lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 222222222222222 22222 11111 4444444444444444 1111111111111 111111 111111111111111111111111111111111111111111111111111111111111111111111111 1 1111 777777777777777777777777777777 33333333333333333 4444444444444444444444444444444444 222 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 111111 2222 11 11 1 1 444444444444444444444444444444444444444444444444444444444444 2222222222222222222222 22222 2 1 4 2222 2222 2222 2 1 22222 2 33333333 4444 2 4 1 2 1 2 1 4 7777777777777 6666666666666666666666666666666666666666666666666666666666666666666 4 4444 666 4 4 9999999999999 55555
lowQualScore : 999999999999999 4 4 22222 55 00000 2222222222222222 7777777777777 88 4 000000 1 4 0 111111111111111111111111111111111111111111111111111111111111111111111111 2 2 1111 1 333333333333333333333333333333 66 4 88888888888888888 0 0000000000000000000000000000000000 11 3 777 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 999999 4444 88 7 99 5 4 0 444444444444444444444444444444444444444444444444444444444444 2 0000000000000000000000 11111 3 0 5 0 8888 1111 1111 0 5 22222 0 00000000 2222 0 0 5 0 5 0 5 0 7777777777777 6666666666666666666666666666666666666666666666666666666666666666666 0 6 6 2222 111 6 0 0 6 2222222222222 11111
lowQualScore : ............... . . ..... .. ..... ................ ............. .. . ...... . . . ........................................................................ . . .... . .............................. .. . ................. . .................................. .. . ... . ...................................................................................... .. ...... .... .. . .. . . . ............................................................ . ...................... ..... . . . . .... .... .... . . ..... . ........ .... . . . . . . . . ............. ................................................................... . . . .... ... . . . . ............. .....
lowQualScore : 999999999999999 4 4 33333 55 00000 0000000000000000 5555555555555 22 3 555555 9 3 8 999999999999999999999999999999999999999999999999999999999999999999999999 2 6 4444 9 777777777777777777777777777777 11 4 99999999999999999 4 9999999999999999999999999999999999 55 2 555 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 333333 3333 33 3 55 5 0 5 555555555555555555555555555555555555555555555555555555555555 5 5555555555555555555555 55555 0 0 5 0 0000 0000 0000 0 5 00000 0 55555555 5555 0 0 0 0 5 0 5 0 0000000000000 0000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0000 000 0 0 0 0 0000000000000 00000
consensus : AGTAAAATA-CG-A-CT-TTNATATCC-TC-T--C--TT--G-----AAAA-------NN----TN-AAA-GT---------ACT-GACT------TTCGTCTCCAGTAGAACAAA-A-----TCACG-NCAAG---------T-AA-GA--T------N---T-C--A--AAA-ACTATTTA---TAGGAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT-CA-TGATATTTT--GAACT-T-NCTAN-TC--TCTTGGGGCCATTTTAGATGCT-C-ACTCCA---AATNAT-TN--TTTTAG-G--GAAAACTTTGAG--AAATA-AATT-C---TTTC--TTTT----TAATATGATCCGATATCC-CC-ACTTCA-TTTT-AT----ATCA-TTA-TGCA-C-----CGTG--TATA--GCACTGT-T-TTTAT---GTGAAAA--ATGTTCANGAAATNCCAAGNAGTAGAAATGGGATTGAAATTGAAATTGAATCAATATAATAGNGNCCATGAGCAAAAATCTTATTACANGGGGATTCGGTCTGCCTCATATCTCATCTGCTGTTTTGCCAATTTTATTTGGCTCTGCTCCGCCAAACAGACTGAGTGTATGCTCTTACTCAGCTGTTTATCACTACAATTTTAGAAAAAAAATATTTAATACGCCNACAAAGTAATGGCTAATACAATTAATCAGTATGTGTGATATACATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAAGATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTG---TGTT---ATACTCTG-------TGCAGATCACTTTGCTTGTG-----AG-ATGCTG-AT-TAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATT-ATATTGTCCTGT-TTAGTAGTCATACTGGGA-TGG-TAGAGATT
Reference ( gi|2 ) : AGTAAAATA-CA-A-CT-TTTGTGTCC-TC-T--C--TT--G-----AAAA-------TC----TT-AAA-GT---------ACT-AACT------TTTGTCTCCAGTAGAACAAA-A-----TCATA-CCAAG---------TCAA-GA--T------G---T-C--A--AAA-ACTACTTA---CAGGAATAAGTCGTAACTGGCAGAAG----TAACAAAG-TATAA----TGA------TACTGCA-TGATATTTT--GAACT-T-ACTAAATC--TCGTGAGGCCATTTTAGATGCT-CGACTCCA---AATCAT-TA--TTTTAG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCTGATAACC-C--ACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCACTGT-T-TTTAT---ATGAAAA--ATGTTCAAAAAATTCTAAGCAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTTGGTCTGCTTCATATCT------T-GTTT-AC-------ATT-GGCTCTGCTCCTC-AAACAGACTGAG-GTATGCTCTTACTCAG-TGTTTA-CA-TACAATTT-AG-AAAAAA-TATTTAATACGCCTACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATGCGAATTTTTAAGGCCGT-CGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTT-GTCTTGACACAAAAAC-TA-AGTTCA-T-TTGGAACCAGTCAGGTGT-CTGGTATGTCTCCGTA-TCTGGGATGGTTAGAGATTATATTGTTCGTGTCTCCAGTAT-CTGGATGTAGAGATTATAT-TGTCTGTATATTCCAGTAT--CTGAGATGGTA-GAGATTTATATTGTTCTGTGTTCTCAGT-AT-CTGGGATTGGTTAGAGATTCA
gi|1 : AGTAAAATA-CATA-CT-TTTGTGTTC-TC-T--C--TT--G-----AAA---------T----TT-AAA-GT----------CT-AA---------TTGTCTC-AGTAGAA-AAA-G-----T-ATA-C-AAG---------TCAACGA--TTGGGGGG---T-C--A--AAA-ACTACTTA---CAGGAATACGTCGTAAGTGGCAGAAG----TAAAAAAG-T-TAA----TGA------TACTGCA-TGATATTTTTGAAACT-T-ACTAA--T--TCGTGAG--CATTTTAGCTGCTGCGACTCCA---AATGAT-TA--TTT-AGCG--GAAAACTTTGAGCTAAATA-AATT-----TTTCATTTCT----TAATAT-ATCTG-TAACC-CCTACTTCAGTTTTCAT----ATCAGTTA-TGCAAC-----CGTGAGTATA--GCAC-GTGT-TTTAT---ATGAAAACCATGTTCAAAAA-TTCTAAGAAGTAGAAATGGGATTGAAATTGAAATTGAATCA-TATAATAAGGCCTAT---C-----TTTTATT-C-TGGGGATTTCGTCTGCTTCATATCT------TTGTTTTAT-------ATTTGGC-CTGCTCCTCCAAACAG-CTGAGTGTATGCTCTTACT--GCTGTTTATCACTACAATTTTAG-AAAAAAATATTTA-TA-GCTAACAAAGTAATGGCTAATACAATTAATCAGTATGTGTAATATACATG-GAATTTTTAAGGC-GT-CGAT-TTTGATGTATAAGATATAAAAAAAAA-TGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTG---TGTT---ATACTCTG-------TGCAGATCACTTTGCTTGTG-----AG-ATGCTG-AT-TAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATT-ATATTGTCCTGT-TTAGTAGTCATACTGGGA-TGG-TAGAGATT
gi|10 : cagtAGTAGACTATCA-ATCA-TTTA-ATTC-TT-T--CCATT--G-----AAAA-------AT----TT-GAA-----------------ACT------CCTG-----ACTAGAACAAA-T-----TGACA-GCAAG---------G-AA-AA--T------A---C-C--CTCAAA-ACTA--TA---T--GAATAAATCTTGATTACCAAAAG----TAA--AAG--------------------ACT--A-T-ATACTTT--GAACT-T-ATCA--TCCATCTTGGGGCCATTTTAGATTCT-CAACCCCA---AATCataattgtctggttcctagttgatggctatatgttcat
gi|6 : gctaatatgaggtatgtggaacttgaactagtagggaatacatttttagtggaatcaaagtatAGTAATATA-TT-A-CT-TT---ATTC-TT-T--CAAGT--G-----AAAAAAAGATGTT----TG-AAA-GT---------TCT-GATT------TTCGTATTTGATAGAATAAA-A-----T--TA-C--AG---------TAAG-AA--T------G---T-TTTATTAAA-AGTA--TG---C--GAATAAGCCGTAACTGGCAAAtt
gi|5 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaGTAAAATATCA-A----TTCGTATTC-CC-TAGC--TT--GTTTCAAAGA-------TT----TG-AAA-GTGTTTAGTTTACT-CAGT------TTCCTCTCTAGTAAAAGGAA-A-----TTA----CAAG-----------AA-GAAAT------GCTTT-T--A--AGA------TCA---TGGGTATAAATTATGACTGACAAAAG----TGACAGAA-TATAG----------------------GATATTTT--AAACT-TCCCTTTATC--T-----AACAATTCTAAATGC----ACTACAATTAATGATGTC--TTTT---C--TAATATCT------AACTA-AATTATAGGTTGT--TTTC----TAATATGATTCTATATTCAA--ACTTTA-CTTT-ATTTCAATCA-CTA-TGTA-A-----C-T---TATT--ACACTGG-T-ATTATGAGGTGAAAA--A-ATTC-TGAAATACCAAGTAGTAGAAAT--------A--TAA--------C-ATATAATAGCGACCATGAGCAAAAATCT-A--ACAAAGAAATTCGGTTTACCTCATATCTCATCTGC-GTTT-GCCAATTTTATT-AGTTCTACTCTGC-AAACAAACttttgaaatttctatctcttttggagtcatcttaactgttttacccctaacatattgttctgaagggagaaa
gi|7 : GTTAAATA-TC-A-CT-TTAAAATCC-CC-TTAC--TT--G-----AAAA----------------AAA-AA---------ACTGAATTGCACGATTTGTCTCAAG-AAAACAAACA-----ACAGG-GCAA------------AA-GA--T----------T-T--A--TAA----ATTTA---TAGGGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----T
gi|9 : cttaagactgatctgatatgcactgtatgtgcctgtgcccactttcagttgtacaacatagaaccacatattactctatattatttacatctttaaaatttgatgggtgtgggaaacttgaataaaggggactatattttcggtaaaacaatggcgttAAAATA-TG-T-TTCTTTATTTCC-TCAT--T--TT--G-----AAAA-------CA----TT-TAA-GT---------ACT-GACT------TTTGTGTCCAGCAGAACAAA-T-----TCt
gi|8 : gatttttgtctacattaagataagtagaagatatgcgccaaatgtgcatgtatttttttaacctatgatattatgtcaggttactttttcttttttgttgttataccatttactgctaatttaggtgtacggaacgttaattcatgcagctcatatgttcatgaaatcaaaaacgtttgtcaaAAATA-TC-A-CT-TTAAAATCC-CC-TTAC--TT--G-----AAAA-------AAAAAATG-AAA-TT---------GCC-GACT------TT-GTCTCAAGAAAAACAAA-C-----TAACAGGCAA------------AA-GA--T----------T-T--A--TAA----ATTTA---TAGGGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Tccagca
