lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222 11111111111
lowQualScore : 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 1 1 666666666666 2222 444444 66666666666666666 1 77777777777777777777777777777777777777 333 333333333 6666666 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333 1 1 111 111 8888888 111 1 2222 11 1 1 1 1 11111111111 444444444444
lowQualScore : 3 44 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 2 2 7777 3 5 2 8 0 3 222222222222 1 0000 0 777777 6 4 22222222222222222 55 0 00000000000000000000000000000000000000 555 3 888888888 2 0000000 8 5 3 3 0 77777 2 2 6666666666666666666666666666666666666666666666666666666666666666666666 2 2 0 3 5 6 444 0 888 2222222 888 6 5 6 6 2 9999 0 88 6 3 5 6 1 5 7 5 11111111111 222222222222 3 6
lowQualScore : . .. .................................................................................................. . . . .... . . . . . . ............ . .... . ...... . . ................. .. . ...................................... ... . ......... . ....... . . . . . ..... . . ...................................................................... . . . . . . ... . ... ....... ... . . . . . .... . .. . . . . . . . . ........... ............ . .
lowQualScore : 5 33 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 5 2222 0 5 8 0 8 0 444444444444 4 0000 2 222222 0 6 77777777777777777 00 0 88888888888888888888888888888888888888 000 2 555555555 2 3333333 3 0 3 3 7 77777 5 5 5555555555555555555555555555555555555555555555555555555555555555555555 0 2 0 0 0 0 000 8 222 0000000 222 0 0 0 0 0 0000 2 55 5 0 0 0 0 0 0 5 77777777777 000000000000 0 0
consensus : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAATAT---------GTTGTAAGCNGTCAGAAA-ATTNTTGAGCGCCTAAA-TTGATTACAATATTG-AA-ATTT----CTATTAAC---TGTTTATACGGGTTTGCAGAGACACAGTAC--TATATATATAGTGAGCATAC-TT--NTA-TCG-TATGTGTAATAGA-ATGCGGCAA-----AAA-----GA--C----T-----A--------CTCTTTTAATGATTTTTG--------GTATATCGTGAAAAATATAGAAAAATCAGGAC-TT-TTTATTTTCGTATGAGATGTCGTTTTATTGCATTGNGTGTCCTTATGATACAGTGCAGTATC---------------------TA-A----------------------NGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCATGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTNACTGGTGGCATTGAGCTGTACAGAATAAGAGTAGTTTTACACCGACTTA----GTCTTATGTTTATCTANATGTCNTAATTAATGCACATNTAAGTTATACACGTAAG
Reference ( gi|1 ) : TATCAGTGTAAATCAGTATAAATATCATAACCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------GCTGCAAGCCGTCAGACA-ATTTTTGAGCTCCTAAA-TTGATTATAATATTGCAA-A--C----CTATTAAT---TGTTTATACGGGTTTGCAGAGACACAATAC--TATGTATATAGTGAGCACAC-CT--GTA-TAG-T---TGTAGTAGA-ATGCGGCAATGAAGAAA-----GA--C----T-----A--------CTCTT---ATGATTTTTA--------GTATATCATG---ATTTTAGAAAATTCACGAC-TT-TTCATTTTTGTATGAAATATCGTTTTATTGCATTGGGTGT---TATGAT----T-CAGTATC---------------------TA------------------------AGTGCTCTT-GAAGGAAACAACACCAAGA---TATTATCTGTTCCTTTATTTATTGTATATACGTGTACGATTTTTAATTATTGCCAGTGGTTTTAGAAATATACTGGGCTGAATAACTGAAGAAACATTTCTTGC--AAGGAGAACTATAGGCTTAAGTAGTGGTATTTAGCTGTACAGTATAAGAGTAGTTTTACACCGACTTAATTAGTATTAAGTTTATCTAT--GTCATAATAAATGCATATTTAAGTTATACATGTAAG
gi|2 : TAACAGTGTAAGTCAGTATCAATATCATAAT-AACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATACAAGTTGTAATCCGTCGGGAA-ATCTTTGAGCGCCTAAA-TTGATTATAATATTG-AA-ATTC----TTATTAAC---TGTTTCTA-------------AAATAATACTATATATATATAGTGAGCAAATACT--GTA-T
gi|5 : aTATCAGTGTAAAACAGTGTAAATATCATAATCAACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------GTTGTAAGTAGTCAAAAA-ATTGT-GAGTGTCTAAA-TTGATTACAATATTGAAATG--T----CTAACAAC---TGTATATACGGGTTTGCAGAGATACAGT------TATATATAGTGAGCATAC-TC--TTA-T------------TCGATATGTGGCAA--------------A--C----TATTTAA--------CTATT---GTTA-TTTTG--------GTATATCGTG---Attaaatgatgacaaatagaaatttgaatgaaatattctatagtcctattattgaaaccagtttcccttatgttgttctattgcattgggtgtcgttatgattcagtagctatgtaccctttgaagggaagaacaccgagatattagctgtttctttatttattgtacacacgattttaaattcatgtcagtcgtgttagaaatgtactgagctgaataactgaagaaacatttcttccaaggagaactataggcttcactggtggcattgagctgtacagaataagagtagtttacactgacttagtcttgtgcatgttta
gi|4 : aTATCAGTGTAAA--ACTGTAAATATCATAATCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------GTTGTAAGCGGTCAAAAA-ATTGT-GAGCGTATAAA-TTGATTACAATATTG--A-A--TTTTTCTAACAAC---TGTTTATACGGGTTTGCAGAGACACAGT------TATATATAGTGAGCATAC-TTCAATA-TCA-TATGTGTGATAGA-ATGCATCA------AAC-----GATTT----T-----ATTTTTGTTCTCTTTTAATGATTTTTGGTACATGTGTATATCGTGAAAAATATAGAAAAATCAGGAaattcgtacgagatattctatagtccttatat
gi|18 : aTATCAGTGTAAATCAGTATAAATATCATAACCAACAT
gi|17 : aTATTAGTGTAAATCAGTATAAATATCATAATTAACATA
