lowQualScore : 11111111111111111 111111111111111111111111111111111111111 1111111111111111111111 1111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222 1111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 555555 1 5555555555 1 666666666 1 11 1 11 1 3333333 3333333333333 3333333333 222 11 11 22222 11111 33333333333333333 1 2222 1 1 22 222 1 00000000000000000 11 33333333333 22222 11 1111 11 222222222222222222222222222222222222222 111 11 11 1 11 8888888888888888888888 222222 1 11 1 11 11 11 333 33333 11 1111 3333333333333333333333333333333333333333333 333333333333333333 11 1111 3333333333 1 1 1 77777777 11 22222 1 9999999999999999999999999999999999 1 44444444444444 11 2 111 222 66666666666666666666666666666666666666666666666666666666666666 1 11 11 1 1 1 1 11 1 1 11111 111 1 1 222222222222222222222222222222222222 11 1 2222222222 2222 0000000000000000000 222 1 1 1111 33 2 44444444444 1 111 111111111111111111111111111111111111111111111111111111 44 1 11 11 3 11 2222
lowQualScore : 999 0000000000000 5 222222 8 0 3333333333 66 3 0 111111111 0 33 0 3 33 2 0 3 5555555 0 1 5555555555555 8 88 5555555555 88 0 222 6 55 999 0 11 8 66 99 6 6 6 22222 8 33333 1 3 33333333333333333 0 8888 5 5 77 2 333 0 1 1 99999999999999999 8 11 44444444444 6 6 00000 77 88 4444 55 3 3 8 8 000000000000000000000000000000000000000 8 222 8 8 11 0 88 9 33 0 33 2 2 6 1111111111111111111111 888888 0 33 3 8 11 55 8 11 8 000 44444 88 99 7777 8 2222222222222222222222222222222222222222222 3 1 777777777777777777 0 11 2 5555 55 7777777777 6 7 3 3 5 55555555 88 55555 0 4444444444444444444444444444444444 2 0 22222222222222 33 0 666 2 777 3 66666666666666666666666666666666666666666666666666666666666666 3 8 0 33 44 0 3 0 0 2 0 66 0 0 8 77777 66 111 0 0 2 66 2 888888888888888888888888888888888888 6 33 0 9999999999 1111 5555555555555555555 3 333 2 4 0 0 0 1111 3 22 8 0 8 99999999999 8 7 222 555555555555555555555555555555555555555555555555555555 33 0 0 5 8 0 8 8 55 11 2 0 8 11 8 8 6666
lowQualScore : ... ............. . ...... . . .......... .. . . ......... . .. . . .. . . . ....... . . ............. . .. .......... .. . ... . .. ... . .. . .. .. . . . ..... . ..... . . ................. . .... . . .. . ... . . . ................. . .. ........... . . ..... .. .. .... .. . . . . ....................................... . ... . . .. . .. . .. . .. . . . ...................... ...... . .. . . .. .. . .. . ... ..... .. .. .... . ........................................... . . .................. . .. . .... .. .......... . . . . . ........ .. ..... . .................................. . . .............. .. . ... . ... . .............................................................. . . . .. .. . . . . . . .. . . . ..... .. ... . . . .. . .................................... . .. . .......... .... ................... . ... . . . . . .... . .. . . . ........... . . ... ...................................................... .. . . . . . . . .. .. . . . .. . . ....
lowQualScore : 666 0000000000000 0 444444 0 0 8888888888 55 2 0 555555555 0 88 0 2 88 5 0 2 0000000 8 4 8888888888888 0 88 0000000000 88 8 000 2 88 888 8 00 0 88 00 7 7 7 88888 0 88888 2 2 88888888888888888 0 7777 5 0 55 5 333 0 4 0 66666666666666666 0 00 00000000000 7 7 33333 22 33 2222 88 2 2 0 0 222222222222222222222222222222222222222 0 222 0 0 00 8 88 2 88 0 22 5 5 0 0000000000000000000000 888888 0 22 2 0 00 44 0 00 0 666 22222 88 00 0000 0 2222222222222222222222222222222222222222222 8 0 888888888888888888 8 00 8 4444 88 4444444444 7 3 3 3 5 00000000 33 00000 0 2222222222222222222222222222222222 5 0 22222222222222 55 0 222 5 555 5 55555555555555555555555555555555555555555555555555555555555555 2 2 0 88 00 0 2 0 0 5 0 00 0 0 8 55555 55 000 0 0 5 55 5 888888888888888888888888888888888888 0 88 0 8888888888 2222 2222222222222222222 2 555 5 2 2 0 0 8888 8 88 0 4 0 44444444444 0 0 444 888888888888888888888888888888888888888888888888888888 00 8 8 8 0 8 0 0 88 00 0 8 0 00 0 0 0000
consensus : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GATGCATCACT-ACCTTT-TGC---------ATTATTC-TTACACA-CTGA--C-TGC--AA-ATAAATCCT--CTGTA-TTACG-A----TTATCAAAA---TTTTAT-GCGC-TA-TTTC----------CAAAA-CAATTTT--CATNAAGTTTTGGGAAAA-TAAC--GTGTT-GACATTTTCA-ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC-A-ATA-----AAGTG-CGCATGAATAC-ACGAT-GTAATATAAACCACGTCAGAAGNCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC--TATATA-TT--GAATATAAGACA--C---GT--CA-TATTG-ATTG---T-AAACANCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTC-----AT---AAA-----------ATCAAACG-CATG-T-A-CAC-AT--TCGTACG-AAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAGTTCC--------CTGCG-TCCTGCTTC------GTAC-TCTTCAAAT-AATNTC-C--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-A-TTGAAGGG--CAC-TGATT--GTTTAAGA----TG-TT----TT----------GTCTTA-------AACT----------TGTCAAAGTTT-C--ATTT-ACGC--GGTTTTGTTTA--CAAA--C-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GC-CCATATTGAAACACCTTTGT--TTAT-----AATT-TACAACGNCG-AN----GTATG---TGGCGT-GTG--CGTAATNGGTA-GCGTCG-TCA-GACTCGCATGNAGA-GG-GTCCNGG--TTCAANTCCC-G----AAG--NAGC-GTGAT----------TTTTTTTTT---------A---A------TTCTTATA-ATTTATT--TCCCC-NTTTAGATCA-CCAGCA-AAT-GGNT-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACA----------A------TATTAGTTGNTGCTAAGGAGTATTT--GTG-CAGT-A-C------TTTGGAAATAT----GAGCAT--TA-ACCACTTTAAATAATGTCT-N-AGTTTGAATTTTGATC-AT-AT-GCAAAGATGATGCCAT-TTGGAATTT-TATAAAAAAN---ATT-ATCATTC--AAGTTAAAAA-AAAAATTA------GACT-------------T----------------TTGAAATAT-TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGC--TAGGCAACCAATATT-AA--AAGATA-GC-AAAGTAA--ATTACA
Reference ( gi|2 ) : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGTAAATGCATCACT-ACCTTT-TG----------ATTATTC-TTACACATCTGA-GC-TGC--AA-ATAAATCCT--CTGTA-TTAC--A----TTATCAAGA---TTTTATTGCGC-TA-TTTC----------CAAAA-CAATTT---CATAAAGTTTTGGGGGAA-TAAC--GTGTT-GACGTTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC---ATA-----AGGTG-CGCATGAATAC-ACGATGGTAATATAAACCACGTC--AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATATTATATATCTATGTGTA-TT--GAATATAAGACA--C---GT--TA-TATTG-ATTG---T-AAACTCCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTC-----AT-----------------ATCGAACG-CATG-T-A-CAC-AT--TCGTACG-AAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAAT-----------CT---------CTTC------GTAC-TCTTCAAAT-AATGTC-C--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-T-TTGAA-G---CAC-TGATT--GTTTAAGA----TG-TT----TT----------A------------AACT----------TGTCAAAGTTT-C--ATTT-ACGC--GGTTTTGTTTA--CAGA--C-TTCCGACAGTCAGGTA-CA-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATT-TACAACAGTG-AT----GTATG---TGGCGT-GTAT-CGTAATCGGTA-GCG-CG-TCA-GACTTGCATGATGA-GG-ATCCCG---TTCAAATCA--G----AAG--GAGC-GTAAT----------TTTTTTTTTTTTTTTTTTA---A------TTCTTACA-ATTTATT--TCCCC-ATTTAGATCA-CCAACA-AAT-GGGT-TT-CCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACA----------A------TATT---------------GTGTTT--GTG-CAGT-A-C------TTTGGAAATAT----GAGCAT--TA-AC------------TGTCT-T-AGTCTGAATTTTGATC-AT-AT-GCAAAGAT-ATGCCAT-TTGGAATTT-TAT----AAT---ATT-ATCTTTC--AAGTT------AAAAATTA------GACT-------------T----------------TTGAAATA--TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCA-TTGC--TA-GCAACCAATATT-AA--AAGATA-GC-AAAGT-A--ATTACA
gi|5 : AGACTACCTTGCT--TGAGCCAA-------------TTGGAGA-GTA--TGCATCACT-AC-TTT-TG----------AT-AT-C-TTACAC---TGA--C-TGC--AA-ATA--TCCT--CTGTA-T-ACGGA----TTATCAA-------TTAT-GCGC-TA-TTTC----------CAAA--CAATTT---CATAA--TTTTTGGAAAA-TA-C--GTGTT-GACATTTTC--TTAACA-TATTATT-TA----GGCGCTTC--ACAATA-CATT--A--CAGATTTA-ACCA-ATA-----AAGGG-CGCATGAATAC-ACG-TG-TAATATAA-CCA-GTC--AAGCCTCATCAGCATGT---TGAAAT-AAAAAAAAAAGATATATAAAATATA-ATCT-TATATACTT--GAATATAAGACA--C---G---TA-TCATG-ATTT---A-AAACACCAT-GCT----TTTAG--AGTCA-TGAG-GT-AT-TAGCT--CTC-----AT-----------------ATC-AACG-CATG-TAA-CAC-AT--TCGTACG--AGGAG-TGGTTTGGG-AG--ATTA-GATACTGCATGAAGTTC---------CTGCATTCTTGCTTC------GTAC-TCTTCAAAT--ATTTC-C--AATGTAGG-CGCCT-AAATTTGATTATATGGT-GGCT-TCTTGAAGG---CAC-TGATT--GTTTAAGA----TG-TTTGTCTT----------GCCAGAT------AACT----------TG-CAAAGTTT-C----TT-ACGC--GGTTTTGTTTA--CAGAACT-TTCTGACAGTCAGGTA-TA-------
gi|9 : gagtcggctcgcgcacgagtAGA-TACCTCTTC-A-GAGGCAA----ATATGCAAATCGGATAGGC-GATGCATCACT-ACCTTT-TGT---------ATTATTCTTTACACA-CTGA--C-GGC--AA-ATAAATCCT--CTGTATTTACG-A----TTAACAAAA----TGTAT--CGC-TA-TTTC----------CAAAA-CAA-TT---CATTAAGTTTTGGGGGGA-AAAT--GTGTT-GATA-TTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC---ATA-----AGGTGCCGCATGAAAAC-ACGAT-GTAATattacgcatcgattgtacgag
gi|10 : gagtcggtctgcggcagcgagtAGACTAC-TTGCT-ATGAGGCAAGCGGAT-------TTGCTGA------TGCATCACT-ACCTTT-TGCGGACTTTTGATTATTC-TTGCAC---TGA--C-TGC--AA-ATAAATCCT--CT--A-TTACG-A----TTATAAAAA---TTTTATC-CGC-T--TATC----------CAAAA-CAATTT---CATCAAGTTTGGGGAGA---AACGTGTGTT-GACATTTTC--ATAACA-TTTT-TT-TAATGAGT
gi|14 : tgagtcggctcgcgcagcgagtAGACTACCTTGCT-ATGAGGCAA----AT-------
gi|8 : gttattgagtcggctcgcgcagtgagtACCACCTTGCTTATGAGGCAA----AT-------TTGGAGAAGTGGATGCAT--CT-ACCT
gi|1 : atAA----AT-------TTG-AGAAG-----GCATCACTTACCTTTCTG----------ATT-TTC-TTACA-A-CTGACACATGCCAAATATAAATCCTATCTGTA-TTAT--ACGAATTAACAAAA---TTTTAT-GCGCATAATTGC----------CAAAAACAATTCTAACATAAA--TTTGGGAAAA-TAAC--GTGTT-GACATTTTCA-AAAACA-TATT-TTATAATGAGACGCTTC--A--ATA-CAGTTAA--CAAAGCTATAC---ATATGAATACGTT-CGCATGAATACAACGAATGTAATATAAACCACGTCAGAAGGCTCATCAGCATGTATATCAAATAAAAAAAAATATAAATAAATAATATATAatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacatatcaaaagacttttagcgctatcttatctatagagcgggacaattttcaataagttttggggaaaataacgtgttggacattttcaaataacagtatatttcatgagtcgcatcaaaatagcatttatccagctatatacgaagtaaaggcgcatatatata
gi|8 : ttgagacggctcgcaacacagccgatagacactgtattagagcattAC--A----T-ATCAAAAGACTTTTA--GCGC-TA-TCTTATCTATAGAGCGGGA-CAATTTT--CAATAAGTTTTGGGGAAAATAAC--GTGTTGGACATTTTCAAATAACAGTATA-TT-TCATGAGTCGCATCAAA--ATAGCATTT-ATCCAGCTATATACGAAGTA-----AAG-G-CGCATATATAT-Acaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatataaagaaaataatatcatatatattgatataaaaacagtatacagtattgaattaaactccagctagcaagtcagtaggtatatagagccctcaaatcagcgacagttacacatcttcatacgaagaatggattgagaattaggatacttcatgaagttccctgagcttctgatctgtacatctacaaataaatattccaaatataggcctatatgagtatatggtaagctaatagaaggcacatgattagtttaatatgttatcttgtcttaactcaagataaactgcaaaagatttaaatttaccgttttgtgtattcaaacattccgactcaggtatcatatcaatcatgcgcaatattgaaacacctttattattgttactaaatttacataggagataaagatatgtgctatgtgtgcataatccttaggcacatcaactcgtatgaaaaggtacccgagcttcaatacggaagtagcagtaattttttctgtattttttttttttttttttatttataaaatttcttataatctacttattcccatgaggatcatccaacaaatgcgtattatcattgcaatgtcagattatttcagaaactatgcacatatacttattataaaatatcacataattgttgtatactaaaggagtatttgagtgcagaactttagaaatatacgagagcataatagactgtctgaaatttttatcataatagcaaataatgacatttgaaatattagaaaaaatattcatcattcgaaagttaaaaattagactttaaagtcttagcattattgaaataatttatgtaatgataaattattgttcataatgatttgatacgcttgctatagcaaccaaattaaacaagatagcaaaagtagtattagcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|3 : ataccaccttgcttatgaggcaaatttggagaagtggatgcatctacctatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaACA-TATT-TT-TAATGAGTCGCTTC-----ATA-CATTC-A--
gi|12 : gaaataaaaaaattatatatatatattgaatataagacacgtgtcatattgattgtaaaacacatgcttttagagtcaaATGT---TGAAAT-AAAAAAATTATATATATATA---------------TA-TT--GAATATAAGACA--CGT-GT--CA-TATTG-ATTG---TAAAACACCAT-GCT----TTTAG--gagagtatcagacgcatgtacacattcgtacgaaggagatgattgggagaattaggatactgcatgaagttccctgcagttctgcttcgtactcttcaaataatttccaatgtaggtcgcctaaatgatgatatggtggcttattgaggcacaattgtttaagatgttttgttttactcagataacttgtcaaagttaataaacttggttgtttacaaatttccgaagtcaggtatgtaggtcaaatcatgcccaatttttgtttataatttacacgctggtatatactgacgtggtggcgtaataggtaccgtcgtcatgatgagggacccggttcaactcctgaaacggcggggtttttttattcttatattttatttccccttttagatcaacagcatatggtttttcatgcatttcagattgatttgataacattgtaatatacgtattatagattagacacaatattagttgttgctaaggagtatttgtgcagtatctttggaaatatgagcattaactactttaaataatgtcttaagtttgaattttgatcatatgcaagatgatgccatttggaatttataaaaaaattatcatttaagtttaaaaaattagattttaagtctttgcatttgaaatatttatgtaaatgaatgattattgttctatgtttgatgcgttgctaggcatccaatattaaatgatagcaaaataattacatatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|3 : ggctagttgaaGAAAT-AAAAAAATTATATATATAT-----------------A-TT--GAATATAAGACA--C---GTGTCA-TATTG-ATTG---T-AAAACACAT-GCT----TTTAG--AGTCAATGAATGT-AT-GAAGCGACTC-----ATTAAAAATATGTGAGAGTATCAGACG-CATG-T-A-CAC-AT--TCGTACG-AAGGAGATGATT--GGGAG-AATTAGGATACTGCATGAAGTTCCCTGCAGTTCTG--------CTTC------GTAC-TCTTCAAAT-AATTTC-C--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-TATTGAG-G---CAC--AATT--GTTTAAGA----TG-TT----TT----------GTTTTACTCAGATAACT----------TGTCAAAGTT--A--ATAA-ACTT--GGTT--GTTTA--CAAA--T-TTCCGA-AGTCAGGTA-TG-------TAGGTCAAATCAT-GC-CCA-ATT--------TTTGT--TTAT-----AATT-TAC-ACGCTG-GT----ATATAC--TGACGTGGTGG-CGTAATAGGTA-CCGTCG-T---------CATGATGAGGG-ACCCGG---TTCAACTCCT-G----AAA--CGGC-GGGGT----------TTTTTT----------------A------TTCTTATA-TTTTATT--TCCCC-TTTTAGATCA-ACAGCA-TAT-GGTT-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-ATTGTA-AT-ATACGTATTATAGAT-TAGACACA----------A------TATTAGTTGTTGCTAAGGAGTATTT--GTG-CAGT-ATC------TTTGGAAATAT----GAGCAT--TA-ACTACTTTAAATAATGTCT-TAAGTTTGAATTTTGATC-AT-AT-GC-AAGATGATGCCAT-TTGGAA-TT-TATAAA-AAA---ATT-ATCATTT--AAGTTTA----AAAAATTA------GATTTTAAGTCTTTGCAT----------------TTGAAATAT-TTATGTAAATGAATGA-TT-ATTGTTC-T-ATG-TTTGATGCG-TTGC--TAGGCATCCAATATT-AA--ATGATA-GC-AAAAT-A--ATTACA