gi|3 : atatgcactgtatgtgcctgtgtccctttcagttgtacaacatagaaacacatattactctatattattcactctttaaaatttgatgggtttggaaacttgaataaaggggattatattttcggtgaaacaatggcgttgtTCC-TC-A--T--CT--G-----AAAA-------AC----TT-CAACGC---------ACT-AA-T------TTTGTCTCCAGTA-AATACA-A-----TCACG-ACAAG---------AAAA-GA--T------T---T-T--C--AAA-ACCAT-------GGGAATAAACCATAACTGATAAAAT----TAACAGA--CATAGCACGTGAAGTAAATATT-TA-TGATATCGT--AAATT-T-CCTAG-TC--TCTTTGGGCCACTTTAAATAC-------CCT---AATCTT-GAGCTTTTCG-GAAGAAAACTTTGAGA-AAATC-AGT-----------------------TATGA--GGATATCC-CT-ACTTCATTTTT-GC----GTCC-TGATTTCA-CAAATACATG--TACAATGTACTAT-TATCTAA---GGGAAAA--ATGTtt
gi|4 : aaattgttgacgtttattaaggatgcattcttgtcactatgcatccagtttagatatgctccatatgagcatttactttctttatttataaaacacgtgagtcatggaacctttttttttctttttgtttttttttttacatatgtaatattaggaaagggggacctgaattacagggggacaatattttctgtgaactatgatatcactgtattTCCGTC-T--T--TTTAA-----AAAA-------AA----TG-AAA-GC---------ACT-GACT------TTCGTTTCCAGTAGAACACT-T-----TGAAA-GCAAG---------TGCA-GA--T------T---TTC--A--AAA-----CTT------GGAATAAATCGTAACTGACAAAAT----TAACAGGG-TATAG----T--------T-TTGTA-TGATATCTT--TAATT-T-GCGTTCTC--TCTTAGCGCTTTTTTAAATTCC-TTAGT------AAT-AC-TT--TCTTAA-G--GAAAAAATTGA---AAATATGATTTCC--TCTC--TCTTACTGTAATATG---TGATgtggtggtaaagtgacagaaagtacgatcaacatcaatcgaggaaatttgttccaccttatcggtgcttaagcttagtcgcttgatatgcagatatgctcatacacatgtacatagtttttatgttgcaaattaaaaaaaagttgtgatggatcgcatgcgtatgcttatatgcaatttgtgtctgctttaatgaaatttt
gi|12 : aatcggatcgtttgttcatccttttggaatgctggattcttgtttcattcagacaaagtagatatgcaccacatgtgcatgtattgtctttagttatgcatcatgtagtcgtctggagccccattgctcttactgactgctgcaggctataatagttgtaacattgaatttggggaacatgaattacagtgaaatatattttcagtgaatcaactgcacagtcattatat--C--TT--G-----AAAA--------A----TG-AAA-GT---------ACT-GACA------TTAATCTCCAGTAAAACAAA-A-----TCAAA-TCGAGGAAATATTTTCAATGA--T------C---T-C--C--AAATATTATCCAAATTAGGACTAAATCGTAACTGGCA-AAGTATCTAACAGA--TAT-A----TGA------AAATTCA---A---TTC--GAACT-C-ATTAGATC--
gi|13 : A-------TT----TTGAAA-AT---------ACA-TACT------TTTGTTTCCAGTAAAACAAA-ATGACTTCATG---AAA-----------AA-AA--T------T---T-C--A--AAA------CTA---TAGGAATTGGTCTT------CATAGA----T--CAAAG-T---A----GGA------TAT--------TATTTT--GAATT-T-ACC-ACCC--TCTCGGTGCCATTTTGTATGCT-CTACCTCG---GATaagtcg
gi|16 : GAACAAA-A-------GTG-C-AAA---------TAAA-GA--C------C---TTC--A--A-----TACT-A---TGAGAAT--GTCTTAACTGGTA--AG----TGACAGAA-TAT------TGAAAATT-TACT----TGATATTTT--GGACTGT-TC-----C--TTGT-AGGACATTTTAGATGCT-
gi|18 : cccacgt---T-C--C--AAA-ACTATT-------GGAA-AAGTCGTAACTGACGAAAGT---TATCAGAGTTATAA----AAA------TTTGGCATTGATATCTT--GAACT-T-GC
gi|14 : TATGCTCTTACTCAG-TGTTTA-CA-TACAATTT-AGAAAAAAA-TATTTAATACG-CTACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAA
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TCACCCTTCAGACGAATTAAATGATGTTCGCCATATGTACAGATATTTTTCTCAGTTATAAACATGCGAGTTATCAAGTCACACTATATCTTCTTATTTAGAGTCGTATCATTTGATGCTAAAATGGGGTGTGGAGAACTTGAAATATAAGGGACTATATTTTCAAAGCAATTATTGTAGTAAAATACTGTAGGATATCACCTTATT
Unaligned ( gi|15 ): TTCAGTTACGAATCATTGGTCCACATTACTCTTTCTTATATTACAATGGGTCTGTCGAGTTTTTGGGGACTATATTTTCGGTGGATGTGAATCGACGGCGTAGTGAAATTCAATTTATACCCTCATTCGAA
Unaligned ( gi|17 ): AAATCGTAATTTGCTATTGAGGATGCATTCTTTCGTTCAGACAAATTAGAAGATATGCACCATAAATGCATATATTTTTGTTTAATAATCAAACATAGTTCACGTAGTTG
Unaligned ( gi|19 ): TTTATGAGTGGTGGATTATTGTCATCATTTAGACAAATTAGAACTCACGCACCGTATGGGTATGTAT
Unaligned ( gi|20 ): AATTCTCGTCTCCAGTAAAACACATACATAAGAAGAAAAGATTTTCAGAACTATGGGGA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1111 1111111111 11111 222222222222 1111111111 111111111 4444444444444444444444444444444444444444444444444444444444444444444444 1111 88888888888888888888888888888 111111 2222 111 222222222222 11111111 333 666666666666666666666 33 2222 1 1 3333333 22 111 1 1 111 11 222 44444444444 111 99999999999999999999 222222222222222222222222 22 1 2 2222 2 2 11 11 33333 3333 2 1 11 2 1 1 1 1 1 1 222 2 2222 4444444444 222 1 1 1 11 1 1 1 22 1 1
lowQualScore : 7777 4 666 7777777777 55 8 77777 55 99999 555555555555 3333333333 1 222222222 3 0 77777 4444444444444444444444444444444444444444444444444444444444444444444444 0 0000 77 11111111111111111111111111111 55 2 222222 44 4 4 4 1111 0 1 000 111111111111 55555555 0 222 8 111111111111111111111 777 77 4 33 1111 0 0 1111111 0 33 3 666 0 0 3 777 33 3 000 1 0 1 6 22222222222 333 11 1 0 33333333333333333333 0 0 0 111111111111111111111111 7 77 7 5 6 3 8888 3 3 7 6 33 7 7 44 55555 6666 0 3 3 6 33 7 3 7 5 5 5 5 5 5 111 0 3333 0000000000 000 5 2 5 5 88 5 5 5 4 2 77 5 5
lowQualScore : .... . ... .......... .. . ..... .. ..... ............ .......... . ......... . . ..... ...................................................................... . .... .. ............................. .. . ...... .. . . . .... . . ... ............ ........ . ... . ..................... ... .. . .. .... . . ....... . .. . ... . . . ... .. . ... . . . . ........... ... .. . . .................... . . . ........................ . .. . . . . .... . . . . .. . . .. ..... .... . . . . .. . . . . . . . . . ... . .... .......... ... . . . . .. . . . . . .. . .
lowQualScore : 4444 4 333 5555555555 55 0 99999 00 11111 333333333333 8888888888 0 999999999 1 5 77777 3333333333333333333333333333333333333333333333333333333333333333333333 1 4444 88 33333333333333333333333333333 55 4 000000 66 4 4 4 6666 7 9 000 222222222222 22222222 8 000 0 444444444444444444444 888 22 2 88 2222 0 0 2222222 2 88 2 222 0 0 2 555 88 2 333 0 7 0 7 33333333333 000 77 0 7 00000000000000000000 7 7 7 000000000000000000000000 3 00 3 5 7 3 0000 7 7 3 7 00 3 3 77 77777 0000 7 3 3 7 33 3 3 3 0 5 5 5 0 5 000 0 0000 5555555555 555 0 5 5 5 00 0 5 0 0 5 55 0 5
consensus : AGTAAAATA-CG-ACT-TTTATAT----------CC--TC-T--C--TT--G-----AAAAAN-------TG-AAAGT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-AT---CAC-GN-CA--A-G--N-A-A-----------GA------TNTCC--AAA-ACTATTTA---TAGGAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATA--ATG--------A-----TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCAA---AT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT---T---TTC--TTTT----TAATATGATCCGATATCCCTACTTCAG-TTTTAT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTATG---TGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TGAAATTGAATCAATATAATAAGGCCTAT---C-----TTTTATTAC-TGGGAATTCGGTCTGCTTCATATCTC------TGTTTTG-CA----TA-TTGGCTCTGCTCC-CCAAACAGACTGAGTGTATGCTCTTACTCAG-TGTTTA-CA-TACAATTT-AGAAAAAAA-TATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
Reference ( family-4670 ) : AGTAAAATA-CG-ACT-TTNATAT----------CC--TC-T--C--TT--G-----AAAANN-------TN-AAAGT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-AT---CAC-GN-CA--A-G--T-A-A-----------GA------TNTCA--AAA-ACTATTTA---TAGGAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATA--ATG--------A-----TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCAA---AT-NAT---T---NTTTT--AG-G--GAAAACTTTGAG--AAATA-AATT--CT---TTC--TTTT----TAATATGATCCGATATCCCCACTTCA--TTTTAT----ATCA-TTA-TGCA-C-----CGTG--TATA--GCAC-TGTT-TTTATG---TGAAAA--ATGTTCANGAAATNCCAAGNAGTAGAAATGGGATTGAAATTGAAATTGAATCAATATAATAGNGNCCATGAGCAAAAATCTTATTACANGGGGATTCGGTCTGCCTCATATCTCATCTGCTGTTTTGCCAATTTTATTTGGCTCTGCTCCGCCAAACAGACTGAGTGTATGCTCTTACTCAGCTGTTTATCACTACAATTTTAGAAAAAAAATATTTAATACGCCNACAAAGTAATGGCTAATACAATTAATCAGTATGTGTGATATACATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAAGATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATA-CTCTGTGCAGATCACTTTGCTTGTGAGATGCTGATTAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTTTAGT--AGTCATACTGGGATGGTAGAGATT
gi|1 : AGTAAAATA-CATACT-TTTGTGT----------TC--TC-T--C--TT--G-----AAA--T-------TT-AAAGT----------CTAATT----------GTCTC-AGTAGAA-A-----AA-GTATACAA-GT-CA--ACGATT-G-G-----------GG------GGTCA--AAA-ACTACTTA---CAGGAATACGTCGTAAGTGGCAGAAG----TAAAAAAG-T-TA--ATG--------A-----TACTG-CA-TGATATTTTTGAAACTTAC-TA-A-T--TCGTG-AG--CATTTTAGC-TG-CTGCGACTCCAA---AT-GAT---T---ATTT---AGCG--GAAAACTTTGAGCTAAATA-AATT---T---TTCATTTCT----TAATAT-ATCTGTAACCCCTACTTCAGTTTTCAT----ATCAGTTA-TGCAAC-----CGTGAGTATA--GCACGTGTT-TT-ATA---TGAAAACCATGTTCAA-AAATTCTAAGAAGTAGAAATGGGATTGAAATTGAAATTGAATCA-TATAATAAGGCCTAT---C-----TTTTATT-C-TGGGGATTTCGTCTGCTTCATATCTT------TGTTTTA-------TATTTGGC-CTGCTCCTCCAAACAG-CTGAGTGTATGCTCTTACT--GCTGTTTATCACTACAATTTTAGAAAAAAA-TATTTA-TA-GCTAACAAAGTAATGGCTAATACAATTAATCAGTATGTGTAATATACATG-GAATTTTTAAGGC-GTC-GAT-TTTGATGTATAAGATATAAAA-AAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATA-CTCTGTGCAGATCACTTTGCTTGTGAGATGCTGATTAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTTTAGT--AGTCATACTGGGATGGTAGAGATT
