lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 33 222 1 2 11 55555555555555555555555 11111 11111 000000000000000000000000000000000000000000000000000000 1 2 33 333 1 222222222 22 1111111 11111 11111111 1111111 33333333333333333333333333 333333 444444444444444 777777777777777777777777777 1
lowQualScore : 5555 55 3 3 333 0 3 4 3 1 00 7777 3 5 33333333333333333333333 66666 11111 444444444444444444444444444444444444444444444444444444 4 4 4 7 4 8 6 0 00 222 66 4 1 6 7 5 888888888 8 3 88 4 9 6666666 4 0 33333 99999999 4 4444444 6 33333333333333333333333333 8 66 1 1 55 222222 999999999999999 3 6 444444444444444444444444444 7 0
lowQualScore : .... .. . . ... . . . . . .. .... . . ....................... ..... ..... ...................................................... . . . . . . . . .. ... .. . . . . . ......... . . .. . . ....... . . ..... ........ . ....... . .......................... . .. . . .. ...... ............... . . ........................... . .
lowQualScore : 5555 55 6 6 222 4 6 5 6 8 00 7777 5 0 00000000000000000000000 55555 11111 444444444444444444444444444444444444444444444444444444 4 4 4 8 4 9 4 7 99 111 11 3 4 7 2 7 333333333 1 1 00 4 4 6666666 4 1 00000 11111111 4 4444444 4 22222222222222222222222222 9 11 7 9 55 555555 999999999999999 6 7 000000000000000000000000000 2 8
consensus : CTCAGAGG----CGTAGCAAC-G-A-AA--AAAATATT-GGTAC-TGC--TCTGAAGCG----GAAGTGCACCGAAGGT--GG-------------CATTTTTGCT-NGGGGGG-----GGGGGT-T---A-AGGCT-TCCCCCAGAA--------A-A--------A----------AT-TGAA-GCAAA-TCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC-N-TA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAAT-TGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCAT-------TTATTTTCTT--------------TATT-G-TTTTT-AA--CTTAAACTTGCT--G--AAA-TTATTGGTACCGTTTTCT-GTACCT-TGG-AAAATTATTGGTACGA-C--A--AGC-CG-TAC--AN--CGTACCGCTTGCTACGCCAT
Reference ( gi|3 ) : CTCAGAGG----CGTAGCAA--G-A-AA--TAAATATT-G-TAC-T-C--TCTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACT-TGGGGGG-----GGGGGTAT---ATAGGCTGTCCCCCAGAA--------G-A--------A----------AT-TGAA-GCAAA-TC-G-TGCATGTCTGGGGCCATTTTCAGAAC-T-TA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAAT-TGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCAT-------TTATTTTCTT--------------TATT-G-TTTTT-AA--CTTAAGCTTGCT--G--A---TTATTAGTA-GGTTTTTTAGTA-AT-TGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTAC--ACA-TGTACCGCTTGCAAGGCCAT
gi|4 : CTCAGAGG----CGTAGCAA--G-A-AA--TAAATATT-G-TAC-T-C--TCTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACT-TGGGGGG-----GGGGGTAT---ATAGGCTGTCCCCCAGAA--------G-A--------A----------AT-TGAA-GCAAA-TC-G-TGCATGTCTGGGGCCATTTTCAGAAC-T-TA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAAT-TGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCAT-------TTATTTTCTT--------------TATT-G-TTTTT-AA--CTTAAGCTTGCT--G--A---TTATTAGTA-GGTTTTTTAGTA-AT-TGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTAC--ACA-TGTACCGCTTGCAAGGCCAT
gi|6 : CTCAGAGAGCGCCGTAGCAACGA-A-AA--GAAATATT-G-TAC-T-CCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CT-TGGGGGG-----GGGGTCAT---ATAGCATCTCCCCCAGAA--------ATC--------A----------AT-TGAA-GCAAA-TC-C-TGCAT-TCT-GGGCC-TTTTCAGAACATATA--ATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACA-TAAT-T-TTT---------TCATTC-------TA--------TAA-GCAT-------TTA-TTTCTT--------------TA-T-G-TGTTTAAA--CTTAAGC-TGCT--G--AAATTTATTAGTACCGTTTCATACC---T-TGGAAAAATTAT--GTACGACC--AATAGC-CGTTAC--AAC-TGTACCGCCTGCAA
gi|5 : CTCAGAGAGCGCCGTAGCAACGA-A-AA--GAAATATT-G-TAC-T-CCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CT-TGGGGGG-----GGGGTCAT---ATAGCATCTCCCCCAGAA--------ATC--------A----------AT-TGAA-GCAAA-TC-C-TGCAT-TCT-GGGCC-TTTTCAGAACATATA--ATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACA-TAAT-T-TTT---------TCATTC-------TA--------TAA-GCAT-------TTA-TTTCTT--------------TA-T-G-TGTTTAAA--CTTAAGC-TGCT--G--AAATTTATTAGTACCGTTTCATACC---T-TGGAAAAATTAT--GTACGACC--AATAGC-CGTTAC--AAC-TGTACCGCCTGCAA
gi|7 : CAGAGG----CGTAGCAAC-G-A-AA---AAATATTAG-TAC-TGC--TTTGAAGCG----GAAGTG---------------------------CATTTTT------GGTAG-----GGGGGTTTCGGACATGCT--CCCCCGAAATTTTTTGAA-A--------A----------AT-TGAA-GCAAATTT-G-TGCAT-TCTGAAGCCA-TTTCAGAAC-A-TATCATGA-TAT----------CCTACA--T------------ATGCCATATAC----AT-TGGTACG-----G-T--TTTC----CGTACCT-----TGA-AAAA-------TTATTGGTTT--------------T---------TT-AA--CTAAAAATTGCT--GAAA---TTATTGGTACTGTTTTCT-GTACCT-TGG-AAAATTATTGGCACCA----A--AGC-CG-TAC--CAA-CGTACCGCCTGC