gi|1 : TTATATAAAGAAAATA-ATATC-ATATATA-TT--GA-TATAAAA-A--C---AG--TA-TACAGTATTGAATT-AAACTCCA--GCT-------AGCAAGTCAGT-AG-GT-ATATAGAGCCCTC-----AA-----------------ATC-AGCGACAGT-T-A-CAC-ATCTTCATACG-AAGAA--TGGAT--TG-AG-AATTAGGATACTTCATGAAGTTCC--------CTGAG------CTTCTGATCTGTACATCTACAAATAAATATT-CCAAATATAG---GCCT-ATA--TGAGTATATGGTAAGCTAA-TAGAAGG---CACATGATTA-GTTTAATA----TG-TTATC-TT----------GTCTT--------AACTCAAGATAAACTGCAAAAGATT-TAAATTT-AC-C---GTTTTGTGTATTCAAA--CATTCCGAC--TCAGGTATCA-------TA--TC-AATCAT-GCGCAATATTGAAACACCTTTATTATTGTTACTAAATT-TACATAGGAG-ATAAAGATATG---TGCTAT-GTGTGCATAATCCTTAGGCA-CA-TCA--ACTCGTATGAAAA-GG-TACCCGAGCTTCAATACG--G----AAG--TAGCAGTAATTTTTTCTGTATTTTTTTTTTTTTTTTTTATTTATAAAATTTCTTATA-ATCTACTTATTCCC-ATGAGGATCATCCAACA-AAT-GCGTATTATCATTGCAATGTCAGATT-ATTTCAG--A-AACTA-TGCACAT-ATACTTATTATAAA-ATA-TCACATAATTGTTGTA------TACTAAAGGA---------GTATTTGAGTG-CAGA-A-C------TTTAGAAATATACGAGAGCATAATAGAC------------TGTCT-G-A-----AATTTTTATC-ATAATAGCAAATA--ATGACAT-TTGAAATAT-TAGAAAAAAT---ATTCATCATTCGAAAGTT------AAAAATTA------GACT-------------TTAAAGTCTTAGCATTATTGAAATAATTTATGT-AATG-ATAAATT-ATTGTTCATAATGATTTGATACGCTTGCTATA-GCAACCAA-ATT-AAACAAGATA-GCAAAAGT-AGTATTAtatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|7 : ttgagacggctcgcaacacagccgatagacactgtattagagcattaaatttgagaaggcatcacttacctttctgattttcttacaactgacacatgccaaatataaatcctatctgtattatacgaattaacaaaattttatgcgcataattgccaaaaacaattctaacataaatttgggaaaataacgtgttgacattttcaaaaacatattttataatgagacgcttcaatacagttaacaaagctatacatatgaatacgttcgcatgaatacaacgaatgtaatataaaccacgtcagaaggctcatcagcatgtatatcaaataaaaaaaaatataaataaataatatatacaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttTA-TTTCGAATATAAGACA--CTAAAT--CAATATTG-ATTG---TAAAACAGCACAGCTTTACTTTAGA-AGTCTGTAGG-AT-CT-CAG----CCCTAGTAAT-----------------AC--AAC--CATGAA-A-CACAAT--TCG-ATGAAAGGAGgcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|4 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacaAATATA-GACAGCT---AT--CA-TATTG-ATTG---T-AAAA-ACAT-GCC----TTTAG--AGTCAGTGAG-GTCAT-T-G----CCC-----CTCCCAAA-----------ATCAGACG-CATG-T-AACAC-AT--TCGTACG-AAGGAGATGGTT--GG-AGAAATTAGGATA-TGCATGAAGTTC---------CTGCAGTTCTGCTTC------GTAC-TCTTCAAAT-AAT-TC-C--AATGTAGGT-GCCT-GAA--TGATGATATGGT-GGCT-A-TTGAA-AGGCCAC-TGATT--GTTTAAGAGTTTTG-TC----TTATCTCAGATAA------------AACT----------TGTTCAAGTTTCC--ATTTAACGC--G--TTTGTTTA--CAAA--C-TTCCGACAGTCGTGTA--A-------TAtttcacccccatggccgcagttctccatgtttcaatgtagggcgcctaaaatgacgatctagtggctattgaaggctaatggttgggtttaagatgatttttttcttactcatcttttcttactcagacaaagtctgaataacctgtcaaacgtgcggttagcttttttttgtttacaaacttccggaagtcaggtacgcgtatgctaggtcaaatcatagcccaatcaaatgtcatacccagtcaa
gi|7 : ATGTTTC--AATGTAGGGCGCCTAAAA--TGACGATCTAGT-GGCT-A-TTGAA-GGC-TAA-TGGTTGGGTTTAAGA----TGATT----TT----------atttacacatcgcaggtatgagatggggtggcgacatcggtagcgcggtcaagactgtatgcagagggtcccggttcaaatccctgaagctggcgttattttttttttaatcttatatatttatttcccccatttagatcaccacaaatggggttttcatgcatttcagattgatttgcaatacatgcaatcatagtattatagatatagtcacaaattggttgttctttaaggagtatttgtgccagtaccttgatcttggaaatatgagcatcactgcttagtctgaatttgaatcaatatgcaagataatgccatcttggaatttataacaaaattatcattcaagttgaaaaaaaaaatgacttttcaagtcttgcaattgaaatatttatgtaaatgaataattattgtcaatatgtttgatgccttgctaggcaaccaatattaaaaagatatgcagagtaaattacattttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|7 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacatatttcgaatataagacactaaatcaatattgattgtaaaacagcacagctttactttagaagtctgtaggatctcagccctagtaatacaaccatgaaacacaattcgatgaaaggagtttcacccccatggccgcagttctcc------------AACC----------TGTCAAACGTG-C--GGTT-A-GCTTTTTTTTGTTTA--CAAA--C-TTCCGGAAGTCAGGTA-CGCGTATGCTAGGTCAAATCATAGC-CCAtttcttactcatcttttcttactcagacaaagtctgaataacctgtcaaacgtgcggttagcttttttttgtttacaaacttccggaagtcaggtacgcgtatgctaggtcaaatcatagcccaatcaaatgtcatacccagtcaa
gi|6 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacatatttcgaatataagacactaaatcaatattgattgtaaaacagcacagctttactttagaagtctgtaggatctcagccctagtaatacaaccatgaaacacaattcgatgaaaggagtttcacccccatggccgcagttctccatgtttcaatgtagggcgcctaaaatgacgatctagtggctattgaaggctaatggttgggtttaagatgatttttttcttactcatcttttcttactcagacaaagtctgaatTTTGT--TTAT-----AATTACATAAC--TG-AA----GTG-G---TGG---------CGTAATAGGTA-GCGTTG-TCA-GGTTCACATGCAGACGGTGTCCGG---TTCAAATCC--GTTGCACG--GA----TGAT----------TTTTTTTTT-------------A------TTATTAGA-ATTTATT--TCCCC-TTTTAGATCA-CCAGTATAAT-GGTT-TT-TCA-TGC-CTTTCAGATTTATTT--G--ATAAC-A-TGTT-TT-ATACGTATTATAGATATAGTCACA----------A------TATTGGTTGTTGCTAAGGAGTATTT--GTT-CAGTAA-C------TATGGAAATAT----GAGCAT--TA-ACCACTTTAAATAATGTCTAA-AGTTTGAATTCTGATC-AT-AT-A-AAGGGTAATACAAT-TTGGAATTTATAA----AAT---AGA-ATCATTA--AAGTTAAAAA-AAAAATTAAGTCTTGAC--------------T----------------TTGAGATAT-TTATGTAAATGAATAATGT-ATTGTTCAT-ATG-TTTGATGCG-TTGC--TAGGCAACCAATATT-GA--AATATA-GC-AAAGTAA--ATTACAatcaaatgtcatacccagtcaa
gi|4 : tAT-----AATT-TACA-CATCGCAG----GTATGAGATGGGGT-GG---CGACATCGGTA-GCG-CGGTCAAGACT-GTATGCAGA-GG-GTCCCGG--TTCAAATCCCTG----AAGCTG-GC-GTTAT----------TTTTTTTTT---------A---A------T-CTTATATATTTATT--TCCCCCATTTAGATCA-CC-ACA-AATGGGGT-TT-TCA-TGC-ATTTCAGATTGATTT--GCAAT-AC-A-TGCA-ATCATA-GTATTATAGATATAGTCACA----------AATTGGTTGTTCTTTAAGGA------GTATTT--GTGCCAGT-A-CCTTGATCTTGGAAATAT----GAGCAT--C--AC------------TG-CT-T-AGTCTGAATTTGAATCAAT-AT-GC-AAGATAATGCCATCTTGGAA-TT-TAT----AACAAAATT-ATCATTC--AAGTTGAAAAAAAAAAT--------GACT-------------TTTCAAGTCTTGCAA--TTGAAATAT-TTATGTAAATGAATAA-TT-ATTGTCAAT-ATG-TTTGATGCC-TTGC--TAGGCAACCAATATTAAA--AAGATATGC-AGAGTAA--ATTACAtatattctttttcttttacacacatgtgcactactactggaataggaatgagtaaattttaagagggagccataaatgtct
gi|13 : aatatagacagctatcatattgattgtaaaaacatgcctttagagtcagtgaggtcattgcccctcccaaaatcagacgcatgtaacacattcgtacgaaggagatggttggagaaattaggatatgcatgaagttcctgcagttctgcttcgtactcttcaaataattccaatgtaggtgcctgaatgatgatatggtggctattgaaaggccactgattgtttaagagttttgtcttatctcagataaaacttgttcaagtttccatttaacgcgtttgtttacaaacttccgacagtcgtgtaT-GCAA-GATGATGCCAT-TTGGAA-TT-TATAAAAAAA---ATT-ATCATTT--AAGTTA-----AAAAATTA------GACT-------------T----------------Tttttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|11 : ACA-------------T----------------TTGAAATAG-TTATGAAAATGAATAATTGGATTGTTAAT-ATG-TTTGATGCG-TTTC--TAGGCAACGAATGTT-AA--AAGATA-TG-AAAGTAA--ATTACA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTTATACACATGTGCACTACTACTGGAATAGGAATAAGTAATTTT
Unaligned ( gi|16 ): TACAAAGTCTCTTTCATCGGAGTAAGATTTAAAAAAAA
Alignments
lowQualScore : 2222222222222 11111 5555555555 11 111 11 11 11 111 2222222222 3333 222 11111 11 22222 111 11 1 22 111 44444444444444444444 3333333333333 1 1111 11 888888888888888888888888888 1 11 11 33333 11 11 1 11 111 999999999999999999999999999999999999999999999 111111111 555555555555555555555555 1 3333333 1 11 5555555 11 22222 444444444444444444444444444444444 11 111111 11 22 77777777777777777 222222 444444444444 11111 1 222222222 11 22222222 1111 5555555555555 1 33333 2222222222 7777777777777777777777 1
lowQualScore : 6 3333333333333 2 5 55555 6 8 5555555555 0 8 8 88 8 444 11 8 0 11 88 11 8 8 1 111 99 6 6 9999999999 6 0000 1 2 6 3 99 6 111 6 6 6 33333 8 88 11 33333 444 888 8 33 0 7 6 22 1 777 8 77777777777777777777 5 3333333333333 5 0 1 333 55 2222 33 1 1 6 6 6 444444444444444444444444444 7 6 6 3 6 99 6 5 11 8 8 0 55 00000 8 0 8 8 99 33 55 6 6 6 6 6 6 55 99 111 555555555555555555555555555555555555555555555 777777777 000000000000000000000000 99 6 3 2 6 2222222 2 3 0 77 6666666 33 00000 8 333333333333333333333333333333333 1 44 999999 1 22 99 1 11 8 5 11 99 8 55555555555555555 0 77 0 333333 8 111111111111 99 8 6 8 99 8 8 8 8 5 22222 11 8 8 8 8 11 0 0 2 555555555 11 8 99999999 7777 11 4444444444444 0 8 1 8 1 8 8 6 7 9 6 6 7 7 4 6 99 55555 99 5555555555 6666666666666666666666 6 3 1 6 6 6 6 77 6 99 6 6 777
lowQualScore : . ............. . . ..... . . .......... . . . .. . ... .. . . .. .. .. . . . ... .. . . .......... . .... . . . . .. . ... . . . ..... . .. .. ..... ... ... . .. . . . .. . ... . .................... . ............. . . . ... .. .... .. . . . . . ........................... . . . . . .. . . .. . . . .. ..... . . . . .. .. .. . . . . . . .. .. ... ............................................. ......... ........................ .. . . . . ....... . . . .. ....... .. ..... . ................................. . .. ...... . .. .. . .. . . .. .. . ................. . .. . ...... . ............ .. . . . .. . . . . . ..... .. . . . . .. . . . ......... .. . ........ .... .. ............. . . . . . . . . . . . . . . . . .. ..... .. .......... ...................... . . . . . . . .. . .. . . ...
lowQualScore : 7 1111111111111 5 7 22222 7 0 2222222222 8 0 0 66 0 000 00 0 8 00 88 00 0 0 7 777 22 7 7 2222222222 7 3333 0 5 7 5 22 7 555 7 7 7 00000 0 88 00 66666 000 666 0 22 0 3 7 33 0 555 0 55555555555555555555 7 7777777777777 7 7 4 666 99 1111 66 0 0 7 7 7 555555555555555555555555555 3 7 7 3 7 22 7 6 00 0 0 8 88 66666 0 8 0 8 22 88 88 7 7 7 2 7 7 88 22 777 888888888888888888888888888888888888888888888 000000000 222222222222222222222222 22 7 3 5 7 5555555 5 2 0 33 3333333 88 00000 0 000000000000000000000000000000000 0 88 000000 4 44 44 0 00 8 0 22 00 0 22222222222222222 8 00 8 000000 0 000000000000 00 0 4 0 00 0 0 0 0 0 00000 66 0 0 0 0 66 8 8 0 666666666 00 0 00000000 0000 66 4444444444444 8 0 0 0 8 0 0 7 3 8 3 7 3 3 0 7 22 55555 22 8888888888 7777777777777777777777 7 2 7 7 7 7 7 77 7 22 7 7 555
consensus : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTAT-TCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTAT-GCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAACGTGT--T-GACATTTTC-AATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-ATG-TAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACA--C---GT-T-C-A-TATTGATTGT-AAACACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------ATCAGACG-CATG-TA-CAC-AT--TCGTACG-AAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA-TNTCC--AATGTAGGTCGCCTAAA--TGATGATATGGTG-GC-T-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTT----------ACT-----A----------ACTTGT----------CAAAGTTT-CA--TTT-AC-----------GCGG---------TTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGT--TTAT-----AATT-TACAACGNTG----ANGTATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCGG--TTCAAATCCN-GAAGC-GGC-G--TGATTTTTT-T----TTTTTTTTTTAATTCTTAT------A-ATTTATT------------TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTG-TTGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAATTTTATAAAAAA-ATT-ATCATTC--AAGTT--AAAAAA--AAATT---A------GACT-----T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
Reference ( family-4496 ) : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TGC---------ATTAT-TCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTAT-GCGC-TA-TTTC----------CAAAA-CAATTTT--CATNAAGTTTTGGG-AAAATAACGTGT--T-GACATTTTC-AATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-ATG-TAATATAAACCACGTCAGAAGNCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACA--C---GT---C-A-TATTGATTGT-AAACANCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------ATCAAACG-CATG-TA-CAC-AT--TCGTACG-AAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAGTTCCCTGC-G-TCCTGCTTCGTAC-TCTTCAAATAA-TNTCC--AATGTAGGTCGCCTAAA--TGATGATATGGTG-GC-T-ATTGAAGGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTT----------A-------A----------ACTTGT----------CAAAGTTT-CA--TTT-AC-----------GCGG---------TTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTGAAACACCTTTGT--TTAT-----AATT-TACAACGNCG----ANGTATG---TG--GCGTG-TG-CGTAATNGGTAGCGT-CGTCA-GACTCGCATGNAGAGGGT-CCNGG--TTCAANTCCC-GAAGN-AGC-G--TGA------------TTTTTTTTTTAATTCTTAT------A-ATTTATT------------TCCCCN-TTTAGATCA-CCAGCA-AATGGN-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTAGTTG-NTGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTTTGAATTTTGATC-AT-AT-GCAAAGATGATGCCAT-TTGGAATTTTATAAAAAANATT-ATCATTC--AAGTT-AAAAAAA--AAATT---A------GACT-----T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
gi|1 : AA----AT-------TTG-AGAAG------GCATCACTTACCTTTCTG----------ATT-T-TCTT-ACA-A-CTGA-CACATGCCAAATATAAATCCTATCTGTATT-ATACG-AATTAACAAAA---TTTTAT-GCGCATAATTGC----------CAAAAACAATTCTAACATAAA--TTTGGG-AAAATAACGTGT--T-GACATTTTC-AAAAACA-TATT-TTATAATGAGACGCTTC--A--ATA-CAGTTAA--CAAAGCTATAC--ATATGAATACGTT-CGCATGAATACAACGAATG-TAATATAAACCACGTCAGAAGGCTCATCAGCATGTATATCAAATAAAAAAAAATATAAATAAATAATATATA