gi|10 : cagt-TTTA-AT----------TC--TT-T--CCATT--G-----AAAAAT-------TTGAAACT---------CCTGACT-------------------AGAACA-----AA-TT---GAC-AG-CA--A-G--G-A-A-----------AA------TACCCTCAAA-ACTAT--A---T--GAATAAATCTTGATTACCAAAAG----TAAAAGAC-TATA-------------------------------TACTTT--GAACTTAT-CA-T-CCATCTTG-GGGCCATTTTAGA-TT-CT-CAACCCCAA---AT-ataattgtctggttcctagttgatggctatatgttcat
gi|12 : gctaatatgaggtatgtggaacttgaactagtagggaatacatttttagtggaatcaaagtatagtagactatcaatca--C--TT--G-----AAAAA--------TG-AAAGT---------ACTGACAT-------TAATCTCCAGTAAAACA-----AA-AT---CAA-AT-CG--A-G--G-A-AATATTTTCAATGA------TCTCC--AAATATTATCCAAATTAGGACTAAATCGTAACTGGC-AAAGTATCTAACAGA--TAT---ATG--------A-----ctt
gi|13 : -------TG-AAAAT---------ACATACTT-------TTGTTTCCAGTAAAACA-----AA-AT---GAC-TT-CATGA-A--A-A-A-----------AA------TTTCA--AAA------CTA---TAGGAATTGGTCTTCATAGATCAAAG----T---AGGA-TAT--------------------------------TATTTT--GAATTTAC-CA-C-CC-TCTCG-GTGCCATTTTGTA-TG-CT-C-aaattcaattcgaactcattagatcaagtcg
gi|14 : atttTATGCTCTTACTCAG-TGTTTA-CA-TACAATTT-AGAAAAAAA-TATTTAATACGC-TACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAAtacctcggat
gi|16 : GAACA-----AA-A--------GTGCA--A-A--T-A-AA----------GA------CCTTC--AAT-ACTAT-------GAGAAT--GTCTTAACTGGTAA--G----TGACAGAA-TAT----TG--------AAAATTTACT-----TGATATTTT--GGACT-------G-TT-CCTTGTAGGACATTTTAGA-TG-CT-
gi|18 : cccacgtTCC--AAA-ACTATT-------GGAA-AAGTCGTAACTGACGAAAGT---TATCAGAGTTATA--AAA--------A-----T-TTGGCATTGATATCTT--GAACTTGC-
gi|2 : AGTAAAATA-CA-ACT-TTTGTGT----------CC--TC-T--C--TT--G-----AAAATC-------TT-AAAGT---------ACTAACTT-------TTGTCTCCAGTAGAACA-----AA-AT---CAT-AC-CA--A-G--TCA-A-----------GA------TGTCA--AAA-ACTACTTA---CAGGAATAAGTCGTAACTGGCAGAAG----TAACAAAG-TATA--ATG--------A-----TACTG-CA-TGATATTTT--GAACTTAC-TA-AATC-TCGTG-AGGCCATTTTAGA-TG-CT-CGACTCCAA---AT-CAT---T---ATTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT---T---TTC--TTTT----TAATATGATCTGATA-ACCCACTTCAG-TTTTAT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTATA---TGAAAA--ATGTTCAAAAAATTCTAAGCAGTAGAAATGGGATTGAA--TAAA--TG-ATCAATATAATAAGGCCTAT---------CTTTATTAC-TGGGAATTTGGTCTGCTTCATATCT-------TGTTT--ACA-------TTGGCTCTGCTCC-TCAAACAGACTGAG-GTATGCTCTTACTCAG-TGTTTA-CA-TACAATTT---AGAAAAAATATTTAATACGCCTAC-AAGT-ATG--T-ATACAATTAA----TATATGTGATATA-ATGCGAATTTTTAAGGCCGT-CGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTT-GTCTTGACACAAAAAC-TA-AGTTC-AT-TTGGAACCAGTCAGGTG-TCTG-G-TATGTCTCCGT----ATC----------TGGGA---TGGTTAGAGATTATAT-TGTTCGTGTCTC-CAGTAT-CT--GGAT-GT-AGAGATTATATTGT-CTGTATATTCCAGT-AT-CTGAGATGGTAGAGATT
gi|3 : -ACT-ATGATATCACTGTATTTCC--TCAT--C--TG--A-----AAAACT-------TC-AACGC---------ACTAA-TT-------TTGTCTCCAGTA-AATA-----CA-AT---CAC-GA-CA--A-GA-A-A-A-----------GA------TTTTC--AAA-AC----CA---TGGGAATAAACCATAACTGATAAAAT----TAACAGA--CATAGCACGTGAAGTAAA-----TATT--TA-TGATATCGT--AAATTTCC-TA-G-TC-TCTTT-GGGCCACTTTAAA-TA-C-------CCTA---AT-C-T---TGAGCTTTT--CG-GAAGAAAACTTTGAGA-AAATC-AGT------------------------TATGA--GGATATCCCTACTTCAT-TTTTGC----GTCC-TGATTTCA-CAAATACATG--TACAATGTAC-TATTATCTAAG---GGAAAA--ATGTtatattgttctgtgttctcagtatctgggattggttagagattca
gi|4 : aaattgttgacgtttattaaggatgcattcttgtcactatgcatccagtttagatatgctccatatgagcatttactttctttatttataaaacacgtgagtcatggaacctttttttttctttttgtttttttttttacatatgtaatattaggaaagggggacctgaattacagggggacaatattttctgtgaTTATAT----------TCCGTC-T--T--TTTAA-----AAAAAA-------TG-AAAGC---------ACTGACTT-------TCGTTTCCAGTAGAACACTTTGAA-A---------G-CA--A-G--T-GCA-----------GA------TTTTC--AAA-ACT-T--------GGAATAAATCGTAACTGACAAAAT----TAACAGGG-TATA--GT---------------TTTG--TA-TGATATCTT--TAATTTGCGTT-C-TC-TCTTA-GCGCTTTTTTAAATTC-CT-T-AGT---A---AT--AC---T---TTCTT--AA-G--GAAAAAATTGA---AAATATGATTTCCT---CTC--TCTTACTGTAATATGgtggtggtaaagtgacagaaagtacgatcaacatcaatcgaggaaatttgttccaccttatcggtgcttaagcttagtcgcttgatatgcagatatgctcatacacatgtacatagtttttatgttgcaaattaaaaaaaagttgtgatggatcgcatgcgtatgcttatatgcaatttgtgtctgctttaatgaaatttt
gi|5 : aatcggatcgtttgttcatccttttggaatgctggattcttgtttcattcagacaaagtagatatgcaccacatgtgcatgtattgtctttagttatgcatcatgtagtcgtctggagccccattgctcttactgactgctgcaggctataatagttgtaacattgaatttggggaacatgaattacagtgaaatatattttcagtgaatcaactgcacagtcaGTAAAATATCA-A---TTCGTAT----------TC--CC-TAGC--TT--GTTTCAAAGATT-------TG-AAAGTGTTTAGTTTACTCAGTT-------TCCTCTCTAGTAAAAGG-----AA-AT---TAC-AA-GA--A-G--A-A-AT----------GC------TTTTA--AGA------TCA---TGGGTATAAATTATGACTGACAAAAG----TGACAGAA-TATA--G--------------------------GATATTTT--AAACTTCC-CT-T-TA-TCT----AACAATTCTAAA-TG-C----ACTACAATTAAT-GATGTCT---TTTCT--A------ATATCT-------AACTA-AATT--ATAGGTTG--TTTTC---TAATATGATTCTATATTCAAACTTTA--CTTTATTTCAATCA-CTA-TGTA-A-----CTTA--T-TA---CAC-TGGT-ATTATGAGGTGAAAA--A-ATTC-TGAAATACCAAGTAGTAGAAAT---------------AT--AAC--ATATAATAGCGACCATGAGCAAAAATCT-A--ACAAAGAAATTCGGTTTACCTCATATCTCATCTGC-G-TTTGCCAATTTTA-TTAGTTCTACTCTG-CAAACAAACtgat
gi|6 : AGTAATATA-TT-ACT-TT---AT----------TC--TT-T--CAAGT--G-----AAAAAAAGATGTTTG-AAAGT---------TCTGATTT-------TCGTATTTGATAGAATA-----AA-AT---TAC--------A-G--T-A-A-----------GAATGTTTTATTA--AAA-G-----TA---TGCGAATAAGCCGTAACTGGCAAA
gi|6 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaATTTT--GAAATTTC-TATC-TC-TTTTG-GAGTCATCTTAAC-TGTTT-T-ACCCCTA---ACATAT---T---GTTCTGAAG-G--GAGAAttttgaaatttctatctcttttggagtcatcttaactgttttacccctaacatattgttctgaagggagaaa
gi|7 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaagtaatatattactttattctttcaagtgaaaaaaagatgtttgaaagttctgattttcgtatttgatagaataaaattacagtaagaatgttttattaaaagtatgcgaataagccgtaactggcaaGTTAAATA-TC-ACT-TTAAAAT----------CC--CC-TTAC--TT--G-----AAAAAA----------AAA-----------ACTGAATTGCACGATTTGTCTCAAG-AAAACA-----AACAA---CAG-GG-CA--A------A-A-----------GA------TTT----ATA-A--ATTTA---TAGGGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACA--ATa
gi|8 : cttaagactgatctgatatgcactgtatgtgcctgtgcccactttcagttgtacaacatagaaccacatattactctatattatttacatctttaaaatttgatgggtgtgggaaacttgaataaaggggactatattttcggtaaaacaatggcgttAAATA-TC-ACT-TTAAAAT----------CC--CC-TTAC--TT--G-----AAAAAAAAAA---TG-AAATT---------GCCGACTT-------T-GTCTCAAGAAAAACA-----AA-CT---AACAGG-CA--A------A-A-----------GA------TTT----ATA-A--ATTTA---TAGGGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACA--ATt
gi|9 : atatgcactgtatgtgcctgtgtccctttcagttgtacaacatagaaacacatattactctatattattcactctttaaaatttgatgggtttggaaacttgaataaaggggattatattttcggtgaaacaatggcgttgtAAAATA-TG-TTTCTTTATTT----------CC--TCAT--T--TT--G-----AAAACA-------TT-TAAGT---------ACTGACTT-------TTGTGTCCAGCAGAACA-----AA-TT---CCC-AG-CA--tt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACCCTTCAGACGAATTAAATGATGTTCGCCATATGTACAGATATTTTTCTCAGTTATAAACATGCGAGTTATCAAGTCACACTATATCTTCTTATTTAGAGTCGTATCATTTGATGCTAAAATGGGGTGTGGAGAACTTGAAATATAAGGGACTATATTTTCAAAGCAATTATTGTAGTAAAATACTGTAGGATATCACCTTATT
Unaligned ( gi|15 ): TTCAGTTACGAATCATTGGTCCACATTACTCTTTCTTATATTACAATGGGTCTGTCGAGTTTTTGGGGACTATATTTTCGGTGGATGTGAATCGACGGCGTAGTGAAATTCAATTTATACCCTCATTCGAA
Unaligned ( gi|17 ): AAATCGTAATTTGCTATTGAGGATGCATTCTTTCGTTCAGACAAATTAGAAGATATGCACCATAAATGCATATATTTTTGTTTAATAATCAAACATAGTTCACGTAGTTG
Unaligned ( gi|19 ): TTTATGAGTGGTGGATTATTGTCATCATTTAGACAAATTAGAACTCACGCACCGTATGGGTATGTAT
Unaligned ( gi|20 ): AATTCTCGTCTCCAGTAAAACACATACATAAGAAGAAAAGATTTTCAGAACTATGGGGA
Alignments
lowQualScore : 1111 11111 22222222222 1111111111 111111111 111111111111 22222222222222222222 33333333 1111 888888888888888888888888 111111 111111 1111 222222222222 11111111 111 44444444444444444444 1 2222 1 1 4444444444444 11 1 1 111 11 111 4444444444444444 555555555 111 1 22222 1 55555555555 11 1 1 1 1 1 1 11 22222 33333 1 1 11 1 1 1 1 1 1 1 222 1 2222 4444444444 222 1 1 1 11 1 1 1 11 1 1
lowQualScore : 8888 5 444 55 4 99999 55 7777 44444444444 3 3333333333 333333333 2 0 77777 111111111111 33 44444444444444444444 1 88888 33333 11111111 3 0 0000 77 000000000000000000000000 55 2 222222 44 4 4 777777 0 1111 111111111111 55555555 0 888 8 88888888888888888888 777 1 9 8 0 1111 0 0 0000000000000 33 0 0 3 777 33 3 999 1 6 6666666666666666 777777777 333 3 0 66666 3 00000000000 7 77 7 5 3 7 3 3 3 7 7 6 2 7 7 44 44444 88888 3 3 6 33 7 3 7 5 5 5 5 5 5 111 5 3333 0000000000 000 5 1 5 5 88 5 5 5 1 1 77 5 5
lowQualScore : .... . ... .. . ..... .. .... ........... . .......... ......... . . ..... ............ .. .................... . ..... ..... ........ . . .... .. ........................ .. . ...... .. . . ...... . .... ............ ........ . ... . .................... ... . . . . .... . . ............. .. . . . ... .. . ... . . ................ ......... ... . . ..... . ........... . .. . . . . . . . . . . . . . .. ..... ..... . . . .. . . . . . . . . . ... . .... .......... ... . . . . .. . . . . . .. . .