gi|10 : aCAGAGG----TGTAGCAAC-G-A-AA--ACAATGTT-G-TACGT-C--T-TGAAGCG----AAAGTGCA-CGTAGGTACGGAAGAAGAGAGACTCCTTTGTGCT-TAGGGGG-----GGGGGC--------GGGTGTCT----GAATTTTTTTTT-A--------A----------A--TGAACGCAAA-TCTGTTGC-TGTCTAGAGCC--TTTCAAAAC-A-TA--AC-A-TATtgcgc
gi|12 : AGAGG----CGCAGCAAC-G-ACAA--AAAATATT-GGTAC-TGC--TCTG-------------TGCATC----------------------------TTGCT-TGGGGAGTCTGAAGGGGT---------GCT---CCCCAAAA--------A-A--------ATATTTTAAAAAT-TGAA-GCAAA-TCTG-CGCAT-TCTGGAGCC-TTTTCAGAAC-A-TA--a
gi|11 : GAGG----TGTAGCAAC-G-A-AA--ACAATGTT-GGTAC-TGC--TTTGAAGCG----AAAGTGCACCTACGGT--G--------------CACTTTTGCTAGGGGGGG-----GGGGG---------GG--GTCT----GAATTTTTTT-T-A--------A----------AT-TGAA-GCAAA-TCTG-TGCAT-TCTAGAGCC--TTTCAGAAC-A-TA--taat
gi|16 : AGG----CGTAGCAAC-G-A-AA----AA-------------C--TCTTAAGCGTCCAAAAGTGCACCAAAGGT---G-------------CACTTTTGCT-AGGAGGcaattata
gi|1 : GG----TGTTGCAAC-G-A-AACATAAAC-TG-G-CAC-TGC--TCTGTAGCG----GAAGTACATCGAAGGT---G-------------CACTTTTGC--AGGGGGG-----GGGGGTGT---------------CCAGAA--------A-A--------A----------TT-TGGA---AAA-T--G-TGCAT-TCTGGAGCC-TTTTCAGAACATATA--ATGA-CAT
gi|14 : G----TGTAGCAA--CTA-AA--AAAATATT-GGTAC-TGC--TCTGAAGCG----GAAGTGCACCAAAGGT---G-------------CATTCTTGCT-AGGGGcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagatcatctaattcttatggagtttactttaattttttgtcattttcgtatactagtaaagcattcatttttttattagtttttaacttaaacttgctgaaacgtaccttggaaaattattggtacatgtacgtaccaaccgtatcgcttgcttcgccc
gi|2 : c----CATAGCAAC-G-A-AA-----ATATT-GGTAC-TGC--TCTGAAGCG----GAGGTGCACC---------------------------TTTGC----GGGGG-----GGGGAT---------GCT-TCCCCCAGAA--------A-AGTTTTGAAA----------ATATGAA-GCAAA-TCTG-TGCAT-TCAAGAGCC-TTTACCGAAC-A-TA---T-A-CATGTAAT--GATACC-C-----TACATATGCCAGTCA---TTAT-GTAAAACGTGCTT-----G-CTATTTTGAATCGTT--T-----TAA-GCAT-------TTACTTT--T--------------TATT-G-GTTAT-AA--CTTAAACTTGCT--GAAA---TTATTGGTACTGTTTTCT-GTACCT-CGG-AAATTTATTGGTtctagcaaaaaaatgaaacattgaagcaaatatg
gi|8 : -AATGTTAAGAT-CA--TCTA---ATTTTAGTGGCATTTACTTTGAT-TTTCTTTTTTTGG-TCATTTT----CGTA--T-----TAA-GCATTTTTGGATTGTTTTTTTTTTTTTTTTATTAATATT-GCTTTTT-AA--CTTAAACTTGTTAAA--A---TGACTGGTACGGTGTTCT-GTACCT-TGG-AAAATTATTGGTA------------C-CA--AC------TGTATCGCTTGCTACGCCtttttacttgttggaattattggtaccagtactgttttttctatcttggaaaattattggcac
gi|1 : gtttttttagccattgcacgtcaaaaT-CA--TCTA---ATTCTTATGGAGTTTACTTTAAT-T--TTTT-----G-TCATTTT----CGTA--TACTAGTAAAGCAT-------TCATTTT-TT--------------TATTAG-TTTTT-AA--CTTAAACTTGCT--G--A--------AAC-----------GTACCT-TGG-AAAATTATTGGT---A-C--A--TGTACG-TACCAAC--CGTATCGCTTGCtat
gi|9 : ggtgttgcaacgaaacataaactggcactgctctgtagcggaagtacatcgaaggtgcacttttgcagggggggggggtgtccagaaaaatttggaaaatgtgcattctggagccttttcagaacatataatgacatcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagaTAATGGAGTTTACTTTAA---GTTTTA-----G-TAATTTT----CGTA--T-----TAA-GCAT-------TTAATTT-TT--------------TATT-G-GTTTT-AAACCTT-ACCTTTCT--GAAA---TTATTGGTACGGTTTTCT-GTACCT-TGG-ACAATTATTGGTACAA-CCAA--GGC-CG-TAC--AAACCGTACCGCTTGCTACGCCttcgccc
gi|13 : ataataattataggtacaatgtgT-TGTTGTT-----GGTCATTTT----CGTT--T-----TAA-ACAT-------TTATTT--------------------------------------AAACTTACT--A--AAA-TTATTGGTA-CGGTGTTTCGTA-CCATGG-AAAATTATTGGTA------------C-CG--AC------CGTACCGCTTGCTACGCCca
gi|15 : aatttGCT--G--AAA-TTATTGGTA-CGGTTTTCCGTA-CT-AGG-AAAATTCTTGGT---A-C--A--A-C-C---AC--AGC-CGTACCGCTTTCTACGCCctac
gi|18 : T-TGG-AAAATTATTGGTAAGG-CCAA--AGC-----------A--ATACCGCTTGCTACGCCtatgc
gi|20 : ataccG-AAAATGATTGGTACGA-CAAA--AGC-CG-TACCAAC--TGTACCGCTcat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ACATGCTTTCATGGAACATTTTTCTAAAAATTGAAGCAGAATTGAGCATTCTGA
Unaligned ( gi|19 ): AATAATGGTACGGCCAAAACCGTACTAACCGTACCGCTGGCTACGCCCATG
Alignments
lowQualScore : 1111 44444444444444444444444 11111 999999999999999999999999999999999999999999999999999999999999 11 11 1 22222 111 1111111 111111 1111111 222222222222222222222 11111111 4444444444444444444444444444
lowQualScore : 4444 3 6 8 4 6 7777 2 1 66666666666666666666666 1 2 66666 222222222222222222222222222222222222222222222222222222222222 3 3 1 3 7 3 11 666 66 2 0 5 4 5 888 11111 6 1 111 88 4444444 8888 55 000000 4 3333333 333333333333333333333 3 55 7 55 0 0 6 77777777 22 6 2 5 3333333333333333333333333333
lowQualScore : .... . . . . . .... . . ....................... . . ..... ............................................................ . . . . . . .. ... .. . . . . . ... ..... . . ... .. ....... .... .. ...... . ....... ..................... . .. . .. . . . ........ .. . . . ............................