gi|1 : ttgagacggctcgcaacacagccgatagacactgtattagagcattTTATATAAAGAAAATA-ATATCAT-A--TATA-TTGATATA-AAAACA------GTATAC-AGTATTGAAT-T-AAACTCCA--GCT-------AGCAAGTCAGT-AG-GT-ATATAGAGCCCTCA-------A-----------ATCAG-CGACAGT-TA-CAC-ATCTTCATACG-AAGAA--TGGAT--TG-AG-AATTAGGATACTTCATGAAGTTCCCTGA-GCTTCTGATCTGTACATCTACAAATAAATATTCCAAATATAGG---CCTATA--TGAGTATATGGTAAGC-T-AATAGAAGG-CACATGATTA-GTTTAATATG--TTATCTTGTCTT----------A-------ACTCAAGATAAACT-GC----------AAAAGATT-TAAATTT-AC------------CG----------TTTTGTGTATTCA-AACATTCCGAC--TCAGGTATCA-------TA--TCAA-TCAT-GCGCAATATTGAAACACCTTTATTATTGTTACTAAATT-TACATAGGAGATAAAGATATG---TGCTATGTG-TG-CATAATCCTTAG-GCACATCA--ACTCGTATGAAAAGGTA-CCCGAGCTTCAA-TACG-GAAGT-AGCAG--TAATTTTTTCTGTATTTTTTTTTTTTTTTTTTATTTATAAA-ATTTCTTATAATCTACTTATTCCCA-TGAGGATCATCCAACA-AATGCG-TATTATCATTGCAATGTCAGATT-ATTTCAG--A-AACTA-TGCACAT-ATACTTATTATAAA-ATA-TCAC-ATAATTGTTGTATAC--TAAAGGAGTATTTGAGTG-CAGAA-C------TTTAGAAATATACGAGAGCA-TAA------TAGAC--TGTC-TGA------AATTTTTATC-ATAATAGCAA--ATAATGACAT-TTGAAATATTAGAAAAAATATTCATCATTCGAAAGTT------AA--AAATT---A------GACT-----TTAAAGTCTTAGCATTATTGAAATAATTTATGT-AATG-ATAAATT-ATTGTTCATAATGATTTGATACGCTTGCTATAGCAACCAA-ATT-AAACAAGATA-GCAAAAGTAGTATTAcaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatataaagaaaataatatcatatatattgatataaaaacagtatacagtattgaattaaactccagctagcaagtcagtaggtatatagagccctcaaatcagcgacagttacacatcttcatacgaagaatggattgagaattaggatacttcatgaagttccctgagcttctgatctgtacatctacaaataaatattccaaatataggcctatatgagtatatggtaagctaatagaaggcacatgattagtttaatatgttatcttgtcttaactcaagataaactgcaaaagatttaaatttaccgttttgtgtattcaaacattccgactcaggtatcatatcaatcatgcgcaatattgaaacacctttattattgttactaaatttacataggagataaagatatgtgctatgtgtgcataatccttaggcacatcaactcgtatgaaaaggtacccgagcttcaatacggaagtagcagtaattttttctgtattttttttttttttttttatttataaaatttcttataatctacttattcccatgaggatcatccaacaaatgcgtattatcattgcaatgtcagattatttcagaaactatgcacatatacttattataaaatatcacataattgttgtatactaaaggagtatttgagtgcagaactttagaaatatacgagagcataatagactgtctgaaatttttatcataatagcaaataatgacatttgaaatattagaaaaaatattcatcattcgaaagttaaaaattagactttaaagtcttagcattattgaaataatttatgtaatgataaattattgttcataatgatttgatacgcttgctatagcaaccaaattaaacaagatagcaaaagtagtattagcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|10 : ttgagacggctcgcaacacagccgatagacactgtattagagcattaaatttgagaaggcatcacttacctttctgattttcttacaactgacacatgccaaatataaatcctatctgtattatacgaattaacaaaattttatgcgcataattgccaaaaacaattctaacataaatttgggaaaataacgtgttgacattttcaaaaacatattttataatgagacgcttcaatacagttaacaaagctatacatatgaatacgttcgcatgaatacaacgaatgtaatataaaccacgtcagaaggctcatcagcatgtatatcaaataaaaaaaaatataaataaataatatatacaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttAGACTAC-TTGCT-ATGAGGCAAGCGGAT-------TTGC-----T-GA-TGCATCACT-ACCTTT-TGCGGACTTTTGATTAT-TCTT-GCAC---TGA-C---TGC--AA-ATAAATCCT--CT--ATT-A--CG-A-TTATAAAAA---TTTTAT-CCGC-T--TATC----------CAAAA-CAATTT---CATCAAGTTTGGGG-AGAA--ACGTGTGTT-GACATTTTC--ATAACA-TTTT-TT-TAATGAGTgcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|11 : tgagtcggctcgcgcagcgagtACA-----T----------------TTGAAAT-AGTTATGAAAATGAATAATTGGATTGTTAAT-ATG-TTTGATGCG-TTTCTA-GGCAACGAATGTT-AA--AAGATA-TG-AAAGTAA-ATTACA
gi|12 : ttttagtcttATGT---TGAAAT-AAAAAAATTATATATATATA-----------------TA-TTGA-ATATAAGACA--C---GTGT-C-A-TATTGATTGTAAAACACCAT-GCT----TTTAG--tttttttttaaattcataaacatgtgcaccactactgggataggaatgagtcaatttgatgaggagaccataaatgtc
gi|13 : ggctagttgaaT-GCAA-GATGATGCCAT-TTGGAATTT-ATAAAAAAAATT-ATCATTT--AAGTT-----AAA--AAATT---A------GACT-----T----------------T
gi|14 : AGACTACCTTGCT-ATGAGGCAA----AT-------
gi|2 : gttattgagtcggctcgcgcagtgagtAGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-AAATGCATCACT-ACCTTT-TG----------ATTAT-TCTT-ACACATCTGAGC---TGC--AA-ATAAATCCT--CTGTATT-A--C--A-TTATCAAGA---TTTTATTGCGC-TA-TTTC----------CAAAA-CAATTT---CATAAAGTTTTGGG-GGAATAACGTGT--T-GACGTTTTC-A-TAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A--TAAG---GTG-CGCATGAATAC-ACG-ATGGTAATATAAACCACGTC--AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATATTATATATC-T-ATGTGTA-TTGA-ATATAAGACA--C---GT---T-A-TATTGATTGT-AAACTCCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT------------------ATCGAACG-CATG-TA-CAC-AT--TCGTACG-AAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAAT---CT----------CTTCGTAC-TCTTCAAATAA-TGTCC--AATGTAGGTCGCCTAAA--TGATGATATGGTG-GC-T-TTTGAA--G-CAC-TGATT--GTTTAAGATG--TT--------TT----------A-------A----------ACTTGT----------CAAAGTTT-CA--TTT-AC-----------GCGG---------TTTTGTTTA--CA-GAC-TTCCGACAGTCAGGTA-CA-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGT--TTAT-----AATT-TACAACAGTG----ATGTATG---TG--GCGTG-TATCGTAATCGGTAGCG--CGTCA-GACTTGCATGATGAGGAT-CCC-G--TTCAAAT-CA-GAAGG-AGC-G--TAATTTTTTTTT---TTTTTTTTTTAATTCTTAC------A-ATTTATT------------TCCCCA-TTTAGATCA-CCAACA-AATGGG-T-TT-CCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATT-------------------GTGTTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAAC------------TGTC-TTA-GTCTGAATTTTGATC-AT-AT-GCAAAGAT-ATGCCAT-TTGGAATTTTAT----AATATT-ATCTTTC--AAGTT------AA--AAATT---A------GACT-----T----------------TTGAAAT-A-TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCA-TTGCTA--GCAACCAATATT-AA--AAGATA-GC-AAAGT-A-ATTACA
gi|3 : GAAAT-AAAAAAATTATATATATATA--------------------TTGA-ATATAAGACA--C---GTGT-C-A-TATTGATTGT-AAAACACAT-GCT----TTTAG--AGTCAATGAATGT-AT-GAAGCGACTCATTAAAA-ATATGTGAGAGTATCAGACG-CATG-TA-CAC-AT--TCGTACG-AAGGAGATGATT--GGGAG-AATTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA-TTTCC--AATGTAGGTCGCCTAAA--TGATGATATGGTG-GC-TTATTGA--GG-CAC--AATT--GTTTAAGATG--TT---TTGTTTT----------ACTCAGATA----------ACTTGT----------CAAAGTT--AA--TAA-AC-----------TTGG---------TT--GTTTA--CA-AAT-TTCCGA-AGTCAGGTA-TG-------TAGGTCAAATCAT-GCCCA--ATT--------TTTGT--TTAT-----AATT-TACA-CGCTG----GTATATAC--TG--ACGTGGTGGCGTAATAGGTACCGT-CGTCA---------TGATGAGGGA-CCCGG--TTCAACTCCT-GAAAC-GGC-G--GGG------------TTTTTTT----ATTCTTAT------A-TTTTATT------------TCCCCT-TTTAGATCA-ACAGCA-TATGGT-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-ATTGTA-AT-ATACGTATTATAGAT-TAGACACAATATTAGTTG-TTGC--T-AAGGAGTATTT--GTG-CAGTATC------TTTGGAAATAT----GAGCATTAACTACTTTAAATAATGTCTTAA-GTTTGAATTTTGATC-AT-AT-GC-AAGATGATGCCAT-TTGGAA-TTTATAAAAAA-ATT-ATCATTT--AAGTT-TAAAAAATTAGATTTTAA------GTCTTTGCAT----------------TTGAAAT-ATTTATGTAAATGAATGA-TT-ATTGTTC-T-ATG-TTTGATGCG-TTGCTA-GGCATCCAATATT-AA--ATGATA-GC-AAAAT-A-ATTACA
gi|4 : A-ATATA-GACAGCT---AT---C-A-TATTGATTGT-AAA-AACAT-GCC----TTTAG--AGTCAGTGAG-GTCAT-T-G----CCCCTCCCAA-A-----------ATCAGACG-CATG-TAACAC-AT--TCGTACG-AAGGAGATGGTT--GG-AGAAATTAGGATA-TGCATGAAGTT-CCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA-T-TCC--AATGTAGGT-GCCTGAA--TGATGATATGGTG-GC-T-ATTGAAAGGCCAC-TGATT--GTTTAAGA-G--TT---TTGTCTTATCTCAGATAA-------A----------ACTTGT----------TCAAGTTTCCA--TTTAAC-----------GCG-----------TTTGTTTA--CA-AAC-TTCCGACAGTCGTGTA-tatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|4 : AT-----AATT-TACA-CATCGC---AGGTATGAGATG--GGGTG--G-CGACATCGGTAGCGC-GGTCAAGACT-GTATGCAGAGGGT-CCCGG--TTCAAATCCCTGAAGCTGGC-G--TTA------------TTTTTTTTTTAAT-CTTAT------ATATTTATT------------TCCCCCATTTAGATCA-CCA-CA-AATGGGGT-TT-TCA-TGC-ATTTCAGATTGATTT--GCAAT-AC-A-TGCA-ATCATA-GTATTATAGATATAGTCACAA-ATTGGTTG-TT-CTTT-AAGGAGTATTT--GTGCCAGTA-CCTTGATCTTGGAAATAT----GAGCAT----CAC---------TG-C-TTA-GTCTGAATTTGAATCAAT-AT-GC-AAGATAATGCCATCTTGGAA-TTTATAACAAA-ATT-ATCATTC--AAGTTGAAAAAAA--AAAT-----------GACT-----TTTCAAGTCTTGCAA--TTGAAAT-ATTTATGTAAATGAATAA-TT-ATTGTCAAT-ATG-TTTGATGCC-TTGCTA-GGCAACCAATATTAAA--AAGATATGC-AGAGTAA-ATTACAataatttacacatcgcaggtatgagatggggtggcgacatcggtagcgcggtcaagactgtatgcagagggtcccggttcaaatccctgaagctggcgttattttttttttaatcttatatatttatttcccccatttagatcaccacaaatggggttttcatgcatttcagattgatttgcaatacatgcaatcatagtattatagatatagtcacaaattggttgttctttaaggagtatttgtgccagtaccttgatcttggaaatatgagcatcactgcttagtctgaatttgaatcaatatgcaagataatgccatcttggaatttataacaaaattatcattcaagttgaaaaaaaaaatgacttttcaagtcttgcaattgaaatatttatgtaaatgaataattattgtcaatatgtttgatgccttgctaggcaaccaatattaaaaagatatgcagagtaaattacattttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|5 : aatatagacagctatcatattgattgtaaaaacatgcctttagagtcagtgaggtcattgcccctcccaaaatcagacgcatgtaacacattcgtacgaaggagatggttggagaaattaggatatgcatgaagttcctgcagttctgcttcgtactcttcaaataattccaatgtaggtgcctgaatgatgatatggtggctattgaaaggccactgattgtttaagagttttgtcttatctcagataaaacttgttcaagtttccatttaacgcgtttgtttacaaacttccgacagtcgtgtaAGACTACCTTGCT--TGAGCCAA-------------TTGGAGA-GT--A-TGCATCACT-AC-TTT-TG-------------ATATCTT-ACAC---TGA-C---TGC--AA-ATA--TCCT--CTGTAT--A--CGGA-TTATCAA-------TTAT-GCGC-TA-TTTC----------CAAA--CAATTT---CATAA--TTTTTGG-AAAATA-CGTGT--T-GACATTTTC-T-TAACA-TATTATT-TA----GGCGCTTC--ACAATA-CATT--A--CAGATTTAACC--A-ATAAA---GGG-CGCATGAATAC-ACG--TG-TAATATAA-CCA-GTCA--AGCCTCATCAGCATGT---TGAAAT-AAAAAAAAAAGATATATAAAATATA-ATC-TTA--TATACTTGA-ATATAAGACA--C---GT-----A-TCATGATTTA-AAACACCAT-GCT----TTTAG--AGTCA-TGAG-GT-AT-TAG----CTC-T---CA-T-----------ATCAA-CG-CATG-TAACAC-AT--TCGTACG-A-GGAG-TGGTTTGGG-AG-A-TTAG-ATACTGCATGAAGTT-CCTGC-ATTCTTGCTTCGTAC-TCTTCAAAT-A-TTTCC--AATGTAGG-CGCCTAAATTTGATTATATGGTG-GCTT-CTTGAA-GG-CAC-TGATT--GTTTAAGATG---T---TTGTCTT----------GCCAGAT-A----------ACTTG-----------CAAAGTTT-C----TT-AC-----------GCGG---------TTTTGTTTA--CAGAACTTTCTGACAGTCAGGTA-ttttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|6 : gagtcggctcgcgcacgagtTTTGT--TTAT-----AATTACATAAC--TG----AAGT-------G--GTG----G-CGTAATAGGTAGCGT-TGTCA-GGTTCACATGCAGACGGTGTCCGG--TTCAAATCC--GTTGC-A-C-GGATGA------------TTTTTTTTTTA-TTATTAG------A-ATTTATT------------TCCCCT-TTTAGATCA-CCAGTATAATGGT-T-TT-TCA-TGC-CTTTCAGATTTATTT--G--ATAAC-A-TGTT-TT-ATACGTATTATAGATATAGTCACAATATTGGTTG-TTGC--T-AAGGAGTATTT--GTT-CAGTAAC------TATGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TAAAGTTTGAATTCTGATC-AT-AT-A-AAGGGTAATACAAT-TTGGAATTT-ATAAAATAGA---ATCATTA--AAGTT-AAAAAAA--AAATT---AAGTCTTGACT-----T----------------T-GAGAT-ATTTATGTAAATGAATAATGT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-GA--AATATA-GC-AAAGTAA-ATTACAtaattacgcatcgattgtacgag
gi|7 : t-A--TATT-TCGA-ATATAAGACA--CTAAAT---CAA-TATTGATTGTAAAACAGCACAGCTTTACTTTAGA-AGTCTGTAGG-AT-CT-CAG----CCC-T---AGTA-----------ATACAAC--CATGAAA-CACAAT--TCG-ATGAAAGGAGtatattctttttcttttacacacatgtgcactactactggaataggaatgagtaaattttaagagggagccataaatgtct
gi|7 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacTTC--AATGTAGGGCGCCTAAAA-TGACGATCTAGTG-GC-T-ATTGAAGGC-TAA-TGGTTGGGTTTAAGATGATTT---TTTTCTT----------ACTC----A----------TCTTTTCTTACTCAGACAAAGTCT-GA--ATA-ACCTGTCAAACGTGCGGTTAGCTTTTTTTTGTTTA--CA-AAC-TTCCGGAAGTCAGGTA-CGCGTATGCTAGGTCAAATCATAGCCCA-tttcacccccatggccgcagttctccatgtttcaatgtagggcgcctaaaatgacgatctagtggctattgaaggctaatggttgggtttaagatgatttttttcttactcatcttttcttactcagacaaagtctgaataacctgtcaaacgtgcggttagcttttttttgtttacaaacttccggaagtcaggtacgcgtatgctaggtcaaatcatagcccaatcaaatgtcatacccagtcaa
gi|8 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacatatttcgaatataagacactaaatcaatattgattgtaaaacagcacagctttactttagaagtctgtaggatctcagccctagtaatacaaccatgaaacacaattcgatgaaaggagtttcacccccatggccgcagttctccatgtACCACCTTGCTTATGAGGCAA----AT-------TTGGAGAAGTGGA-TGCAT--CT-ACCTatcaaatgtcatacccagtcaa
gi|8 : atTATCAAAAGACTTTTA--GCGC-TA-TCTTATCTATAGAGCGGGA-CAATTTT--CAATAAGTTTTGGGGAAAATAACGTGT--TGGACATTTTCAAATAACAGTATA-TT-TCATGAGTCGCATCAAA--ATAGCATTT-ATCCAGCTATATACGAA-GTAAA---G-G-CGCATATATAT-Aatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacatatcaaaagacttttagcgctatcttatctatagagcgggacaattttcaataagttttggggaaaataacgtgttggacattttcaaataacagtatatttcatgagtcgcatcaaaatagcatttatccagctatatacgaagtaaaggcgcatatatata
gi|9 : ataccaccttgcttatgaggcaaatttggagaagtggatgcatctacctatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacaAGA-TACCTCTTC-A-GAGGCAA----ATATGCAAATCGGATAGGC-GA-TGCATCACT-ACCTTT-TGT---------ATTAT-TCTTTACACA-CTGA-C---GGC--AA-ATAAATCCT--CTGTATTTA--CG-A-TTAACAAAA---TGT-AT--CGC-TA-TTTC----------CAAAA-CAATT----CATTAAGTTTTGGG-GGGAAAATGTGT--T-GATATTTC---ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTGCCGCATGAAAAC-ACG-ATG-TAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTATACACATGTGCACTACTACTGGAATAGGAATAAGTAATTTT
Unaligned ( gi|16 ): TACAAAGTCTCTTTCATCGGAGTAAGATTTAAAAAAAA
Alignments
lowQualScore : 2222222222222 11111 4444444444 11 111 11 11 11 111 2222222222 2222 22 11111 11 2222 111 1111 22 111 44444444444444444444 22222222 1 1111 11 888888888888888888888888888 1 11111 11 111 7777777777777777 33333333333 111111111 555555555555555555555555 1 3333333 1 1 4444444 11 22222 3333333333333333333333333333333333 11 111111 222 555555555555 777777777777777777 11 11111 22222222 11 222222 1111 5555555555555 2 55555 111111 9999999999999999999999999999999 1
lowQualScore : 6 3333333333333 2 5 55555 6 8 3333333333 11 0 8 88 8 444 11 8 0 11 88 11 8 8 1 111 888 6 6 9999999999 6 0000 1 2 6 99 6 22 6 6 6 33333 8 88 11 9999 444 888 8 4444 7 6 00 7 777 8 77777777777777777777 5 33333333 0 5 0 1 5 4 55 2222 33 1 1 6 6 6 444444444444444444444444444 6 9 6 6 3 6 99 3 22222 6 3 2 99 2 6 1 6 99 9 99 99 6 99 6 6 5 6 6 55 99 111 4444444444444444 6 00000000000 777777777 000000000000000000000000 99 6 3 2 6 2222222 2 3 0 0 7 5555555 33 00000 8 5555555555555555555555555555555555 44 999999 1 22 99 8 5 000 999 8 1 222222222222 66 111111111111111111 0 8 11 99 8 6 8 8 8 8 8 8 5 22222 11 8 8 8 8 11 0 0 8 11111111 11 8 8 8 333333 7777 11 4444444444444 0 8 99 1 8 8 6 7 9 4 6 3 6 6 6 6 99 33333 999999 5555555555555555555555555555555 6 3 1 6 6 6 6 77 6 99 6 6 777
lowQualScore : . ............. . . ..... . . .......... .. . . .. . ... .. . . .. .. .. . . . ... ... . . .......... . .... . . . .. . .. . . . ..... . .. .. .... ... ... . .... . . .. . ... . .................... . ........ . . . . . . .. .... .. . . . . . ........................... . . . . . . .. . ..... . . . .. . . . . .. . .. .. . .. . . . . . .. .. ... ................ . ........... ......... ........................ .. . . . . ....... . . . . . ....... .. ..... . .................................. .. ...... . .. .. . . ... ... . . ............ .. .................. . . .. .. . . . . . . . . . ..... .. . . . . .. . . . ........ .. . . . ...... .... .. ............. . . .. . . . . . . . . . . . . . .. ..... ...... ............................... . . . . . . . .. . .. . . ...