gi|10 : aaTCAGTATTAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAATATACAT-----GTTGCAAGTCGTCAGTGAGATTTTTGAGCCCCTAAAGTTG-CTACAAAATTG-AA-ATTC----CTATTGAC---TGTTCATAC
gi|3 : atatcTAAA-CTGATTACAATATTG-AA-A--T----TTTTTAACAACTGTTTAAACGAGTTTGCAGAGACACAGT------TATATACAGTGAGCATAC-TT--TTACTAGATATGTGTAATAAA-ATGCGGCAA-----ACATCTTCGA--TTTTGT-----T--------TTCTTTTAATGATTTTTG--------GTATATCGTGAAAAATATAGAAAAATCAGGAC-TTCTTTATTTTCGTATGAGATAT
gi|11 : CAGAGACACAATAC--TATATATATAGTGAGCACAC-TT--GTA-ACG-T---TGTAGTAGA-ACGCGGCAATTAAGAAA-----TA--C----T-----A--------CTCTT---ATGATTTTTA--------GTATATCATGA--ATGATAGGAAATTCAGGACTTT-TTCATTTTTGTATGAAATATCGTTtctatagtccttatagtgaaaccctttttacttttgtcgttttattgcattgcgtgtccttatgatacagtgcagtatctacatgtacatttttagagtagactaagtacccttgaagggaagaacaccgagatattatctgttcctttatttattgtttacacgatttctaattctagtcagtggtgttagaaatgtactgc
gi|3 : C-TT-TTTACTTTTGT---------CGTTTTATTGCATTGCGTGTCCTTATGATACAGTGCAGTATC---------------------TACATGTACATTTTTAGAGTAGACTAAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGT-T-TAC----ACGATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTG
gi|2 : taaactgattacaatattgaaattttttaacaactgtttaaacgagtttgcagagacacagttatatacagtgagcatacttttactagatatgtgtaataaaatgcggcaaacatcttcgattttgttttcttttaatgatttttggtatatcgtgaaaaatatagaaaaatcaggacttctttattttcgtatgagatattctatagtccttatagtgaaaccATGTTGTTCTATTGCATTGGGTGTCGTTATGAT----T-CAGTAGC---------------------TA------------------------TGTACCCTTTGAAGGGAAGAACACCGAGA---TATTAGCTGTTTCTTTATTTATTGTACACACG------ATTTTAAATTCATGTCAGTCGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTCTTCC--AAGGAGAACTATAGGCTTCACTGGTGGCATTGAGCTGTACAGAATAAGAGTAG-TTTACACTGACTTAGTc
gi|7 : ataacagtgtaagtcagtatcaatatcataataacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtatacaagttgtaatccgtcgggaaatctttgagcgcctaaattgattataatattgaaattcttattaactgtttctaaaataatactatatatatatagtgagcaaatactgtatttaaatgatgacaaatagaaatttgaatgaaatattctatagtcctattattgaaaccagtttcccttATGTCGTTTTATTGCATTGGGTGT---CCT------------TATA---------------------TA------------------------CCCGCTCAA-GAAGGGAAGAACACCGAAA---TAC-ACCTGTTCCTTTATTTATTGTACACACATG----ATTTTTAATTAATGTCATTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTACCC--TAGGAGAAC--TAGGCTTCACTGGTcttgtgcatgttta
gi|9 : atgagttttggtatagcatggaacttctttatttttgggtgagattttctatggtccttatattgaaaccctttttccttTGTCATTTTATTGCATTGTGTGTCCTTATGATACAGTGCAGTATCAACATGTACATGAAAGTAGACTAGA----------------------AGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTTCTTTATTTATTGT-T-TAC----ACGATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTG
gi|8 : acttctttattttcgtatgagatattctataaaccttatattgaaaccctttttcctttGGAAAGAACACCGACAAATTCTTATCTGTTCCTTTATTTATTGTATACACA------AGTTTTAATTCATGTCAGTG---TTAACAATGTAATGAGCTGAATAACTAAAGAAACATTTTTTTCCAAAGGATAAC--TAAGCTTAACTGGTGGCATTGAGC
gi|14 : tcatgtatgcggatgcaggatatataaataagcaagcacaattttacatctcagaatcctATAACTGAAGAAACATTTTTTA---AAGGAAAACTACA--TTTAACTGGTGGTAGTGACCTGagagccagtcccaagaaagaa
gi|6 : TAGTTTTACACCGACTTA--------T--GTTTATCTATATGTTCTAATTAATGCACATGTAAGTTATACACGTAAGgcggccatcttgaagaaga
gi|16 : TACACCGACTTA----GTCTTATATTTATCTAA--GTCAT----AATGCATATTTAAGTTcatggttggtcattgcaattgttactaggaatatcactaatactttaatttacatttctttcttaaaactatataaaatttacaaccaaaactgtcaaaagtgtaatacttggaagcaatattgctgtcgaatagaactctgttgcgattttttttttggttacgcacggaacataccaagatttaaacattaattttcatgattcaattcatttcatattttt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTAGTTTTATGCCAAATTATATCTATTTATACTCTCATGTGCATGCATATGTAAGCTGTAATCCAATTTCATAAGCATGATTGATTGTTGTTGTCTGCCTAGAAATTTAATTAAAAAA
Unaligned ( gi|13 ): GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTAAGCCGTCAGAAAAT
Unaligned ( gi|15 ): TGAAACCTCTTTTCCTTATGTCATTTTGTTGCATTGGGCATCCTTATGATTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888 1 2222 111 3333333333 999999999999999999999999999999999 11 11111 222222222 111 22222222 333333 444444444444444444444444444444444444444444444444 111 22222222 1111 11 2222 2222 222
lowQualScore : 1 777777777777777777 1 6 1 0 6 6 6 3 6 4 4444 99 0 222 1111111111 44 5 6 111111111111111111111111111111111 00 99 66666 777777777 6 333 1 6 3 2 8 8 55555555 1 666666 0 0 666666666666666666666666666666666666666666666666 0 8 111 77777777 3 4 4444 11 3 1 4 7 1111 2 2 1111 000 88 0 1
lowQualScore : . .................. . . . . . . . . . . .... .. . ... .......... .. . . ................................. .. .. ..... ......... . ... . . . . . . ........ . ...... . . ................................................ . . ... ........ . . .... .. . . . . .... . . .... ... .. . .
