--CGCAAA-T-T-TAATGTTTG-A---GAA-T---AA-CAAAAATC-TTAAGA--CAAA--CA---TTT-ATGACATCTTAATTTAA-GAT---A--TAA-CTGA--GA-C---CC-TTT-TATTTACA--TCCTAA-AT-GACAT--CTTAAGATTTAGTCCTAAGATAT--GTCCTTAAAAAgagagagaattaattataccacataaacgcaaatttaatgtttgagaataacaaaaatcttaagacaaacatttatgacatcttaatttaagatataactgagacccttttatttacatcctaaatgacatcttaagatttagtcctaagatatgtccttaaaaa
gi|5 : atatatcttagcagggtcttacgacacatcgtattaaacttaatccatctttcgaagctaccctatcttaaattttattcttaggattatatttaactttaagaaccccaacggacgtgtctaggaccgcgtctgtgtttggttttggtttggatatcagcctgtttcacttccataatcgtcggtagcatcacgattatttcgccactggaaggttttcgctgtttttggatgagcataacattttttcgacagtggtgtgtcaactgtgtgtgtctatgtattgaacatataatgtatatatattccctaatacagtataggtgctataatggaacacacatcggaataaaaaaatatacatgcatgaaacttaggaaaaatttccatgccaattttgattcacagcttgaagtttttgacatgggcagattaggggtggaggggatgaataatggataaagagtccgaatgaggtttataaatgagcgctttttgctagtgtcgttgtttggattttaccatgagaagaagttggacagtatacatgtcgcatgtattttgacatgttttgaaaattttacataaaacccgttccttatagagagattgaaagagttggttggtcaacaatgagaccagtgcacgggtgtttgttggaaggaccgctcaatatagaacaatagggaagaggtcgtcaaagtgaatacagagatagatgagaattatcaaatattctattattcgcaaaagacagttgaacaattttaaaagagagaaagagagagagaattaatta-TTTT--T-CTT--A-GG-A-T-AAAT-CTTA-ACTTT-AAGACTTCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGCTTTG-GTTT--GGTT-----TGGATA-TCAGCT-TG-TTTCACTTT--A-AATCAT-----GGTA--GCAT-TG-CG--AT-----TTTTT-GCCA-CAGG-AAG-T-TT-C-CAGCTCT-TTTTTGGT-GATG-TTCA--TTACAT-------TTCT-TG--AC-A----G-T-G-TGTCTC------TT----AT-G-------------TAT-TG----------A-------
gi|5 : TTCCCTAATAC-AGTAT--AGGTGC--TATAGATG-GAACCCACATCAGAAactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|5 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcAGT--GA-GTT-TTA--AATGAGCCGCTTGTT--CTCGC-TA-T-GGTCCGTA-GT---GGTTTTGACCAT-GCAGC-AAGGAGATTGGACCAT--GTTTTCAAATGTCAGTACTACATGACGGACATGCA-TATTTTTGA-TCATTG-TTTG-A------TAGAT--G---------------TTACACAAA-AGTGTAATGA---AAATCCTTGT--T---CCTGTATATAGA--AAGTATCGA-ACGCGGGTTTTT-GTTCCGTGAA-GAC-TC-CTCACTA-TA-G-AC-AAAAGGG-G----GCAA--GGTGTCG-TCAAA-Gaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagttttaaatgagccgcttgttctcgctatggtccgtagtggttttgaccatgcagcaaggagattggaccatgttttcaaatgtcagtactacatgacggacatgcatatttttgatcattgtttgatagatgttacacaaaagtgtaatgaaaatccttgttcctgtatatagaaagtatcgaacgcgggtttttgttccgtgaagactcctcactatagacaaaagggggcaaggtgtcgtcaaag
gi|6 : tttttcttaggataaatcttaactttaagacttcaacggacttgtcttaggacgcgtctttgctttggtttggtttggatatcagcttgtttcactttaaatcatggtagcattgcgattttttgccacaggaagtttccagctcttttttggtgatgttcattacatttcttgacagtgtgtctcttatgtattgaactatataattgaatgtattattagtgttgcagatacatatatgcccacaagtgaaggggaactcaatgatttaattgacttttacgaaagggcaagcttccctaatacagtataggtgctatagatggaacccacatcagaaaataattatacgggggtggggtggtggtagtggtggtgaatnnnnnnnnnnnnnnnnnnnnnnnnnaGCAGGC-ATGT-TTATGAAGATATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGG-TC---TTAC--G-ACTCAT--C-G--TA---AA----------CTT-AA-T---CAAGTCTTTC-G-AAG-C--TGTAC-TA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-A-T-ATAT-CTTA-ACTTTTAAGACCCCA-ACGGAC--TTGA