lowQualScore : 7 1111111111111 5 7 22222 7 0 0000000000 66 8 0 66 0 000 00 0 8 00 88 00 0 0 7 777 333 7 7 2222222222 7 0000 0 5 7 22 7 33 7 7 7 00000 0 88 00 6666 000 666 0 2222 3 7 77 3 555 0 55555555555555555555 7 66666666 7 7 7 4 7 3 99 1111 66 0 0 7 7 7 555555555555555555555555555 7 3 7 7 3 7 22 2 55555 7 2 5 88 5 7 0 7 88 8 22 77 7 22 7 7 7 7 7 88 22 777 2222222222222222 7 88888888888 000000000 222222222222222222222222 22 7 3 5 7 5555555 5 2 0 0 3 0000000 88 00000 0 2222222222222222222222222222222222 44 000000 4 00 44 0 0 000 444 0 4 000000000000 44 888888888888888888 8 0 00 00 0 4 0 0 0 0 0 0 0 00000 66 0 0 0 0 66 8 8 2 88888888 00 0 0 0 000000 0000 66 4444444444444 8 0 00 4 0 0 7 3 8 2 7 7 7 7 7 7 22 88888 222222 6666666666666666666666666666666 7 2 7 7 7 7 7 77 7 22 7 7 555
consensus : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACA-C---GTGTCA-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAAT-AAT-TCC--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTT-A-C----TCAGA---AA-CTTGT----------CAAAGTTT-C--ATTT-AC-----------GCGG---------TTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATT-TACA---ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCG-GTTCAAATCCGT-GAAGC-GGC-GTGATT----------TTTTTTTTTTTTTTTTTA---A------TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGT-A-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-T-NAGTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-TTTAT-AAAA-AA-ATT-ATCATTC--AAGTT-----AAAAAATTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
Reference ( family-4496 ) : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC-AATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACA-C---GT-TCA-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAAT-AATNTCC--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTT-A-C----T-------AA-CTTGT----------CAAAGTTT-C--ATTT-AC-----------GCGG---------TTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATT-TACA---ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCG-GTTCAAATCCN--GAAGC-GGC-GTGA------------TTTTTTTTTTTTTTTTTA---A------TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGT-A-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-T-NAGTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAATTTTAT-AAAA-AA-ATT-ATCATTC--AAGTT--AAAAAAAAATTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
gi|1 : AA----AT-------TTG-AGAAG------GCATCACTTACCTTTCTG----------ATT-TTCTT-ACA-A-CTGA-CACATGCCAAATATAAATCCTATCTGTATT-ATACG-AATTAACAAAA---TTTTA-TGCGCATAATTGC----------CAAAAACAATTCTAACATAAA--TTTGGG-AAAATAAC--GTGTT-GACATTTTC-AAAAACA-TATT-TTATAATGAGACGCTTC--A--ATA-CAGTTAA--CAAAGCTATAC--ATATGAATACGTT-CGCATGAATACAACGAAT-GTAATATAAACCACGTCAGAAGGCTCATCAGCATGTATATCAAATAAAAAAAAATATAAATAAATAATATATA
gi|1 : ttgagacggctcgcaacacagccgatagacactgtattagagcattTTATATAAAGAAAATA-ATATCAT-A--TATA-TTGATATA-AAAACAGT---AT-ACAGTATTGAAT-T-AAA-CTCCA--GCT-------AGCAAGTCAGT-AG-GT-ATATAGAGCCCTCA-------A-----------AT-CAG-CGACAGT-TA-CAC-ATCTTCATACGAAGAA--TGGAT--TG-AG-AATTAGGATACTTCATGAAGTTCCCTG-AGCTTCTGATCTGTACATCTACAAATAAATATTCCAAATATAG---GCCT-ATA--TGAGTATATGGTAAGCT-AATAGAAGG-CACATGATTA-GTTTAATATG--TTATCTTGTCTTAA-C----TCAAGATAAA-C-TGC----------AAAAGATT-TAAATTT-AC------------C-G---------TTTTGTGTATTCA-AACATTCCGAC--TCAGGTATCA-------TA--TC-AATCAT-GCGCAATATTGAAACACCTTTATTATTGTTACTAAATT-TACATAGGAGATA-AAGATATG---TGCTATGTG-TG-CATAATCCTTAG-GCACATCA--ACTCGTATGAAAAGGTA-CCCGAGCTTCAATACG--GAAGT-AGCAGTAATTTTTTCTGTATTTTTTTTTTTTTTTTTTATTTATAAAATTTCTTATA-ATCTACTTATTCCCA-TGAGGATCATCCAACA-AATGCG-TATTATCATTGCAATGTCAGATT-ATTTCAG--A-AACTA-TGCACAT-ATACTTATTATAAA-ATA-TCAC-ATAATTGTTGTATAC--TAAAGGAGTATTTGAGTG-CAGA-A-C------TTTAGAAATATACGAGAGCA-TAA------TAGAC--TGTC-T-GA-----AATTTTTATC-ATAATAGCAA--ATAATGACAT-TTGAAATATTAG-AAAA-AATATTCATCATTCGAAAGTT------AAAAATTA------GACT-------------TTAAAGTCTTAGCATTATTGAAATAATTTATGT-AATG-ATAAATT-ATTGTTCATAATGATTTGATACGCTTGCTATAGCAACCAA-ATT-AAACAAGATA-GCAAAAGTAGTATTAcaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatataaagaaaataatatcatatatattgatataaaaacagtatacagtattgaattaaactccagctagcaagtcagtaggtatatagagccctcaaatcagcgacagttacacatcttcatacgaagaatggattgagaattaggatacttcatgaagttccctgagcttctgatctgtacatctacaaataaatattccaaatataggcctatatgagtatatggtaagctaatagaaggcacatgattagtttaatatgttatcttgtcttaactcaagataaactgcaaaagatttaaatttaccgttttgtgtattcaaacattccgactcaggtatcatatcaatcatgcgcaatattgaaacacctttattattgttactaaatttacataggagataaagatatgtgctatgtgtgcataatccttaggcacatcaactcgtatgaaaaggtacccgagcttcaatacggaagtagcagtaattttttctgtattttttttttttttttttatttataaaatttcttataatctacttattcccatgaggatcatccaacaaatgcgtattatcattgcaatgtcagattatttcagaaactatgcacatatacttattataaaatatcacataattgttgtatactaaaggagtatttgagtgcagaactttagaaatatacgagagcataatagactgtctgaaatttttatcataatagcaaataatgacatttgaaatattagaaaaaatattcatcattcgaaagttaaaaattagactttaaagtcttagcattattgaaataatttatgtaatgataaattattgttcataatgatttgatacgcttgctatagcaaccaaattaaacaagatagcaaaagtagtattagcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|10 : ttgagacggctcgcaacacagccgatagacactgtattagagcattaaatttgagaaggcatcacttacctttctgattttcttacaactgacacatgccaaatataaatcctatctgtattatacgaattaacaaaattttatgcgcataattgccaaaaacaattctaacataaatttgggaaaataacgtgttgacattttcaaaaacatattttataatgagacgcttcaatacagttaacaaagctatacatatgaatacgttcgcatgaatacaacgaatgtaatataaaccacgtcagaaggctcatcagcatgtatatcaaataaaaaaaaatataaataaataatatatacaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttAGACTAC-TTGCT-ATGAGGCAAGCGGAT-------TTGC-----T-GA-TGCATCACT-ACCTTT-TGCGGACTTTTGATTATTCTT-GCAC---TGA-C---TGC--AA-ATAAATCCT--CT--ATT-A--CG-A-TTATAAAAA---TTTTA-TCCGC-T--TATC----------CAAAA-CAATTT---CATCAAGTTTGGGG-AGA--AACGTGTGTT-GACATTTTC--ATAACA-TTTT-TT-TAATGAGTgcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|11 : tgagtcggctcgcgcagcgagtACA-------------T----------------TTGAAAT-AGTTATGAAAATGAATAATTGGATTGTTAAT-ATG-TTTGATGCG-TTTCTA-GGCAACGAATGTT-AA--AAGATA-TG-AAAGTAA-ATTACA
gi|12 : ttttagtcttATGT---TGAAAT-AAAAAAATTATATATATATA-----------------TA-TTGA-ATATAAGACA-C---GTGTCA-TATTGATTGTAAAA-CACCAT-GCT----TTTAG--tttttttttaaattcataaacatgtgcaccactactgggataggaatgagtcaatttgatgaggagaccataaatgtc
gi|13 : ggctagttgaaT-GCAA-GATGATGCCAT-TTGGAA-TTTATAAAAA-AA-ATT-ATCATTT--AAGTT-----AAAAAATTA------GACT-------------T----------------T
gi|14 : AGACTACCTTGCT-ATGAGGCAA----AT-------
gi|2 : gttattgagtcggctcgcgcagtgagtAGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-AAATGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACATCTGAGC---TGC--AA-ATAAATCCT--CTGTATT-A--C--A-TTATCAAGA---TTTTATTGCGC-TA-TTTC----------CAAAA-CAATTT---CATAAAGTTTTGGG-GGAATAAC--GTGTT-GACGTTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTG-CGCATGAATAC-ACG-ATGGTAATATAAACCACGTC--AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATATTATATATC-T-ATGTGTA-TTGA-ATATAAGACA-C---GT-T-A-TATTGATTGT-AAA-CTCCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT------------------AT-CGAACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AG-AATTAGGATACTGCATGAAAT---CT----------CTTCGTAC-TCTTCAAAT-AATGTCC--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-TTTGAA--G-CAC-TGATT--GTTTAAGATG--TT---TTA--------------------AA-CTTGT----------CAAAGTTT-C--ATTT-AC-----------GCGG---------TTTTGTTTA--CA-GAC-TTCCGACAGTCAGGTA-CA-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATT-TACA---ACAGTG-ATG-TATG---TG--GCGTG-TATCGTAATCGGTAGCG--CGTCA-GACTTGCATGATGAGGAT-CCC--GTTCAAAT-CA--GAAGG-AGC-GTAATT----------TTTTTTTTTTTTTTTTTA---A------TTCTTACA-ATTTATT--TCCCCA-TTTAGATCA-CCAACA-AATGGG-T-TT-CCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATT-------------------GTGTTT--GTG-CAGT-A-C------TTTGGAAATAT----GAGCATTAAC------------TGTC-T-TAGTCTGAATTTTGATC-AT-AT-GCAAAGAT-ATGCCAT-TTGGAATTTTAT----A-AT-ATT-ATCTTTC--AAGTT------AAAAATTA------GACT-------------T----------------TTGAAAT-A-TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCA-TTGCTA--GCAACCAATATT-AA--AAGATA-GC-AAAGT-A-ATTACA
gi|3 : GAAAT-AAAAAAATTATATATATATA--------------------TTGA-ATATAAGACA-C---GTGTCA-TATTGATTGT-AAAACAC-AT-GCT----TTTAG--AGTCAATGAATGT-AT-GAAGCGACTCATTAAAA-ATATGTGAGAGTAT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGATT--GGGAG-AATTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAAT-AATTTCC--AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCTTATTGA--GG-CAC--AATT--GTTTAAGATG--TT---TTGTTTT-A-C----TCAGAT--AA-CTTGT----------CAAAGTT--A--ATAA-AC-----------TTGG---------TT--GTTTA--CA-AAT-TTCCGA-AGTCAGGTA-TG-------TAGGTCAAATCAT-GC-CCA-ATT--------TTTGT--TTAT-----AATT-TACA----CGCTG-GTA-TATAC--TG--ACGTGGTGGCGTAATAGGTACCGT-CGTCA---------TGATGAGGGA-CCCG-GTTCAACTCCT--GAAAC-GGC-GGGG------------TTTTT----TT----------A------TTCTTATA-TTTTATT--TCCCCT-TTTAGATCA-ACAGCA-TATGGT-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-ATTGTA-AT-ATACGTATTATAGAT-TAGACACAATATTAGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGT-ATC------TTTGGAAATAT----GAGCATTAACTACTTTAAATAATGTCTT-AAGTTTGAATTTTGATC-AT-AT-GC-AAGATGATGCCAT-TTGGAA-TTTAT-AAAA-AA-ATT-ATCATTT--AAGTT----TAAAAAATTA------GATTTTAAGTCTTTGCAT----------------TTGAAAT-ATTTATGTAAATGAATGA-TT-ATTGTTC-T-ATG-TTTGATGCG-TTGCTA-GGCATCCAATATT-AA--ATGATA-GC-AAAAT-A-ATTACA
gi|4 : A-ATATA-GACA-G---CTATCA-TATTGATTGT-AAA-AAC-AT-GCC----TTTAG--AGTCAGTGAG-GTCAT-T-G----CCCCTCCCAA-A-----------AT-CAGACG-CATG-TAACAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAAATTAGGATA-TGCATGAAGTT-CCTGCAG-TTCTGCTTCGTAC-TCTTCAAAT-AAT-TCC--AATGTAGGT-GCCT-GAA--TGATGATATGGT-GGCT-ATTGAAAGGCCAC-TGATT--GTTTAAGA-G--TT---TTGTCTT-ATC----TCAGATAAAA-CTTGT----------TCAAGTTTCC--ATTTAAC-----------GCG-----------TTTGTTTA--CA-AAC-TTCCGACAGTCGTGTA-tatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|4 : AT-----AATT-TACA----CATCGCAGG-TATGAGATG--GGGTG--G-CGACATCGGTAGCGC-GGTCAAGACT-GTATGCAGAGGGT-CCCG-GTTCAAATCCCT-GAAGCTGGC-GTTA------------TTTTTTTTTT-------A---A------T-CTTATATATTTATT--TCCCCCATTTAGATCA-CCA-CA-AATGGGGT-TT-TCA-TGC-ATTTCAGATTGATTT--GCAAT-AC-A-TGCA-ATCATA-GTATTATAGATATAGTCACAA-ATTGGTTGT-T-CTTT-AAGGAGTATTT--GTGCCAGT-A-CCTTGATCTTGGAAATAT----GAGCAT----CAC---------TG-C-T-TAGTCTGAATTTGAATCAAT-AT-GC-AAGATAATGCCATCTTGGAA-TTTAT-AACA-AA-ATT-ATCATTC--AAGTTGAAAAAAAAAAT--------GACT-------------TTTCAAGTCTTGCAA--TTGAAAT-ATTTATGTAAATGAATAA-TT-ATTGTCAAT-ATG-TTTGATGCC-TTGCTA-GGCAACCAATATTAAA--AAGATATGC-AGAGTAA-ATTACAataatttacacatcgcaggtatgagatggggtggcgacatcggtagcgcggtcaagactgtatgcagagggtcccggttcaaatccctgaagctggcgttattttttttttaatcttatatatttatttcccccatttagatcaccacaaatggggttttcatgcatttcagattgatttgcaatacatgcaatcatagtattatagatatagtcacaaattggttgttctttaaggagtatttgtgccagtaccttgatcttggaaatatgagcatcactgcttagtctgaatttgaatcaatatgcaagataatgccatcttggaatttataacaaaattatcattcaagttgaaaaaaaaaatgacttttcaagtcttgcaattgaaatatttatgtaaatgaataattattgtcaatatgtttgatgccttgctaggcaaccaatattaaaaagatatgcagagtaaattacattttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|5 : aatatagacagctatcatattgattgtaaaaacatgcctttagagtcagtgaggtcattgcccctcccaaaatcagacgcatgtaacacattcgtacgaaggagatggttggagaaattaggatatgcatgaagttcctgcagttctgcttcgtactcttcaaataattccaatgtaggtgcctgaatgatgatatggtggctattgaaaggccactgattgtttaagagttttgtcttatctcagataaaacttgttcaagtttccatttaacgcgtttgtttacaaacttccgacagtcgtgtaAGACTACCTTGCT--TGAGCCAA-------------TTGGAGA-GT--A-TGCATCACT-AC-TTT-TG----------AT-AT-CTT-ACAC---TGA-C---TGC--AA-ATA--TCCT--CTGTAT--A--CGGA-TTATCAA-------TTA-TGCGC-TA-TTTC----------CAAA--CAATTT---CATAA--TTTTTGG-AAAATA-C--GTGTT-GACATTTTC-T-TAACA-TATTATT-TA----GGCGCTTC--ACAATA-CATT--A--CAGATTTAACC--A-ATAAA---GGG-CGCATGAATAC-ACG--T-GTAATATAA-CCA-GTCA-A-GCCTCATCAGCATGT---TGAAAT-AAAAAAAAAAGATATATAAAATATA-ATC-TTA--TATACTTGA-ATATAAGACA-C---GTATCA-T---GATTTA-AAA-CACCAT-GCT----TTTAG--AGTCA-TGAG-GT-AT-TAG----CTC-T---CA-T-----------AT-CA-ACG-CATG-TAACAC-AT--TCGTACGA-GGAG-TGGTTTGGG-AG-A-TTAG-ATACTGCATGAAGTTCC-TGCAT-TCTTGCTTCGTAC-TCTTCAAAT--ATTTCC--AATGTAGG-CGCCT-AAATTTGATTATATGGT-GGCT-TCTTGAAGG-CAC-TGATT--GTTTAAGATG---T---TTGTCTT-G-CCAGAT-------AA-CTTG-----------CAAAGTTT-C----TT-AC-----------GCGG---------TTTTGTTTA--CAGAACTTTCTGACAGTCAGGTA-ttttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|6 : gagtcggctcgcgcacgagtTTTGT--TTAT-----AATTACATA---AC--TG-AAG-T-------G--GTG----G-CGTAATAGGTAGCGT-TGTCA-GGTTCACATGCAGACGGTGTCCG-GTTCAAATCCGTTGCA-C-GG--ATGA------------TTTTTT-TTTT----------A------TTATTAGA-ATTTATT--TCCCCT-TTTAGATCA-CCAGTATAATGGT-T-TT-TCA-TGC-CTTTCAGATTTATTT--G--ATAAC-A-TGTT-TT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTT-CAGTAA-C------TATGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TAAAGTTTGAATTCTGATC-AT-AT-A-AAGGGTAATACAAT-TTGGAA-TTTAT-AAAATAG-A---ATCATTA--AAGTTA-AAAAAAAAATTAAGTCTTGAC--------------T----------------TTGAGAT-ATTTATGTAAATGAATAATGT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-GA--AATATA-GC-AAAGTAA-ATTACAtaattacgcatcgattgtacgag
gi|7 : t-A--TATT-TCGA-ATATAAGACA-CTAAAT-CAA-TATTGATTGTAAAA-CAGCACAGCTTTACTTTAGA-AGTCTGTAGG-AT-CT-CAG----CCC-T---AGTA-----------ATACA-AC--CATGAAA-CACAAT--TCG-ATGAAAG-GA--GTT----------TCA----CCCCCATGG------CCGCAG-TTCTCCAT-GT-----TTCAA--------------TGTAGGGCGCCTAAAA--TGACGATCTAGT-GGCT-ATTGAAGGC-TAA-TGGTTGGGTTTAAGATGATTT---TTTTCTT-A-C----T-------CATCTTTTCTTACTCAGACAAAGTCT-G--AATA-ACCTGTCAAACGTGCGGTTAGCTTTTTTTTGTTTA--CA-AAC-TTCCGGAAGTCAGGTA-CGCGTATGCTAGGTCAAATCATAGC-CCAtatattctttttcttttacacacatgtgcactactactggaataggaatgagtaaattttaagagggagccataaatgtct
gi|8 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacACCACCTTGCTTATGAGGCAA----AT-------TTGGAGAAGTGGA-TGCAT--CT-ACCTatcaaatgtcatacccagtcaa
gi|8 : atTATCAAAAGACTTTTA--GCGC-TA-TCTTATCTATAGAGCGGGA-CAATTTT--CAATAAGTTTTGGGGAAAATAAC--GTGTTGGACATTTTCAAATAACAGTATA-TT-TCATGAGTCGCATCAAA--ATAGCATTT-ATCCAGCTATATACGAA-GTAAA---G-G-CGCATATATAT-Aatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacatatcaaaagacttttagcgctatcttatctatagagcgggacaattttcaataagttttggggaaaataacgtgttggacattttcaaataacagtatatttcatgagtcgcatcaaaatagcatttatccagctatatacgaagtaaaggcgcatatatata
gi|9 : ataccaccttgcttatgaggcaaatttggagaagtggatgcatctacctatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacaAGA-TACCTCTTC-A-GAGGCAA----ATATGCAAATCGGATAGGC-GA-TGCATCACT-ACCTTT-TGT---------ATTATTCTTTACACA-CTGA-C---GGC--AA-ATAAATCCT--CTGTATTTA--CG-A-TTAACAAAA---TGT-A-T-CGC-TA-TTTC----------CAAAA-CAATT----CATTAAGTTTTGGG-GGGAAAAT--GTGTT-GATATTTC---ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTGCCGCATGAAAAC-ACG-AT-GTAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTATACACATGTGCACTACTACTGGAATAGGAATAAGTAATTTT
Unaligned ( gi|16 ): TACAAAGTCTCTTTCATCGGAGTAAGATTTAAAAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 2222222222222 11111 4444444444 11 111 11 11 11 111 2222222222 2222 11 11111 11 2222 111 1111 22 111 44444444444444444444 11111 1 1111 11 888888888888888888888888888 1 11111 1111111 11 11 111 1 888888888888888888888888888888888 111111 1111 1 3333333 1 11 4444444 22222 11 44444444444444444444444444444444444 11 111111 11 22 00000000000000000000000000000000000 11 11111 22222222 11 22222222 1111 5555555555555 1 222222 1111 111111 999999999999999999999999999999 1
lowQualScore : 6 3333333333333 2 5 55555 6 8 3333333333 11 0 8 88 8 444 11 8 0 11 88 11 8 8 1 111 888 6 6 9999999999 6 0000 1 2 6 99 6 55 6 6 6 33333 8 88 11 9999 444 888 8 4444 7 6 00 7 777 8 77777777777777777777 5 00000 5 5 5 0 1 5 4 55 2222 33 1 1 6 6 6 444444444444444444444444444 6 9 6 6 3 6 99 3 22222 99 2 3 6 2 6 1 6 5555555 6 33 6 99 6 6 5 6 6 55 99 111 2 3 3 888888888888888888888888888888888 1 777777 6 2 4444 99 6 3 2 6 2222222 2 3 0 77 5555555 55555 11 8 00000000000000000000000000000000000 44 999999 1 22 99 11 5 00 8 8 1 11111111111111111111111111111111111 0 8 11 99 8 6 8 8 8 8 8 8 5 22222 11 8 8 8 8 11 0 0 8 11111111 11 8 99999999 7777 11 4444444444444 0 8 1 8 1 8 8 6 7 9 4 6 6 6 3 6 6 99 6 444444 4444 999999 333333333333333333333333333333 6 3 1 6 6 6 6 77 6 99 6 6 777
lowQualScore : . ............. . . ..... . . .......... .. . . .. . ... .. . . .. .. .. . . . ... ... . . .......... . .... . . . .. . .. . . . ..... . .. .. .... ... ... . .... . . .. . ... . .................... . ..... . . . . . . . .. .... .. . . . . . ........................... . . . . . . .. . ..... .. . . . . . . . ....... . .. . .. . . . . . .. .. ... . . . ................................. . ...... . . .... .. . . . . ....... . . . .. ....... ..... .. . ................................... .. ...... . .. .. .. . .. . . . ................................... . . .. .. . . . . . . . . . ..... .. . . . . .. . . . ........ .. . ........ .... .. ............. . . . . . . . . . . . . . . . . . .. . ...... .... ...... .............................. . . . . . . . .. . .. . . ...