lowQualScore : 7 333333333333333333 0 7 0 6 7 7 7 2 7 0 0000 22 3 555 7777777777 77 2 7 777777777777777777777777777777777 33 22 77777 888888888 7 777 0 7 7 5 0 0 22222222 0 888888 8 6 444444444444444444444444444444444444444444444444 8 0 777 00000000 2 0 2222 22 2 0 0 3 2222 5 5 2222 333 33 7 0
consensus : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AA-ATTTCT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-T-CG-TAT-TGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--TT-----TTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGTGCAGTATC---------------------TA-----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
Reference ( family-466 ) : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCNGTCAG-AAAATTNTTGAGCGCCTAAA-TTGATTACAATATTG-AA-ATTTCT-ATTAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-T-CG-TATGTGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--TT-----TTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAGATGTCGTTTTATTGCATTGNGTGTCCTTATGATACAGTGCAGTATC---------------------TA-----------------------ANGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCATGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTNACTGGTGGCATTGAGCTGTACAGAATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTANATGTCNTAATTAATGCACATNTAAGTTATACACGTAAG
gi|1 : TATCAGTGTAAATCAGTATAAATATCATAACCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N----NNNN--GCTGCAAGCCGTCAG-ACAATTTTTGAGCTCCTAAA-TTGATTATAATATTGCAA-AC--CT-ATTAATTGTTTATACGGGTTTGCAGAGACACAATACTATGTATATA--GTGAGCACACCT--GTA-T-AG-T---TGTAGTAGAATG-CGGCAATGAAGAAA-----GA--C----TA--------CTCTT---ATGA--TT-----TTTA--------GTATA-TCATGAT---T-TTAGAAAATTCACGACTT-TTC-ATTTTTGTATGAAATATCGTTTTATTGCATTGGGTGT---TATGAT----T-CAGTATC---------------------TA-----------------------A-GTGCTCTT-GAAGGAAACAACACCAAGA---TATTATCTGTTCCTTTATTTATTGTATATACGTGTACGATTTTTAATTATTGCCAGTGGTTTTAGAAATATACTGGGCTGAATAACTGAAGAAACATTTCTTGC--AAGGAGAACTATAGGCTTAAGTAGTGGTATTTAGCTGTACAGTATAAGAGTAGTTTTACACCGACTTAATTAGTATT----AAGTTTATCT--ATGTCATAATAAATGCATATTTAAGTTATACATGTAAG
gi|10 : TCAGTATTAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----TATACAT----GTTGCAAGTCGTCAGTGAGATTTTTGAGCCCCTAAAGTTG-CTACAAAATTG-AA-ATTCCT-ATTGACTGTTCATAC
gi|11 : atatcCAGAGACACAATACTATATATATA--GTGAGCACACTT--GTA-A-CG-T---TGTAGTAGAACG-CGGCAATTAAGAAA-----TA--C----TA--------CTCTT---ATGA--TT-----TTTA--------GTATA-TCATG---AATGATAGGAAATTCAGGACTT-TTTCATTTTTGTATGAAATATCGTT
gi|13 : ----GCTGTAAGCCGTCAG-AAAAT
gi|14 : gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAACTGAAGAAACATTTTTT-A--AAGGAAAACTACA--TTTAACTGGTGGTAGTGACCTG
gi|15 : ATGTCATTTTGTTGCATTGGGCATCCTTATGATgcggccatcttgaagaaga
gi|16 : tgaaacctcttttccttTACACCGAC----TTAGTCTT----ATATTTATCTAA--GTCA----TAATGCATATTTAAGTTtc
gi|17 : TATTAGTGTAAATCAGTATAAATATCATAATTAACATA
gi|18 : aaTATCAGTGTAAATCAGTATAAATATCATAACCAACAT
gi|2 : aTAACAGTGTAAGTCAGTATCAATATCATAAT-AACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGT----ATACAAGTTGTAATCCGTCGG-GAAATCTTTGAGCGCCTAAA-TTGATTATAATATTG-AA-ATTCTT-ATTAACTGTTTCTA-------------AAATAATACTATATATATATAGTGAGCAAA------TA-C-TG-TATTTA------AATGATGACAA-----ATA-----GA--A-----A-----------TTTGAATGAAATA-----TTC----------TATAGTCCT----ATT-ATTGAAA--CCAG------TTT-CCCTT--------ATGTTGTTCTATTGCATTGGGTGTCGTTATGAT----T-CAGTAGC---------------------TA------------------------TGTACCCTTTGAAGGGAAGAACACCGAGA---TATTAGCTGTTTCTTTATTTATTGTACACACG---A---TTTTAAATTCATGTCAGTCGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTCTTCC--AAGGAGAACTATAGGCTTCACTGGTGGCATTGAGCTGTACAGAATAAGAGTAG-TTTACACTGAC----TTAGTCTTGTGCATGTTTA
gi|3 : aTAAA-CTGATTACAATATTG-AA-ATTTTTTAACAACTGTTTAAACGAGTTTGCAGAGACACAGT----TATATACA--GTGAGCATACTT--TTACT-AGATATGTGTAATAAAATG-CGGCAA-----ACATCTTCGA--TTTTGTT--------TTCTTTTAATGA--TT-----TTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTTCTTT-ATTTTCGTATGAGATAT
gi|3 : T-ATAGTGAAACC----CTT-TTT-ACTTT---------TGTCGTTTTATTGCATTGCGTGTCCTTATGATACAGTGCAGTATC---------------------TACATGTACATTTTTAGAGTAGACTAAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTTTAC------ACGATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGtctatagtccttatagtgaaaccctttttacttttgtcgttttattgcattgcgtgtccttatgatacagtgcagtatctacatgtacatttttagagtagactaagtacccttgaagggaagaacaccgagatattatctgttcctttatttattgtttacacgatttctaattctagtcagtggtgttagaaatgtactgc
gi|4 : taaactgattacaatattgaaattttttaacaactgtttaaacgagtttgcagagacacagttatatacagtgagcatacttttactagatatgtgtaataaaatgcggcaaacatcttcgattttgttttcttttaatgatttttggtatatcgtgaaaaatatagaaaaatcaggacttctttattttcgtatgagatattctatagtcctTATCAGTGTAAA--ACTGTAAATATCATAATCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------GTTGTAAGCGGTCAA-AAAATTGT-GAGCGTATAAA-TTGATTACAATATTG-AATTTTTCT-AACAACTGTTTATACGGGTTTGCAGAGACACAGT----TATATATA--GTGAGCATACTTCAATA-T-CA-TATGTGTGATAGAATG-CATC-A-----AAC-----GATTT----TATTTTTGTTCTCTTTTAATGA--TT-----TTTGGTACATGTGTATA-TCGTGAAAAAT-ATAGAAAAATCAGGAc
gi|5 : aTATCAGTGTAAAACAGTGTAAATATCATAATCAACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------GTTGTAAGTAGTCAA-AAAATTGT-GAGTGTCTAAA-TTGATTACAATATTG-AA-ATGTCT-AACAACTGTATATACGGGTTTGCAGAGATACAGT----TATATATA--GTGAGCATACTC--TTA-TTCG---------ATA---TG-TGGCAA-----A-----------C----TA------------TTTAACTA--TTGTTATTTTG--------GTATA-TCGTGAAA
gi|6 : aTAGTTTTACACCGAC----TTA----------TGTTTATCTATATGTTCTAATTAATGCACATGTAAGTTATACACGTAAGttcgtacgagatattctatagtccttatat
gi|7 : ATGTCGTTTTATTGCATTGGGTGTCCTTAT-ATAC----CCG---C---------------------TC-----------------------AAG---------AAGGGAAGAACACCGAAA---TAC-ACCTGTTCCTTTATTTATTGTACACAC----ATGATTTTTAATTAATGTCATTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTACCC--TAGGAGAAC--TAGGCTTCACTGGTcatggttggtcattgcaattgttactaggaatatcactaatactttaatttacatttctttcttaaaactatataaaatttacaaccaaaactgtcaaaagtgtaatacttggaagcaatattgctgtcgaatagaactctgttgcgattttttttttggttacgcacggaacataccaagatttaaacattaattttcatgattcaattcatttcatattttt
gi|8 : atgagttttggtatagcatggaacttctttatttttgggtgagattttctatggtccttatattgaaaccctttttccttGGAAAGAACACCGACAAATTCTTATCTGTTCCTTTATTTATTGTATACACA---A-G--TTTTAATTCATGTCAGTG---TTAACAATGTAATGAGCTGAATAACTAAAGAAACATTTTTTTCCAAAGGATAAC--TAAGCTTAACTGGTGGCATTGAGC
gi|9 : tcatgtatgcggatgcaggatatataaataagcaagcacaattttacatctcagaatcctTGTCATTTTATTGCATTGTGTGTCCTTATGATACAGTGCAGTATCAACATGTACATGAAAGTAGACTAG----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTTCTTTATTTATTGTTTAC------ACGATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGagagccagtcccaagaaagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTAGTTTTATGCCAAATTATATCTATTTATACTCTCATGTGCATGCATATGTAAGCTGTAATCCAATTTCATAAGCATGATTGATTGTTGTTGTCTGCCTAGAAATTTAATTAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888 1 2222 111 333333333 999999999999999999999999999999999 11 11111111 222222222 111 22222222 1111111 444444444444444444444444444444444444444444444444 111 33333333 1111 11 2222 2222 22
lowQualScore : 1 777777777777777777 6 0 0 6 6 999 6 1 4444 99 0 222 666666666 44 5 6 111111111111111111111111111111111 00 66666666 777777777 6 333 1 6 3 2 8 8 22222222 5555555 5 0 777777777777777777777777777777777777777777777777 0 8 111 11111111 1 4444 11 3 0 1 7 1111 2 2 1111 00 7 7
lowQualScore : . .................. . . . . . ... . . .... .. . ... ......... .. . . ................................. .. ........ ......... . ... . . . . . . ........ ....... . . ................................................ . . ... ........ . .... .. . . . . .... . . .... .. . .