lowQualScore : 1111 0 000 55 0 44444 00 7777 66666666666 3 8888888888 111111111 1 4 11111 666666666666 99 55555555555555555555 0 99999 00000 11111111 1 1 4444 88 888888888888888888888888 55 4 000000 66 4 4 555555 7 9999 222222222222 22222222 8 000 0 44444444444444444444 888 2 8 8 0 2222 0 0 5555555555555 88 0 0 2 555 88 2 000 0 7 0000000000000000 777777777 777 3 7 33333 3 77777777777 3 00 3 5 3 3 3 3 3 3 3 7 0 3 3 77 00000 00000 3 3 7 33 3 3 3 0 5 5 5 0 5 000 5 0000 5555555555 555 0 0 5 5 00 0 5 0 0 0 55 0 5
consensus : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-AT---CAC-GGCA--AG-A-A---A-----------GATTT-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---TN---TTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TG-ATCAATATAATAAGGCCTAT---C-----TTTATTACTGGGAA-TTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCC-NCAAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
Reference ( family-4670 ) : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-AT---CAC-GNCA--AG-N-A---A-----------GATNT-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---TN---TTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TGAAATTGAATCAATATAATAAGGCCTAT---C----TTTTATTACTGGGAA-TTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCC-CCAAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
gi|1 : AGTAAAATA-CATACT-TTTGTGTTC--TC-T--C--TT--G----AAA--T-------T-TAAA-GT----------CTAATT----------GTCTC-AGTAGAA-A-----AA-GTATACAA-GTCA--AC-G-ATTGG-----------GGGGT-CA--AAA-ACTACTTA---CAG-GAATACGTCGTAAGTGGCAGAAG----TAAAAAAG-T-TAA----TGA------TACTG-CA-TGATATTTTTGAAACTTAC-TA-A-T--TCGTG-AG--CATTTTAGC-TG-CTGCGACTCCA---AAT-GAT---TA---TTT---AGCG--GAAAACTTTGAGCTAAATA-AATT-----TTTCATTTCT----TAATAT-ATCTGTAACCCCTACTTCAGTTTTCAT----ATCAGTTA-TGCAAC-----CGTGAGTATA--GCACGTGTT-TT-AT---ATGAAAACCATGTTCAA-AAATTCTAAGAAGTAGAAATGGGATTGAAATTGAAATTGAATCA-TATAATAAGGCCTAT---C----TTTTATT-CTGGGGA-TTTCGTCTGCTTCATATC---TTTGT-TTTA-TA----T-TTGGC-CTGCTCCTCCAAACAG-CTGAGTGTATGCTCTTACTGC--TGTTTATCACTACAATTTTAGAAAAAAATATTTA-TA-GCTAACAAAGTAATGGCTAATACAATTAATCAGTATGTGTAATATACATG-GAATTTTTAAGGC-GTC-GAT-TTTGATGTATAAGATATAAAAAAAAA-TGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATA-CTCTGTGCAGATCACTTTGCTTGTGAGATGCTGATTAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTTTAGT--AGTCATACTGGGATGGTAGAGATT
gi|10 : cagt-TTTA-ATTC--TT-T--CCATT--G----AAAAAT-------TTGAAA-CT---------CCTGACT-------------------AGAACA-----AA-TT---GAC-AGCA--AG-G-A---A-----------AATAC-CCTCAAA-ACTAT--A---T---GAATAAATCTTGATTACCAAAAG----TAAAAGAC-TATA--------------------------TACTTT--GAACTTAT-CA-T-CCATCTTG-GGGCCATTTTAGA-TT-CT-CAACCCCA---AAT-ataattgtctggttcctagttgatggctatatgttcat
gi|12 : gctaatatgaggtatgtggaacttgaactagtagggaatacatttttagtggaatcaaagtatagtagactatcaatca--C--TT--G----AAAAA--------T-GAAA-GT---------ACTGACAT-------TAATCTCCAGTAAAACA-----AA-AT---CAA-ATCG--AG-G-A---AATATTTTCAATGATCT-CC--AAATATTATCCAAATTAG-GACTAAATCGTAACTGGC-AAAGTATCTAACAGA--TAT-A----TGA------ctt
gi|13 : -------T-GAAA-AT---------ACATACTT-------TTGTTTCCAGTAAAACA-----AA-AT---GAC-TTCATGAA-A-A---A-----------AATTT--C--AAA-AC----TA---TAG-GAATTGGTCTTCATAGATCAAAG----T---AGGA-TAT---------------------------TATTTT--GAATTTAC-CA-C-CC-TCTCG-GTGCCATTTTGTA-TG-CT-C-aaattcaattcgaactcattagatcaagtcg
gi|14 : atttTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGC-TACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAAtacctcggat
gi|16 : GAACA-----AA-A-----GT-GCAA--AT-A-A---A-----------GACCT-TC--AAT-ACTAT-------GA-GAAT--GTCTTAACTGGTAA--G----TGACAGAA-TAT------TGAAAATT-TACT-----TGATATTTT--GGACT-------G-TT-CCTTGTAGGACATTTTAGA-TG-CT-
gi|18 : cccacgtT-CC--AAA-ACTATT-------G-GAA-AAGTCGTAACTGACGAAAGT---TATCAGAGTTATAA----AAA------T-TTGGCATTGATATCTT--GAACTTGC-
gi|2 : AGTAAAATA-CA-ACT-TTTGTGTCC--TC-T--C--TT--G----AAAATC-------T-TAAA-GT---------ACTAACTT-------TTGTCTCCAGTAGAACA-----AA-AT---CAT-ACCA--AG-TCA---A-----------GATGT-CA--AAA-ACTACTTA---CAG-GAATAAGTCGTAACTGGCAGAAG----TAACAAAG-TATAA----TGA------TACTG-CA-TGATATTTT--GAACTTAC-TA-AATC-TCGTG-AGGCCATTTTAGA-TG-CT-CGACTCCA---AAT-CAT---TA---TTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCTGATAACCC-ACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---ATGAAAA--ATGTTCAAAAAATTCTAAGCAGTAGAAATGGGATTGAA--TAAA--TG-ATCAATATAATAAGGCCTAT---C-----TTTATTACTGGGAA-TTTGGTCTGCTTCATATC---T-TGT-TT----A----CATTGGCTCTGCTCC-TCAAACAGACTGAG-GTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AG-AAAAAATATTTAATACGCCTAC-AAGT-ATG--T-ATACAATTAA----TATATGTGATATA-ATGCGAATTTTTAAGGCCGT-CGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTT-GTCTTGACACAAAAAC-TA-AGTTC-AT-TTGGAACCAGTCAGGTG-TCTG-G-TATGTCTCCGT----ATC----------TGGGA---TGGTTAGAGATTATAT-TGTTCGTGTCTC-CAGTAT-CT--GGAT-GT-AGAGATTATATTGT-CTGTATATTCCAGT-AT-CTGAGATGGTAGAGATT
gi|20 : ATTC-------TCGTCTCCAGTAAAACA-----CA-TA---CAT-AAGA--AGAA-A---A-----------GATTT-TC--AGA-ACTATtatattgttctgtgttctcagtatctgggattggttagagattca
gi|3 : aTATTTCC--TC-A--T--CT--G----AAAAAC-------T-TCAACGC---------ACTAATTT-------T-GTCTCCAGTA-AATA-----CA-AT---CAC-GACA--AG-A-A---AA----------GATTT-TC--AAA-ACCAT-------GG-GAATAAACCATAACTGATAAAAT----TAACAGA--CATAGCACGTGAAGTAAATATT--TA-TGATATCGT--AAATTTCC-TA-G-TC-TCTTT-GGGCCACTTTAAA-TA-C-------CCT---AAT-C-T---TGAGCTTTT--CG-GAAGAAAACTTTGAGA-AAATC-AGT-----------------------TATGA--GGATATCCCTACTTCATTTTT-GC----GTCC-TGATTTCA-CAAATACATG--TACAATGTAC-TATTATCTAA---GGGAAAA--ATGTgggga
gi|4 : aaattgttgacgtttattaaggatgcattcttgtcactatgcatccagtttagatatgctccatatgagcatttactttctttatttataaaacacgtgagtcatggaacctttttttttctttttgtttttttttttacatatgtaatattaggaaagggggacctgaattacagggggacaatattttctgtgaactatgatatcactgTTATATTCCGTC-T--T--TTTAA----AAAAAA-------T-GAAA-GC---------ACTGACTT-------TCGTTTCCAGTAGAACACTTTGAA-A---------GCA--AG-T-GC--A-----------GATTT-TC--AAA-ACT-T--------G-GAATAAATCGTAACTGACAAAAT----TAACAGGG-TATAG----T--------TTTG--TA-TGATATCTT--TAATTTGCGTT-C-TC-TCTTA-GCGCTTTTTTAAATTC-CT-T-AGT------AAT--AC---TT---TCTT--AA-G--GAAAAAATTGA---AAATATGATTTCC--TCTC--TCTTACTGTAATATGgtggtggtaaagtgacagaaagtacgatcaacatcaatcgaggaaatttgttccaccttatcggtgcttaagcttagtcgcttgatatgcagatatgctcatacacatgtacatagtttttatgttgcaaattaaaaaaaagttgtgatggatcgcatgcgtatgcttatatgcaatttgtgtctgctttaatgaaatttt
gi|5 : aatcggatcgtttgttcatccttttggaatgctggattcttgtttcattcagacaaagtagatatgcaccacatgtgcatgtattgtctttagttatgcatcatgtagtcgtctggagccccattgctcttactgactgctgcaggctataatagttgtaacattgaatttggggaacatgaattacagtgaaatatattttcagtgaatcaactgcacagtcaGTAAAATATCA-A---TTCGTATTC--CC-TAGC--TT--GTTTCAAAGAT-------TTGAAA-GTGTTTAGTTTACTCAGTT-------TCCTCTCTAGTAAAAGG-----AA-AT---TAC-AAGA--AG-A-A---A-----------TGCTT-TT--AAG-A----TCA---TGG-GTATAAATTATGACTGACAAAAG----TGACAGAA-TATAG-----------------------GATATTTT--AAACTTCC-CT-T-TA-TCT----AACAATTCTAAA-TG----C-ACTACAATTAAT-GATGTCTT---TTCT--A------ATATCT-------AACTA-AATTATAGGTTGT--TTTC----TAATATGATTCTATATTCAAACTTTA-CTTT-ATTTCAATCA-CTA-TGTA-A-----C-T---TATT--ACAC-TGGT-ATTATGAGGTGAAAA--A-ATTC-TGAAATACCAAGTAGTAGAAAT--------A--TAA--------C-ATATAATAGCGACCATGAGCAAAAATCTA--ACAAAGAAATTCGGTTTACCTCATATCTCATCTGCGTTTGCCAATTTTATTAGTTCTACTCT-GCAAACAAACtgat
gi|6 : AGTAATATA-TT-ACT-TT---ATTC--TT-T--CAAGT--G----AAAAAAAGATGTTT-GAAA-GT---------TCTGATTT-------TCGTATTTGATAGAATA-----AA-AT---TAC-AGTA--AG-A-A---T-----------GTTTTATT--AAA-AGTAT--------GCGAATAAGCCGTAACTGGCAAA
gi|6 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaATTTT--GAAATTTC-TATC-TC-TTTTG-GAGTCATCTTAAC-TGTTT-T-ACCCCT---AACATAT---TG---TTCTGAAG-G--GAGAAttttgaaatttctatctcttttggagtcatcttaactgttttacccctaacatattgttctgaagggagaaa
gi|7 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaagtaatatattactttattctttcaagtgaaaaaaagatgtttgaaagttctgattttcgtatttgatagaataaaattacagtaagaatgttttattaaaagtatgcgaataagccgtaactggcaaGTTAAATA-TC-ACT-TTAAAATCC--CC-TTAC--TT--G----AAAAAA----------AAA------------ACTGAATTGCACGATTTGTCTCAAG-AAAACA-----AACAA---CAG-GGCA--A----A---A-----------GATTT-AT--AAA-----TTTA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Ta
gi|8 : cttaagactgatctgatatgcactgtatgtgcctgtgcccactttcagttgtacaacatagaaccacatattactctatattatttacatctttaaaatttgatgggtgtgggaaacttgaataaaggggactatattttcggtaaaacaatggcgttAAATA-TC-ACT-TTAAAATCC--CC-TTAC--TT--G----AAAAAAAAAA---T-GAAA-TT---------GCCGACTT-------T-GTCTCAAGAAAAACA-----AA-CT---AACAGGCA--A----A---A-----------GATTT-AT--AAA-----TTTA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Tt
gi|9 : atatgcactgtatgtgcctgtgtccctttcagttgtacaacatagaaacacatattactctatattattcactctttaaaatttgatgggtttggaaacttgaataaaggggattatattttcggtgaaacaatggcgttgtAAAATA-TG-TTTCTTTATTTCC--TCAT--T--TT--G----AAAACA-------T-TTAA-GT---------ACTGACTT-------TTGTGTCCAGCAGAACA-----AA-TT---CCC-AGCA--tt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACCCTTCAGACGAATTAAATGATGTTCGCCATATGTACAGATATTTTTCTCAGTTATAAACATGCGAGTTATCAAGTCACACTATATCTTCTTATTTAGAGTCGTATCATTTGATGCTAAAATGGGGTGTGGAGAACTTGAAATATAAGGGACTATATTTTCAAAGCAATTATTGTAGTAAAATACTGTAGGATATCACCTTATT
Unaligned ( gi|15 ): TTCAGTTACGAATCATTGGTCCACATTACTCTTTCTTATATTACAATGGGTCTGTCGAGTTTTTGGGGACTATATTTTCGGTGGATGTGAATCGACGGCGTAGTGAAATTCAATTTATACCCTCATTCGAA
Unaligned ( gi|17 ): AAATCGTAATTTGCTATTGAGGATGCATTCTTTCGTTCAGACAAATTAGAAGATATGCACCATAAATGCATATATTTTTGTTTAATAATCAAACATAGTTCACGTAGTTG
Unaligned ( gi|19 ): TTTATGAGTGGTGGATTATTGTCATCATTTAGACAAATTAGAACTCACGCACCGTATGGGTATGTAT
Alignments
lowQualScore : 1111 11111 22222222222 1111111111 111111111 2222222222222222222222222222222222 33333333 1111 888888888888888888888888 111111 111111 1111 222222222222 11111111 111 44444444444444444444 1 2222 1 1 4444444444444 11 1 1 111 11 111 11 33333333333 444444444 2222222 22222 1 55555555555 1 1 1 1 1 1 1 11 22222 33333 1 1 11 1 1 1 1 1 1 1 222 1 2222 4444444444 222 1 1 1 11 1 1 1 11 1 1
lowQualScore : 8888 5 444 55 4 99999 55 7777 44444444444 3 3333333333 333333333 2 0 77777 3333333333333333333333333333333333 999999999999 33333 11111111 3 0 0000 77 000000000000000000000000 55 2 222222 44 4 4 777777 0 1111 111111111111 55555555 0 888 8 88888888888888888888 777 1 9 8 0 1111 0 0 0000000000000 33 0 0 3 777 33 3 999 1 6 88 99999999999 666666666 1111111 0 66666 3 00000000000 7 1 3 7 5 3 7 3 3 3 7 7 6 2 7 7 44 44444 88888 3 3 6 33 7 3 7 5 5 5 5 5 5 111 5 3333 0000000000 000 5 1 5 5 88 5 5 5 1 1 77 5 5
lowQualScore : .... . ... .. . ..... .. .... ........... . .......... ......... . . ..... .................................. ............ ..... ........ . . .... .. ........................ .. . ...... .. . . ...... . .... ............ ........ . ... . .................... ... . . . . .... . . ............. .. . . . ... .. . ... . . .. ........... ......... ....... . ..... . ........... . . . . . . . . . . . . . . . . .. ..... ..... . . . .. . . . . . . . . . ... . .... .......... ... . . . . .. . . . . . .. . .