lowQualScore : 7 1111111111111 5 7 22222 7 0 0000000000 66 8 0 66 0 000 00 0 8 00 88 00 0 0 7 777 333 7 7 2222222222 7 0000 0 5 7 22 7 88 7 7 7 00000 0 88 00 6666 000 666 0 2222 3 7 77 3 555 0 55555555555555555555 7 99999 7 7 7 7 4 7 3 99 1111 66 0 0 7 7 7 555555555555555555555555555 7 3 7 7 3 7 22 2 55555 88 5 2 7 5 7 0 7 0000000 7 88 7 22 7 7 7 7 7 88 22 777 5 3 2 888888888888888888888888888888888 7 555555 7 5 2222 22 7 3 5 7 5555555 5 2 0 33 0000000 00000 00 0 22222222222222222222222222222222222 44 000000 4 00 44 00 6 66 0 0 4 66666666666666666666666666666666666 8 0 00 00 0 4 0 0 0 0 0 0 0 00000 66 0 0 0 0 66 8 8 2 88888888 00 0 00000000 0000 66 4444444444444 8 0 0 0 4 0 0 7 3 8 2 7 7 7 3 7 7 22 7 000000 2222 222222 999999999999999999999999999999 7 2 7 7 7 7 7 77 7 22 7 7 555
consensus : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTTA-CTCA------------------------G---A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCGG--TTCAAATCCGTGAAGC-GGC-GTGATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
Reference ( family-4496 ) : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTTA-CTCA------------------------G---A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCGG--TTCAAATCCGTGAAGC-GGC-GTGATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
gi|1 : AA----AT-------TTG-AGAAG------GCATCACTTACCTTTCTG----------ATT-TTCTT-ACA-A-CTGA-CACATGCCAAATATAAATCCTATCTGTATT-ATACG-AATTAACAAAA---TTTTA-TGCGCATAATTGC----------CAAAAACAATTCTAACATAAA--TTTGGG-AAAATAAC--GTGTT-GACATTTTCA-AAAACA-TATT-TTATAATGAGACGCTTC--A--ATA-CAGTTAA--CAAAGCTATAC--ATATGAATACGTT-CGCATGAATACAACGAAT-GTAATATAAACCACGTCAGAAGGCTCATCAGCATGTATATCAAATAAAAAAAAATATAAATAAATAATATATA
gi|1 : ttgagacggctcgcaacacagccgatagacactgtattagagcattTTATATAAAGAAAATA-ATATCAT-A--TATA-TTGATATA-AAAACA-GT--ATAC-AGTATTGAAT-T-AAA-CTCCA--GCT-------AGCAAGTCAGT-AG-GT-ATATAGAGCCCTCA-------A-----------AT-CAG-CGACAGT-TA-CAC-ATCTTCATACGAAGAA--TGGAT--TG-AGAA-TTAGGATACTTCATGAAGTTCCCTG-AGCTTCTGATCTGTACATCTACAAATAAATAT-T-CCAAATATAGG---CCT-ATA--TGAGTATATGGTAAGCT-AATAGAAGG-CACATGATTA-GTTTAATATG--TTATCTTGTCTTAACTCA------------------------AGATA-A--ACT-GCAAAAGATT-TAAATTT-AC-C--G-TTTTGTGTATTCA-AACATTCCGAC--TCAGGTATCA-------TA--TCAA-TCAT-GCGCAATATTGAAACACCTTTATTATTGTTACTAAATT-TACATAGGA-GATA-AAGATATG---TGCTATGTG-TG-CATAATCCTTAG-GCACATCA--ACTCGTATGAAAAGGTA-CCCGAGCTTCAA-TACG-GAAGT-AGCAGTAATTTTTTCTGTATTTTTTTTTTTTTTTTTTATTTATAAAATTTCTTATA-ATCTACTTATTCCCA-TGAGGATCATCCAACA-AATGCG-TATTATCATTGCAATGTCAGATT-ATTTCAG--A-AACTA-TGCACAT-ATACTTATTATAAA-ATA-TCAC-ATAATTGTTGTATAC--TAAAGGAGTATTTGAGTG-CAGAA-C------TTTAGAAATATACGAGAGCA-TAA------TAGAC--TGTC-TGA------AATTTTTATC-ATAATAGCAA--ATAATGACAT-TTGAAA-TATTAGAAAA-AATATTCATCATTCGAAAG-TT------AAAAA----TTA------GACT-------------TTAAAGTCTTAGCATTATTGAAATAATTTATGT-AATG-ATAAATT-ATTGTTCATAATGATTTGATACGCTTGCTATAGCAACCAA-ATT-AAACAAGATA-GCAAAAGTAGTATTAcaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatataaagaaaataatatcatatatattgatataaaaacagtatacagtattgaattaaactccagctagcaagtcagtaggtatatagagccctcaaatcagcgacagttacacatcttcatacgaagaatggattgagaattaggatacttcatgaagttccctgagcttctgatctgtacatctacaaataaatattccaaatataggcctatatgagtatatggtaagctaatagaaggcacatgattagtttaatatgttatcttgtcttaactcaagataaactgcaaaagatttaaatttaccgttttgtgtattcaaacattccgactcaggtatcatatcaatcatgcgcaatattgaaacacctttattattgttactaaatttacataggagataaagatatgtgctatgtgtgcataatccttaggcacatcaactcgtatgaaaaggtacccgagcttcaatacggaagtagcagtaattttttctgtattttttttttttttttttatttataaaatttcttataatctacttattcccatgaggatcatccaacaaatgcgtattatcattgcaatgtcagattatttcagaaactatgcacatatacttattataaaatatcacataattgttgtatactaaaggagtatttgagtgcagaactttagaaatatacgagagcataatagactgtctgaaatttttatcataatagcaaataatgacatttgaaatattagaaaaaatattcatcattcgaaagttaaaaattagactttaaagtcttagcattattgaaataatttatgtaatgataaattattgttcataatgatttgatacgcttgctatagcaaccaaattaaacaagatagcaaaagtagtattagcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|10 : ttgagacggctcgcaacacagccgatagacactgtattagagcattaaatttgagaaggcatcacttacctttctgattttcttacaactgacacatgccaaatataaatcctatctgtattatacgaattaacaaaattttatgcgcataattgccaaaaacaattctaacataaatttgggaaaataacgtgttgacattttcaaaaacatattttataatgagacgcttcaatacagttaacaaagctatacatatgaatacgttcgcatgaatacaacgaatgtaatataaaccacgtcagaaggctcatcagcatgtatatcaaataaaaaaaaatataaataaataatatatacaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttAGACTAC-TTGCT-ATGAGGCAAGCGGAT-------TTGC-----T-GA-TGCATCACT-ACCTTT-TGCGGACTTTTGATTATTCTT-GCAC---TGA-C---TGC--AA-ATAAATCCT--CT--ATT-A--CG-A-TTATAAAAA---TTTTA-TCCGC-T--TATC----------CAAAA-CAATTT---CATCAAGTTTGGGG-AGA--AACGTGTGTT-GACATTTTC--ATAACA-TTTT-TT-TAATGAGTgcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|11 : tgagtcggctcgcgcagcgagtACA-------------T----------------TTGAAAT-AGTTATGAAAATGAATAATTGGATTGTTAAT-ATG-TTTGATGCG-TTTCTA-GGCAACGAATGTT-AA--AAGATA-TG-AAAGTAA-ATTACA
gi|12 : ttttagtcttATGT---TGAAAT-AAAAAAATTATATATATATA-----------------TA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGTAAAA-CACCAT-GCT----TTTAG--tttttttttaaattcataaacatgtgcaccactactgggataggaatgagtcaatttgatgaggagaccataaatgtc
gi|13 : ggctagttgaaT-GCAA-GATGATGCCAT-TTGGAA-T-TTATAAAAAAA-ATT-ATCATTT--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------T
gi|14 : AGACTACCTTGCT-ATGAGGCAA----AT-------
gi|2 : gttattgagtcggctcgcgcagtgagtAGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-AAATGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACATCTGAGC---TGC--AA-ATAAATCCT--CTGTATT-A--C--A-TTATCAAGA---TTTTATTGCGC-TA-TTTC----------CAAAA-CAATTT---CATAAAGTTTTGGG-GGAATAAC--GTGTT-GACGTTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTG-CGCATGAATAC-ACG-ATGGTAATATAAACCACGTC--AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATATTATATATC-T-ATGTGTA-TTGA-ATATAAGACAC----GT-T-A-TATTGATTGT-AAA-CTCCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT------------------AT-CGAACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAAT---CT----------CTTCGTAC-TCTTCAAATAA---TGT-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-TTTGAA--G-CAC-TGATT--GTTTAAGATG--TT---TT---------------------------------------A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-GAC-TTCCGACAGTCAGGTA-CA-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACAGTG-ATG-TATG---TG--GCGTG-TATCGTAATCGGTAGCG--CGTCA-GACTTGCATGATGAGGAT-CCC-G--TTCAAATCA--GAAGG-AGC-GTAATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTACA-ATTTATT--TCCCCA-TTTAGATCA-CCAACA-AATGGG-T-TT-CCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATT-------------------GTGTTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAAC------------TGTC-TTA-GTCTGAATTTTGATC-AT-AT-GCAAAGAT-ATGCCAT-TTGGAATT-TTAT---A-AT-ATT-ATCTTTC--AAG-TT------AAAAA----TTA------GACT-------------T----------------TTGAAAT-A-TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCA-TTGCTA--GCAACCAATATT-AA--AAGATA-GC-AAAGT-A-ATTACA
gi|3 : GAAAT-AAAAAAATTATATATATATA--------------------TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAAACAC-AT-GCT----TTTAG--AGTCAATGAATGT-AT-GAAGCGACTCATTAAAA-ATATGTGAGAGTAT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGATT--GGGAGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-TTCCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCTTATTGA--GG-CAC--AATT--GTTTAAGATG--TT---TTGTTTTA-CTCA------------------------G---ATA--ACTTGTCAAAGTT--AA--TAA-ACTT--GGTT--GTTTA--CA-AAT-TTCCGA-AGTCAGGTA-TG-------TAGGTCAAATCAT-GCCCA--ATT--------TTTGTT-----TAT--AATT-TACA-----CGCTG-GTA-TATAC--TG--ACGTGGTGGCGTAATAGGTACCGT-CGTCA---------TGATGAGGGA-CCCGG--TTCAACTCC-TGAAAC-GGC-GGGGTTTTT---------------TT--------------A---TTCTTATA-TTTTATT--TCCCCT-TTTAGATCA-ACAGCA-TATGGT-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-ATTGTA-AT-ATACGTATTATAGAT-TAGACACAATATTAGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTATC------TTTGGAAATAT----GAGCATTAACTACTTTAAATAATGTCTTAA-GTTTGAATTTTGATC-AT-AT-GC-AAGATGATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTT--AAGTTT-----AAAAAA----TTA------GATTTTAAGTCTTTGCAT----------------TTGAAAT-ATTTATGTAAATGAATGA-TT-ATTGTTC-T-ATG-TTTGATGCG-TTGCTA-GGCATCCAATATT-AA--ATGATA-GC-AAAAT-A-ATTACA
gi|4 : A-ATATA-GACAGCT--AT-C-A-TATTGATTGT-AAA-AAC-AT-GCC----TTTAG--AGTCAGTGAG-GTCAT-T-G----CCCCTCCCAA-A-----------AT-CAGACG-CATG-TAACAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAAATTAGGATA-TGCATGAAGTTCC-TGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGT-GCCT-GAA--TGATGATATGGTG-GCT-ATTGAAAGGCCAC-TGATT--GTTTAAGA-G--TT---TTGTCTTATCTCA------------------------GATAA-A--ACTTGTTCAAGTTTCCA--TTTAACGC--G--TTTGTTTA--CA-AAC-TTCCGACAGTCGTGTA-tatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|4 : AT--AATT-TACA-----CATCGCAGG-TATGAGATG--GGGTG--G-CGACATCGGTAGCGC-GGTCAAGACT-GTATGCAGAGGGT-CCCGG--TTCAAATCCCTGAAGCTGGC-GTTATTTTTT---------TTTT----------------AA---T-CTTATATATTTATT--TCCCCCATTTAGATCA-CCA-CA-AATGGGGT-TT-TCA-TGC-ATTTCAGATTGATTT--GCAAT-AC-A-TGCA-ATCATA-GTATTATAGATATAGTCACAA-ATTGGTTGT-T-CTTT-AAGGAGTATTT--GTGCCAGTA-CCTTGATCTTGGAAATAT----GAGCAT----CAC---------TG-C-TTA-GTCTGAATTTGAATCAAT-AT-GC-AAGATAATGCCATCTTGGAA-T-TTATAACA-AA-ATT-ATCATTC--AAG-TTGAAAAAAAAAA----T--------GACT-------------TTTCAAGTCTTGCAA--TTGAAAT-ATTTATGTAAATGAATAA-TT-ATTGTCAAT-ATG-TTTGATGCC-TTGCTA-GGCAACCAATATTAAA--AAGATATGC-AGAGTAA-ATTACAataatttacacatcgcaggtatgagatggggtggcgacatcggtagcgcggtcaagactgtatgcagagggtcccggttcaaatccctgaagctggcgttattttttttttaatcttatatatttatttcccccatttagatcaccacaaatggggttttcatgcatttcagattgatttgcaatacatgcaatcatagtattatagatatagtcacaaattggttgttctttaaggagtatttgtgccagtaccttgatcttggaaatatgagcatcactgcttagtctgaatttgaatcaatatgcaagataatgccatcttggaatttataacaaaattatcattcaagttgaaaaaaaaaatgacttttcaagtcttgcaattgaaatatttatgtaaatgaataattattgtcaatatgtttgatgccttgctaggcaaccaatattaaaaagatatgcagagtaaattacattttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|5 : aatatagacagctatcatattgattgtaaaaacatgcctttagagtcagtgaggtcattgcccctcccaaaatcagacgcatgtaacacattcgtacgaaggagatggttggagaaattaggatatgcatgaagttcctgcagttctgcttcgtactcttcaaataattccaatgtaggtgcctgaatgatgatatggtggctattgaaaggccactgattgtttaagagttttgtcttatctcagataaaacttgttcaagtttccatttaacgcgtttgtttacaaacttccgacagtcgtgtaAGACTACCTTGCT--TGAGCCAA-------------TTGGAGA-GT--A-TGCATCACT-AC-TTT-TG----------AT-AT-CTT-ACAC---TGA-C---TGC--AA-ATA--TCCT--CTGTAT--A--CGGA-TTATCAA-------TTA-TGCGC-TA-TTTC----------CAAA--CAATTT---CATAA--TTTTTGG-AAAATA-C--GTGTT-GACATTTTC--TTAACA-TATTATT-TA----GGCGCTTC--ACAATA-CATT--A--CAGATTTAACC--A-ATAAA---GGG-CGCATGAATAC-ACG--T-GTAATATAA-CCA-GTCA-A-GCCTCATCAGCATGT---TGAAAT-AAAAAAAAAAGATATATAAAATATA-ATC-TTA--TATACTTGA-ATATAAGACACGT--AT-C-A-T---GATTTA-AAA-CACCAT-GCT----TTTAG--AGTCA-TGAG-GT-AT-TAG----CTC-T---CA-T-----------AT-CA-ACG-CATG-TAACAC-AT--TCGTACGA-GGAG-TGGTTTGGG-AGA--TTAG-ATACTGCATGAAGTTCC-TGCAT-TCTTGCTTCGTAC-TCTTCAAATAT---T-T-CCAA-TGTAGG-CGCCT-AAATTTGATTATATGGTG-GCT-TCTTGAAGG-CAC-TGATT--GTTTAAGATG---T---TTGTCTTG-C-CA------------------------G---ATA--ACTTG-CAAAGTTT-C----TT-ACGC--GGTTTTGTTTA--CAGAACTTTCTGACAGTCAGGTA-ttttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|6 : gagtcggctcgcgcacgagtTTTGTT-----TAT--AATTACATA----AC--TG-AAG-T-------G--GTG----G-CGTAATAGGTAGCGT-TGTCA-GGTTCACATGCAGACGGTGTCCGG--TTCAAATCCGTTGCAC-GG--ATGATTTTTT---------TTTT-----------------A---TTATTAGA-ATTTATT--TCCCCT-TTTAGATCA-CCAGTATAATGGT-T-TT-TCA-TGC-CTTTCAGATTTATTT--G--ATAAC-A-TGTT-TT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTT-CAGTAAC------TATGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TAAAGTTTGAATTCTGATC-AT-AT-A-AAGGGTAATACAAT-TTGGAA-T-TTATAAAATAG-A---ATCATTA--AAG-TT-----AAAAAAAAAATTAAGTCTTGACT-------------T----------------T-GAGAT-ATTTATGTAAATGAATAATGT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-GA--AATATA-GC-AAAGTAA-ATTACAtaattacgcatcgattgtacgag
gi|7 : t-A--TATT-TCGA-ATATAAGACAC-TAAAT-CAA-TATTGATTGTAAAA-CAGCACAGCTTTACTTTAGA-AGTCTGTAGG-AT-CT-CAG----CCC-T---AGTA-----------ATACA-AC--CATGAAA-CACAAT--TCG-ATGAAAG-GA--GTT----------TCA----CCCCCATGG------CCGCAG-TTCTCCAT-GT-----TTCAA----------------TGTAGGGCGCCTAAAA--TGACGATCTAGTG-GCT-ATTGAAGGC-TAA-TGGTTGGGTTTAAGATGATTT---TTTTCTTA-CTCATCTTTTCTTACTCAGACAAAGTCTG---A-ATAACCTGTCAAACGTG-CG--GTT-A-GCTTTTTTTTGTTTA--CA-AAC-TTCCGGAAGTCAGGTA-CGCGTATGCTAGGTCAAATCATAGCCCA-tatattctttttcttttacacacatgtgcactactactggaataggaatgagtaaattttaagagggagccataaatgtct
gi|8 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacACCACCTTGCTTATGAGGCAA----AT-------TTGGAGAAGTGGA-TGCAT--CT-ACCTatcaaatgtcatacccagtcaa
gi|8 : atTATCAAAAGACTTTTA--GCGC-TA-TCTTATCTATAGAGCGGGA-CAATTTT--CAATAAGTTTTGGGGAAAATAAC--GTGTTGGACATTTTCAAATAACAGTATA-TT-TCATGAGTCGCATCAAA--ATAGCATTT-ATCCAGCTATATACGAA-GTAAA---G-G-CGCATATATAT-Aatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacatatcaaaagacttttagcgctatcttatctatagagcgggacaattttcaataagttttggggaaaataacgtgttggacattttcaaataacagtatatttcatgagtcgcatcaaaatagcatttatccagctatatacgaagtaaaggcgcatatatata
gi|9 : ataccaccttgcttatgaggcaaatttggagaagtggatgcatctacctatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacaAGA-TACCTCTTC-A-GAGGCAA----ATATGCAAATCGGATAGGC-GA-TGCATCACT-ACCTTT-TGT---------ATTATTCTTTACACA-CTGA-C---GGC--AA-ATAAATCCT--CTGTATTTA--CG-A-TTAACAAAA---TGT-A-T-CGC-TA-TTTC----------CAAAA-CAATT----CATTAAGTTTTGGG-GGGAAAAT--GTGTT-GATATTT-C--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTGCCGCATGAAAAC-ACG-AT-GTAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTATACACATGTGCACTACTACTGGAATAGGAATAAGTAATTTT
Unaligned ( gi|16 ): TACAAAGTCTCTTTCATCGGAGTAAGATTTAAAAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 2222222222222 11111 4444444444 11 111 11 11 11 111 2222222222 2222 11 11111 11 2222 111 1111 22 111 44444444444444444444 11111 1 1111 11 888888888888888888888888888 1 11111 1111111 11 11 111 1 888888888888888888888888888888888 111111 1111 1 3333333 1 11 4444444 22222 11 44444444444444444444444444444444444 11 111111 11 22 00000000000000000000000000000000000 11 11111 22222222 11 22222222 1111 5555555555555 1 222222 1111 111111 999999999999999999999999999999 1
lowQualScore : 6 3333333333333 2 5 55555 6 8 3333333333 11 0 8 88 8 444 11 8 0 11 88 11 8 8 1 111 888 6 6 9999999999 6 0000 1 2 6 99 6 55 6 6 6 33333 8 88 11 9999 444 888 8 4444 7 6 00 7 777 8 77777777777777777777 5 00000 5 5 5 0 1 5 4 55 2222 33 1 1 6 6 6 444444444444444444444444444 6 9 6 6 3 6 99 3 22222 99 2 3 6 2 6 1 6 5555555 6 33 6 99 6 6 5 6 6 55 99 111 2 3 3 888888888888888888888888888888888 1 777777 6 2 4444 99 6 3 2 6 2222222 2 3 0 77 5555555 55555 11 8 00000000000000000000000000000000000 44 999999 1 22 99 11 5 00 8 8 1 11111111111111111111111111111111111 0 8 11 99 8 6 8 8 8 8 8 8 5 22222 11 8 8 8 8 11 0 0 8 11111111 11 8 99999999 7777 11 4444444444444 0 8 1 8 1 8 8 6 7 9 4 6 6 6 3 6 6 99 6 444444 4444 999999 333333333333333333333333333333 6 3 1 6 6 6 6 77 6 99 6 6 777
lowQualScore : . ............. . . ..... . . .......... .. . . .. . ... .. . . .. .. .. . . . ... ... . . .......... . .... . . . .. . .. . . . ..... . .. .. .... ... ... . .... . . .. . ... . .................... . ..... . . . . . . . .. .... .. . . . . . ........................... . . . . . . .. . ..... .. . . . . . . . ....... . .. . .. . . . . . .. .. ... . . . ................................. . ...... . . .... .. . . . . ....... . . . .. ....... ..... .. . ................................... .. ...... . .. .. .. . .. . . . ................................... . . .. .. . . . . . . . . . ..... .. . . . . .. . . . ........ .. . ........ .... .. ............. . . . . . . . . . . . . . . . . . .. . ...... .... ...... .............................. . . . . . . . .. . .. . . ...