lowQualScore : 2222 3 7 8 6 7 1111 4 0 99999999999999999999999 0 2 88888 999999999999999999999999999999999999999999999999999999999999 3 3 7 3 3 8 44 555 55 5 0 7 9 0 888 88888 2 8 888 11 0000000 5555 55 888888 0 0000000 888888888888888888888 6 55 3 00 8 4 7 22222222 88 7 8 7 0000000000000000000000000000
consensus : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGGGT-TA--GGC--T-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-C---A--T-TAATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTGAAA-TTATTGGTACG------GTTTTCC-GTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-CC-GTACCGCTTGCTACGCCAT
Reference ( family-4713 ) : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCGAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGGGT-TA-AGGC--T-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--NTA--ATGAT-ATG-AATTTGAAACT-C---A--T-TAATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAACTTGCTGAAA-TTATTGGTACC------GTTTTCT-GTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-NC-GTACCGCTTGCTACGCCAT
gi|1 : GG----TGTTGCAACGA-AAC-ATAAACTGGCACTGCT-CTGTAGCG----GAAGTACATCGAAGGT---G-------------CACTTTTGC-AGGGGGG-----GGGGGT-----G---------TCCAGA-------A---------A-A--------A----------TT-TGGA---AAA--TG-TGCAT-TCTGGAGCC-TTTTCAGAACATATA--ATGAC-AT
gi|1 : T-C---A--TCTAATTCTTATGGAGTTTACTTTAATT--TTTT-----G-TCATTTT----CGTA--TACTAGTAAAGCATTC-------ATTTT-TTT--------------ATTAG-TTTTT-AA--CTTAAACTTGCTGAAA------------------------C-GTACCTTGG-AAAATTATTGGT---A-C--A--TGTACG-TA-CCAA-CC-GTATCGCTTGCTTCGCCcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagatcatctaattcttatggagtttactttaattttttgtcattttcgtatactagtaaagcattcatttttttattagtttttaacttaaacttgctgaaacgtaccttggaaaattattggtacatgtacgtaccaaccgtatcgcttgcttcgccc
gi|10 : ggtgttgcaacgaaacataaactggcactgctctgtagcggaagtacatcgaaggtgcacttttgcagggggggggggtgtccagaaaaatttggaaaatgtgcattctggagccttttcagaacatataatgacatcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagaCAGAGG----TGTAGCAACGA-AAA-CAATGTT-GTAC-GTC-TTGAAGCG----AAAGTGCA-CGTAGGTACGGAAGAAGAGAGACTCCTTTGTGCTTAGGGGG-----GGGGGC----GGGT--G-TCT----GA-------ATTTTTTTTTA-A--------A-------------TGAACGCAAATCTGTTGCTG-TCTAGAGCC--TTTCAAAAC--ATA--AC-AT-ATc
gi|11 : GAGG----TGTAGCAACGA-AAA-CAATGTTGGTACTGCT-TTGAAGCG----AAAGTGCACCTACGGT---G-------------CACTTTTGCTAGGGGGG-----GGGGG---G-GGGT--C-T------GA-------ATTTTTTT--T-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTAGAGCC--TTTCAGAAC--ATA--a
gi|12 : AGAGG----CGCAGCAACGACAAA-AAATATTGGTACTGCT-CTG-------------TGCATC----------------------------TTGCTTGGGGAGTCTGAAGGGGT------GC--T---CCCCAAA-------A---------A-A--------ATATTTTAAAAAT-TGAA-GCAAATCTG-CGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--caattata
gi|13 : TTGTTGTT-----GGTCATTTT----CGTT--T-----TAA-ACATTT-------ATTT--------------------------------------AAACTTACTAAAA-TTATTGGTACG------GTGTTTC-GTACCATGG-AAAATTATTGGTA------------C-CG-------A-CC-GTACCGCTTGCTACGCCtaat
gi|14 : aatttG----TGTAGCAACTA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT---G-------------CATTCTTGCTA------------GGGGT-CT-AG-----------CAAA-------A---------A-A--------ATGAAAC----AT-TGAA-GCAAATATG-ctac
gi|15 : cGCTGAAA-TTATTGGTACG------GTTTTCC-GTA-CTAGG-AAAATTCTTGGTACAA-C------------CA-C--AGCC-GTACCGCTTTCTACGCC
gi|16 : AGG----CGTAGCAACGA-AAA-A-------------CT-CTTAAGCGTCCAAAAGTGCACCAAAGGT---G-------------CACTTTTGCTAGGAGGtatgc
gi|17 : -------A---------A-A--------A----------AT-TGAA-GCAGAATTG-AGCAT-TCTG
gi|18 : acatgctttcatggaacatttttctTACCTTGG-AAAATTATTGGTA-------A--GGC-C---A-A--A-GCAATACCGCTTGCTACGCCa
gi|19 : aTAATGGTACGG-CCAA--AAC-CG-TA-CTAA-CC-GTACCGCTGGCTACGCCcat
gi|2 : aa----CATAGCAACGA-AAA----TATTGGTACTGCT-CTGAAGCG----GAGGTGCACC---------------------------TTTGC---GGGGG-----GGGGAT------GC--T-TCCCCCAGA-------A---------A-AGTTTTGAAA----------ATATGAA-GCAAATCTG-TGCAT-TCAAGAGCC-TTTACCGAAC--ATA---T-AC-ATGTAAT--GATACC-CTACA--T---ATGCCAGTCA---TTATGTAAAACGTGCTT-----G-CTATTTTGAATCGTT--T-----TAA-GCATTT-------ACTTT--TT--------------ATT-G-GTTAT-AA--CTTAAACTTGCTGAAA-TTATTGGTACT------GTTTTCT-GTACCTCGG-AAATTTATTGGTcatg
gi|2 : TTT--------------ATT-G-GTTTT------TTA--CTTGTTGGAA-TTATTGGTACCAGTACTGTTTTTT-CTATCTTGG-AAAATTATTGGCACtttttacttgttggaattattggtaccagtactgttttttctatcttggaaaattattggcac
gi|20 : catagcaacgaaaatattggtactgctctgaagcggaggtgcacctttgcgggggggggatgcttcccccagaaaagttttgaaaatatgaagcaaatctgtgcattcaagagcctttaccgaacatatacatgtaatgataccctacatatgccagtcattatgtaaaacgtgcttgctattttgaatcgttttaagcatttactttttattggttataacttaaacttgctgaaattattggtactgttttctgtacctcggaaaG-AAAATGATTGGTACGA-CAAA--AGC-CG-TA-CCAA-CT-GTACC----GCTACGCC
gi|3 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACTTGGGGGG-----GGGGGTATATAGGC--TGTCCCCCAGA-------A---------G-A--------A----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGAT-ATG-AATTTGAAACT-C---A--T-TAATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTG--A-TTATTAGTA-G------GTTTTTTAGTA-ATTGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTA-C--ACAT-GTACCGCTTGCAAGGCCATcat
gi|4 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACTTGGGGGG-----GGGGGTATATAGGC--TGTCCCCCAGA-------A---------G-A--------A----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGAT-ATG-AATTTGAAACT-C---A--T-TAATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTTT----CGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTG--A-TTATTAGTA-G------GTTTTTTAGTA-ATTGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTA-C--ACAT-GTACCGCTTGCAAGGCCAT
gi|5 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CTTGGGGGG-----GGGGTCATA-TAGCATC-TCCCCCAGA-------A---------ATC--------A----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAAC--ATATAATGATTATG-AATTTGAAACT-C---AGTC-TAATTC-AATGGAATTTACAT-AATT---TTT-------TCATTCT-------A--T------AA-GCATTT-------ATTT-CTTT--------------A-T-G-TGTTTAAA--CTTAAGC-TGCTGAAATTTATTAGTACC------GTTT--C-ATACCTTGGAAAAATTAT--GTACGACC--AATAGC-CGTTA-C--A-ACTGTACCGCCTGC
gi|6 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CTTGGGGGG-----GGGGTCATA-TAGCATC-TCCCCCAGA-------A---------ATC--------A----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAAC--ATATAATGATTATG-AATTTGAAACT-C---AGTC-TAATTC-AATGGAATTTACAT-AATT---TTT-------TCATTCT-------A--T------AA-GCATTT-------ATTT-CTTT--------------A-T-G-TGTTTAAA--CTTAAGC-TGCTGAAATTTATTAGTACC------GTTT--C-ATACCTTGGAAAAATTAT--GTACGACC--AATAGC-CGTTA-C--A-ACTGTACCGCCTGCaa
gi|7 : CAGAGG----CGTAGCAACGA-AAA-AA-TATTAGTACTGCT-TTGAAGCG----GAAGTGCA---------------------------TTTTTGGTAGGGGGGTTTC-GGACAT------GC--T-CCCCCGAAATTTTTTGA---------A-A--------A----------AT-TGAA-GCAAATTTG-TGCAT-TCTGAAGCC-ATTTCAGAAC--ATATCATGAT-AT----------CCTAC---A--T---------ATGCCATATAC----ATTGGTACG-----G-T--TTTC----CGTACCT-----TGA-AAAATT-------ATTGGTTTT-----------------------TT-AA--CTAAAAATTGCTGAAA-TTATTGGTACT------GTTTTCT-GTACCTTGG-AAAATTATTGGCACCA----A--AGC-CG-TACC--A-AC-GTACCGCCTGCTGCGCaa
gi|8 : a-AATGTTAAGAT-C---A--TCTAATTTTAGTGGCATTTACTTTGATTTTCTTTTTTTGG-TCATTTT----CGTA--T-----TAA-GCATTTTTGGATTGTTTTTTTTTTTTTTTTATTAATATT-GCTTTTT-AA--CTTAAACTTGTTAAAA-TGACTGGTACG------GTGTTCT-GTACCTTGG-AAAATTATTGGTAC---C--A---------------A-CT-GTATCGCTTGCTACGCC
gi|9 : gtttttttagccattgcacgtcaaaaTAATGGAGTTTACTTTAA--GTTTTA-----G-TAATTTT----CGTA--T-----TAA-GCATTT-------AATTT-TTT--------------ATT-G-GTTTT-AAACCTT-ACCTTTCTGAAA-TTATTGGTACG------GTTTTCT-GTACCTTGG-ACAATTATTGGTACAA-CCAA--GGC-CG-TA-CAAA-CC-GTACCGCTTGCTACGCCtat
Alignments
lowQualScore : 1111 44444444444444444444444 11111 888888888888888888888888888888888888888888888888888888888888888 11 11 1 2222 111 1111111 111111 1111111 22222222222222222222222222 11 1111111 44444444444444444444444
lowQualScore : 4444 3 6 8 4 6 7777 2 1 22222222222222222222222 1 2 66666 555555555555555555555555555555555555555555555555555555555555555 3 3 1 3 7 3 11 55 66 2 0 5 22 5 1111 888 6 1 111 88 4444444 8888 55 000000 4 3333333 33333333333333333333333333 22 1 0 6 2222222 333 2 5 33333333333333333333333 3 6
lowQualScore : .... . . . . . .... . . ....................... . . ..... ............................................................... . . . . . . .. .. .. . . . .. . .... ... . . ... .. ....... .... .. ...... . ....... .......................... .. . . . ....... ... . . ....................... . .