lowQualScore : 7 333333333333333333 7 6 6 7 7 888 7 0 0000 22 3 555 000000000 77 2 7 777777777777777777777777777777777 33 88888888 888888888 7 777 0 7 7 5 0 0 44444444 4444444 6 8 888888888888888888888888888888888888888888888888 8 0 777 00000000 0 2222 22 2 6 0 3 2222 5 5 2222 77 3 3
consensus : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AAATTT-CT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-TCG-TAT-TGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC---------------------TA-----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
Reference ( family-466 ) : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AAATTT-CT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-TCG-TAT-TGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC---------------------TA-----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
gi|1 : TATCAGTGTAAATCAGTATAAATATCATAACCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N----NNNN--GCTGCAAGCCGTCAG-ACAATTTTTGAGCTCCTAAA-TTGATTATAATATTGCAAAC---CT-ATTAATTGTTTATACGGGTTTGCAGAGACACAATACTATGTATATA--GTGAGCACACCT--GTA-TAG-T---TGTAGTAGAATG-CGGCAATGAAGAAA-----GA--C----TA--------CTCTT---ATGA--T-----TTTTA--------GTATA-TCATGAT---T-TTAGAAAATTCACGACTT-TTC-ATTTTTGTATGAAATATCGTTTTATTGCATTGGGTGT---TATGAT----T--CAGTATC---------------------TA-----------------------A-GTGCTCTT-GAAGGAAACAACACCAAGA---TATTATCTGTTCCTTTATTTATTGTATATACGTGTACGATTTTTAATTATTGCCAGTGGTTTTAGAAATATACTGGGCTGAATAACTGAAGAAACATTTCTTGC--AAGGAGAACTATAGGCTTAAGTAGTGGTATTTAGCTGTACAGTATAAGAGTAGTTTTACACCGACTTAATTAGTATT----AAGTTTATCT--ATGTCATAATAAATGCATATTTAAGTTATACATGTAAG
gi|10 : TCAGTATTAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----TATACAT----GTTGCAAGTCGTCAGTGAGATTTTTGAGCCCCTAAAGTTG-CTACAAAATTG-AAATTC-CT-ATTGACTGTTCATAC
gi|11 : atatcCAGAGACACAATACTATATATATA--GTGAGCACACTT--GTA-ACG---T-TGTAGTAGAACG-CGGCAATTAAGAAA-----TA--C----TA--------CTCTT---ATGA--T-----TTTTA--------GTATA-TCATG---AATGATAGGAAATTCAGGACTT-TTTCATTTTTGTATGAAATATCGTT
gi|13 : ----GCTGTAAGCCGTCAG-AAAAT
gi|14 : gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAACTGAAGAAACATTTTTT-A--AAGGAAAACTACA--TTTAACTGGTGGTAGTGACCTG
gi|15 : ATGTCATTTTGTTGCATTGGGCATCCTTATGATgcggccatcttgaagaaga
gi|16 : tgaaacctcttttccttTACACCGAC----TTAGTCTT----ATATTTATCTA-A-GTCA----TAATGCATATTTAAGTTtc
gi|17 : TATTAGTGTAAATCAGTATAAATATCATAATTAACATA
gi|18 : aaTATCAGTGTAAATCAGTATAAATATCATAACCAACAT
gi|2 : aTAACAGTGTAAGTCAGTATCAATATCATAAT-AACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGT----ATACAAGTTGTAATCCGTCGG-GAAATCTTTGAGCGCCTAAA-TTGATTATAATATTG-AAATTC-TT-ATTAACTGTTTCTA-------------AAATAATACTATATATATATAGTGAGCAAA------TA-CTG-TAT-T----TA-AATGATGACAA-----ATA-----GA--A-----A-----------TTTGAATGAAAT-----ATTC----------TATAGTCCT----ATT-ATTGAAA--CCAG------TTT-CCCTT--------ATGTTGTTCTATTGCATTGGGTGTCGTTATGATTCAGTAGC--TAT-------------------------------------------------GTACCCTTTGAAGGGAAGAACACCGAGA---TATTAGCTGTTTCTTTATTTATTGTACACACG---A---TTTTAAATTCATGTCAGTCGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTCTTCC--AAGGAGAACTATAGGCTTCACTGGTGGCATTGAGCTGTACAGAATAAGAGTAG-TTTACACTGAC----TTAGTCTTGTGCATGTTTA
gi|3 : aTAAA-CTGATTACAATATTG-AAATTT-TTTAACAACTGTTTAAACGAGTTTGCAGAGACACAGT----TATATACA--GTGAGCATACTT--TTACTAGATATGTGTAATAAAATG-CGGCAA-----ACATCTTCGA--TTTTGTT--------TTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTTCTTT-ATTTTCGTATGAGATAT
gi|3 : T-ATAGTGAAACC----CTT-TTT-ACTTT---------TGTCGTTTTATTGCATTGCGTGTCCTTATGATACAGT-GCAGTATC---------------------TACATGTACATTTTTAGAGTAGACTAAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTTTACACG---A---TTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGtctatagtccttatagtgaaaccctttttacttttgtcgttttattgcattgcgtgtccttatgatacagtgcagtatctacatgtacatttttagagtagactaagtacccttgaagggaagaacaccgagatattatctgttcctttatttattgtttacacgatttctaattctagtcagtggtgttagaaatgtactgc
gi|4 : taaactgattacaatattgaaattttttaacaactgtttaaacgagtttgcagagacacagttatatacagtgagcatacttttactagatatgtgtaataaaatgcggcaaacatcttcgattttgttttcttttaatgatttttggtatatcgtgaaaaatatagaaaaatcaggacttctttattttcgtatgagatattctatagtcctTATCAGTGTAAA--ACTGTAAATATCATAATCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------GTTGTAAGCGGTCAA-AAAATTGT-GAGCGTATAAA-TTGATTACAATATTG-AATTTTTCT-AACAACTGTTTATACGGGTTTGCAGAGACACAGT----TATATATA--GTGAGCATACTTCAATA-TCA-TATGTGTGATAGAATG-CATC-A-----AAC-----GATTT----TATTTTTGTTCTCTTTTAATGA--T-----TTTTGGTACATGTGTATA-TCGTGAAAAAT-ATAGAAAAATCAGGAc