lowQualScore : 1111 0 000 55 0 44444 00 7777 66666666666 3 8888888888 111111111 1 4 11111 4444444444444444444444444444444444 222222222222 00000 11111111 1 1 4444 88 888888888888888888888888 55 4 000000 66 4 4 555555 7 9999 222222222222 22222222 8 000 0 44444444444444444444 888 2 8 8 0 2222 0 0 5555555555555 88 0 0 2 555 88 2 000 0 7 33 00000000000 777777777 3333333 7 33333 3 77777777777 3 0 3 3 5 3 3 3 3 3 3 3 7 0 3 3 77 00000 00000 3 3 7 33 3 3 3 0 5 5 5 0 5 000 5 0000 5555555555 555 0 0 5 5 00 0 5 0 0 0 55 0 5
consensus : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-ATCA---C-G-GCA--AG--AAA----------GATT------T-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
Reference ( family-4670 ) : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-ATCA---C-G-GCA--AG--AAA----------GATT------T-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCNC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
gi|1 : AGTAAAATA-CATACT-TTTGTGTTC--TC-T--C--TT--G----AAA--T-------T-TAAA-GT----------CTAATT----------GTCTC-AGTAGAA-A-----AA-GT-A---T-A--CA--AGTCAAC----------GATTGGGGGGT-CA--AAA-ACTACTTA---CAG-GAATACGTCGTAAGTGGCAGAAG----TAAAAAAG-T-TAA----TGA------TACTG-CA-TGATATTTTTGAAACTTAC-TA-A-T--TCGTG-AG--CATTTTAGC-TG-CTGCGACTCCA---AAT-GAT---T---ATTT---AGCG--GAAAACTTTGAGCTAAATA-AATT-----TTTCATTTCT----TAATAT-ATCTGTAACCCCTACTTCAGTTTTCAT----ATCAGTTA-TGCAAC-----CGTGAGTATA--GCACGTGTT-TT-AT---ATGAAAACCATGTTCAA-AAATTCTAAGAAGTAGAAATGGGATTGAAATTGAAATTGAATCA-TATAATAAGGCCTAT---C-----TTTTATT-C-TGGGGATTTCGTCTGCTTCATATC---TTTGT-TTTA-TA----T-TTGGC-CTGCTCCTCCAAACAG-CTGAGTGTATGCTCTTACTGC--TGTTTATCACTACAATTTTAGAAAAAAATATTTA-TA-GCTAACAAAGTAATGGCTAATACAATTAATCAGTATGTGTAATATACATG-GAATTTTTAAGGC-GTC-GAT-TTTGATGTATAAGATATAAAAAAAAA-TGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATA-CTCTGTGCAGATCACTTTGCTTGTGAGATGCTGATTAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTTTAGT--AGTCATACTGGGATGGTAGAGATT
gi|10 : cagt-TTTA-ATTC--TT-T--CCATT--G----AAAAAT-------TTGAAA-CT---------CCTGACT-------------------AGAACA-----AA-TTGA---C-A-GCA--AG--GAA----------AATA------C-CCTCAAA-ACTAT--A---T---GAATAAATCTTGATTACCAAAAG----TAAAAGAC-TATA--------------------------TACTTT--GAACTTAT-CA-T-CCATCTTG-GGGCCATTTTAGA-TT-CT-CAACCCCA---AAT-ataattgtctggttcctagttgatggctatatgttcat
gi|12 : gctaatatgaggtatgtggaacttgaactagtagggaatacatttttagtggaatcaaagtatagtagactatcaatca--C--TT--G----AAAAA--------T-GAAA-GT---------ACTGACAT-------TAATCTCCAGTAAAACA-----AA-ATCAAATC-G---A--GG--AAATATTTTCAATGATC------T-CC--AAATATTATCCAAATTAG-GACTAAATCGTAACTGGC-AAAGTATCTAACAGA--TAT-A----TGA------ctt
gi|13 : -------T-GAAA-AT---------ACATACTT-------TTGTTTCCAGTAAAACA-----AA-ATGA---C-T-TCATGAA--AAA----------AATT------T--C--AAA-AC----TA---TAG-GAATTGGTCTTCATAGATCAAAG----T---AGGA-TAT---------------------------TATTTT--GAATTTAC-CA-C-CC-TCTCG-GTGCCATTTTGTA-TG-CT-C-aaattcaattcgaactcattagatcaagtcg
gi|14 : atttTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGC-TACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAAtacctcggat
gi|16 : GAACA-----AA-A--------GTGCA--AAT-AAA----------GACC------T-TC--AAT-ACTAT-------GA-GAAT--GTCTTAACTGGTAA--G----TGACAGAA-TAT------TGAAAATT-TACT-----TGATATTTT--GGACT-------G-TT-CCTTGTAGGACATTTTAGA-TG-CT-
gi|18 : cccacgt------T-CC--AAA-ACTATT-------G-GAA-AAGTCGTAACTGACGAAAGT---TATCAGAGTTATAA----AAA------T-TTGGCATTGATATCTT--GAACTTGC-
gi|2 : AGTAAAATA-CA-ACT-TTTGTGTCC--TC-T--C--TT--G----AAAATC-------T-TAAA-GT---------ACTAACTT-------TTGTCTCCAGTAGAACA-----AA-ATCA---T-A-CCA--AGT-CAA----------GATG------T-CA--AAA-ACTACTTA---CAG-GAATAAGTCGTAACTGGCAGAAG----TAACAAAG-TATAA----TGA------TACTG-CA-TGATATTTT--GAACTTAC-TA-AATC-TCGTG-AGGCCATTTTAGA-TG-CT-CGACTCCA---AAT-CAT---T---ATTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCTGATAACCC-ACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---ATGAAAA--ATGTTCAAAAAATTCTAAGCAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTTGGTCTGCTTCATATC---T-TGT-TT----A----CATTGGCTCTGCTCCTC-AAACAGACTGAG-GTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AG-AAAAAATATTTAATACGCCTAC-AAGT-ATG--T-ATACAATTAA----TATATGTGATATA-ATGCGAATTTTTAAGGCCGT-CGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTT-GTCTTGACACAAAAAC-TA-AGTTC-AT-TTGGAACCAGTCAGGTG-TCTG-G-TATGTCTCCGT----ATC----------TGGGA---TGGTTAGAGATTATAT-TGTTCGTGTCTC-CAGTAT-CT--GGAT-GT-AGAGATTATATTGT-CTGTATATTCCAGT-AT-CTGAGATGGTAGAGATT
gi|20 : ATTC-------TCGTCTCCAGTAAAACA-----CA-TACA---T-A-AGA--AGA-AAA----------GATT------T-TC--AGA-ACTATtatattgttctgtgttctcagtatctgggattggttagagattca
gi|3 : aTATTTCC--TC-A--T--CT--G----AAAAAC-------T-TCAACGC---------ACTAATTT-------T-GTCTCCAGTA-AATA-----CA-ATCA---C-G-ACA--AG--AAAA---------GATT------T-TC--AAA-ACCAT-------GG-GAATAAACCATAACTGATAAAAT----TAACAGA--CATAGCACGTGAAGTAAATATT--TA-TGATATCGT--AAATTTCC-TA-G-TC-TCTTT-GGGCCACTTTAAA-TA-C-------CCT---AAT-C-T---TGAGCTTTT--CG-GAAGAAAACTTTGAGA-AAATC-AGT-----------------------TATGA--GGATATCCCTACTTCATTTTT-GC----GTCC-TGATTTCA-CAAATACATG--TACAATGTAC-TATTATCTAA---GGGAAAA--ATGTgggga
gi|4 : aaattgttgacgtttattaaggatgcattcttgtcactatgcatccagtttagatatgctccatatgagcatttactttctttatttataaaacacgtgagtcatggaacctttttttttctttttgtttttttttttacatatgtaatattaggaaagggggacctgaattacagggggacaatattttctgtgaactatgatatcactgTTATATTCCGTC-T--T--TTTAA----AAAAAA-------T-GAAA-GC---------ACTGACTT-------TCGTTTCCAGTAGAACACTTTGAA-A----------GCA--AGT-GCA----------GATT------T-TC--AAA-ACT-T--------G-GAATAAATCGTAACTGACAAAAT----TAACAGGG-TATAG----T--------TTTG--TA-TGATATCTT--TAATTTGCGTT-C-TC-TCTTA-GCGCTTTTTTAAATTC-CT-T-AGT------AAT--AC---T---TTCTT--AA-G--GAAAAAATTGA---AAATATGATTTCC--TCTC--TCTTACTGTAATATGgtggtggtaaagtgacagaaagtacgatcaacatcaatcgaggaaatttgttccaccttatcggtgcttaagcttagtcgcttgatatgcagatatgctcatacacatgtacatagtttttatgttgcaaattaaaaaaaagttgtgatggatcgcatgcgtatgcttatatgcaatttgtgtctgctttaatgaaatttt
gi|5 : aatcggatcgtttgttcatccttttggaatgctggattcttgtttcattcagacaaagtagatatgcaccacatgtgcatgtattgtctttagttatgcatcatgtagtcgtctggagccccattgctcttactgactgctgcaggctataatagttgtaacattgaatttggggaacatgaattacagtgaaatatattttcagtgaatcaactgcacagtcaGTAAAATATCA-A---TTCGTATTC--CC-TAGC--TT--GTTTCAAAGAT-------TTGAAA-GTGTTTAGTTTACTCAGTT-------TCCTCTCTAGTAAAAGG-----AA-ATTA---C-A-AGA--AG--AAA----------TGCT------T-TT--AAG-A----TCA---TGG-GTATAAATTATGACTGACAAAAG----TGACAGAA-TATAG-----------------------GATATTTT--AAACTTCC-CT-T-TA-TCT----AACAATTCTAAA-TG----C-ACTACAATTAAT-GATGTCT---TTTCT--A------ATATCT-------AACTA-AATTATAGGTTGT--TTTC----TAATATGATTCTATATTCAAACTTTA-CTTT-ATTTCAATCA-CTA-TGTA-A-----C-T---TATT--ACAC-TGGT-ATTATGAGGTGAAAA--A-ATTC-TGAAATACCAAGTAGTAGAAAT--------A--TAA--------C-ATATAATAGCGACCATGAGCAAAAATCT-A--ACAAAGAAATTCGGTTTACCTCATATCTCATCTGCGTTTGCCAATTTTATTAGTTCTACTCTGC-AAACAAACtgat
gi|6 : AGTAATATA-TT-ACT-TT---ATTC--TT-T--CAAGT--G----AAAAAAAGATGTTT-GAAA-GT---------TCTGATTT-------TCGTATTTGATAGAATA-----AA-ATTA---C-A-GTA--AG--AAT----------GTTT------TATT--AAA-AGTAT--------GCGAATAAGCCGTAACTGGCAAA
gi|6 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaATTTT--GAAATTTC-TATC-TC-TTTTG-GAGTCATCTTAAC-TGTTT-T-ACCCCT---AACATAT---T---GTTCTGAAG-G--GAGAAttttgaaatttctatctcttttggagtcatcttaactgttttacccctaacatattgttctgaagggagaaa
gi|7 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaagtaatatattactttattctttcaagtgaaaaaaagatgtttgaaagttctgattttcgtatttgatagaataaaattacagtaagaatgttttattaaaagtatgcgaataagccgtaactggcaaGTTAAATA-TC-ACT-TTAAAATCC--CC-TTAC--TT--G----AAAAAA----------AAA------------ACTGAATTGCACGATTTGTCTCAAG-AAAACA-----AACAACA---G-G-GCA--A----AA----------GATT------T-AT--AAA-----TTTA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Ta
gi|8 : cttaagactgatctgatatgcactgtatgtgcctgtgcccactttcagttgtacaacatagaaccacatattactctatattatttacatctttaaaatttgatgggtgtgggaaacttgaataaaggggactatattttcggtaaaacaatggcgttAAATA-TC-ACT-TTAAAATCC--CC-TTAC--TT--G----AAAAAAAAAA---T-GAAA-TT---------GCCGACTT-------T-GTCTCAAGAAAAACA-----AA-CTAA---CAG-GCA--A----AA----------GATT------T-AT--AAA-----TTTA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Tt
gi|9 : atatgcactgtatgtgcctgtgtccctttcagttgtacaacatagaaacacatattactctatattattcactctttaaaatttgatgggtttggaaacttgaataaaggggattatattttcggtgaaacaatggcgttgtAAAATA-TG-TTTCTTTATTTCC--TCAT--T--TT--G----AAAACA-------T-TTAA-GT---------ACTGACTT-------TTGTGTCCAGCAGAACA-----AA-TTCC---C-A-GCA--tt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACCCTTCAGACGAATTAAATGATGTTCGCCATATGTACAGATATTTTTCTCAGTTATAAACATGCGAGTTATCAAGTCACACTATATCTTCTTATTTAGAGTCGTATCATTTGATGCTAAAATGGGGTGTGGAGAACTTGAAATATAAGGGACTATATTTTCAAAGCAATTATTGTAGTAAAATACTGTAGGATATCACCTTATT
Unaligned ( gi|15 ): TTCAGTTACGAATCATTGGTCCACATTACTCTTTCTTATATTACAATGGGTCTGTCGAGTTTTTGGGGACTATATTTTCGGTGGATGTGAATCGACGGCGTAGTGAAATTCAATTTATACCCTCATTCGAA
Unaligned ( gi|17 ): AAATCGTAATTTGCTATTGAGGATGCATTCTTTCGTTCAGACAAATTAGAAGATATGCACCATAAATGCATATATTTTTGTTTAATAATCAAACATAGTTCACGTAGTTG
Unaligned ( gi|19 ): TTTATGAGTGGTGGATTATTGTCATCATTTAGACAAATTAGAACTCACGCACCGTATGGGTATGTAT
Alignments
lowQualScore : 1111 11111 22222222222 1111111111 111111111 2222222222222222222222222222222222 33333333 1111 888888888888888888888888 111111 111111 1111 222222222222 11111111 111 44444444444444444444 1 2222 1 1 4444444444444 11 1 1 111 11 111 11 33333333333 444444444 2222222 22222 1 55555555555 1 1 1 1 1 1 1 11 22222 33333 1 1 11 1 1 1 1 1 1 1 222 1 2222 4444444444 222 1 1 1 11 1 1 1 11 1 1
lowQualScore : 8888 5 444 55 4 99999 55 7777 44444444444 3 3333333333 333333333 2 0 77777 3333333333333333333333333333333333 999999999999 33333 11111111 3 0 0000 77 000000000000000000000000 55 2 222222 44 4 4 777777 0 1111 111111111111 55555555 0 888 8 88888888888888888888 777 1 9 8 0 1111 0 0 0000000000000 33 0 0 3 777 33 3 999 1 6 88 99999999999 666666666 1111111 0 66666 3 00000000000 7 3 7 5 3 7 3 3 3 7 7 6 2 7 7 44 44444 88888 3 3 6 33 7 3 7 5 5 5 5 5 5 111 5 3333 0000000000 000 5 1 5 5 88 5 5 5 1 1 77 5 5
lowQualScore : .... . ... .. . ..... .. .... ........... . .......... ......... . . ..... .................................. ............ ..... ........ . . .... .. ........................ .. . ...... .. . . ...... . .... ............ ........ . ... . .................... ... . . . . .... . . ............. .. . . . ... .. . ... . . .. ........... ......... ....... . ..... . ........... . . . . . . . . . . . . . . . .. ..... ..... . . . .. . . . . . . . . . ... . .... .......... ... . . . . .. . . . . . .. . .
