lowQualScore : 22222222222222222222222222222222222222222222222
lowQualScore : 11 2222 66666666666666666666666666666666666666666666666666666666666666666 1 1111 1111 11111111 444444444444444444 11 4 1 4 666 1 44444444 1 1 6666666666666666 4 1 66666666666666666666666666666666666666666666666
lowQualScore : 88 4 4 1 5555 33 66666 444 2 2 0 22222222222222222222222222222222222222222222222222222222222222222 0 2 2 8888 0000 44444444 88 3 999999999999999999 888 11 0 5 6 0 111 5 6 66666666 0 7 0000000000000000 0 5 22222222222222222222222222222222222222222222222 6
lowQualScore : .. . . . .... .. ..... ... . . . ................................................................. . . . .... .... ........ .. . .................. ... .. . . . . ... . . ........ . . ................ . . ............................................... .
lowQualScore : 22 1 5 4 5555 77 77777 777 7 5 1 44444444444444444444444444444444444444444444444444444444444444444 2 5 5 0000 3333 55555555 55 7 333333333333333333 999 00 0 0 0 0 000 0 0 00000000 5 0 0000000000000000 0 0 00000000000000000000000000000000000000000000000 0
consensus : TTGATTTTTCCAACATCGGACCAAAAATC-AAATTGGG--AAT-----TC---C-CAAA-TTGATA----CG-AT-T---A----TT-A-T-----TTT----TTG-----------G----TCGN--C-CAATGAAAACTTGCGT-C-TCTAATTCACT--T-TCG---A----CTAG--GTCTTGCACTCTAG-----C-GT--A--A--ACAAAGATG--TT--CTTAAGTATNNNNNNNCTTTAGCTGTAAACAAAGATG--ATTTCCTTGTAGGTTGTAGTGGCCGNTTTCGATGTTTTAAATTGTTCA--CAATTCATACAATAAA---CGATCTG-ATATTTTCAGTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
Reference ( gi|1 ) : TTGATTTTTCGAACACCGAACCAAAAATC-AAATTGGG--AAT-----TC---C-CAAA-TTGATA----TG-AT-T---A----TT-A-T-----TTT----ATG-----------G----TCGA--C-CAATGAAAACTCGCGT-C-TCTAATTCACT--C-TCG---A----CTAG--GTTTTGCACTCTAA-----C--T--A--A-TACAAAGATG--TT--CTTAA-TATTTGAAGGCTGTAACTG-AAACAAAGATGTCGTTTATTCGTAGGCTTTAGATGCCGGTTACGATGTTTTAAATTGTTCAGTCAATT-ATACAATCAAGTCCGGAGTGTATATTCTTAAT----------ATTTGGGTT---AC-GCTACAGTT
gi|5 : TTTATTTTTCTAATATCGGACGAAAAAT--AAATTGAG--AAT-----TC---C-AAAA-TTGAT---------------------C-A-T-----T---------------------------------CAATGAAACTTTGCAT-C-TTCAA-TCACT--T-TCG---A----CTGG--GTCTTGCATTCCAA-----C--T--
gi|18 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATTTCTCCAGCATTGAACAAAAATTT-GAATTGGG--AATTTTAATT---T-CAAA-TTGATA----TC-ATATTG-A----TT-A-TACAAGTTT----TTG-----------GTAGTTCGA--T-CAAAGAAAGCgtagacatgaatggccgaca
gi|21 : catTTGATTC----AAGATTGGACCAAAG--T-GAATTTTG--AAT-----TT---C-CAAAATTGACA----CG-AT-TG--G----TT-G-C-----TTT----TTG-----------G----TCTT--G-CAATTAAA
gi|16 : aTGATTTTTCCAACGTCGGACGAAAAAG--AAATTGAG--AAT-----TT---C-CAAA-TTGATG----CG-AT-T---AG---TT-A-T-----TTTTAAAATAATCATTGTTTTG----TCGT--T-CAGTGAACATTTGCGT-C-TTTAAT
gi|15 : TGATTATT--AA-ATCGGACCAAAA--C-ACATTGGG--AAT-----TC---C-CAAA-T--ATA----CG-AT-T---AG---TT-G-C-----TTT----TTG-----------T----TC-ATTC-CAATGAAAATTGGTGT-C-TCTAATCC
gi|14 : acTGATTTTTTTCAAATTGAACCA-AAATT-ATATTGAG--AAA-----TCAGAC-CA----------------AT-T---A----TTCA-T-----TTT----TTG-----------G----TCA-----CAATGAAAAGT-GCAT-C-TCTATTTC-CT--T-TCA---G----CTA----CCTTGCACTATAA-----T--T--ttgcacgctagctgtttaaa
gi|9 : catgGATTATT--AACATCGGACCAAAA--C-ACATTGGG--AAT-----TC---C-CAAA-TTTATA----CG-AT-T---AGTTGCT-A-T-----TTT-----TG-----------T----TCAT--C-CAATGAAAATTGGTGT-C-TCTAA-TCGCTTGC-ACG--------CTAGCTGTTTggctttgtaattagtgaaat