gi|5 : aTATCAGTGTAAAACAGTGTAAATATCATAATCAACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------GTTGTAAGTAGTCAA-AAAATTGT-GAGTGTCTAAA-TTGATTACAATATTG-AAATGT-CT-AACAACTGTATATACGGGTTTGCAGAGATACAGT----TATATATA--GTGAGCATACTC--TTA-T-----T-CG--AT---ATG-TGGCAA--------------A--C----TA------------TTTAACTA--TTGTTATTTTG--------GTATA-TCGTGAAA
gi|6 : aTAGTTTTACACCGAC----TTA----------TGTTTATCTATATGTTCTAATTAATGCACATGTAAGTTATACACGTAAGttcgtacgagatattctatagtccttatat
gi|7 : ATGTCGTTTTATTGCATTGGGTGTCCTTAT-ATAC-----CCG---C---------------------TC-----------------------AAG---------AAGGGAAGAACACCGAAA---TAC-ACCTGTTCCTTTATTTATTGTACACAC----ATGATTTTTAATTAATGTCATTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTACCC--TAGGAGAAC--TAGGCTTCACTGGTcatggttggtcattgcaattgttactaggaatatcactaatactttaatttacatttctttcttaaaactatataaaatttacaaccaaaactgtcaaaagtgtaatacttggaagcaatattgctgtcgaatagaactctgttgcgattttttttttggttacgcacggaacataccaagatttaaacattaattttcatgattcaattcatttcatattttt
gi|8 : atgagttttggtatagcatggaacttctttatttttgggtgagattttctatggtccttatattgaaaccctttttccttGGAAAGAACACCGACAAATTCTTATCTGTTCCTTTATTTATTGTATACACA---A-G--TTTTAATTCATGTCAGTG---TTAACAATGTAATGAGCTGAATAACTAAAGAAACATTTTTTTCCAAAGGATAAC--TAAGCTTAACTGGTGGCATTGAGC
gi|9 : tcatgtatgcggatgcaggatatataaataagcaagcacaattttacatctcagaatcctTGTCATTTTATTGCATTGTGTGTCCTTATGATACAGT-GCAGTATCAACATGTACATGAAAGTAGACTAG----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTTCTTTATTTATTGTTTAC------ACGATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGagagccagtcccaagaaagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTAGTTTTATGCCAAATTATATCTATTTATACTCTCATGTGCATGCATATGTAAGCTGTAATCCAATTTCATAAGCATGATTGATTGTTGTTGTCTGCCTAGAAATTTAATTAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888 1 2222 111 333333333 999999999999999999999999999999999 11 11111111 222222222 111 22222222 1111111 444444444444444444444444444444444444444444444444 111 33333333 1111 11 2222 2222 22
lowQualScore : 1 777777777777777777 6 0 0 6 6 999 6 1 4444 99 0 222 666666666 44 5 6 111111111111111111111111111111111 00 66666666 777777777 6 333 1 6 3 2 8 8 22222222 5555555 5 0 777777777777777777777777777777777777777777777777 0 8 111 11111111 1 4444 11 3 0 1 7 1111 2 2 1111 00 7 7
lowQualScore : . .................. . . . . . ... . . .... .. . ... ......... .. . . ................................. .. ........ ......... . ... . . . . . . ........ ....... . . ................................................ . . ... ........ . .... .. . . . . .... . . .... .. . .
lowQualScore : 7 333333333333333333 7 6 6 7 7 888 7 0 0000 22 3 555 000000000 77 2 7 777777777777777777777777777777777 33 88888888 888888888 7 777 0 7 7 5 0 0 44444444 4444444 6 8 888888888888888888888888888888888888888888888888 8 0 777 00000000 0 2222 22 2 6 0 3 2222 5 5 2222 77 3 3
consensus : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AAATTT-CT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-TCG-TAT-TGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC---------------------TA-----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
Reference ( family-466 ) : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AAATTT-CT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-TCG-TAT-TGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC---------------------TA-----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
gi|1 : TATCAGTGTAAATCAGTATAAATATCATAACCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N----NNNN--GCTGCAAGCCGTCAG-ACAATTTTTGAGCTCCTAAA-TTGATTATAATATTGCAAAC---CT-ATTAATTGTTTATACGGGTTTGCAGAGACACAATACTATGTATATA--GTGAGCACACCT--GTA-TAG-T---TGTAGTAGAATG-CGGCAATGAAGAAA-----GA--C----TA--------CTCTT---ATGA--T-----TTTTA--------GTATA-TCATGAT---T-TTAGAAAATTCACGACTT-TTC-ATTTTTGTATGAAATATCGTTTTATTGCATTGGGTGT---TATGAT----T--CAGTATC---------------------TA-----------------------A-GTGCTCTT-GAAGGAAACAACACCAAGA---TATTATCTGTTCCTTTATTTATTGTATATACGTGTACGATTTTTAATTATTGCCAGTGGTTTTAGAAATATACTGGGCTGAATAACTGAAGAAACATTTCTTGC--AAGGAGAACTATAGGCTTAAGTAGTGGTATTTAGCTGTACAGTATAAGAGTAGTTTTACACCGACTTAATTAGTATT----AAGTTTATCT--ATGTCATAATAAATGCATATTTAAGTTATACATGTAAG
gi|10 : TCAGTATTAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----TATACAT----GTTGCAAGTCGTCAGTGAGATTTTTGAGCCCCTAAAGTTG-CTACAAAATTG-AAATTC-CT-ATTGACTGTTCATAC
gi|11 : atatcCAGAGACACAATACTATATATATA--GTGAGCACACTT--GTA-ACG---T-TGTAGTAGAACG-CGGCAATTAAGAAA-----TA--C----TA--------CTCTT---ATGA--T-----TTTTA--------GTATA-TCATG---AATGATAGGAAATTCAGGACTT-TTTCATTTTTGTATGAAATATCGTT