lowQualScore : 7 1111111111111 5 7 22222 7 0 0000000000 66 8 0 66 0 000 00 0 8 00 88 00 0 0 7 777 333 7 7 2222222222 7 0000 0 5 7 22 7 88 7 7 7 00000 0 88 00 6666 000 666 0 2222 3 7 77 3 555 0 55555555555555555555 7 99999 7 7 7 7 4 7 3 99 1111 66 0 0 7 7 7 555555555555555555555555555 7 3 7 7 3 7 22 2 55555 88 5 2 7 5 7 0 7 0000000 7 88 7 22 7 7 7 7 7 88 22 777 5 3 2 888888888888888888888888888888888 7 555555 7 5 2222 22 7 3 5 7 5555555 5 2 0 33 0000000 00000 00 0 22222222222222222222222222222222222 44 000000 4 00 44 00 6 66 0 0 4 66666666666666666666666666666666666 8 0 00 00 0 4 0 0 0 0 0 0 0 00000 66 0 0 0 0 66 8 8 2 88888888 00 0 00000000 0000 66 4444444444444 8 0 0 0 4 0 0 7 3 8 2 7 7 7 3 7 7 22 7 000000 2222 222222 999999999999999999999999999999 7 2 7 7 7 7 7 77 7 22 7 7 555
consensus : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTTA-CTCA------------------------G---A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCGG--TTCAAATCCGTGAAGC-GGC-GTGATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
Reference ( family-4496 ) : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTTA-CTCA------------------------G---A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCGG--TTCAAATCCGTGAAGC-GGC-GTGATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
gi|1 : AA----AT-------TTG-AGAAG------GCATCACTTACCTTTCTG----------ATT-TTCTT-ACA-A-CTGA-CACATGCCAAATATAAATCCTATCTGTATT-ATACG-AATTAACAAAA---TTTTA-TGCGCATAATTGC----------CAAAAACAATTCTAACATAAA--TTTGGG-AAAATAAC--GTGTT-GACATTTTCA-AAAACA-TATT-TTATAATGAGACGCTTC--A--ATA-CAGTTAA--CAAAGCTATAC--ATATGAATACGTT-CGCATGAATACAACGAAT-GTAATATAAACCACGTCAGAAGGCTCATCAGCATGTATATCAAATAAAAAAAAATATAAATAAATAATATATA
gi|1 : ttgagacggctcgcaacacagccgatagacactgtattagagcattTTATATAAAGAAAATA-ATATCAT-A--TATA-TTGATATA-AAAACA-GT--ATAC-AGTATTGAAT-T-AAA-CTCCA--GCT-------AGCAAGTCAGT-AG-GT-ATATAGAGCCCTCA-------A-----------AT-CAG-CGACAGT-TA-CAC-ATCTTCATACGAAGAA--TGGAT--TG-AGAA-TTAGGATACTTCATGAAGTTCCCTG-AGCTTCTGATCTGTACATCTACAAATAAATAT-T-CCAAATATAGG---CCT-ATA--TGAGTATATGGTAAGCT-AATAGAAGG-CACATGATTA-GTTTAATATG--TTATCTTGTCTTAACTCA------------------------AGATA-A--ACT-GCAAAAGATT-TAAATTT-AC-C--G-TTTTGTGTATTCA-AACATTCCGAC--TCAGGTATCA-------TA--TCAA-TCAT-GCGCAATATTGAAACACCTTTATTATTGTTACTAAATT-TACATAGGA-GATA-AAGATATG---TGCTATGTG-TG-CATAATCCTTAG-GCACATCA--ACTCGTATGAAAAGGTA-CCCGAGCTTCAA-TACG-GAAGT-AGCAGTAATTTTTTCTGTATTTTTTTTTTTTTTTTTTATTTATAAAATTTCTTATA-ATCTACTTATTCCCA-TGAGGATCATCCAACA-AATGCG-TATTATCATTGCAATGTCAGATT-ATTTCAG--A-AACTA-TGCACAT-ATACTTATTATAAA-ATA-TCAC-ATAATTGTTGTATAC--TAAAGGAGTATTTGAGTG-CAGAA-C------TTTAGAAATATACGAGAGCA-TAA------TAGAC--TGTC-TGA------AATTTTTATC-ATAATAGCAA--ATAATGACAT-TTGAAA-TATTAGAAAA-AATATTCATCATTCGAAAG-TT------AAAAA----TTA------GACT-------------TTAAAGTCTTAGCATTATTGAAATAATTTATGT-AATG-ATAAATT-ATTGTTCATAATGATTTGATACGCTTGCTATAGCAACCAA-ATT-AAACAAGATA-GCAAAAGTAGTATTAcaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatataaagaaaataatatcatatatattgatataaaaacagtatacagtattgaattaaactccagctagcaagtcagtaggtatatagagccctcaaatcagcgacagttacacatcttcatacgaagaatggattgagaattaggatacttcatgaagttccctgagcttctgatctgtacatctacaaataaatattccaaatataggcctatatgagtatatggtaagctaatagaaggcacatgattagtttaatatgttatcttgtcttaactcaagataaactgcaaaagatttaaatttaccgttttgtgtattcaaacattccgactcaggtatcatatcaatcatgcgcaatattgaaacacctttattattgttactaaatttacataggagataaagatatgtgctatgtgtgcataatccttaggcacatcaactcgtatgaaaaggtacccgagcttcaatacggaagtagcagtaattttttctgtattttttttttttttttttatttataaaatttcttataatctacttattcccatgaggatcatccaacaaatgcgtattatcattgcaatgtcagattatttcagaaactatgcacatatacttattataaaatatcacataattgttgtatactaaaggagtatttgagtgcagaactttagaaatatacgagagcataatagactgtctgaaatttttatcataatagcaaataatgacatttgaaatattagaaaaaatattcatcattcgaaagttaaaaattagactttaaagtcttagcattattgaaataatttatgtaatgataaattattgttcataatgatttgatacgcttgctatagcaaccaaattaaacaagatagcaaaagtagtattagcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|10 : ttgagacggctcgcaacacagccgatagacactgtattagagcattaaatttgagaaggcatcacttacctttctgattttcttacaactgacacatgccaaatataaatcctatctgtattatacgaattaacaaaattttatgcgcataattgccaaaaacaattctaacataaatttgggaaaataacgtgttgacattttcaaaaacatattttataatgagacgcttcaatacagttaacaaagctatacatatgaatacgttcgcatgaatacaacgaatgtaatataaaccacgtcagaaggctcatcagcatgtatatcaaataaaaaaaaatataaataaataatatatacaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttAGACTAC-TTGCT-ATGAGGCAAGCGGAT-------TTGC-----T-GA-TGCATCACT-ACCTTT-TGCGGACTTTTGATTATTCTT-GCAC---TGA-C---TGC--AA-ATAAATCCT--CT--ATT-A--CG-A-TTATAAAAA---TTTTA-TCCGC-T--TATC----------CAAAA-CAATTT---CATCAAGTTTGGGG-AGA--AACGTGTGTT-GACATTTTC--ATAACA-TTTT-TT-TAATGAGTgcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|11 : tgagtcggctcgcgcagcgagtACA-------------T----------------TTGAAAT-AGTTATGAAAATGAATAATTGGATTGTTAAT-ATG-TTTGATGCG-TTTCTA-GGCAACGAATGTT-AA--AAGATA-TG-AAAGTAA-ATTACA
gi|12 : ttttagtcttATGT---TGAAAT-AAAAAAATTATATATATATA-----------------TA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGTAAAA-CACCAT-GCT----TTTAG--tttttttttaaattcataaacatgtgcaccactactgggataggaatgagtcaatttgatgaggagaccataaatgtc
gi|13 : ggctagttgaaT-GCAA-GATGATGCCAT-TTGGAA-T-TTATAAAAAAA-ATT-ATCATTT--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------T
gi|14 : AGACTACCTTGCT-ATGAGGCAA----AT-------
gi|2 : gttattgagtcggctcgcgcagtgagtAGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-AAATGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACATCTGAGC---TGC--AA-ATAAATCCT--CTGTATT-A--C--A-TTATCAAGA---TTTTATTGCGC-TA-TTTC----------CAAAA-CAATTT---CATAAAGTTTTGGG-GGAATAAC--GTGTT-GACGTTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTG-CGCATGAATAC-ACG-ATGGTAATATAAACCACGTC--AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATATTATATATC-T-ATGTGTA-TTGA-ATATAAGACAC----GT-T-A-TATTGATTGT-AAA-CTCCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT------------------AT-CGAACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAAT---CT----------CTTCGTAC-TCTTCAAATAA---TGT-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-TTTGAA--G-CAC-TGATT--GTTTAAGATG--TT---TT---------------------------------------A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-GAC-TTCCGACAGTCAGGTA-CA-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACAGTG-ATG-TATG---TG--GCGTG-TATCGTAATCGGTAGCG--CGTCA-GACTTGCATGATGAGGAT-CCC-G--TTCAAATCA--GAAGG-AGC-GTAATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTACA-ATTTATT--TCCCCA-TTTAGATCA-CCAACA-AATGGG-T-TT-CCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATT-------------------GTGTTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAAC------------TGTC-TTA-GTCTGAATTTTGATC-AT-AT-GCAAAGAT-ATGCCAT-TTGGAATT-TTAT---A-AT-ATT-ATCTTTC--AAG-TT------AAAAA----TTA------GACT-------------T----------------TTGAAAT-A-TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCA-TTGCTA--GCAACCAATATT-AA--AAGATA-GC-AAAGT-A-ATTACA
gi|3 : GAAAT-AAAAAAATTATATATATATA--------------------TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAAACAC-AT-GCT----TTTAG--AGTCAATGAATGT-AT-GAAGCGACTCATTAAAA-ATATGTGAGAGTAT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGATT--GGGAGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-TTCCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCTTATTGA--GG-CAC--AATT--GTTTAAGATG--TT---TTGTTTTA-CTCA------------------------G---ATA--ACTTGTCAAAGTT--AA--TAA-ACTT--GGTT--GTTTA--CA-AAT-TTCCGA-AGTCAGGTA-TG-------TAGGTCAAATCAT-GCCCA--ATT--------TTTGTT-----TAT--AATT-TACA-----CGCTG-GTA-TATAC--TG--ACGTGGTGGCGTAATAGGTACCGT-CGTCA---------TGATGAGGGA-CCCGG--TTCAACTCC-TGAAAC-GGC-GGGGTTTTT---------------TT--------------A---TTCTTATA-TTTTATT--TCCCCT-TTTAGATCA-ACAGCA-TATGGT-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-ATTGTA-AT-ATACGTATTATAGAT-TAGACACAATATTAGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTATC------TTTGGAAATAT----GAGCATTAACTACTTTAAATAATGTCTTAA-GTTTGAATTTTGATC-AT-AT-GC-AAGATGATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTT--AAGTTT-----AAAAAA----TTA------GATTTTAAGTCTTTGCAT----------------TTGAAAT-ATTTATGTAAATGAATGA-TT-ATTGTTC-T-ATG-TTTGATGCG-TTGCTA-GGCATCCAATATT-AA--ATGATA-GC-AAAAT-A-ATTACA
gi|4 : A-ATATA-GACAGCT--AT-C-A-TATTGATTGT-AAA-AAC-AT-GCC----TTTAG--AGTCAGTGAG-GTCAT-T-G----CCCCTCCCAA-A-----------AT-CAGACG-CATG-TAACAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAAATTAGGATA-TGCATGAAGTTCC-TGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGT-GCCT-GAA--TGATGATATGGTG-GCT-ATTGAAAGGCCAC-TGATT--GTTTAAGA-G--TT---TTGTCTTATCTCA------------------------GATAA-A--ACTTGTTCAAGTTTCCA--TTTAACGC--G--TTTGTTTA--CA-AAC-TTCCGACAGTCGTGTA-tatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|4 : AT--AATT-TACA-----CATCGCAGG-TATGAGATG--GGGTG--G-CGACATCGGTAGCGC-GGTCAAGACT-GTATGCAGAGGGT-CCCGG--TTCAAATCCCTGAAGCTGGC-GTTATTTTTT---------TTTT----------------AA---T-CTTATATATTTATT--TCCCCCATTTAGATCA-CCA-CA-AATGGGGT-TT-TCA-TGC-ATTTCAGATTGATTT--GCAAT-AC-A-TGCA-ATCATA-GTATTATAGATATAGTCACAA-ATTGGTTGT-T-CTTT-AAGGAGTATTT--GTGCCAGTA-CCTTGATCTTGGAAATAT----GAGCAT----CAC---------TG-C-TTA-GTCTGAATTTGAATCAAT-AT-GC-AAGATAATGCCATCTTGGAA-T-TTATAACA-AA-ATT-ATCATTC--AAG-TTGAAAAAAAAAA----T--------GACT-------------TTTCAAGTCTTGCAA--TTGAAAT-ATTTATGTAAATGAATAA-TT-ATTGTCAAT-ATG-TTTGATGCC-TTGCTA-GGCAACCAATATTAAA--AAGATATGC-AGAGTAA-ATTACAataatttacacatcgcaggtatgagatggggtggcgacatcggtagcgcggtcaagactgtatgcagagggtcccggttcaaatccctgaagctggcgttattttttttttaatcttatatatttatttcccccatttagatcaccacaaatggggttttcatgcatttcagattgatttgcaatacatgcaatcatagtattatagatatagtcacaaattggttgttctttaaggagtatttgtgccagtaccttgatcttggaaatatgagcatcactgcttagtctgaatttgaatcaatatgcaagataatgccatcttggaatttataacaaaattatcattcaagttgaaaaaaaaaatgacttttcaagtcttgcaattgaaatatttatgtaaatgaataattattgtcaatatgtttgatgccttgctaggcaaccaatattaaaaagatatgcagagtaaattacattttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|5 : aatatagacagctatcatattgattgtaaaaacatgcctttagagtcagtgaggtcattgcccctcccaaaatcagacgcatgtaacacattcgtacgaaggagatggttggagaaattaggatatgcatgaagttcctgcagttctgcttcgtactcttcaaataattccaatgtaggtgcctgaatgatgatatggtggctattgaaaggccactgattgtttaagagttttgtcttatctcagataaaacttgttcaagtttccatttaacgcgtttgtttacaaacttccgacagtcgtgtaAGACTACCTTGCT--TGAGCCAA-------------TTGGAGA-GT--A-TGCATCACT-AC-TTT-TG----------AT-AT-CTT-ACAC---TGA-C---TGC--AA-ATA--TCCT--CTGTAT--A--CGGA-TTATCAA-------TTA-TGCGC-TA-TTTC----------CAAA--CAATTT---CATAA--TTTTTGG-AAAATA-C--GTGTT-GACATTTTC--TTAACA-TATTATT-TA----GGCGCTTC--ACAATA-CATT--A--CAGATTTAACC--A-ATAAA---GGG-CGCATGAATAC-ACG--T-GTAATATAA-CCA-GTCA-A-GCCTCATCAGCATGT---TGAAAT-AAAAAAAAAAGATATATAAAATATA-ATC-TTA--TATACTTGA-ATATAAGACACGT--AT-C-A-T---GATTTA-AAA-CACCAT-GCT----TTTAG--AGTCA-TGAG-GT-AT-TAG----CTC-T---CA-T-----------AT-CA-ACG-CATG-TAACAC-AT--TCGTACGA-GGAG-TGGTTTGGG-AGA--TTAG-ATACTGCATGAAGTTCC-TGCAT-TCTTGCTTCGTAC-TCTTCAAATAT---T-T-CCAA-TGTAGG-CGCCT-AAATTTGATTATATGGTG-GCT-TCTTGAAGG-CAC-TGATT--GTTTAAGATG---T---TTGTCTTG-C-CA------------------------G---ATA--ACTTG-CAAAGTTT-C----TT-ACGC--GGTTTTGTTTA--CAGAACTTTCTGACAGTCAGGTA-ttttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|6 : gagtcggctcgcgcacgagtTTTGTT-----TAT--AATTACATA----AC--TG-AAG-T-------G--GTG----G-CGTAATAGGTAGCGT-TGTCA-GGTTCACATGCAGACGGTGTCCGG--TTCAAATCCGTTGCAC-GG--ATGATTTTTT---------TTTT-----------------A---TTATTAGA-ATTTATT--TCCCCT-TTTAGATCA-CCAGTATAATGGT-T-TT-TCA-TGC-CTTTCAGATTTATTT--G--ATAAC-A-TGTT-TT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTT-CAGTAAC------TATGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TAAAGTTTGAATTCTGATC-AT-AT-A-AAGGGTAATACAAT-TTGGAA-T-TTATAAAATAG-A---ATCATTA--AAG-TT-----AAAAAAAAAATTAAGTCTTGACT-------------T----------------T-GAGAT-ATTTATGTAAATGAATAATGT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-GA--AATATA-GC-AAAGTAA-ATTACAtaattacgcatcgattgtacgag