lowQualScore : 1111 0 000 55 0 44444 00 7777 66666666666 3 8888888888 111111111 1 4 11111 4444444444444444444444444444444444 222222222222 00000 11111111 1 1 4444 88 888888888888888888888888 55 4 000000 66 4 4 555555 7 9999 222222222222 22222222 8 000 0 44444444444444444444 888 2 8 8 0 2222 0 0 5555555555555 88 0 0 2 555 88 2 000 0 7 33 00000000000 777777777 3333333 7 33333 3 77777777777 3 3 3 5 3 3 3 3 3 3 3 7 0 3 3 77 00000 00000 3 3 7 33 3 3 3 0 5 5 5 0 5 000 5 0000 5555555555 555 0 0 5 5 00 0 5 0 0 0 55 0 5
consensus : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-ATCA---C-G-GCA--AG--AAA----------GATT------T-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
Reference ( family-4670 ) : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-ATCA---C-G-GCA--AG--AAA----------GATT------T-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
gi|1 : AGTAAAATA-CATACT-TTTGTGTTC--TC-T--C--TT--G----AAA--T-------T-TAAA-GT----------CTAATT----------GTCTC-AGTAGAA-A-----AA-GT-A---T-A--CA--AGTCAAC----------GATTGGGGGGT-CA--AAA-ACTACTTA---CAG-GAATACGTCGTAAGTGGCAGAAG----TAAAAAAG-T-TAA----TGA------TACTG-CA-TGATATTTTTGAAACTTAC-TA-A-T--TCGTG-AG--CATTTTAGC-TG-CTGCGACTCCA---AAT-GAT---T---ATTT---AGCG--GAAAACTTTGAGCTAAATA-AATT-----TTTCATTTCT----TAATAT-ATCTGTAACCCCTACTTCAGTTTTCAT----ATCAGTTA-TGCAAC-----CGTGAGTATA--GCACGTGTT-TT-AT---ATGAAAACCATGTTCAA-AAATTCTAAGAAGTAGAAATGGGATTGAAATTGAAATTGAATCA-TATAATAAGGCCTAT---C-----TTTTATT-C-TGGGGATTTCGTCTGCTTCATATC---TTTGT-TTTA-TA----T-TTGGC-CTGCTCCTCCAAACAG-CTGAGTGTATGCTCTTACTGC--TGTTTATCACTACAATTTTAGAAAAAAATATTTA-TA-GCTAACAAAGTAATGGCTAATACAATTAATCAGTATGTGTAATATACATG-GAATTTTTAAGGC-GTC-GAT-TTTGATGTATAAGATATAAAAAAAAA-TGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATA-CTCTGTGCAGATCACTTTGCTTGTGAGATGCTGATTAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTTTAGT--AGTCATACTGGGATGGTAGAGATT
gi|10 : cagt-TTTA-ATTC--TT-T--CCATT--G----AAAAAT-------TTGAAA-CT---------CCTGACT-------------------AGAACA-----AA-TTGA---C-A-GCA--AG--GAA----------AATA------C-CCTCAAA-ACTAT--A---T---GAATAAATCTTGATTACCAAAAG----TAAAAGAC-TATA--------------------------TACTTT--GAACTTAT-CA-T-CCATCTTG-GGGCCATTTTAGA-TT-CT-CAACCCCA---AAT-ataattgtctggttcctagttgatggctatatgttcat
gi|12 : gctaatatgaggtatgtggaacttgaactagtagggaatacatttttagtggaatcaaagtatagtagactatcaatca--C--TT--G----AAAAA--------T-GAAA-GT---------ACTGACAT-------TAATCTCCAGTAAAACA-----AA-ATCAAATC-G---A--GG--AAATATTTTCAATGATC------T-CC--AAATATTATCCAAATTAG-GACTAAATCGTAACTGGC-AAAGTATCTAACAGA--TAT-A----TGA------ctt
gi|13 : -------T-GAAA-AT---------ACATACTT-------TTGTTTCCAGTAAAACA-----AA-ATGA---C-T-TCATGAA--AAA----------AATT------T--C--AAA-AC----TA---TAG-GAATTGGTCTTCATAGATCAAAG----T---AGGA-TAT---------------------------TATTTT--GAATTTAC-CA-C-CC-TCTCG-GTGCCATTTTGTA-TG-CT-C-aaattcaattcgaactcattagatcaagtcg
gi|14 : atttTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGC-TACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAAtacctcggat
gi|16 : GAACA-----AA-A--------GTGCA--AAT-AAA----------GACC------T-TC--AAT-ACTAT-------GA-GAAT--GTCTTAACTGGTAA--G----TGACAGAA-TAT------TGAAAATT-TACT-----TGATATTTT--GGACT-------G-TT-CCTTGTAGGACATTTTAGA-TG-CT-
gi|18 : cccacgt------T-CC--AAA-ACTATT-------G-GAA-AAGTCGTAACTGACGAAAGT---TATCAGAGTTATAA----AAA------T-TTGGCATTGATATCTT--GAACTTGC-
gi|2 : AGTAAAATA-CA-ACT-TTTGTGTCC--TC-T--C--TT--G----AAAATC-------T-TAAA-GT---------ACTAACTT-------TTGTCTCCAGTAGAACA-----AA-ATCA---T-A-CCA--AGT-CAA----------GATG------T-CA--AAA-ACTACTTA---CAG-GAATAAGTCGTAACTGGCAGAAG----TAACAAAG-TATAA----TGA------TACTG-CA-TGATATTTT--GAACTTAC-TA-AATC-TCGTG-AGGCCATTTTAGA-TG-CT-CGACTCCA---AAT-CAT---T---ATTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCTGATAACCC-ACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---ATGAAAA--ATGTTCAAAAAATTCTAAGCAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTTGGTCTGCTTCATATC---T-TGT-TT----A----CATTGGCTCTGCTCCTC-AAACAGACTGAG-GTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AG-AAAAAATATTTAATACGCCTAC-AAGT-ATG--T-ATACAATTAA----TATATGTGATATA-ATGCGAATTTTTAAGGCCGT-CGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTT-GTCTTGACACAAAAAC-TA-AGTTC-AT-TTGGAACCAGTCAGGTG-TCTG-G-TATGTCTCCGT----ATC----------TGGGA---TGGTTAGAGATTATAT-TGTTCGTGTCTC-CAGTAT-CT--GGAT-GT-AGAGATTATATTGT-CTGTATATTCCAGT-AT-CTGAGATGGTAGAGATT
gi|20 : ATTC-------TCGTCTCCAGTAAAACA-----CA-TACA---T-A-AGA--AGA-AAA----------GATT------T-TC--AGA-ACTATtatattgttctgtgttctcagtatctgggattggttagagattca
gi|3 : aTATTTCC--TC-A--T--CT--G----AAAAAC-------T-TCAACGC---------ACTAATTT-------T-GTCTCCAGTA-AATA-----CA-ATCA---C-G-ACA--AG--AAAA---------GATT------T-TC--AAA-ACCAT-------GG-GAATAAACCATAACTGATAAAAT----TAACAGA--CATAGCACGTGAAGTAAATATT--TA-TGATATCGT--AAATTTCC-TA-G-TC-TCTTT-GGGCCACTTTAAA-TA-C-------CCT---AAT-C-T---TGAGCTTTT--CG-GAAGAAAACTTTGAGA-AAATC-AGT-----------------------TATGA--GGATATCCCTACTTCATTTTT-GC----GTCC-TGATTTCA-CAAATACATG--TACAATGTAC-TATTATCTAA---GGGAAAA--ATGTgggga
gi|4 : aaattgttgacgtttattaaggatgcattcttgtcactatgcatccagtttagatatgctccatatgagcatttactttctttatttataaaacacgtgagtcatggaacctttttttttctttttgtttttttttttacatatgtaatattaggaaagggggacctgaattacagggggacaatattttctgtgaactatgatatcactgTTATATTCCGTC-T--T--TTTAA----AAAAAA-------T-GAAA-GC---------ACTGACTT-------TCGTTTCCAGTAGAACACTTTGAA-A----------GCA--AGT-GCA----------GATT------T-TC--AAA-ACT-T--------G-GAATAAATCGTAACTGACAAAAT----TAACAGGG-TATAG----T--------TTTG--TA-TGATATCTT--TAATTTGCGTT-C-TC-TCTTA-GCGCTTTTTTAAATTC-CT-T-AGT------AAT--AC---T---TTCTT--AA-G--GAAAAAATTGA---AAATATGATTTCC--TCTC--TCTTACTGTAATATGgtggtggtaaagtgacagaaagtacgatcaacatcaatcgaggaaatttgttccaccttatcggtgcttaagcttagtcgcttgatatgcagatatgctcatacacatgtacatagtttttatgttgcaaattaaaaaaaagttgtgatggatcgcatgcgtatgcttatatgcaatttgtgtctgctttaatgaaatttt
gi|5 : aatcggatcgtttgttcatccttttggaatgctggattcttgtttcattcagacaaagtagatatgcaccacatgtgcatgtattgtctttagttatgcatcatgtagtcgtctggagccccattgctcttactgactgctgcaggctataatagttgtaacattgaatttggggaacatgaattacagtgaaatatattttcagtgaatcaactgcacagtcaGTAAAATATCA-A---TTCGTATTC--CC-TAGC--TT--GTTTCAAAGAT-------TTGAAA-GTGTTTAGTTTACTCAGTT-------TCCTCTCTAGTAAAAGG-----AA-ATTA---C-A-AGA--AG--AAA----------TGCT------T-TT--AAG-A----TCA---TGG-GTATAAATTATGACTGACAAAAG----TGACAGAA-TATAG-----------------------GATATTTT--AAACTTCC-CT-T-TA-TCT----AACAATTCTAAA-TG----C-ACTACAATTAAT-GATGTCT---TTTCT--A------ATATCT-------AACTA-AATTATAGGTTGT--TTTC----TAATATGATTCTATATTCAAACTTTA-CTTT-ATTTCAATCA-CTA-TGTA-A-----C-T---TATT--ACAC-TGGT-ATTATGAGGTGAAAA--A-ATTC-TGAAATACCAAGTAGTAGAAAT--------A--TAA--------C-ATATAATAGCGACCATGAGCAAAAATCT-A--ACAAAGAAATTCGGTTTACCTCATATCTCATCTGCGTTTGCCAATTTTATTAGTTCTACTCTGC-AAACAAACtgat