gi|13 : ----GCTGTAAGCCGTCAG-AAAAT
gi|14 : gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAACTGAAGAAACATTTTTT-A--AAGGAAAACTACA--TTTAACTGGTGGTAGTGACCTG
gi|15 : ATGTCATTTTGTTGCATTGGGCATCCTTATGATgcggccatcttgaagaaga
gi|16 : tgaaacctcttttccttTACACCGAC----TTAGTCTT----ATATTTATCTA-A-GTCA----TAATGCATATTTAAGTTtc
gi|17 : TATTAGTGTAAATCAGTATAAATATCATAATTAACATA
gi|18 : aaTATCAGTGTAAATCAGTATAAATATCATAACCAACAT
gi|2 : aTAACAGTGTAAGTCAGTATCAATATCATAAT-AACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGT----ATACAAGTTGTAATCCGTCGG-GAAATCTTTGAGCGCCTAAA-TTGATTATAATATTG-AAATTC-TT-ATTAACTGTTTCTA-------------AAATAATACTATATATATATAGTGAGCAAA------TA-CTG-TAT-T----TA-AATGATGACAA-----ATA-----GA--A-----A-----------TTTGAATGAAAT-----ATTC----------TATAGTCCT----ATT-ATTGAAA--CCAG------TTT-CCCTT--------ATGTTGTTCTATTGCATTGGGTGTCGTTATGATTCAGTAGC--TAT-------------------------------------------------GTACCCTTTGAAGGGAAGAACACCGAGA---TATTAGCTGTTTCTTTATTTATTGTACACACG---A---TTTTAAATTCATGTCAGTCGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTCTTCC--AAGGAGAACTATAGGCTTCACTGGTGGCATTGAGCTGTACAGAATAAGAGTAG-TTTACACTGAC----TTAGTCTTGTGCATGTTTA
gi|3 : aTAAA-CTGATTACAATATTG-AAATTT-TTTAACAACTGTTTAAACGAGTTTGCAGAGACACAGT----TATATACA--GTGAGCATACTT--TTACTAGATATGTGTAATAAAATG-CGGCAA-----ACATCTTCGA--TTTTGTT--------TTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTTCTTT-ATTTTCGTATGAGATAT
gi|3 : T-ATAGTGAAACC----CTT-TTT-ACTTT---------TGTCGTTTTATTGCATTGCGTGTCCTTATGATACAGT-GCAGTATC---------------------TACATGTACATTTTTAGAGTAGACTAAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTTTACACG---A---TTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGtctatagtccttatagtgaaaccctttttacttttgtcgttttattgcattgcgtgtccttatgatacagtgcagtatctacatgtacatttttagagtagactaagtacccttgaagggaagaacaccgagatattatctgttcctttatttattgtttacacgatttctaattctagtcagtggtgttagaaatgtactgc
gi|4 : taaactgattacaatattgaaattttttaacaactgtttaaacgagtttgcagagacacagttatatacagtgagcatacttttactagatatgtgtaataaaatgcggcaaacatcttcgattttgttttcttttaatgatttttggtatatcgtgaaaaatatagaaaaatcaggacttctttattttcgtatgagatattctatagtcctTATCAGTGTAAA--ACTGTAAATATCATAATCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------GTTGTAAGCGGTCAA-AAAATTGT-GAGCGTATAAA-TTGATTACAATATTG-AATTTTTCT-AACAACTGTTTATACGGGTTTGCAGAGACACAGT----TATATATA--GTGAGCATACTTCAATA-TCA-TATGTGTGATAGAATG-CATC-A-----AAC-----GATTT----TATTTTTGTTCTCTTTTAATGA--T-----TTTTGGTACATGTGTATA-TCGTGAAAAAT-ATAGAAAAATCAGGAc
gi|5 : aTATCAGTGTAAAACAGTGTAAATATCATAATCAACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------GTTGTAAGTAGTCAA-AAAATTGT-GAGTGTCTAAA-TTGATTACAATATTG-AAATGT-CT-AACAACTGTATATACGGGTTTGCAGAGATACAGT----TATATATA--GTGAGCATACTC--TTA-T-----T-CG--AT---ATG-TGGCAA--------------A--C----TA------------TTTAACTA--TTGTTATTTTG--------GTATA-TCGTGAAA
gi|6 : aTAGTTTTACACCGAC----TTA----------TGTTTATCTATATGTTCTAATTAATGCACATGTAAGTTATACACGTAAGttcgtacgagatattctatagtccttatat
gi|7 : ATGTCGTTTTATTGCATTGGGTGTCCTTAT-ATAC-----CCG---C---------------------TC-----------------------AAG---------AAGGGAAGAACACCGAAA---TAC-ACCTGTTCCTTTATTTATTGTACACAC----ATGATTTTTAATTAATGTCATTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTACCC--TAGGAGAAC--TAGGCTTCACTGGTcatggttggtcattgcaattgttactaggaatatcactaatactttaatttacatttctttcttaaaactatataaaatttacaaccaaaactgtcaaaagtgtaatacttggaagcaatattgctgtcgaatagaactctgttgcgattttttttttggttacgcacggaacataccaagatttaaacattaattttcatgattcaattcatttcatattttt
gi|8 : atgagttttggtatagcatggaacttctttatttttgggtgagattttctatggtccttatattgaaaccctttttccttGGAAAGAACACCGACAAATTCTTATCTGTTCCTTTATTTATTGTATACACA---A-G--TTTTAATTCATGTCAGTG---TTAACAATGTAATGAGCTGAATAACTAAAGAAACATTTTTTTCCAAAGGATAAC--TAAGCTTAACTGGTGGCATTGAGC
gi|9 : tcatgtatgcggatgcaggatatataaataagcaagcacaattttacatctcagaatcctTGTCATTTTATTGCATTGTGTGTCCTTATGATACAGT-GCAGTATCAACATGTACATGAAAGTAGACTAG----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTTCTTTATTTATTGTTTAC------ACGATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGagagccagtcccaagaaagaa
blockSeqs : T NNNNNTGTATACAA T T G . TTT T T ACTA TA CAA CTAGATATG TA G A AACGATTTTATTTTTGTTC TG TTGTTA GGTACATGT G AAA A G T G C C TGTATGAA TCAGTAG A TACATGTACATTTTTAGAGTAGACTAA T AAT ATGA A TCCA TA G A T . G C GTGC AT T T
blockSeqs : T AATATACAT . T . . TC . T ACTA . G TCATATG TA A . ACATCTTCGATTTTGTTT TT AAT A . AAA T . A G . . CGTATGAG ACAGTG C AACATGTACATGAAAGTAGACTAGAA . . ACGA T CC TA G . . G C . A . .