-CT-TA-AGAC-GCGT-CTTTGGTTTG-G-----------------ATA-TCAGCC-TGTTT-CACTTC--A-AATCGT-----TGTAAGGCAT-CAACG--AT-----TTT--CGCCA-CTGG-A------T-T-C--------TTTCGGT-GATG-TTCA--TTACAT-------TTCT-TG--ACTA----G-TTG-TTTGTCTTTT--GT----ATTGAAC----------TATATG----------A-------TA---T-------ATG---------ATTCCCTAATAC-AGTAT--AGGTGC--TATAGATG-AGAAACACATCAGAATAAAAAA-------A-TC-TA--C--T-A-TGA-AC-AT-TA--GGA-ATAAT-TTTCA-TGCAATTAATGT--G--CAAGCTG-TTTTT--GATTCCCAT-CT-GA-AGTTT-TTGAAATG-AAC-AGATTA--------GAGGGGGGGGGGGCAATGAATAATGGGAT-AAGA
gi|7 : AT------G--AACATATAT--CTT-G-CAGGG-TC---TTAC--GGACACAT--C-GG-TA---AA----------CGT-AA-T---CCAGTCTTTCCGCAAG-A--TGTCC-TA-TC-T-TAA--A-TTTT--T-CTT--ACGG-A-T-ATAC-CTTATACTTATAAGATCTCA-A-GGAC--TTGTTCTGTA-GGAC-GCGC--------------TT--GGTT-----GGCATAATCAGCC--GTTT-CACTTC--A-AATCGT-----GGTA--GCAT-CA-CG--AT-----TTGTCC--CA-CTGG-A---T-TT-T-CCGCA-G-TTTTTGGT-GATG-TTCA--TAACAT-------TTCT-CG--AT-A----G-T-G-TGTGTC------TT----AT-GTAATTGAACTATATATATT----------A-------TG---A-------AG----------ATTCCCTAATAC-AGTAT--AGGT-C--TATAGATGCGAACACACATCAGAATAAAACA-------ATTT-CT--CA-G-A-TGA-AC-AT-TAGCGAA-AAAAT-TTTCA-TGCCAATAATGTGGG--CAAGCTGTTTTTT--GATTCACAATCT-GACAGTTT-TTGACATG-GACTAGATt
gi|8 : catgcctttGCAGGC-ATGC-TTATGAAGGTATCTT-AAGAT------T--AAGATATAT--CTTAG-CAGGA-TC---TTAC--G-ACACAT--C-G--TA---AA----------CTT-AA-T---CCAGTCTTTC-G-AAG-C--TAT-CCTA-TC-T-TAA-GA-TTTT--T-CTT--A-GG-T-T-ATAT-CTTA-AC-TTTAAGACCTCA-ACGGAC--TTGT-CT-TA-GGAC-GCGT-CTTTGGTTTG-GC-----------------TA-TCAGCC-TG-TTTCACTTC--A-AATCAT-----G-----GCAT-TA-CG--A------TTTTTCGCCA-TTTG-ACG-T-TT-T-CGACT-A-TTCTTGGT-GATG-TTCA--TTAC---------TACT-CA--AC-AGTGTG-T-G-TGTGTC------TT----AT-G-------------TAC-TG----------AG------T------------GT----------ATT-ACTAGTGC-GTTAC--AGATAC-ATACACAT
gi|8 : a---A-------AG----------ATTTCCTAATAC-AG--T--AGGTAC--TATAGATA-GAACCCACAatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcaagatttcctaatacagtaggtactatagatagaacccaca
gi|9 : agcaggcatgcttatgaaggtatcttaagattaagatatatcttagcaggatcttacgacacatcgtaaacttaatccagtctttcgaagctatcctatcttaagatttttcttaggttatatcttaactttaagacctcaacggacttgtcttaggacgcgtctttggtttggctatcagcctgtttcacttcaaatcatggcattacgatttttcgccatttgacgttttcgactattcttggtgatgttcattactactcaacagtgtgtgtgtgtcttatgtactgagtgtattactagtgcgttacagatacatacacatatatatggctacaaatgaaggggagctcaatgaaacatgaaaaaagagtggcttttactaagtagcCAGGG-CTGCCTTAATAAGATATTTTCAAGAT------TTAAGGATATAT--CTTAGTCAGGA-TC---T-ACAAG-ACATAT--CAG--TA---AA----------CTT-AA-A---TCAGTCTTTC-G-AAGGC--TATCCTTC-TCGT-TAAAGAGTTTT--T-CTT--A-GG-A-TAATAT-CTTA-ACTTTAAAAACCTCAGACGGAC--TTGT-CT-TA-GGAC-GCGT-CTT--GTTTG-GTTT--GGTT-----TGGATA-TCAG-C-TGTTTTCACTTTTAA-AGTCAT-----GGT---GCAT-TA-CG--AT-----TTTTTTGGCA-CTGGAAAG-A-TT-T-CGCTC-T-TTTTTGGT-GATG-TTCAATTTACAT-------TTCT-CG--AC------G-T-ATTGTCTC------TT----AT-G-------------TAT-TG----------A--------A---C-------AT----------ATAGCC-ATTGT-AATTTG-AGGTGT-ATTTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TACGTAAAACATAAAGGAGGGAAATTGACGATGAAGAATCATTATCATTAATTGTTAATGGAAGCATTGTTTGTGATT