lowQualScore : 2222 3 7 8 6 7 1111 4 0 22222222222222222222222 0 2 88888 222222222222222222222222222222222222222222222222222222222222222 3 3 7 3 3 8 44 55 55 5 0 7 77 0 5555 888 2 8 888 11 0000000 5555 55 888888 0 0000000 11111111111111111111111111 33 8 4 7 1111111 666 8 7 11111111111111111111111 1 2
consensus : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCCGTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-C-CGTACCGCTTGCTACGCCAT
Reference ( family-4713 ) : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCCGTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-C-CGTACCGCTTGCTACGCCAT
gi|1 : GG----TGTTGCAACGA-AAC-ATAAACTGGCACTGCT-CTGTAGCG----GAAGTACATCGAAGGT---G-------------CACTTTTGC-AGGGGGG-----GGGG--GT-----G--------TCCAGA-------A---------A-A--------A----------TT-TGGA---AAA--TG-TGCAT-TCTGGAGCC-TTTTCAGAACATATA--ATGAC-AT
gi|1 : T-CA--TCTA---ATTCTTATGGAGTTTACTTTAATT--TTTT-----G-TCATTT----TCGTA--TACTAGTAAAGCATTC-------ATTTT-TTT--------------ATTAG-TTTTTAA--CTTAAACTTGCTGAAA------------------------CGTACCTTGG-AAAATTATTGGT---A-C--A--TGTACG-TA-CCAA-C-CGTATCGCTTGCTTCGCCcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagatcatctaattcttatggagtttactttaattttttgtcattttcgtatactagtaaagcattcatttttttattagtttttaacttaaacttgctgaaacgtaccttggaaaattattggtacatgtacgtaccaaccgtatcgcttgcttcgccc
gi|10 : ggtgttgcaacgaaacataaactggcactgctctgtagcggaagtacatcgaaggtgcacttttgcagggggggggggtgtccagaaaaatttggaaaatgtgcattctggagccttttcagaacatataatgacatcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagaCAGAGG----TGTAGCAACGA-AAA-CAATGTT-GTAC-GTC-TTGAAGCG----AAAGTGCA-CGTAGGTACGGAAGAAGAGAGACTCCTTTGTGCTTAGGGGG-----GGGG--G----CGG-GTG-TCT----GA-------ATTTTTTTTTA-A--------A-------------TGAACGCAAATCTGTTGCTG-TCTAGAGCC--TTTCAAAAC--ATA--AC-AT-ATc
gi|11 : GAGG----TGTAGCAACGA-AAA-CAATGTTGGTACTGCT-TTGAAGCG----AAAGTGCACCTACGGT---G-------------CACTTTTGCTAGGGGGG-----GGGG--G------G-GGG-TCT----GA-------ATTTTTTT--T-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTAGAGCC--TTTCAGAAC--ATA--a
gi|12 : AGAGG----CGCAGCAACGACAAA-AAATATTGGTACTGCT-CTG-------------TGCATC----------------------------TTGCTTGGGGAGTCTGAAGGG--GT-------GCT---CCCCAAA-------A---------A-A--------ATATTTTAAAAAT-TGAA-GCAAATCTG-CGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--caattata
gi|13 : TTGTTGTT-----GGTCATTT----TCGTT--T-----TAA-ACATTT-------ATTT-------------------------------------AAACTTACTAAAA-TTATTGGTAC--G----GTGTTTCGTACCATGG-AAAATTATTGGTA------------C-CG-------A-C-CGTACCGCTTGCTACGCCtaat
gi|14 : aatttG----TGTAGCAACTA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--G--------------CATTCTTGCTAGGGGT-------------C---TAG----------CAAA-------A---------A-A--------ATGAAAC----AT-TGAA-GCAAATATG-ctac
gi|15 : cGCTGAAA-TTATTGGTAC--G----GTTTTCCGTA-CTAGG-AAAATTCTTGGTACAA-C------------CA-C--AGC-CGTACCGCTTTCTACGCC
gi|16 : AGG----CGTAGCAACGA-AAA-A-------------CT-CTTAAGCGTCCAAAAGTGCACCAAAGGT---G-------------CACTTTTGCTAGGAGGtatgc
gi|17 : -------A---------A-A--------A----------AT-TGAA-GCAGAATTG-AGCAT-TCTG
gi|18 : acatgctttcatggaacatttttctTACCTTGG-AAAATTATTGGTA-------A--GGC-CA--A-A--G-C-AATACCGCTTGCTACGCCa
gi|19 : aTAATGGTACGG-CCAA--AAC-CG-TA-CTAA-C-CGTACCGCTGGCTACGCCcat
gi|2 : aa----CATAGCAACGA-AAA----TATTGGTACTGCT-CTGAAGCG----GAGGTGCACC---------------------------TTTGC---GGGGG-----GGGG--AT-------GCT-TCCCCCAGA-------A---------A-AGTTTTGAAA----------ATATGAA-GCAAATCTG-TGCAT-TCAAGAGCC-TTTACCGAAC--AT---AT-AC-ATGTAA--TGATACC-C-----TACATATGCCAGTCA---TTATGTAAAACGTGCTT-----G-CTATTTTGAATCGTT--T-----TAA-GCATTT-------ACTT--TTT--------------ATT-G-GTTATAA--CTTAAACTTGCTGAAA-TTATTGGTAC--T----GTTTTCTGTACCTCGG-AAATTTATTGGTcatg
gi|2 : TTT--------------ATT-G-GTTTT-----TTA--CTTGTTGGAA-TTATTGGTACCAGTACTGTTTTTTCTATCTTGG-AAAATTATTGGCACtttttacttgttggaattattggtaccagtactgttttttctatcttggaaaattattggcac
gi|20 : catagcaacgaaaatattggtactgctctgaagcggaggtgcacctttgcgggggggggatgcttcccccagaaaagttttgaaaatatgaagcaaatctgtgcattcaagagcctttaccgaacatatacatgtaatgataccctacatatgccagtcattatgtaaaacgtgcttgctattttgaatcgttttaagcatttactttttattggttataacttaaacttgctgaaattattggtactgttttctgtacctcggaaaG-AAAATGATTGGTACGA-CAAA--AGC-CG-TA-CCAA-C-TGTACC----GCTACGCC
gi|3 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACTTGGGGGG-----GGGG--GTATATAG-GCTGTCCCCCAGA-------A---------G-A--------A----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTG--A-TTATTAGTAG--G----TTTTTTAGTA-ATTGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTA-C--A-CATGTACCGCTTGCAAGGCCATcat
gi|4 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACTTGGGGGG-----GGGG--GTATATAG-GCTGTCCCCCAGA-------A---------G-A--------A----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTG--A-TTATTAGTAG--G----TTTTTTAGTA-ATTGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTA-C--A-CATGTACCGCTTGCAAGGCCAT