blockSeqs : T . . . . . TC . A . . T CTGTAT TG G . TTAAGAAATACTAC TT T G . AAA A . A G . . . ACAGTG A TCAA . . AAG A CC . A . . . .
blockSeqs : T . . . . . TT . A . . T ACGT . . . ATAGAAA TT T G . . A . A . . . . AC . . . . GA A A . .
blockSeqs : A . . . GT . A . . . TT . . . ACTA . T . . . . . . . GA T
blockSeqs : .
blockSeqCons : ****************** TC* **** CTGTAT*** ACTAC**************************** TT AAA ACAGTG* CAA********************************************* AGA*****
originalCons : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAA-----T----AT----GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AAATTT-CT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGTACTATATATATA--GTGAGCATACTT--NTA-TCG-TAT-TGTAATAGAATG-CGGCAA-----AAA-----GA--C----TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC---------------------TA-----------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG---ACGATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
finalCons : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTA------------------GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AAATTC-CT-ANCAACTGTTTATACGGGTTTGCAGAGACACAGT----TATATATA--GTGAGCATACTT--NTACTGTAT---TGTAATAGAATG-CGGCAAACTAC----------------------------TCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGTG-CAGTATCCAA---------------------------------------------GTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACAGA-----TTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTAGTTTTATGCCAAATTATATCTATTTATACTCTCATGTGCATGCATATGTAAGCTGTAATCCAATTTCATAAGCATGATTGATTGTTGTTGTCTGCCTAGAAATTTAATTAAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 444444444 1 3333 111 333333333333333 11111111111111111111111111111111111 11 11111111 222222222 111 22222222 1 3333333333333333333333333333333333333333333333 111 444444 1111 11 2222 2222 22
lowQualScore : 1 2 888888888 6 0 0 6 6 6 6 1 6 5555 0 222 666666666666666 5 6 22222222222222222222222222222222222 00 66666666 777777777 6 333 1 6 3 2 8 8 22222222 888888 0 3333333333333333333333333333333333333333333333 3 99 111 111111 1 4444 11 3 0 1 7 1111 2 2 1111 00 7 7
lowQualScore : . . ......... . . . . . . . . . .... . ... ............... . . ................................... .. ........ ......... . ... . . . . . . ........ ...... . .............................................. . .. ... ...... . .... .. . . . . .... . . .... .. . .
lowQualScore : 7 2 333333333 7 6 6 7 7 7 7 0 7 0000 3 555 000000000000000 2 7 88888888888888888888888888888888888 33 88888888 888888888 7 777 0 7 7 5 0 0 44444444 666666 6 2222222222222222222222222222222222222222222222 5 88 777 333333 0 2222 22 2 6 0 3 2222 5 5 2222 77 3 3
consensus : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATACNA---------GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AA-ATTCCT-ANCAACTGTTTATACGGGTTTGCAGA-GACACAGTA---TATATATAGTGAGCATACTT--NTACC--GTA-T-TGTAGTAGAATG-CGGCAA---------AC-------------TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC--------------------T------------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACG-----GATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
Reference ( family-466 ) : TATCAGTGTAAATCAGTATAAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTA---------GTTGTAAGCCGTCAG-AAAATTTTTGAGCGCCTAAA-TTGATTACAATATTG-AA-ATTCCT-ANCAACTGTTTATACGGGTTTGCAGA-GACACAGT----TATATATAGTGAGCATACTT--NTACT--GTA-T-TGTAATAGAATG-CGGCAA---------AC-------------TA--------CTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTT-TTT-ATTTTCGTATGAAATGTCGTTTTATTGCATTGGGTGTCCTTATGATACAGT-GCAGTATC--------------------C------------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTATACACA-----GATTTTTAATTCNTGTCAGTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTTTCC--AAGGAGAACTATAGGCTTAACTGGTGGCATTGAGCTGTACAGNATAAGAGTAGTTTTACACCGAC----TTAGTCTT----ATGTTTATCTA-ATGTCATAATTAATGCATATTTAAGTTATACACGTAAG
gi|1 : TATCAGTGTAAATCAGTATAAATATCATAACCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--GCTGCAAGCCGTCAG-ACAATTTTTGAGCTCCTAAA-TTGATTATAATATTGCAA-A--CCT-ATTAATTGTTTATACGGGTTTGCAGA-GACACAATACTATGTATATAGTGAGCACACCT--GTA-----TAGT-TGTAGTAGAATG-CGGCAATGAAGAAAGAC-------------TA--------CTCTT---ATGA--T-----TTTTA--------GTATA-TCATGAT---T-TTAGAAAATTCACGACTT-TTC-ATTTTTGTATGAAATATCGTTTTATTGCATTGGGTGT---TATGAT----T--CAGTATC--------------------T------------------------AAGTGCTCTT-GAAGGAAACAACACCAAGA---TATTATCTGTTCCTTTATTTATTGTATATACGTGTACGATTTTTAATTATTGCCAGTGGTTTTAGAAATATACTGGGCTGAATAACTGAAGAAACATTTCTTGC--AAGGAGAACTATAGGCTTAAGTAGTGGTATTTAGCTGTACAGTATAAGAGTAGTTTTACACCGACTTAATTAGTATT----AAGTTTATCT--ATGTCATAATAAATGCATATTTAAGTTATACATGTAAG
gi|10 : TCAGTATTAATATCATAATCAACATACATATACAAGGTATATGCATGAATATTGTCTAAATAGTGCGAACAAGTGTTCATATCGTTAAACAAATAAAGAAAAAAATATTAAATATACATGTTGCAAGTCGTCAGTGAGATTTTTGAGCCCCTAAAGTTG-CTACAAAATTG-AA-ATTCCT-ATTGACTGTTCATAC