gi|6 : AGTAATATA-TT-ACT-TT---ATTC--TT-T--CAAGT--G----AAAAAAAGATGTTT-GAAA-GT---------TCTGATTT-------TCGTATTTGATAGAATA-----AA-ATTA---C-A-GTA--AG--AAT----------GTTT------TATT--AAA-AGTAT--------GCGAATAAGCCGTAACTGGCAAA
gi|6 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaATTTT--GAAATTTC-TATC-TC-TTTTG-GAGTCATCTTAAC-TGTTT-T-ACCCCT---AACATAT---T---GTTCTGAAG-G--GAGAAttttgaaatttctatctcttttggagtcatcttaactgttttacccctaacatattgttctgaagggagaaa
gi|7 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaagtaatatattactttattctttcaagtgaaaaaaagatgtttgaaagttctgattttcgtatttgatagaataaaattacagtaagaatgttttattaaaagtatgcgaataagccgtaactggcaaGTTAAATA-TC-ACT-TTAAAATCC--CC-TTAC--TT--G----AAAAAA----------AAA------------ACTGAATTGCACGATTTGTCTCAAG-AAAACA-----AACAACA---G-G-GCA--A----AA----------GATT------T-AT--AAA-----TTTA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Ta
gi|8 : cttaagactgatctgatatgcactgtatgtgcctgtgcccactttcagttgtacaacatagaaccacatattactctatattatttacatctttaaaatttgatgggtgtgggaaacttgaataaaggggactatattttcggtaaaacaatggcgttAAATA-TC-ACT-TTAAAATCC--CC-TTAC--TT--G----AAAAAAAAAA---T-GAAA-TT---------GCCGACTT-------T-GTCTCAAGAAAAACA-----AA-CTAA---CAG-GCA--A----AA----------GATT------T-AT--AAA-----TTTA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Tt
gi|9 : atatgcactgtatgtgcctgtgtccctttcagttgtacaacatagaaacacatattactctatattattcactctttaaaatttgatgggtttggaaacttgaataaaggggattatattttcggtgaaacaatggcgttgtAAAATA-TG-TTTCTTTATTTCC--TCAT--T--TT--G----AAAACA-------T-TTAA-GT---------ACTGACTT-------TTGTGTCCAGCAGAACA-----AA-TTCC---C-A-GCA--tt
blockSeqs : TCA C TGT CG A CCA TA TTTC AAGATGTTTG C GTTTAGTTTA GCACGATTT C CTTTG ATCAAATCGAGGAAATATTTTCAAT CCCTC TATTA CCAAATTA C TATC GT AGCACGTGAAGTAAATATTTA . A TAAA CA T T CTCA AATT GATGTCTT CGGAA GC T TTCCTCTCTCTTACTG TCT A T G . TTCA . T CAAATACATG AT . A T GAG . T AAA C G . ATGATCAA GAGCAAAAA ATTAC TCATC G TGCCAATTTTA T . A . . A . . . A A C C A A A TA T . C C CC A . A . . . . . . G T . . . . T . . . . . . A T CC . .
blockSeqs : CA . TAT . . AGC . . AAAAATG . C TA C . ATGACTTCATGAAAAA TATT ACTA TTACA . T C AAAAATTTGGCAT . A GTTC C . . CTCG A CTTGAGC GAAGG GA . TATAGGTTGTTTTC TTC T A T . . . . CCGTGA . . . T . . T TG T . . CA C AACA T . ACA T . A . A . . . . A C . . . A TA T . . C C A . A
blockSeqs : TT . TAT . . CAA . . TTTG . A TT C . ATCATACCAAGTCAA TCC ACTA TCATG . . A TGAAAATTTACT . G TATC T . . TTTT A ATATTG AGG . . TTTTCTTTT G T . . . . . . ACT . . . T . . .
blockSeqs : TC . CGT . . TAC . . TTTG . A TT C . TACATAAGAAGAAAA TTC ACTA TTATA . . A AATGATACTGCA . A CAT C . . CTC T CATTA AAG . . .
blockSeqs : TC . AAA . . TAC . . CTT . A TC C . ATCACGACAAGAAAA TCC ACTA TTATA . . G AGTTTTGTA . C CAC C . . CTT T ACTT A
blockSeqs : TG . AAA . . C . . CTT . A TC C . TTGACAGCAAGGAA TCA ACTA TATA . . G AG . G TAG C . . C .
blockSeqs : . TAT . . C . . ATG . A TC T . ATTACAAGAAGAAA TTC ACCA AT . . A A . C CTT A . . C
blockSeqs : TA . . T . . ATT . T TC T . ATTACAGTAAGAAT TTC AGTA G . . G . . T G C . .
blockSeqs : . . . T . . TG . A TT A . CAACAGGGCAAAA TTC ACT T . . G . .
blockSeqs : T . . A . G T A . CTAACAGGCAAAA TTT AC G . . .
blockSeqs : . A T C . AGTGCAAATAAA TAT A . . . .
blockSeqs : . . . AGCAAGTGCA TAT . . .
blockSeqs : . TC .
blockSeqCons : TN** A********* TC******* ATNACAGGAAGAAA******************** TTC********* ** C* CTC*** AGG***** G** TTCCTCTC************
originalCons : AGTAAAATA-CG-ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACA-----AA-ATCA---C-G-GCA--AG--AAA----------GATT------T-CC--AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AATT-----TTTC--TTTT----TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
finalCons : AGTAAAATATN--ACT-TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GTA---------CTGACTTTC-------GTCTCCAGTAGAACA-----AAATNACAGGAAGAAA--------------------GATTTTC---------AAA-ACTATTTA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TGCTC---ACTCCA---AAT-NAT---T---NTTTTAGG-----GAAAACTTTGAG--AAATA-AATTTCCTCTC------------TAATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACCCTTCAGACGAATTAAATGATGTTCGCCATATGTACAGATATTTTTCTCAGTTATAAACATGCGAGTTATCAAGTCACACTATATCTTCTTATTTAGAGTCGTATCATTTGATGCTAAAATGGGGTGTGGAGAACTTGAAATATAAGGGACTATATTTTCAAAGCAATTATTGTAGTAAAATACTGTAGGATATCACCTTATT
Unaligned ( gi|15 ): TTCAGTTACGAATCATTGGTCCACATTACTCTTTCTTATATTACAATGGGTCTGTCGAGTTTTTGGGGACTATATTTTCGGTGGATGTGAATCGACGGCGTAGTGAAATTCAATTTATACCCTCATTCGAA
Unaligned ( gi|17 ): AAATCGTAATTTGCTATTGAGGATGCATTCTTTCGTTCAGACAAATTAGAAGATATGCACCATAAATGCATATATTTTTGTTTAATAATCAAACATAGTTCACGTAGTTG
Unaligned ( gi|19 ): TTTATGAGTGGTGGATTATTGTCATCATTTAGACAAATTAGAACTCACGCACCGTATGGGTATGTAT
Alignments
lowQualScore : 11 111 11111 22222222222 1111111111 111111111 11111111 3333333333333333333333333 1111 888888888888888888888888 111111 111111 1111 222222222222 11111111 333 444444444444444 1 2222 1 1 4444444444444 11 1 1 111 11 111 11 33333333333 444444444 2222222 22222 1 55555555555 1 1 1 1 1 1 1 11 22222 33333 1 1 11 1 1 1 1 1 1 1 222 1 2222 4444444444 222 1 1 1 11 1 1 1 11 1 1
lowQualScore : 55 00 222 55 4 99999 55 7777 44444444444 3 3333333333 333333333 2 0 4 33 555 33333333 3 44 888888 2 7777777777777777777777777 3 0 0000 77 000000000000000000000000 55 2 222222 44 4 4 777777 0 1111 111111111111 55555555 0 222 8 555555555555555 8 2 777 1 9 8 0 1111 0 0 0000000000000 33 0 0 3 777 33 3 999 1 6 88 99999999999 666666666 1111111 0 66666 3 00000000000 7 3 7 5 3 7 3 3 3 7 7 6 2 7 7 44 44444 88888 3 3 6 33 7 3 7 5 5 5 5 5 5 111 5 3333 0000000000 000 5 1 5 5 88 5 5 5 1 1 77 5 5
lowQualScore : .. .. ... .. . ..... .. .... ........... . .......... ......... . . . .. ... ........ . .. ...... . ......................... . . .... .. ........................ .. . ...... .. . . ...... . .... ............ ........ . ... . ............... . . ... . . . . .... . . ............. .. . . . ... .. . ... . . .. ........... ......... ....... . ..... . ........... . . . . . . . . . . . . . . . .. ..... ..... . . . .. . . . . . . . . . ... . .... .......... ... . . . . .. . . . . . .. . .