gi|5 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CTTGGGGGG-----GGGGTCATA--TAGCATC-TCCCCCAGA-------A---------ATC--------A----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAAC--ATATAATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACAT-AATT---TTT-------TCATTC----T---A--T------AA-GCATTT-------ATTT-CTTT--------------AT--G-TGTTTAAA-CTTAAGC-TGCTGAAATTTATTAGTAC--C----GTTT--CATACCTTGGAAAAATTAT--GTACGACC--AATAGC-CGTTA-CA-A-C-TGTACCGCCTGC
gi|6 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CTTGGGGGG-----GGGGTCATA--TAGCATC-TCCCCCAGA-------A---------ATC--------A----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAAC--ATATAATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACAT-AATT---TTT-------TCATTC----T---A--T------AA-GCATTT-------ATTT-CTTT--------------AT--G-TGTTTAAA-CTTAAGC-TGCTGAAATTTATTAGTAC--C----GTTT--CATACCTTGGAAAAATTAT--GTACGACC--AATAGC-CGTTA-CA-A-C-TGTACCGCCTGCaa
gi|7 : CAGAGG----CGTAGCAACGA-AAA-AA-TATTAGTACTGCT-TTGAAGCG----GAAGTGCA---------------------------TTTTTGGTAGGGGGGTTTC-GGAC--AT-------GCT-CCCCCGAAATTTTTTGA---------A-A--------A----------AT-TGAA-GCAAATTTG-TGCAT-TCTGAAGCC-ATTTCAGAAC--ATATCATGAT-AT----------CCTACA--T------------ATGCCATATAC----ATTGGTACG-----G-T--TTT----CCGTACCT-----TGA-AAAATT-------ATTGGTTTT-----------------------TTAA--CTAAAAATTGCTGAAA-TTATTGGTAC--T----GTTTTCTGTACCTTGG-AAAATTATTGGCACCA----A--AGC-CG-TACC--A-A-CGTACCGCCTGCTGCGCaa
gi|8 : a-AATGTTAAGAT-CA--TCTA---ATTTTAGTGGCATTTACTTTGATTTTCTTTTTTTGG-TCATTT----TCGTA--T-----TAA-GCATTTTTGGATTGTTTTTTTTTTTTTTTTATTAATATT-GCTTTTTAA--CTTAAACTTGTTAAAA-TGACTGGTAC--G----GTGTTCTGTACCTTGG-AAAATTATTGGTAC---C--A---------------A-C-TGTATCGCTTGCTACGCC
gi|9 : gtttttttagccattgcacgtcaaaaTAATGGAGTTTACTTTAA--GTTTTA-----G-TAATTT----TCGTA--T-----TAA-GCATTT-------AATTT-TTT--------------ATT-G-GTTTTAAACCTT-ACCTTTCTGAAA-TTATTGGTAC--G----GTTTTCTGTACCTTGG-ACAATTATTGGTACAA-CCAA--GGC-CG-TA-CAAA-C-CGTACCGCTTGCTACGCCtat
Alignments
lowQualScore : 1111 44444444444444444444444 11111 888888888888888888888888888888888888888888888888888888888888888 11 11 1 2222 111 1111111 111111 1111111 22222222222222222222222222 11 1111111 44444444444444444444444
lowQualScore : 4444 3 6 8 4 6 7777 2 1 22222222222222222222222 1 2 66666 555555555555555555555555555555555555555555555555555555555555555 3 3 1 3 7 3 11 55 66 2 0 5 22 5 1111 888 6 1 111 88 4444444 8888 55 000000 4 3333333 33333333333333333333333333 22 1 0 6 2222222 333 2 5 33333333333333333333333 3 6
lowQualScore : .... . . . . . .... . . ....................... . . ..... ............................................................... . . . . . . .. .. .. . . . .. . .... ... . . ... .. ....... .... .. ...... . ....... .......................... .. . . . ....... ... . . ....................... . .
lowQualScore : 2222 3 7 8 6 7 1111 4 0 22222222222222222222222 0 2 88888 222222222222222222222222222222222222222222222222222222222222222 3 3 7 3 3 8 44 55 55 5 0 7 77 0 5555 888 2 8 888 11 0000000 5555 55 888888 0 0000000 11111111111111111111111111 33 8 4 7 1111111 666 8 7 11111111111111111111111 1 2
consensus : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCCGTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-C-CGTACCGCTTGCTACGCCAT
Reference ( family-4713 ) : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCCGTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-C-CGTACCGCTTGCTACGCCAT
gi|1 : GG----TGTTGCAACGA-AAC-ATAAACTGGCACTGCT-CTGTAGCG----GAAGTACATCGAAGGT---G-------------CACTTTTGC-AGGGGGG-----GGGG--GT-----G--------TCCAGA-------A---------A-A--------A----------TT-TGGA---AAA--TG-TGCAT-TCTGGAGCC-TTTTCAGAACATATA--ATGAC-AT
gi|1 : T-CA--TCTA---ATTCTTATGGAGTTTACTTTAATT--TTTT-----G-TCATTT----TCGTA--TACTAGTAAAGCATTC-------ATTTT-TTT--------------ATTAG-TTTTTAA--CTTAAACTTGCTGAAA------------------------CGTACCTTGG-AAAATTATTGGT---A-C--A--TGTACG-TA-CCAA-C-CGTATCGCTTGCTTCGCCcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagatcatctaattcttatggagtttactttaattttttgtcattttcgtatactagtaaagcattcatttttttattagtttttaacttaaacttgctgaaacgtaccttggaaaattattggtacatgtacgtaccaaccgtatcgcttgcttcgccc
gi|10 : ggtgttgcaacgaaacataaactggcactgctctgtagcggaagtacatcgaaggtgcacttttgcagggggggggggtgtccagaaaaatttggaaaatgtgcattctggagccttttcagaacatataatgacatcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagaCAGAGG----TGTAGCAACGA-AAA-CAATGTT-GTAC-GTC-TTGAAGCG----AAAGTGCA-CGTAGGTACGGAAGAAGAGAGACTCCTTTGTGCTTAGGGGG-----GGGG--G----CGG-GTG-TCT----GA-------ATTTTTTTTTA-A--------A-------------TGAACGCAAATCTGTTGCTG-TCTAGAGCC--TTTCAAAAC--ATA--AC-AT-ATc
gi|11 : GAGG----TGTAGCAACGA-AAA-CAATGTTGGTACTGCT-TTGAAGCG----AAAGTGCACCTACGGT---G-------------CACTTTTGCTAGGGGGG-----GGGG--G------G-GGG-TCT----GA-------ATTTTTTT--T-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTAGAGCC--TTTCAGAAC--ATA--a
gi|12 : AGAGG----CGCAGCAACGACAAA-AAATATTGGTACTGCT-CTG-------------TGCATC----------------------------TTGCTTGGGGAGTCTGAAGGG--GT-------GCT---CCCCAAA-------A---------A-A--------ATATTTTAAAAAT-TGAA-GCAAATCTG-CGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--caattata
gi|13 : TTGTTGTT-----GGTCATTT----TCGTT--T-----TAA-ACATTT-------ATTT-------------------------------------AAACTTACTAAAA-TTATTGGTAC--G----GTGTTTCGTACCATGG-AAAATTATTGGTA------------C-CG-------A-C-CGTACCGCTTGCTACGCCtaat