gi|11 : atatcCAGA-GACACAATACTATATATATAGTGAGCACACTT--GTAAC--G---T-TGTAGTAGAACG-CGGCAATTAAGAAATAC-------------TA--------CTCTT---ATGA--T-----TTTTA--------GTATA-TCATG---AATGATAGGAAATTCAGGACTT-TTTCATTTTTGTATGAAATATCGTT
gi|13 : ---------GCTGTAAGCCGTCAG-AAAAT
gi|14 : gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAACTGAAGAAACATTTTTT-A--AAGGAAAACTACA--TTTAACTGGTGGTAGTGACCTG
gi|15 : ATGTCATTTTGTTGCATTGGGCATCCTTATGATgcggccatcttgaagaaga
gi|16 : tgaaacctcttttccttTACACCGAC----TTAGTCTT----ATATTTATCTA-A-GTCA----TAATGCATATTTAAGTTtc
gi|17 : TATTAGTGTAAATCAGTATAAATATCATAATTAACATA
gi|18 : aaTATCAGTGTAAATCAGTATAAATATCATAACCAACAT
gi|2 : aTAACAGTGTAAGTCAGTATCAATATCATAAT-AACATA
gi|2 : aATACAA---------GTTGTAATCCGTCGG-GAAATCTTTGAGCGCCTAAA-TTGATTATAATATTG-AA-ATTCTT-ATTAACTGTTTCTA---------AAATAATACTATA---TATATATAGTGAGCAAA------TACT--GTA-T-T----TA-AATGATGACAA---------AT-------------AG--------AAATTTGAATGAAAT-----ATTC----------TATAGTCCT----ATT-ATTGAAA--CCAG------TTT-CCCTT--------ATGTTGTTCTATTGCATTGGGTGTCGTTATGATTCAGTAGC--TAT------------------------------------------------GTACCCTTTGAAGGGAAGAACACCGAGA---TATTAGCTGTTTCTTTATTTATTGTACACAC------GATTTTAAATTCATGTCAGTCGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTCTTCC--AAGGAGAACTATAGGCTTCACTGGTGGCATTGAGCTGTACAGAATAAGAGTAG-TTTACACTGAC----TTAGTCTTGTGCATGTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtatacaagttgtaatccgtcgggaaatctttgagcgcctaaattgattataatattgaaattcttattaactgtttctaaaataatactatatatatatagtgagcaaatactgtatttaaatgatgacaaatagaaatttgaatgaaatattctatagtcctattattgaaaccagtttcccttatgttgttctattgcattgggtgtcgttatgattcagtagctatgtaccctttgaagggaagaacaccgagatattagctgtttctttatttattgtacacacgattttaaattcatgtcagtcgtgttagaaatgtactgagctgaataactgaagaaacatttcttccaaggagaactataggcttcactggtggcattgagctgtacagaataagagtagtttacactgacttagtcttgtgcatgttta
gi|3 : ataacagtgtaagtcagtatcaatatcataataacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtTAAA-CTGATTACAATATTG-AA-ATTTTTTAACAACTGTTTAAACGAGTTTGCAGA-GACACAGT----TATATACAGTGAGCATACTT--TTACTAGATA-TGTGTAATAAAATG-CGGCAA---------ACATCTTCGATTTTGTT--------TTCTTTTAATGA--T-----TTTTG--------GTATA-TCGTGAAAAAT-ATAGAAAAATCAGGACTTCTTT-ATTTTCGTATGAGATAT
gi|3 : T-ATAGTGAAACC----CTT-TTT-ACTTT---------TGTCGTTTTATTGCATTGCGTGTCCTTATGATACAGT-GCAGTATC--------------------TACATGTACATTTTTAGAGTAGACTAAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTCCTTTATTTATTGTTTACAC------GATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGtctatagtccttatagtgaaaccctttttacttttgtcgttttattgcattgcgtgtccttatgatacagtgcagtatctacatgtacatttttagagtagactaagtacccttgaagggaagaacaccgagatattatctgttcctttatttattgtttacacgatttctaattctagtcagtggtgttagaaatgtactgc
gi|4 : taaactgattacaatattgaaattttttaacaactgtttaaacgagtttgcagagacacagttatatacagtgagcatacttttactagatatgtgtaataaaatgcggcaaacatcttcgattttgttttcttttaatgatttttggtatatcgtgaaaaatatagaaaaatcaggacttctttattttcgtatgagatattctatagtcctTATCAGTGTAAA--ACTGTAAATATCATAATCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------GTTGTAAGCGGTCAA-AAAATTGT-GAGCGTATAAA-TTGATTACAATATTG-AATTTTTCT-AACAACTGTTTATACGGGTTTGCAGA-GACACAGT----TATATATAGTGAGCATACTTCAATATC--ATA-TGTGTGATAGAATG-CATCAA---------ACGATTT--------TATTTTTGTTCTCTTTTAATGA--T-----TTTTGGTACATGTGTATA-TCGTGAAAAAT-ATAGAAAAATCAGGAc
gi|5 : aTATCAGTGTAAAACAGTGTAAATATCATAATCAACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------GTTGTAAGTAGTCAA-AAAATTGT-GAGTGTCTAAA-TTGATTACAATATTG-AA-ATGTCT-AACAACTGTATATACGGGTTTGCAGA-GATACAGT----TATATATAGTGAGCATACTC--TTATT--CGA-T----------ATG-TGGCAA---------AC-------------TA------------TTTAACTA--TTGTTATTTTG--------GTATA-TCGTGAAA
gi|6 : aTAGTTTTACACCGAC----TTA----------TGTTTATCTATATGTTCTAATTAATGCACATGTAAGTTATACACGTAAGttcgtacgagatattctatagtccttatat
gi|7 : ATGTCGTTTTATTGCATTGGGTGTCCTTAT-ATACC-C-GC-----T--------------------C------------------------AAG---------AAGGGAAGAACACCGAAA---TA-CACCTGTTCCTTTATTTATTGTACACACAT----GATTTTTAATTAATGTCATTGGTGTTAGAAATGTACTGAGCTGAATAACTGAAGAAACATTTTACCC--TAGGAGAAC--TAGGCTTCACTGGTcatggttggtcattgcaattgttactaggaatatcactaatactttaatttacatttctttcttaaaactatataaaatttacaaccaaaactgtcaaaagtgtaatacttggaagcaatattgctgtcgaatagaactctgttgcgattttttttttggttacgcacggaacataccaagatttaaacattaattttcatgattcaattcatttcatattttt
gi|8 : atgagttttggtatagcatggaacttctttatttttgggtgagattttctatggtccttatattgaaaccctttttccttATC--------------------T------------------------CAGAATCCT-----GGAAAGAACACCGACAAATTCTTATCTGTTCCTTTATTTATTGTATACACA------AGTTTTAATTCATGTCAGTG---TTAACAATGTAATGAGCTGAATAACTAAAGAAACATTTTTTTCCAAAGGATAAC--TAAGCTTAACTGGTGGCATTGAGC
gi|9 : tcatgtatgcggatgcaggatatataaataagcaagcacaattttacTGTCATTTTATTGCATTGTGTGTCCTTATGATACAGT-GCAGTATCAACATGTACATGAAAGTAGACTAG---------------------AAGTACCCTT-GAAGGGAAGAACACCGAGA---TATTATCTGTTTCTTTATTTATTGTTTACAC------GATTTCTAATTCTAGTCAGTGGTGTTAGAAATGTACTGagagccagtcccaagaaagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTAGTTTTATGCCAAATTATATCTATTTATACTCTCATGTGCATGCATATGTAAGCTGTAATCCAATTTCATAAGCATGATTGATTGTTGTTGTCTGCCTAGAAATTTAATTAAAAAA