gi|7 : t-A--TATT-TCGA-ATATAAGACAC-TAAAT-CAA-TATTGATTGTAAAA-CAGCACAGCTTTACTTTAGA-AGTCTGTAGG-AT-CT-CAG----CCC-T---AGTA-----------ATACA-AC--CATGAAA-CACAAT--TCG-ATGAAAG-GA--GTT----------TCA----CCCCCATGG------CCGCAG-TTCTCCAT-GT-----TTCAA----------------TGTAGGGCGCCTAAAA--TGACGATCTAGTG-GCT-ATTGAAGGC-TAA-TGGTTGGGTTTAAGATGATTT---TTTTCTTA-CTCATCTTTTCTTACTCAGACAAAGTCTG---A-ATAACCTGTCAAACGTG-CG--GTT-A-GCTTTTTTTTGTTTA--CA-AAC-TTCCGGAAGTCAGGTA-CGCGTATGCTAGGTCAAATCATAGCCCA-tatattctttttcttttacacacatgtgcactactactggaataggaatgagtaaattttaagagggagccataaatgtct
gi|8 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattatgtatgtaaatccgttttctattaacatgaaatgaaaaaaacACCACCTTGCTTATGAGGCAA----AT-------TTGGAGAAGTGGA-TGCAT--CT-ACCTatcaaatgtcatacccagtcaa
gi|8 : atTATCAAAAGACTTTTA--GCGC-TA-TCTTATCTATAGAGCGGGA-CAATTTT--CAATAAGTTTTGGGGAAAATAAC--GTGTTGGACATTTTCAAATAACAGTATA-TT-TCATGAGTCGCATCAAA--ATAGCATTT-ATCCAGCTATATACGAA-GTAAA---G-G-CGCATATATAT-Aatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacatatcaaaagacttttagcgctatcttatctatagagcgggacaattttcaataagttttggggaaaataacgtgttggacattttcaaataacagtatatttcatgagtcgcatcaaaatagcatttatccagctatatacgaagtaaaggcgcatatatata
gi|9 : ataccaccttgcttatgaggcaaatttggagaagtggatgcatctacctatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacaAGA-TACCTCTTC-A-GAGGCAA----ATATGCAAATCGGATAGGC-GA-TGCATCACT-ACCTTT-TGT---------ATTATTCTTTACACA-CTGA-C---GGC--AA-ATAAATCCT--CTGTATTTA--CG-A-TTAACAAAA---TGT-A-T-CGC-TA-TTTC----------CAAAA-CAATT----CATTAAGTTTTGGG-GGGAAAAT--GTGTT-GATATTT-C--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC----ATAAG---GTGCCGCATGAAAAC-ACG-AT-GTAAT
blockSeqs : T ATATGCAAA C A TAAA . . CGGACTTTTG TA T AT G . . . . TT . G . A GAC TTG . . ATCTATAGAG . TT C G G GT G AA G A . ACA G T TC GAA . TGC . ATG A C A A . . TTATATATCTATGTGTA . CTAA . A . A A C CA TTAC A G G T C . GCGACTCATTAAAAATATGTGAGAGT A A . A A A . A TGGG AA G T C C . C . TGT . TC A TT . T A C . GG AT . G T T TCTTTTCTTACTCAGACAAAGTCTGAATA T TCCA A G TTTT . G T C . CGTATGC G A A T G . . A CGCTGGTATATACTGACGTGGTGG T GACTT C AT TG . A CT T . A TTTTTTTTTTTTTTAA T . CA . A T G . . . . G GCA TA . T . C TA A TCTTT . C CCTTGAT . TT CTACTTTAAATAA T T A C A . . A A G C T . A . . . T GAAAAA AAAA AGTCTT TTTCAAGTCTTGCAA . G T G . . . G A . T . AA
blockSeqs : . GCGGAT G A TGGA . . T TA . A . . . . . T . . . G . TC . . . . T A G . . . . . . . AAA . T . A . TG . AT . . . . . . ATATAATCTTATATAC . CGT . . . A . C T . . A G . . . CCCCTCCCAAA . G . . A . . A GGG A G T C C . C . TTT . TC . . . . A . . . . . G . T GATAAA T TCA . T GG . . . C . . G A . . . . . . CATCGCAGGTATGAGATGGGGTGG C AGACT T AT T . C GT . . G TTTTTAA . . A . G . . . . . . G G TA . . . . TA G TGCT . . TC . TT CCACTTTAAATAA . A . T . . . A A G . . . T . . . . A . . TTAAGTCTTTGCAT . T T . . . . G . . . . AA
blockSeqs : . AT G G TGA . . . TA . . . . . . . T . . . A . TG . . . . T A G . . . . . . . A . T . . . GG . T . . TA . CGT . . . . . C T . . G G . . . CCCTAGTA . G . . . . . A GG A G T C C . C . TT . GC . . . . G . . . . . G . T GATA T GCG . G GG . . . C . . G A . . . . ACAGTGATGTATGTGGCGTGTAT T GGTTC C CA A . A T . . T TTTTTA . . T . G . . . . . . G G TA . . . . TA G TGCT . . AC . TT CAC . T . C . . . A A A . . . . . . . . A . . T . T T . . . . G . . . . AA
blockSeqs : . AT G . CGA . . . A . . . . . . . . . . . A . G . . . . T T G . . . . . . . A . . . . . G . . . . GCT . . . . . C T . . G G . . . CTCTCAT . . . . . . . A GG . . . . C . C . TT . T . . . . . . . . . . T . . GATA T AA . G GG . . . A . . . ACTGAAGTGGTGG . . . CA T . A . . . G TTA . . T . . . . . . . . T G T . . . . T . . . . C . T C . A . T . . . . G A . . . . . . . . A . . T . T . . . . . G . . . . A
blockSeqs : . AT G . TA . . . T . . . . . T . . . . . . . . . CGT . . . . . . T . . . A . . . CTCAT . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . AA . TC . G G . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . A
blockSeqs : . . C . . . . . . T . . T
blockSeqCons : TGGA* TA A* *** ** ** ** T*** ** AA*** T* G*** *** A******************* CGT** T* ** CCCTCAT******************** ** A* TT***** TC ** *** GATA***************************** TCG*** GG** ** ** CGGGTGTGATGACGTGGTGG*************** T* GGNTT* ** T* TTTTTA***************************** ** G**** TA TA TCT***** ** C******* **** TT CAC********** ** A***** T***************************** G* ** AA*
originalCons : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGT-GA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC--A--ATA-CATTT-A--CAGATTTATAC--A-ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAATATATATC-T-A--TATA-TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG----CTCAT---AA-A-----------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAA---T-T-CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTTA-CTCA------------------------G---A-A--ACTTGTCAAAGTTT-CA--TTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACA----ACGNTG-ANG-TATG---TG--GCGTG-TG-CGTAATCGGTAGCGC-CGTCA-GACTCGCATGAAGAGGGT-CCCGG--TTCAAATCCGTGAAGC-GGC-GTGATTTTTT---------TTTTTTTTTTTT-------TAA---TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTAACCACTTTAAATAATGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
finalCons : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGTGGA-TGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTA-TGCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTCAA---ATA-CATTT-A--CAGATTTATACG---ATAAA---GTG-CGCATGAATAC-ACG-AT-GTAATATAAACCACGTCA-AAGGCTCATCAGCATGT---TGAAAT-AAAAAAATTATATATATATAA-------------------TTGA-ATATAAGACACGT--GT-C-A-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAGCCCTCAT--------------------AT-CAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATAATT-----CCAA-TGTAGGTCGCCT-AAA--TGATGATATGGTG-GCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCTTA-CTCAGATA-----------------------------ACTTGTCAAAGTTTCG---TTT-ACGCGG--TTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GCCCA-TATTG------CTTTGTT-----TAT--AATT-TACACGGGTGTGATGACGTGGTGG---------------CGTAATCGGTAGCGT-CGTCAGGNTT-GCATGAAGAGGGT-CCCGG--TTCAAATCCT-GAAGC-GGC-GTGATTTTTTTTTTA-----------------------------TTCTTATA-ATTTATT--TCCCCN-TTTAGATCA-CCAGCA-AATGGG-T-TT-TCA-TGC-ATTTCAGATTGATTTG----ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGTTCT-----AAGGAGTATTT--GTG-CAGTAC-------TTTGGAAATAT----GAGCATTAACAC----------TGTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TTA-----AAAAA----TTA------GACTT-----------------------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTAG-GCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTATACACATGTGCACTACTACTGGAATAGGAATAAGTAATTTT
Unaligned ( gi|16 ): TACAAAGTCTCTTTCATCGGAGTAAGATTTAAAAAAAA
Alignments
lowQualScore : 2222222222222 222 4444444444 11 111 11 11 11 111 2222222222 2222 11 222 11 22222 111 3333 1 1111 11111 22222222222 55555555555555555 11111 1 1 1111 11 111111 5555555555555555555555 1 11111 1 11111111 11 111 666666666666666666666666666666666666666 222222 1111 1 3333333333 3333333 11 22222 666666666666666 222222 22222 11 11111 111 4444444444444 3333333333 222222 444444444444 11111 33333333 11 22222222 1111 666666666666666666666666666 1 222222 1111 111111 999999999999999999999999999999 1
lowQualScore : 6 3333333333333 6 5 222 6 8 3333333333 11 0 8 88 8 444 11 8 0 11 88 11 8 8 1 111 99 6 6 9999999999 6 0000 1 2 6 99 6 55 6 6 6 666 0 8 88 11 66666 444 888 8 88 8 0 3 55 1111 2 0 4444 5 5 77777 5 77777777777 55555555555555555 0 5 11 44444 1 0 1 5 4 55 2222 33 1 1 6 6 6 333333 1111111111111111111111 5 6 6 3 6 99 3 22222 99 2 3 0 2 6 2 1 6 44444444 6 99 6 99 6 6 5 6 6 55 99 111 333333333333333333333333333333333333333 1 444444 6 2 4444 99 6 3 2 2222222222 5 5 8 8 7 1111111 0 11 00000 0 5 222222222222222 8 1 8 333333 00000 0 5 5 66 99999 1 22 99 8 8 666 999 8 1 4444444444444 0 5555555555 333333 8 111111111111 8 1 8 6 8 8 8 8 8 8 5 22222 11 8 8 8 8 11 0 0 8 77777777 11 8 99999999 7777 777777777777777777777777777 0 8 1 8 1 8 8 6 7 9 4 6 6 6 3 6 6 99 6 444444 4444 999999 333333333333333333333333333333 6 3 1 6 6 6 6 77 6 99 6 6 777
lowQualScore : . ............. . . ... . . .......... .. . . .. . ... .. . . .. .. .. . . . ... .. . . .......... . .... . . . .. . .. . . . ... . . .. .. ..... ... ... . .. . . . .. .... . . .... . . ..... . ........... ................. . . .. ..... . . . . . .. .... .. . . . . . ...... ...................... . . . . . .. . ..... .. . . . . . . . . ........ . .. . .. . . . . . .. .. ... ....................................... . ...... . . .... .. . . . .......... . . . . . ....... . .. ..... . . ............... . . . ...... ..... . . . .. ..... . .. .. . . ... ... . . ............. . .......... ...... . ............ . . . . . . . . . . . ..... .. . . . . .. . . . ........ .. . ........ .... ........................... . . . . . . . . . . . . . . . . . .. . ...... .... ...... .............................. . . . . . . . .. . .. . . ...