gi|14 : aatttG----TGTAGCAACTA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--G--------------CATTCTTGCTAGGGGT-------------C---TAG----------CAAA-------A---------A-A--------ATGAAAC----AT-TGAA-GCAAATATG-ctac
gi|15 : cGCTGAAA-TTATTGGTAC--G----GTTTTCCGTA-CTAGG-AAAATTCTTGGTACAA-C------------CA-C--AGC-CGTACCGCTTTCTACGCC
gi|16 : AGG----CGTAGCAACGA-AAA-A-------------CT-CTTAAGCGTCCAAAAGTGCACCAAAGGT---G-------------CACTTTTGCTAGGAGGtatgc
gi|17 : -------A---------A-A--------A----------AT-TGAA-GCAGAATTG-AGCAT-TCTG
gi|18 : acatgctttcatggaacatttttctTACCTTGG-AAAATTATTGGTA-------A--GGC-CA--A-A--G-C-AATACCGCTTGCTACGCCa
gi|19 : aTAATGGTACGG-CCAA--AAC-CG-TA-CTAA-C-CGTACCGCTGGCTACGCCcat
gi|2 : aa----CATAGCAACGA-AAA----TATTGGTACTGCT-CTGAAGCG----GAGGTGCACC---------------------------TTTGC---GGGGG-----GGGG--AT-------GCT-TCCCCCAGA-------A---------A-AGTTTTGAAA----------ATATGAA-GCAAATCTG-TGCAT-TCAAGAGCC-TTTACCGAAC--AT---AT-AC-ATGTAA--TGATACC-C-----TACATATGCCAGTCA---TTATGTAAAACGTGCTT-----G-CTATTTTGAATCGTT--T-----TAA-GCATTT-------ACTT--TTT--------------ATT-G-GTTATAA--CTTAAACTTGCTGAAA-TTATTGGTAC--T----GTTTTCTGTACCTCGG-AAATTTATTGGTcatg
gi|2 : TTT--------------ATT-G-GTTTT-----TTA--CTTGTTGGAA-TTATTGGTACCAGTACTGTTTTTTCTATCTTGG-AAAATTATTGGCACtttttacttgttggaattattggtaccagtactgttttttctatcttggaaaattattggcac
gi|20 : catagcaacgaaaatattggtactgctctgaagcggaggtgcacctttgcgggggggggatgcttcccccagaaaagttttgaaaatatgaagcaaatctgtgcattcaagagcctttaccgaacatatacatgtaatgataccctacatatgccagtcattatgtaaaacgtgcttgctattttgaatcgttttaagcatttactttttattggttataacttaaacttgctgaaattattggtactgttttctgtacctcggaaaG-AAAATGATTGGTACGA-CAAA--AGC-CG-TA-CCAA-C-TGTACC----GCTACGCC
gi|3 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACTTGGGGGG-----GGGG--GTATATAG-GCTGTCCCCCAGA-------A---------G-A--------A----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTG--A-TTATTAGTAG--G----TTTTTTAGTA-ATTGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTA-C--A-CATGTACCGCTTGCAAGGCCATcat
gi|4 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGT--GG-------------CATTTTTACTTGGGGGG-----GGGG--GTATATAG-GCTGTCCCCCAGA-------A---------G-A--------A----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTG--A-TTATTAGTAG--G----TTTTTTAGTA-ATTGG-AAAATTATTGGTAAGA-C--A--AGC-CGTTA-C--A-CATGTACCGCTTGCAAGGCCAT
gi|5 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CTTGGGGGG-----GGGGTCATA--TAGCATC-TCCCCCAGA-------A---------ATC--------A----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAAC--ATATAATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACAT-AATT---TTT-------TCATTC----T---A--T------AA-GCATTT-------ATTT-CTTT--------------AT--G-TGTTTAAA-CTTAAGC-TGCTGAAATTTATTAGTAC--C----GTTT--CATACCTTGGAAAAATTAT--GTACGACC--AATAGC-CGTTA-CA-A-C-TGTACCGCCTGC
gi|6 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-T--G--------------CATTTTT-CTTGGGGGG-----GGGGTCATA--TAGCATC-TCCCCCAGA-------A---------ATC--------A----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAAC--ATATAATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACAT-AATT---TTT-------TCATTC----T---A--T------AA-GCATTT-------ATTT-CTTT--------------AT--G-TGTTTAAA-CTTAAGC-TGCTGAAATTTATTAGTAC--C----GTTT--CATACCTTGGAAAAATTAT--GTACGACC--AATAGC-CGTTA-CA-A-C-TGTACCGCCTGCaa
gi|7 : CAGAGG----CGTAGCAACGA-AAA-AA-TATTAGTACTGCT-TTGAAGCG----GAAGTGCA---------------------------TTTTTGGTAGGGGGGTTTC-GGAC--AT-------GCT-CCCCCGAAATTTTTTGA---------A-A--------A----------AT-TGAA-GCAAATTTG-TGCAT-TCTGAAGCC-ATTTCAGAAC--ATATCATGAT-AT----------CCTACA--T------------ATGCCATATAC----ATTGGTACG-----G-T--TTT----CCGTACCT-----TGA-AAAATT-------ATTGGTTTT-----------------------TTAA--CTAAAAATTGCTGAAA-TTATTGGTAC--T----GTTTTCTGTACCTTGG-AAAATTATTGGCACCA----A--AGC-CG-TACC--A-A-CGTACCGCCTGCTGCGCaa
gi|8 : a-AATGTTAAGAT-CA--TCTA---ATTTTAGTGGCATTTACTTTGATTTTCTTTTTTTGG-TCATTT----TCGTA--T-----TAA-GCATTTTTGGATTGTTTTTTTTTTTTTTTTATTAATATT-GCTTTTTAA--CTTAAACTTGTTAAAA-TGACTGGTAC--G----GTGTTCTGTACCTTGG-AAAATTATTGGTAC---C--A---------------A-C-TGTATCGCTTGCTACGCC
gi|9 : gtttttttagccattgcacgtcaaaaTAATGGAGTTTACTTTAA--GTTTTA-----G-TAATTT----TCGTA--T-----TAA-GCATTT-------AATTT-TTT--------------ATT-G-GTTTTAAACCTT-ACCTTTCTGAAA-TTATTGGTAC--G----GTTTTCTGTACCTTGG-ACAATTATTGGTACAA-CCAA--GGC-CG-TA-CAAA-C-CGTACCGCTTGCTACGCCtat
blockSeqs : GCGC C G G G T TCCA A C GTAGGTACGGAAGAAGAGAGACT G T TCTGA GTGCTCCCCAAAAAAATATTTTAAAA A C T T G A AT . TA G T . TT A GTC CAT C A GTA GT TTTTGG TGAA CC T . TTGGATT TTTTTTTTTTTTTATTAATATTGCT AC A T CAGTACT TTC C A CGACCAATAGCCGTTACA G A
blockSeqs : GCGC . G G G T . A T AAAGGTGG G A TTTC ATGCTTCCCCCAGAAAAGTTTTGAAA . . T . G A AT . TA G T . TT . GTC . T A AGT GT GG . . T . . TCTTTATTGT A A T G TCC C A CGACCAATAGCCGTTACA . A
blockSeqs : . . . G G . . A C AAAGGTGG G T . TCATATAGCATCTCCCCCAGAAATCA . . T . . A T . TC G . . TT . TC . T A AGT GT G . . T . . TCTTTATTGT A G . G TCT C . CGGCCAAAACCGTACTA . .