lowQualScore : 44 66 333 55 0 44444 00 7777 66666666666 3 8888888888 111111111 1 4 7 99 000 88888888 1 22 222222 9 0000000000000000000000000 1 1 4444 88 888888888888888888888888 55 4 000000 66 4 4 555555 7 9999 222222222222 22222222 8 000 0 444444444444444 0 5 888 2 8 8 0 2222 0 0 5555555555555 88 0 0 2 555 88 2 000 0 7 33 00000000000 777777777 3333333 7 33333 3 77777777777 3 3 3 5 3 3 3 3 3 3 3 7 0 3 3 77 00000 00000 3 3 7 33 3 3 3 0 5 5 5 0 5 000 5 0000 5555555555 555 0 0 5 5 00 0 5 0 0 0 55 0 5
consensus : AGTAAAATATC-ACT--TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACAAANTN-A---CAG-GAAG--AAA-GAT--T------T-TCAA--------AACTATT---TA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAGC-AAATA-AAT------TT--C-CTTTCT-AATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
Reference ( family-4670 ) : AGTAAAATATN-ACT--TTTATATCC--TC-T--C--TT--G----AAAAAN-------T-GAAA-GT---------ACTGACTT-------TCGTCTCCAGTAGAACAAAATN-A---CAG-GAAG--AAA-GAT--T------T-TCAA--------AACTATT---TA---TAG-GAATAAGTCGTAACTGACAAAAG----TAACAGAG-TATAA----TGA------TACT--CA-TGATATTTT--GAACTTNC-TA-N-TC-TCTTG-GGGCCATTTTAGA-TG-CT-C-ACTCCA---AAT-NAT---T---NTTTT--AG-G--GAAAACTTTGAG--AAATA-AAT------TT--C-CTCTCT-AATATGATCCGATATCCCTACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---GTGAAAA--ATGTTCAAGAAATTCTAAGNAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTCGGTCTGCTTCATATC---TCTGT-TTTG-CA----TATTGGCTCTGCTCCTC-AAACAGACTGAGTGTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGCCTACAAAGTAATG--TAATACAATTAAT---TATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATGTCTCCGTGCAGATCACTTTGCTTGTGGGATGCTGGTTAGAGATTATATCTGTCCGTGTCNCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTNTANTCCAGTCATACTGGGATGGTAGAGATT
gi|1 : AGTAAAATACATACT--TTTGTGTTC--TC-T--C--TT--G----AAA--T-------T-TAAA-GT----------CTAATT----------GTCTC-AGTAGAA-AAAGTATA---CA----AGTCAAC-GAT--TGGGGGGT-CAAA--------AACTACT---TA---CAG-GAATACGTCGTAAGTGGCAGAAG----TAAAAAAG-T-TAA----TGA------TACTG-CA-TGATATTTTTGAAACTTAC-TA-A-T--TCGTG-AG--CATTTTAGC-TG-CTGCGACTCCA---AAT-GAT---T---ATTT---AGCG--GAAAACTTTGAGCTAAATA-AAT------TTTTC-ATTTCTTAATAT-ATCTGTAACCCCTACTTCAGTTTTCAT----ATCAGTTA-TGCAAC-----CGTGAGTATA--GCACGTGTT-TT-AT---ATGAAAACCATGTTCAA-AAATTCTAAGAAGTAGAAATGGGATTGAAATTGAAATTGAATCA-TATAATAAGGCCTAT---C-----TTTTATT-C-TGGGGATTTCGTCTGCTTCATATC---TTTGT-TTTA-TA----T-TTGGC-CTGCTCCTCCAAACAG-CTGAGTGTATGCTCTTACTGC--TGTTTATCACTACAATTTTAGAAAAAAATATTTA-TA-GCTAACAAAGTAATGGCTAATACAATTAATCAGTATGTGTAATATACATG-GAATTTTTAAGGC-GTC-GAT-TTTGATGTATAAGATATAAAAAAAAA-TGATGACCTTGAACTTCGTCTTGACACAAAAACATATAGTTCAATGTTGGAACCAGTCAGGTGTTCTGTGTTATA-CTCTGTGCAGATCACTTTGCTTGTGAGATGCTGATTAGAGATTATATCTATCTGTGTCGCTCAGTATACTTGGGATGGTAAGAGATTATATTGTCCTGTTTAGT--AGTCATACTGGGATGGTAGAGATT
gi|10 : cagtAGTAGACTATC-AATCATTTA-ATTC--TT-T--CCATT--G----AAAAAT-------TTGAAA-CT---------CCTGACT-------------------AGAACAAATTG-A---CAG-CAAG--GAA-AATACC------C-TCAA--------AACTAT-----A---T---GAATAAATCTTGATTACCAAAAG----TAAAAGAC-TATA--------------------------TACTTT--GAACTTAT-CA-T-CCATCTTG-GGGCCATTTTAGA-TT-CT-CAACCCCA---AAT-ataattgtctggttcctagttgatggctatatgttcat
gi|12 : gctaatatgaggtatgtggaacttgaactagtagggaatacatttttagtggaatcaaagtat--C--TT--G----AAAAA--------T-GAAA-GT---------ACTGACAT-------TAATCTCCAGTAAAACAAAATC-A---AATCGAGG--AAA-TAT--T------T-TCAATGATCTCCAAATATTATCCAAATTAG-GACTAAATCGTAACTGGC-AAAGTATCTAACAGA--TAT-A----TGA------ctt
gi|13 : -------T-GAAA-AT---------ACATACTT-------TTGTTTCCAGTAAAACAAAATG-ACTTCAT-GAAA--AAA-A----T------T-TCAA--------AAC-------TA---TAG-GAATTGGTCTTCATAGATCAAAG----T---AGGA-TAT---------------------------TATTTT--GAATTTAC-CA-C-CC-TCTCG-GTGCCATTTTGTA-TG-CT-C-aaattcaattcgaactcattagatcaagtcg
gi|14 : atttTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AGAAAAAAATATTTAATACGC-TACAA-GTA-TG--TA-TACAATTAAT----ATATGTGATATA-ATG-GAATTTTTAAGGCCGTCCGATATTTGATGTATAA-ATATAAAAAAAAAAtacctcggat
gi|16 : GAACAAAAGT-G---CA---AAT--AAA-GAC--C------T-TCAA--------TACTAT----------GA-GAAT--GTCTTAACTGGTAA--G----TGACAGAA-TAT------TGAAAATT-TACT-----TGATATTTT--GGACT-------G-TT-CCTTGTAGGACATTTTAGA-TG-CT-
gi|18 : cccacgt------T-CCAA--------AACTATT----------G-GAA-AAGTCGTAACTGACGAAAGT---TATCAGAGTTATAA----AAA------T-TTGGCATTGATATCTT--GAACTTGC-
gi|2 : AGTAAAATACA-ACT--TTTGTGTCC--TC-T--C--TT--G----AAAATC-------T-TAAA-GT---------ACTAACTT-------TTGTCTCCAGTAGAACAAAATC-A---TAC-CAAGT-CAA-GAT--G------T-CAAA--------AACTACT---TA---CAG-GAATAAGTCGTAACTGGCAGAAG----TAACAAAG-TATAA----TGA------TACTG-CA-TGATATTTT--GAACTTAC-TA-AATC-TCGTG-AGGCCATTTTAGA-TG-CT-CGACTCCA---AAT-CAT---T---ATTTT--AG-G--GAAAACTTTGAGC-AAATA-AAT------TT--TTCTTTTT-AATATGATCTGATAACCC-ACTTCAGTTTT-AT----ATCA-TTA-TGCA-C-----CGTGA-TATA--GCAC-TGTT-TTTAT---ATGAAAA--ATGTTCAAAAAATTCTAAGCAGTAGAAATGGGATTGAA--TAAA--TGA-TCAATATAATAAGGCCTAT---C-----TTT-ATTAC-TGGGAATTTGGTCTGCTTCATATC---T-TGT-TT----A----CATTGGCTCTGCTCCTC-AAACAGACTGAG-GTATGCTCTTACT-CAGTGTTTA-CA-TACAATTT-AG-AAAAAATATTTAATACGCCTAC-AAGT-ATG--T-ATACAATTAA----TATATGTGATATA-ATGCGAATTTTTAAGGCCGT-CGATATTTGATGTATAA-ATATAAAAAAAAAATGATGACCTTGAACTT-GTCTTGACACAAAAAC-TA-AGTTC-AT-TTGGAACCAGTCAGGTG-TCTG-G-TATGTCTCCGT----ATC----------TGGGA---TGGTTAGAGATTATAT-TGTTCGTGTCTC-CAGTAT-CT--GGAT-GT-AGAGATTATATTGT-CTGTATATTCCAGT-AT-CTGAGATGGTAGAGATT
gi|20 : ATTC-------TCGTCTCCAGTAAAACACATAC-A---TAA-GAAGA-AAA-GAT--T------T-TCAG--------AACTATtatattgttctgtgttctcagtatctgggattggttagagattca
gi|3 : aATATC-ACT--GT-ATTTCC--TC-A--T--CT--G----AAAAAC-------T-TCAACGC---------ACTAATTT-------T-GTCTCCAGTA-AATACAATC-A---CGA-CAAG--AAAAGAT--T------T-TCAA--------AACCAT----------GG-GAATAAACCATAACTGATAAAAT----TAACAGA--CATAGCACGTGAAGTAAATATT--TA-TGATATCGT--AAATTTCC-TA-G-TC-TCTTT-GGGCCACTTTAAA-TA-C-------CCT---AAT-C-T---TGAGCTTTT--CG-GAAGAAAACTTTGAGA-AAATC-AGT---------------------TATGA--GGATATCCCTACTTCATTTTT-GC----GTCC-TGATTTCA-CAAATACATG--TACAATGTAC-TATTATCTAA---GGGAAAA--ATGTgggga
gi|4 : aaattgttgacgtttattaaggatgcattcttgtcactatgcatccagtttagatatgctccatatgagcatttactttctttatttataaaacacgtgagtcatggaacctttttttttctttttgtttttttttttacatatgtaatattaggaaagggggacctgaattacagggggacaatattttctgtgaactatgTTATATTCCGTC-T--T--TTTAA----AAAAAA-------T-GAAA-GC---------ACTGACTT-------TCGTTTCCAGTAGAACACTTTG-A---AAG-CAAGT-GCA-GAT--T------T-TCAA--------AACT-T-----------G-GAATAAATCGTAACTGACAAAAT----TAACAGGG-TATAG----T--------TTTG--TA-TGATATCTT--TAATTTGCGTT-C-TC-TCTTA-GCGCTTTTTTAAATTC-CT-T-AGT------AAT--AC---T---TTCTT--AA-G--GAAAAAATTGA---AAATATGAT------TT--C-CTCTCT-gtggtggtaaagtgacagaaagtacgatcaacatcaatcgaggaaatttgttccaccttatcggtgcttaagcttagtcgcttgatatgcagatatgctcatacacatgtacatagtttttatgttgcaaattaaaaaaaagttgtgatggatcgcatgcgtatgcttatatgcaatttgtgtctgctttaatgaaatttt
gi|5 : aatcggatcgtttgttcatccttttggaatgctggattcttgtttcattcagacaaagtagatatgcaccacatgtgcatgtattgtctttagttatgcatcatgtagtcgtctggagccccattgctcttactgactgctgcaggctataatagttgtaacattgaatttggggaacatgaattacagtgaaatatattttcagtgaatcaactgcacagtcaGTAAAATATC-AAT--TC-GTATTC--CC-TAGC--TT--GTTTCAAAGAT-------TTGAAA-GTGTTTAGTTTACTCAGTT-------TCCTCTCTAGTAAAAGGAAATT-A---CAA-GAAG--AAA-TGC--T------T-TTAA--------GA----T---CA---TGG-GTATAAATTATGACTGACAAAAG----TGACAGAA-TATAG-----------------------GATATTTT--AAACTTCC-CT-T-TA-TCT----AACAATTCTAAA-TG----C-ACTACAATTAAT-GATGTCT---TTTCT--A------ATATCT-------AACTA-AATTATAGGTT--G-TTTTCT-AATATGATTCTATATTCAAACTTTA-CTTT-ATTTCAATCA-CTA-TGTA-A-----C-T---TATT--ACAC-TGGT-ATTATGAGGTGAAAA--A-ATTC-TGAAATACCAAGTAGTAGAAAT--------A--TAA--------C-ATATAATAGCGACCATGAGCAAAAATCT-A--ACAAAGAAATTCGGTTTACCTCATATCTCATCTGCGTTTGCCAATTTTATTAGTTCTACTCTGC-AAACAAACcttactgtaatatgtgat
gi|6 : AGTAATATATT-ACT--TT---ATTC--TT-T--CAAGT--G----AAAAAAAGATGTTT-GAAA-GT---------TCTGATTT-------TCGTATTTGATAGAATAAAATT-A---CAG-TAAG--AAT-GTT--T------TATTAA--------AAGTAT-----------GCGAATAAGCCGTAACTGGCAAA
gi|6 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaATTTT--GAAATTTC-TATC-TC-TTTTG-GAGTCATCTTAAC-TGTTT-T-ACCCCT---AACATAT---T---GTTCTGAAG-G--GAGAAttttgaaatttctatctcttttggagtcatcttaactgttttacccctaacatattgttctgaagggagaaa
gi|7 : aaaccacattactctttgtcattgacagctgttgtgcgaatatttaacactgggggaatttgcataatggggaactatattgtcagggaagtcaacggcgaagtaatatattactttattctttcaagtgaaaaaaagatgtttgaaagttctgattttcgtatttgatagaataaaattacagtaagaatgttttattaaaagtatgcgaataagccgtaactggcaaGTTAAATATC-ACT--TTAAAATCC--CC-TTAC--TT--G----AAAAAA----------AAA------------ACTGAATTGCACGATTTGTCTCAAG-AAAACAAA-CA-A---CAG-GGCA--AAA-GAT--T------T-ATAA--------A----TT---TA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Ta
gi|8 : cttaagactgatctgatatgcactgtatgtgcctgtgcccactttcagttgtacaacatagaaccacatattactctatattatttacatctttaaaatttgatgggtgtgggaaacttgaataaaggggactatattttcggtaaaacaatggcgttAAATATC-ACT--TTAAAATCC--CC-TTAC--TT--G----AAAAAAAAAA---T-GAAA-TT---------GCCGACTT-------T-GTCTCAAGAAAAACAAACTA-A---CAG-GCA---AAA-GAT--T------T-ATAA--------A----TT---TA---TAG-GGAAAAGGCGTAACGTACGCAAG----CAACAGGG-TACAA----Tt
gi|9 : atatgcactgtatgtgcctgtgtccctttcagttgtacaacatagaaacacatattactctatattattcactctttaaaatttgatgggtttggaaacttgaataaaggggattatattttcggtgaaacaatggcgttgtAAAATATG-TTTC-TTTATTTCC--TCAT--T--TT--G----AAAACA-------T-TTAA-GT---------ACTGACTT-------TTGTGTCCAGCAGAACAAATTC-C---CAG-tt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACCCTTCAGACGAATTAAATGATGTTCGCCATATGTACAGATATTTTTCTCAGTTATAAACATGCGAGTTATCAAGTCACACTATATCTTCTTATTTAGAGTCGTATCATTTGATGCTAAAATGGGGTGTGGAGAACTTGAAATATAAGGGACTATATTTTCAAAGCAATTATTGTAGTAAAATACTGTAGGATATCACCTTATT
Unaligned ( gi|15 ): TTCAGTTACGAATCATTGGTCCACATTACTCTTTCTTATATTACAATGGGTCTGTCGAGTTTTTGGGGACTATATTTTCGGTGGATGTGAATCGACGGCGTAGTGAAATTCAATTTATACCCTCATTCGAA
Unaligned ( gi|17 ): AAATCGTAATTTGCTATTGAGGATGCATTCTTTCGTTCAGACAAATTAGAAGATATGCACCATAAATGCATATATTTTTGTTTAATAATCAAACATAGTTCACGTAGTTG
Unaligned ( gi|19 ): TTTATGAGTGGTGGATTATTGTCATCATTTAGACAAATTAGAACTCACGCACCGTATGGGTATGTAT