lowQualScore : 7 1111111111111 7 7 888 7 0 0000000000 66 8 0 66 0 000 00 0 8 00 88 00 0 0 7 777 22 7 7 2222222222 7 0000 0 5 7 22 7 88 7 7 7 666 8 0 88 00 44444 000 666 0 88 0 8 2 88 8888 5 0 8888 7 7 66666 7 11111111111 44444444444444444 1 0 44 33333 4 7 4 7 3 99 1111 66 0 0 7 7 7 555555 5555555555555555555555 2 7 7 3 7 22 2 55555 88 5 2 8 5 7 5 0 7 33333333 7 77 7 22 7 7 7 7 7 88 22 777 222222222222222222222222222222222222222 7 888888 7 5 2222 22 7 3 5 3333333333 0 6 0 0 0 2222222 8 00 00000 8 6 222222222222222 0 4 0 000000 00000 8 0 0 66 00000 4 00 44 0 0 666 444 0 4 0000000000000 8 0000000000 000000 0 000000000000 0 0 0 4 0 0 0 0 0 0 0 00000 66 0 0 0 0 66 8 8 2 66666666 00 0 00000000 0000 444444444444444444444444444 8 0 0 0 4 0 0 7 3 8 2 7 7 7 3 7 7 22 7 000000 2222 222222 999999999999999999999999999999 7 2 7 7 7 7 7 77 7 22 7 7 555
consensus : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGCGGATGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTAT-GCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC-A-AATA-CATTT-A--CAGATTTATACG-A--TAAA---GTG-CGCATGAATAC-ACG-ATG-TAATATAAACCACGTCA-A-GGCTC-ATCAGCATGT---TGAAAT-AAA-AAAAT----TATAT-A-----------TATATA----------------ATTGA-ATATAAGACACGTA--T-CA-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG--CC--CTC---AT-----------------ATCAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATA---AT-T-CC-AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCT--------------T-A-CTC-AGA-----------T--AACTTGTCAAAGTTT-C--ATTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATTTACA-CG--GG-G-TA-ACTG-ACGT-G------GTGTG---CGTAATCGGTAGCGT-CGTCAGGCTCGCATGAAGAGGGT-CCCG-GTTCAAAT-CC--TGAAGC-GGC-GTGATT-------------TTTTTTTT----------ATTCTTAT------A-ATTTATT------------T-CCCCATTTAGATCA-CCAGCA-AAT-GGGT-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTA-AC-AC---------T---------GTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
Reference ( family-4496 ) : AGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGTGGATGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACA-CTGA-C---TGC--AA-ATAAATCCT--CTGTATT-A--CG-A-TTATCAAAA---TTTTAT-GCGC-TA-TTTC----------CAAAA-CAATTT---CATNAAGTTTTGGG-AGAATAAC--GTGTT-GACATTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC-A-AATA-CATTT-A--CAGATTTATACG-A--TAAA---GTG-CGCATGAATAC-ACG-ATG-TAATATAAACCACGTCA-AAGGCTC-ATCAGCATGT---TGAAAT-AAA-AAAAT----TATAT-A-----------TATATA----------------ATTGA-ATATAAGACACGTG--T-CA-TATTGATTGT-AAA-CACCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG--CC--CTC---AT-----------------ATCAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATA---AT-T-CC-AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-ATTGAAAGG-CAC-TGATT--GTTTAAGATG--TT---TTGTCT--------------T-A-CTC-AGA-----------T--AACTTGTCAAAGTTT-C--GTTT-ACGC--GGTTTTGTTTA--CA-AAC-TTCCGACAGTCAGGTA-CG-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATTTACA-CG--GGTG-TG-A-TG-ACGT-G------GTG-G---CGTAATCGGTAGCGT-CGTCAGGNTTGCATGAAGAGGGT-CCCG-GTTCAAAT-CC--TGAAGC-GGC-GTGATT-------------TTTTTTTT----------ATTCTTAT------A-ATTTATT------------T-CCCCNTTTAGATCA-CCAGCA-AAT-GGGT-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-T-C--T-AAGGAGTATTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTA-AC-AC---------T---------GTC-TNA-GTCTGAATTTTGATC-AT-AT-GCAAAGATAATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTC--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------TTGAAAT-ATTTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-AA--AAGATA-GC-AAAGTAA-ATTACA
gi|1 : AA----AT-------TTG-AGAAG-----GCATCACTTACCTTTCTG----------ATT-TTCTT-ACA-A-CTGA-CACATGCCAAATATAAATCCTATCTGTATT-ATACG-AATTAACAAAA---TTTTAT-GCGCATAATTGC----------CAAAAACAATTCTAACATAAA--TTTGGG-AAAATAAC--GTGTT-GACATTTTCA-AAAACA-TATT-TTATAATGAGACGCTTC---AATA-CAGTTAA--CAAAGCTATACATA--TGAATACGTT-CGCATGAATACAACGAATG-TAATATAAACCACGTCAGAAGGCTC-ATCAGCATGTATATCAAATAAAA-AAAAA----TATAA-A-----------TAAATA----------------AT----ATATA
gi|1 : ttgagacggctcgcaacacagccgatagacactgtattagagcattAT-AAAGAAAAT----AATATCA-----------TATATA-----------------TTGATATA-AAAACA-GTA--TACAGTATTGAAT-T-AAA-CTCCA--GCT-------AGCAAGTCAGT-AG-GT-ATATAGAGCC--CTC---AA-----------------ATCAG-CGACAGT-TA-CAC-ATCTTCATACGAAGAA--TGGAT--TG-AGAA-TTAGGATACTTCATGAAGTTCCCTG-AGCTTCTGATCTGTACATCTACAAATAAATAT-T-CCAAATATAG---GCCT-ATA--TGAGTATATGGTAAGCT-AATAGAAGG-CACATGATTA-GTTTAATATG--TTATCTTGTCT--------------TAA-CTCAAGA-----------T--AAACTGCAAAAGATT-TAAATTT-AC-C---GTTTTGTGTATTCA-AACATTCCGAC--TCAGGTATCA-------TA--TC-AATCAT-GCGCAATATTGAAACACCTTTATTATTGTTACTAAATTTACA-TA--GGAGATA-A-AG-ATAT-GTGCTATGTGTG---CATAATCCTTAG-GCACATCA-ACTCGTATGAAAAGGTA-CCCGAGCTTCAAT-AC--GGAAGT-AGCAGTAATTTTTTCTGTATTTTTTTTTTTT----------TTTTTTATTTATAAA-ATTTCTTATAATCTACTTAT-TCCCATGAGGATCATCCAACA-AAT-GCGTATTATCATTGCAATGTCAGATT-ATTTCAG--A-AACTA-TGCACAT-ATACTTATTATAAA-ATA-TCAC-ATAATTGTTGTATAC--TAAAGGAGTATTTGAGTG-CAGAA-C------TTTAGAAATATACGAGAGCATAATAG-AC---------T---------GTC-TGA------AATTTTTATC-ATAATAGCAA--ATAATGACAT-TTGAAA-TATTAGAAAA-AATATTCATCATTCGAAAG-TT------AAAAA----TTA------GACT-------------TTAAAGTCTTAGCATTATTGAAATAATTTATGT-AATG-ATAAATT-ATTGTTCATAATGATTTGATACGCTTGCTATAGCAACCAA-ATT-AAACAAGATA-GCAAAAGTAGTATTAcaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatataaagaaaataatatcatatatattgatataaaaacagtatacagtattgaattaaactccagctagcaagtcagtaggtatatagagccctcaaatcagcgacagttacacatcttcatacgaagaatggattgagaattaggatacttcatgaagttccctgagcttctgatctgtacatctacaaataaatattccaaatataggcctatatgagtatatggtaagctaatagaaggcacatgattagtttaatatgttatcttgtcttaactcaagataaactgcaaaagatttaaatttaccgttttgtgtattcaaacattccgactcaggtatcatatcaatcatgcgcaatattgaaacacctttattattgttactaaatttacataggagataaagatatgtgctatgtgtgcataatccttaggcacatcaactcgtatgaaaaggtacccgagcttcaatacggaagtagcagtaattttttctgtattttttttttttttttttatttataaaatttcttataatctacttattcccatgaggatcatccaacaaatgcgtattatcattgcaatgtcagattatttcagaaactatgcacatatacttattataaaatatcacataattgttgtatactaaaggagtatttgagtgcagaactttagaaatatacgagagcataatagactgtctgaaatttttatcataatagcaaataatgacatttgaaatattagaaaaaatattcatcattcgaaagttaaaaattagactttaaagtcttagcattattgaaataatttatgtaatgataaattattgttcataatgatttgatacgcttgctatagcaaccaaattaaacaagatagcaaaagtagtattagcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|10 : ttgagacggctcgcaacacagccgatagacactgtattagagcattaaatttgagaaggcatcacttacctttctgattttcttacaactgacacatgccaaatataaatcctatctgtattatacgaattaacaaaattttatgcgcataattgccaaaaacaattctaacataaatttgggaaaataacgtgttgacattttcaaaaacatattttataatgagacgcttcaatacagttaacaaagctatacatatgaatacgttcgcatgaatacaacgaatgtaatataaaccacgtcagaaggctcatcagcatgtatatcaaataaaaaaaaatataaataaataatatatacaaagtctctttcatcgtagtaaaattaaaaaaaaaaaaaagatggtttagagtttttttatAGACTAC-TTGCT-ATGAGGCAAGCGGAT-------TTG------CTGATGCATCACT-ACCTTT-TGCGGACTTTTGATTATTCTT-GCAC---TGA-C---TGC--AA-ATAAATCCT--CT--ATT-A--CG-A-TTATAAAAA---TTTTAT-CCGC-T--TATC----------CAAAA-CAATTT---CATCAAGTTTGGGG-AGA--AACGTGTGTT-GACATTTTC--ATAACA-TTTT-TT-TAATGAGTgcaatttttgtcttttatacaacactgtcacctaactggaactaggaatgaaagttaaaattttaaagggccattaaatgactctatattta
gi|11 : tgagtcggctcgcgcagcgagtACA-------------T----------------TTGAAAT-AGTTATGAAAATGAATAATTGGATTGTTAAT-ATG-TTTGATGCG-TTTCTA-GGCAACGAATGTT-AA--AAGATA-TG-AAAGTAA-ATTACA
gi|12 : ttttagtcttATGT---TGAAAT-AAA-AAAAT----TATAT-A-----------TATATAT---------------ATTGA-ATATAAGACACGTG--T-CA-TATTGATTGTAAAA-CACCAT-GCT----TTTAG--tttttttttaaattcataaacatgtgcaccactactgggataggaatgagtcaatttgatgaggagaccataaatgtc
gi|13 : ggctagttgaaT-GCAA-GATGATGCCAT-TTGGAA-T-TTATAAAAAAA-ATT-ATCATTT--AAG-TT-----AAAAAA----TTA------GACT-------------T----------------T
gi|14 : AGACTACCTTGCT-ATGAGGCAA----AT-------
gi|2 : gttattgagtcggctcgcgcagtgagtAGACTACCTTGCT-ATGAGGCAA----AT-------TTGGAGAAGTAAATGCATCACT-ACCTTT-TG----------ATTATTCTT-ACACATCTGAGC---TGC--AA-ATAAATCCT--CTGTATT-A--C--A-TTATCAAGA---TTTTATTGCGC-TA-TTTC----------CAAAA-CAATTT---CATAAAGTTTTGGG-GGAATAAC--GTGTT-GACGTTTTC--ATAACA-TATT-TT-TAATGAGTCGCTTC-A-A-TA-CATTT-A--CAGATTTATAC--A--TAAG---GTG-CGCATGAATAC-ACG-ATGGTAATATAAACCACGTCA-A-GGCTC-ATCAGCATGT---TGAAAT-AAA-AAAAT----TATAT-A-----------TATATATTATATATCTATGTGTATTGA-ATATAAGACACGT-----TA-TATTGATTGT-AAA-CTCCAT-GCT----TTTAG--AGTCAGTGAG-GT-AT-TAG--C----TC---AT-----------------ATCGAACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAA-TTAGGATACTGCATGAAAT------------CT-CTTCGTAC-TCTTCAAATA---ATGT-CC-AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCT-TTTGAA--G-CAC-TGATT--GTTTAAGATG--TT---TTA------------------------------------------AACTTGTCAAAGTTT-C--ATTT-ACGC--GGTTTTGTTTA--CA-GAC-TTCCGACAGTCAGGTA-CA-------TAGGTCAAATCAT-GC-CCATATTG------CTTTGT--TTAT-----AATTTACAACA--G----TG-A-TGTATGT-G------GCGTGTATCGTAATCGGTAGCG--CGTCAGACTTGCATGATGAGGAT-CCCG--TTCAAAT-CA---GAAGG-AGC-GTAATT-------------TTTTTTTTTTTTTTTTTAATTCTTAC------A-ATTTATT------------T-CCCCATTTAGATCA-CCAACA-AAT-GGGT-TT-CCA-TGC-ATTTCAGATTGATTT--G--ATAAC-A-TGCA-AT-ATACGTATTATAGATATAGTCACAATATT-------------------GTGTTT--GTG-CAGTA-C------TTTGGAAATAT----GAGCATTA----AC---------T---------GTC-TTA-GTCTGAATTTTGATC-AT-AT-GCAAAGAT-ATGCCAT-TTGGAATT-TTAT---A-AT-ATT-ATCTTTC--AAG-TT------AAAAA----TTA------GACT-------------T----------------TTGAAAT-A-TTATGTAAATGAATAATTT-ATTGTTCAT-ATG-TTTGATGCA-TTGCTA--GCAACCAATATT-AA--AAGATA-GC-AAAGT-A-ATTACA
gi|3 : GAAAT-AAA-AAAAT----TATAT-A-----------TATATA-----------------TTGA-ATATAAGACACGTG--T-CA-TATTGATTGT-AAAACAC-AT-GCT----TTTAG--AGTCAATGAATGT-AT-GAA--GCGACTC---ATTAAAAATATGTGAGAGTATCAGACG-CATG-TA-CAC-AT--TCGTACGAAGGAGATGATT--GGGAGAA-TTAGGATACTGCATGAAGTTCCCTGCAG-TTCTGCTTCGTAC-TCTTCAAATA---AT-TTCC-AATGTAGGTCGCCT-AAA--TGATGATATGGT-GGCTTATTGA--GG-CAC--AATT--GTTTAAGATG--TT---TTGTTT--------------T-A-CTC-AGA-----------T--AACTTGTCAAAGTT--A--ATAA-ACTT--GGTT--GTTTA--CA-AAT-TTCCGA-AGTCAGGTA-TG-------TAGGTCAAATCAT-GC-CCA-ATT--------TTTGT--TTAT-----AATTTACA-CGCTGGTA-TATACTG-ACGT-G------GTG-G---CGTAATAGGTACCGT-CGTCA--------TGATGAGGGA-CCCG-GTTCAACT-CC--TGAAAC-GGC-GGGGTT-------------TT---TTT----------ATTCTTAT------A-TTTTATT------------T-CCCCTTTTAGATCA-ACAGCA-TAT-GGTT-TT-TCA-TGC-ATTTCAGATTGATTT--G--ATAAC-ATTGTA-AT-ATACGTATTATAGAT-TAGACACAATATTAGTTGT-TGC--T-AAGGAGTATTT--GTG-CAGTATC------TTTGGAAATAT----GAGCATTA-ACTACTTTAAATAAT---------GTCTTAA-GTTTGAATTTTGATC-AT-AT-GC-AAGATGATGCCAT-TTGGAA-T-TTATAAAA-AA-ATT-ATCATTT--AAGTTT-----AAAAAA----TTA------GATTTTAAGTCTTTGCAT----------------TTGAAAT-ATTTATGTAAATGAATGA-TT-ATTGTTC-T-ATG-TTTGATGCG-TTGCTA-GGCATCCAATATT-AA--ATGATA-GC-AAAAT-A-ATTACA
gi|4 : A-ATATA-GACAGCTA--T-CA-TATTGATTGT-AAA-AAC-AT-GCC----TTTAG--AGTCAGTGAG-GTCAT-TGC--CC--CTCCCAAA-----------------ATCAGACG-CATG-TAACAC-AT--TCGTACGAAGGAGATGGTT--GG-AGAAATTAGGATA-TGCATGAAGTTCC-TGCAG-TTCTGCTTCGTAC-TCTTCAAATA---AT-T-CC-AATGTAGGT-GCCT-GAA--TGATGATATGGT-GGCT-ATTGAAAGGCCAC-TGATT--GTTTAAGA-G--TT---TTGTCT--------------T-ATCTC-AGA-----------TAAAACTTGTTCAAGTTTCC--ATTTAACGC--G--TTTGTTTA--CA-AAC-TTCCGACAGTCGTGT------------------AATAAT-TT-ACACATCG------C---AG--GTAT-----G----AGA-TG--GG-G-TG-G-CG-ACATCG------GTA-G---CG----CG---------GTCAAGACTGTATGCAGAGGGT-CCCG-GTTCAAATCCC--TGAAGCTGGC-GTTATT-------------TTTTTTTT----------AATCTTAT------ATATTTATT------------TCCCCCATTTAGATCA-CCA-CA-AATGGGGT-TT-TCA-TGC-ATTTCAGATTGATTT--GCAAT-AC-A-TGCA-ATCATA-GTATTATAGATATAGTCACAA-ATTGGTTGT-T-CTTT-AAGGAGTATTT--GTGCCAGTA-CCTTGATCTTGGAAATAT----GAGCAT----C-AC---------T---------G-C-TTA-GTCTGAATTTGAATCAAT-AT-GC-AAGATAATGCCATCTTGGAA-T-TTATAACA-AA-ATT-ATCATTC--AAG-TTGAAAAAAAAAA----T--------GACT-------------TTTCAAGTCTTGCAA--TTGAAAT-ATTTATGTAAATGAATAA-TT-ATTGTCAAT-ATG-TTTGATGCC-TTGCTA-GGCAACCAATATTAAA--AAGATATGC-AGAGTAA-ATTACAtatttttttctttatacacatatgcactactactggaataggaatgagtaaattttaagaggggacattaatgcc
gi|5 : AGACTACCTTGCT--TGAGCCAA-------------TTGGAGA-GT--ATGCATCACT-AC-TTT-TG----------AT-AT-CTT-ACAC---TGA-C---TGC--AA-ATA--TCCT--CTGTAT--A--CGGA-TTATCAA-------TTAT-GCGC-TA-TTTC----------CAAA--CAATTT---CATAA--TTTTTGG-AAAATA-C--GTGTT-GACATTTTC--TTAACA-TATTATT-TA----GGCGCTTC-ACAATA-CATT--A--CAGATTTAACCA-A--TAAA---GGG-CGCATGAATAC-ACG--TG-TAATATAA-CCA-GTCA-A-GCCTC-ATCAGCATGT---TGAAAT-AAA-AAAAAAAGATATAT-AAAATATAATCTTATATA----------------CTTGA-ATATAAGACACGTA--T-CA-T---GATTTA-AAA-CACCAT-GCT----TTTAG--AGTCA-TGAG-GT-AT-TAG--CT--CTC---AT-----------------ATCA-ACG-CATG-TAACAC-AT--TCGTACGA-GGAG-TGGTTTGGG-AGA--TTAG-ATACTGCATGAAGTTCC-TGCAT-TCTTGCTTCGTAC-TCTTCAAATA---TT-T-CC-AATGTAGG-CGCCT-AAATTTGATTATATGGT-GGCT-TCTTGAAGG-CAC-TGATT--GTTTAAGATG---T---TTGTCT--------------T-G-C-C-AGA-----------T--AACTTG-CAAAGTTT-C----TT-ACGC--GGTTTTGTTTA--CAGAACTTTCTGACAGTCAGGTA-ttttttttctttatgacacatgtacactactactggaaaggaagagtaaagttttaagagggggccattcaatgcct
gi|6 : gagtcggctcgcgcacgagtTTTGT--TTAT-----AATT-ACA----------TA-ACTG-AAGT-G------GTG-G---CGTAATAGGTAGCGT-TGTCAGGTTCACATGCAGACGGTGTCCG-GTTCAAAT-CCGTTGCA-C-GG--ATGATT-------------TTTTTTTT----------ATTATTAG------A-ATTTATT------------T-CCCCTTTTAGATCA-CCAGTATAAT-GGTT-TT-TCA-TGC-CTTTCAGATTTATTT--G--ATAAC-A-TGTT-TT-ATACGTATTATAGATATAGTCACAATATTGGTTGT-TGC--T-AAGGAGTATTT--GTT-CAGTAAC------TATGGAAATAT----GAGCATTA-ACCAC---------TTTAAATAATGTC-TAAAGTTTGAATTCTGATC-AT-AT-A-AAGGGTAATACAAT-TTGGAA-T-TTATAAAATAG-A---ATCATTA--AAG-TT-----AAAAAAAAAATTAAGTCTTGACT-------------T----------------T-GAGAT-ATTTATGTAAATGAATAATGT-ATTGTTCAT-ATG-TTTGATGCG-TTGCTA-GGCAACCAATATT-GA--AATATA-GC-AAAGTAA-ATTACAtaattacgcatcgattgtacgag
gi|7 : t-ATG-TA-TGTAAATC-CGTT------TTCTATTAACATG------AAAT-GAA-AAAA--------AC-A-----------TAT-T------------------TCGA-ATATAAGACAC-TAAAT-CAATATTGATTGTAAAA-CAGCACAGCTTTACTTTAGA-AGTCTGTAGG-AT-CT-CAG--CC--CTA---GT-----------------AATACAAC-CATGAAA-CACAAT--TCG-ATGAAAG-GA--GTT----------TCA----CCCCCATGG------CCGCAG-TTCTCCAT-GT-----TTCAA----------------TGTAGGGCGCCTAAAA--TGACGATCTAGT-GGCT-ATTGAAGGC-TAA-TGGTTGGGTTTAAGATGATTT---TTTTCTTACTCATCTTTTCTT-A-CTC-AGACAAAGTCTGAAT--AACCTGTCAAACGTG-C--GGTT-A-GCTTTTTTTTGTTTA--CA-AAC-TTCCGGAAGTCAGGTA-CGCGTATGCTAGGTCAAATCATAGC-CCAtatattctttttcttttacacacatgtgcactactactggaataggaatgagtaaattttaagagggagccataaatgtct
gi|8 : agtcgggtcgcgtagcgagcctactacctgccatcaaggctgattctcgcgatttgcctcttccactacttgatggtacgacactgaatatagttgtggaggctgtggtgtaaatattACCACCTTGCTTATGAGGCAA----AT-------TTGGAGAAGTGGATGCAT--CT-ACCTatcaaatgtcatacccagtcaa
gi|8 : atTATCAAAAGACTTTTA--GCGC-TA-TCTTATCTATAGAGCGGGA-CAATTTT--CAATAAGTTTTGGGGAAAATAAC--GTGTTGGACATTTTCAAATAACAGTATA-TT-TCATGAGTCGCATCAA-AATAGCATTT-ATCCAGCTATATACG-AAGTAAA---G-G-CGCATATATAT-Aatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacatatcaaaagacttttagcgctatcttatctatagagcgggacaattttcaataagttttggggaaaataacgtgttggacattttcaaataacagtatatttcatgagtcgcatcaaaatagcatttatccagctatatacgaagtaaaggcgcatatatata
gi|9 : ataccaccttgcttatgaggcaaatttggagaagtggatgcatctacctatcttaaagcctaagacaagaatattccgtctagtggagccactcgacgcagaagcgcataatcgcgcctggagccaaaactgaacaAGA-TACCTCTTC-A-GAGGCAA----ATATGCAAATCGGATAGGCG-ATGCATCACT-ACCTTT-TGT---------ATTATTCTTTACACA-CTGA-C---GGC--AA-ATAAATCCT--CTGTATTTA--CG-A-TTAACAAAA---TGT-AT--CGC-TA-TTTC----------CAAAA-CAATT----CATTAAGTTTTGGG-GGGAAAAT--GTGTT-GATATTT-C--ATAACA-TATT-TT-TAATGAGTCGCTTC---AATA-CATTT-A--CAGATTTATAC--A--TAAG---GTGCCGCATGAAAAC-ACG-ATG-TAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTATACACATGTGCACTACTACTGGAATAGGAATAAGTAATTTT
Unaligned ( gi|16 ): TACAAAGTCTCTTTCATCGGAGTAAGATTTAAAAAAAA