blockSeqs : . . . G G . . A C TACGGTG G A . TCATATAGCATCTCCCCCAGAAATCA . . T . . A T . . G . . TT . T . T A TTT GT G . . T . . TTTTATTGG . G . T TTT T . CGACAAAAGCCGTACCA . .
blockSeqs : . . . G G . . G C AAAGGTG G A . GCGGGTGTCTGAATTTTTTTTTAAA . . T . . G T . . G . . TG . T . T C TTT GG G . . T . . TTTATTGG . G . G TTA C . CAACCAAGGCCGTACAA . .
blockSeqs : . . . G C . . A C AAAGGTG G T . GTATATAGGCTGTCCCCCAGAAGAA . . T . . G T . . . . . . . T . . C AT TT G . . T . . CTTTATGT . G . G TTA C . AGACAAGCCGTTAC . .
blockSeqs : . . . . C . . A C AAAGTG A T . GTATATAGGCTGTCCCCCAGAAGAA . . C . . A A . . . . . . . . A AT GT G . . T . . CTTTATGT . A . C TCT C . AGACAAGCCGTTAC . .
blockSeqs : . . . . G . . A C AAAGTG A T . ATGCTCCCCCGAAATTTTTTGAAAA . . C . . . . . . . . . . . . . . . . GTTTT . A . C TCT C . CCAAAGCCGTACC . .
blockSeqs : . . . . . . . . C . G T . GGGGGTCTGAATTTTTTTTAA . . T . . . . . . . . . . . . . . . C . T TCT C . AGGCCAAA . .
blockSeqs : . . . . . . . . . . . A . CTAGCAAAAAAATGAAAC . . . . . . . . G C . . CAACCAC . .
blockSeqs : . . . . . . . . . . . . . . . . . G C . . CCG . .
blockSeqs : . . CCA . .
blockSeqs : .
blockSeqCons : AAAGGTG**************** ** TT T*** GT T***** TCTTTATTGT**************** G****** TCT CGACCAAAGCCGTACA*******
originalCons : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGT--GG-------------CATTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTTAA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCCGTACCTTGG-AAAATTATTGGTACGA-C--A--AGC-CG-TA-C--A-C-CGTACCGCTTGCTACGCCAT
finalCons : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGTG----------------CATTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-A--------A----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGAT-ATG-AATTTGAAACT-CAT---TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--TT-----AA-GCATTT-------ATTTTCTTTATTGT----------------TTTTAA--CTTAAGCTTGCTGAAA-TTATTGGTACG------GTTTTCTGTACCTTGG-AAAATTATTGGTACGACCAAAGCCGTACA-------A-C-CGTACCGCTTGCTACGCCAT
Alignments
lowQualScore : 1111 2222222222222222222 11111 8888888888888888888888888888888888888888888888888888888 11 11 1 2222 11 1111111 11111 11111111 1111111 11 2222222222222222 11111111 22222222222222222
lowQualScore : 4444 3 6 8 4 6 7777 2 1 5 4 3333333333333333333 1 2 66666 9999999999999999999999999999999999999999999999999999999 3 3 1 3 7 3 11 66 55 2 0 5 22 5 1111 888 6 1 55 7 3333333 4 00000 66666666 4 3333333 4 11 3333333333333333 3 55 7 55 1 0 6 22222222 22 6 2 5 22222222222222222 6
lowQualScore : .... . . . . . .... . . . . ................... . . ..... ....................................................... . . . . . . .. .. .. . . . .. . .... ... . . .. . ....... . ..... ........ . ....... . .. ................ . .. . .. . . . ........ .. . . . ................. .
lowQualScore : 2222 3 7 8 6 7 1111 4 0 8 6 2222222222222222222 0 2 88888 7777777777777777777777777777777777777777777777777777777 3 3 7 3 3 8 44 55 55 5 0 7 77 0 5555 888 2 8 22 5 1111111 0 88888 33333333 0 0000000 9 44 3333333333333333 6 55 3 00 8 4 7 55555555 88 7 8 7 00000000000000000 2
consensus : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGTG-CA----------------TTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-AA----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCC-GTACCTTGG-AAAATTATTGGTACGACCAA-AGC-CG-TA-C-AACCGTACCGCTTGCTACGCCAT
Reference ( family-4713 ) : CTCAGAGG----CGTAGCAACGA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGTG-CA----------------TTTTTGCTNGGGGGG-----GGGG--GT---TAG-GCT-TCCCCCAGA-------A---------A-AA----------AT-TGAA-GCAAATCTG-TGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACNTTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTGAAA-TTATTGGTAC--G----GTTTTCT-GTACCTTGG-AAAATTATTGGTACGACCAA-AGC-CG-TA-C-AACCGTACCGCTTGCTACGCCAT
gi|1 : GG----TGTTGCAACGA-AAC-ATAAACTGGCACTGCT-CTGTAGCG----GAAGTACATCGAAGGTG-CA----------------CTTTTGCAGGGGGGG-----GGGGT-GT---------------CCAGA-------A---------A-AA----------TT-TGGA---AAA--TG-TGCAT-TCTGGAGCC-TTTTCAGAACATATA--ATGA-CAT
gi|1 : T-CA--TCTA---ATTCTTATGGAGTTTACTTTAATT--TTTT-----G-TCATTT----TCGTA--TACTAGTAAAGCATTC-------ATTTT-TTT--------------ATTAG-TTTTT-AA--CTTAAACTTGCTGAAA------------------------C-GTACCTTGG-AAAATTATTGGTAC-----A-TGTACG-TACC-AACCGTATCGCTTGCTTCGCCcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagatcatctaattcttatggagtttactttaattttttgtcattttcgtatactagtaaagcattcatttttttattagtttttaacttaaacttgctgaaacgtaccttggaaaattattggtacatgtacgtaccaaccgtatcgcttgcttcgccc
gi|10 : ggtgttgcaacgaaacataaactggcactgctctgtagcggaagtacatcgaaggtgcacttttgcagggggggggggtgtccagaaaaatttggaaaatgtgcattctggagccttttcagaacatataatgacatcctacatatatatatgtgtcagtcattatgtaaaaagtttgttttcttggtcattgcacatttaaaaatgctaagaCAGAGG----TGTAGCAACGA-AAA-CAATGTT-GTAC-GTC-TTGAAGCG----AAAGTGCA-CGTAGGTA-CGGAAGAAGAGAGACTCCTTTGTGCTTAGGGGG-----GGGG--G----CGG-GTG-TCT----GA-------ATTTTTTTTTA-AA-------------TGAACGCAAATCTGTTGCTG-TCTAGAGCC--TTTCAAAAC--ATA--AC-A-TATc
gi|11 : GAGG----TGTAGCAACGA-AAA-CAATGTTGGTACTGCT-TTGAAGCG----AAAGTGCACCTACGGTG-CA----------------CTTTTGCTAGGGGGG-----GGGG--G------G-GGG-TCT----GA-------ATTTTTTT--T-AA----------AT-TGAA-GCAAATCTG-TGCAT-TCTAGAGCC--TTTCAGAAC--ATA--a
gi|12 : AGAGG----CGCAGCAACGACAAA-AAATATTGGTACTGCT-CTG-------------TGCATC-----------------------------TTGCTTGGGGAGTCTGAAGGG--GT-------GCT---CCCCAAA-------A---------A-AATATTTTAAAAAT-TGAA-GCAAATCTG-CGCAT-TCTGGAGCC-TTTTCAGAAC--ATA--caattata
gi|13 : TTGTTGTT-----GGTCATTT----TCGTT--T-----TAA-ACATTT-------ATTT--------------------------------------AAACTTACTAAAA-TTATTGGTAC--G----GTGTTTC-GTACCATGG-AAAATTATTGGTAC-----------------C-GACCGTACCGCTTGCTACGCCtaat
gi|14 : aatttG----TGTAGCAACTA-AAA-AAATATTGGTACTGCT-CTGAAGCG----GAAGTGCACCAAAGGTG-CA----------------TTCTTGCTAGGGGT-------------C---TAG----------CAAA-------A---------A-AATGAAAC----AT-TGAA-GCAAATATG-ctac
gi|15 : cGCTGAAA-TTATTGGTAC--G----GTTTTCC-GTA-CTAGG-AAAATTCTTGGTACAACC-----------A-C-AGCCGTACCGCTTTCTACGCC
gi|16 : AGG----CGTAGCAACGA-AAA-A-------------CT-CTTAAGCGTCCAAAAGTGCACCAAAGGTG-CA----------------CTTTTGCTAGGAGGtatgc
gi|17 : -------A---------A-AA----------AT-TGAA-GCAGAATTG-AGCAT-TCTG
gi|18 : acatgctttcatggaacatttttctTACCTTGG-AAAATTATTGGTAAGGCCAA-AG--------C-AA---TACCGCTTGCTACGCCa
gi|19 : aTAATGGTACGGCCAA-AAC-CG-TA-CTAACCGTACCGCTGGCTACGCCcat
gi|2 : aa----CATAGCAACGA-AAA----TATTGGTACTGCT-CTGAAGCG----GAGGTGCACC----------------------------TTTGC---GGGGG-----GGGG--AT-------GCT-TCCCCCAGA-------AAAGTTTTG-A-AA----------ATATGAA-GCAAATCTG-TGCAT-TCAAGAGCC-TTTACCGAAC--AT---AT-A-CATGTAA--TGATACC-C-----TACATATGCCAGTCA---TTATGTAAAACGTGCTT-----G-CTATTTTGAATCGTT--T-----TAA-GCATTT-------ACTT--TTT--------------ATT-G-GTTAT-AA--CTTAAACTTGCTGAAA-TTATTGGTAC--T----GTTTTCT-GTACCTCGG-AAATTTATTGGTcatg
gi|2 : TTT--------------ATT-G-GTTTT------TTA--CTTGTTGGAA-TTATTGGTACCAGTACTGTTTTTT-CTATCTTGG-AAAATTATTGGCACtttttacttgttggaattattggtaccagtactgttttttctatcttggaaaattattggcac
gi|20 : catagcaacgaaaatattggtactgctctgaagcggaggtgcacctttgcgggggggggatgcttcccccagaaaagttttgaaaatatgaagcaaatctgtgcattcaagagcctttaccgaacatatacatgtaatgataccctacatatgccagtcattatgtaaaacgtgcttgctattttgaatcgttttaagcatttactttttattggttataacttaaacttgctgaaattattggtactgttttctgtacctcggaaaG-AAAATGATTGGTACGACAAA-AGC-CG-TACC-AACTGTACC----GCTACGCC
gi|3 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGTGGCA----------------TTTTTACTTGGGGGG-----GGGG--GTATATAG-GCTGTCCCCCAGA-------A---------G-AA----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTG--A-TTATTAGTA---G----GTTTTTTAGTA-ATTGG-AAAATTATTGGTAAGAC--A-AGC-CGTTA-C-ACATGTACCGCTTGCAAGGCCATcat
gi|4 : CTCAGAGG----CGTAGCAA-GA-AAT-AAATATTG-TACT-CT-CTGAAGCG----GAAGTGTACCAAAGGTGGCA----------------TTTTTACTTGGGGGG-----GGGG--GTATATAG-GCTGTCCCCCAGA-------A---------G-AA----------AT-TGAA-GCAAATC-G-TGCATGTCTGGGGCCATTTTCAGAAC--TTA--ATGA-TATG-AATTTGAAACT-CA--T-TA---ATTCTAATGGAATTTACAGTAATTGTTTTT-----G-TCATTT----TCGTA--T-----TAA-GCATTT-------ATTTTCTTT--------------ATT-G-TTTTT-AA--CTTAAGCTTGCTG--A-TTATTAGTA---G----GTTTTTTAGTA-ATTGG-AAAATTATTGGTAAGAC--A-AGC-CGTTA-C-ACATGTACCGCTTGCAAGGCCAT
gi|5 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-TG-CA----------------TTTTT-CTTGGGGGG-----GGGGTCATA--TAGCATC-TCCCCCAGA-------A---------ATCA----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAACATATA--ATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACA-TAATT-TTT---------TCATTC-------TA--------TAA-GCATTT-------A-TTTCTTT--------------A-T-G-TGTTTAAA--CTTAAGC-TGCTGAAATTTATTAGTAC--C----GTTT--C-ATACCTTGGAAAAATTAT--GTACGACCAATAGC-CGTTA-C-AACTGTACCGCCTGC
gi|6 : CTCAGAGAGCGCCGTAGCAACGA-AAAGAAATATTG-TACTCCTTCTGAAGCG----GA-GCTTACCAAAG-TG-CA----------------TTTTT-CTTGGGGGG-----GGGGTCATA--TAGCATC-TCCCCCAGA-------A---------ATCA----------AT-TGAA-GCAAATCC--TGCAT-TCTGG-GCC-TTTTCAGAACATATA--ATGATTATG-AATTTGAAACT-CAGTC-TA---ATTC-AATGGAATTTACA-TAATT-TTT---------TCATTC-------TA--------TAA-GCATTT-------A-TTTCTTT--------------A-T-G-TGTTTAAA--CTTAAGC-TGCTGAAATTTATTAGTAC--C----GTTT--C-ATACCTTGGAAAAATTAT--GTACGACCAATAGC-CGTTA-C-AACTGTACCGCCTGCaa
gi|7 : CAGAGG----CGTAGCAACGA-AAA-AA-TATTAGTACTGCT-TTGAAGCG----GAAGTGCA----------------------------TTTTTGGTAGGGGGGTTTC-GGAC--AT-------GCT-CCCCCGAAATTTTTTGA---------A-AA----------AT-TGAA-GCAAATTTG-TGCAT-TCTGAAGCC-ATTTCAGAAC--ATATCATGA-TAT----------CCTACA--T------------ATGCCATATAC----ATTGGTACG-----G-T--TTT----CCGTACCT-----TGA-AAAATT-------ATTGGTTTT-----------------------TT-AA--CTAAAAATTGCTGAAA-TTATTGGTAC--T----GTTTTCT-GTACCTTGG-AAAATTATTGGC---ACCAA-AGC-CG-TA-C-CAACGTACCGCCTGCTGCGCaa
gi|8 : a-AATGTTAAGAT-CA--TCTA---ATTTTAGTGGCATTTACTTTGATTTTCTTTTTTTGG-TCATTT----TCGTA--T-----TAA-GCATTTTTGGATTGTTTTTTTTTTTTTTTTATTAATATT-GCTTTTT-AA--CTTAAACTTGTTAAAA-TGACTGGTAC--G----GTGTTCT-GTACCTTGG-AAAATTATTGGTAC-----------------C-AACTGTATCGCTTGCTACGCC
gi|9 : gtttttttagccattgcacgtcaaaaTAATGGAGTTTACTTTAA--GTTTTA-----G-TAATTT----TCGTA--T-----TAA-GCATTT-------AATTT-TTT--------------ATT-G-GTTTT-AAACCTT-ACCTTTCTGAAA-TTATTGGTAC--G----GTTTTCT-GTACCTTGG-ACAATTATTGGTACAACCAA-GGC-CG-TA-CAAACCGTACCGCTTGCTACGCCtat