gi|24 : tgtttttatcaaactaaagtagcgatcgagcggaacataccgactgACTTTTCAAAGACTGGACCCAAAAT--AAACTGGT--AGT-----TC---C-CAAA-TTGATA----TG-AT-T---GC---TT-A-T-----aa
gi|10 : attTTTTTCCAACCTTAAACCAAAAATG-AAA-TGGG--GAT-----TC---C-AAAA--TGAAA----CG-AT-TATGA----TT-A-T-----TTT----A-------------G----T-GA--TACAATAAGTACTCGCGT-
gi|2 : tttgaggtaaatatcataagtataaatTCCAACATTGGACCAAAAAT--AAA---GG--AGT-----TC---C----------------------T---A----TT---------TTT----GTC-----------G----TCAA--G-GAG-GAAGACTGGTAT-C-TC--AT-CACT--T-TCG---C----CAAG--GTCTTGCACTCTAG-----C--T--aagttttgtcctcgatctgcaaccaaagatgagcgatcatgtatagttt
gi|17 : ATCGGACCAAAA--C-ACATTGGG--AAT-----TC---C-CAAA-T--ATA----CG-AT-T---AG---TT-G-C-----TTT----TTG-----------T----TC-ATTC-CAATGAAAATTGGTGT-C-TCTAAT---CT--C-TTGCACG----CTAGCTGTTTgtaaacacgtgatcgagcagttgttttataggttgtagtagccgatttcgatgtgttcacaattcatacaataaacgatctgatattttcagtcactgcggtgatttggcttcccaccgttacagttaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|4 : ttattaaGAAACAAACAGG-AGGTTAGGTAAAT-----TG---C-CAAA-TTGAT-----------T---A----TC-AGT-----TTT----ATG-----------G----TCTT--C-TAATGAAAAC--ACAT-C-TTTAAT-CACT--T-TCT---A----CTAG--GTCTTGCACCCTGA-----CTGT--A--A--ACAAAGATG--aa
gi|7 : actaGGACCAAAAA-C-AAATTGGA--AAT-----TC---T-TATA-TTGATGCAATTG-GT-T---A----TC-A-T-----TTT----TTG-----------G----TCAT--C-CAATGAAAACTTGCAT-C-CCTA------------------------AG--GTCTTGCACTCTAG-----CTGT--A--A--ACTAAAATG--AT--Cgctgcctcagtatcgttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|11 : attAAAAT--AAATTGGG--GAT-----TT---TTCAAA-CTGATAC---TA-GT-T---C----CT---T-----CTC----AT-----------------------C-CAATGAAAACTTGAGT-C-TCTAA-TCACA--T-TCG---A----CTAG--GTCTTGTACTCAAG-----TTGT--A--A--ACAAAGATG--caccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|23 : cAAAATCGAAATTGGA--AAT-----TT---T-TAAA-TTGAT-----------T---C----TT-A-T-----ATT----TTG-----------G----TCAT--T-CAATGAAAATTTGCAT-C-TCTgttgaccggatatcgtttcgcgtgctttagg
gi|6 : AAA-TTGATA----CT-AG-T---G----GC-A-T-----TTT-----TG-----------GGGG-TAGA--T-CAATGGAAAAGTGCATTC-TCTGTTTCACT--T-TCG---A----CTAA--GCCTTGCATTCTAG-----C--T--
gi|3 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacatttgatttttccaattatcagttttaaaataATA----TGCAT-T---A----TT-ATT-----TTT----TTG-----------G----TC-A--T-CGATGAAAACTTGTGT-C-TCTAATT-ACT--T-TCT---ACAAGCAAG--GTCTTGTACTCTAGGCTCTC--T--A--ACCATAAAATTG--TT--TTgta
gi|12 : -A-T-----TTT-----TG-----------AC---TCAT--C-CAATGAAAACTTGCAT-T-TCTAATT-GCT--CTTCA---C----CTAG--GTCTTGCACTTTAG-----CTGT--A--A--ACAAAGATGATTT--CCTggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|19 : ttttaacatcggatcgaaaacaGT-CGTCCAATG-ACT--T-TCG---A----TTAG--GTCTTGC--TCGAA-----C--TGTA--A--ACAAAGATG--GTCGCTTAAGTATtgtagatagtggccacttttgatgtttaaatt
gi|20 : aattgaatttcatgtttg-TCTAACT-ACT--T-TTG---A----CAAG--GTCTTGCACTTCAG-----C--T--ATGA--ACAAAACTG--TT--cgtttcgttttattcaatcat
gi|12 : CTTTAGCTGTAAACAAAGATG--ATTTCCTTGTAGA---TAGTGGCCACTTTTGATG-TTTAAATTtccgtggatagtgtatttccaaggtatttaagtca
gi|2 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcacctaggtcttgcaTTTATAGGTTGTAGTAGCCGATTTCGATGT--------GTTCA--CAATTCATACAATAAA---CGATCTG-ATATTTTCAGTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): AACATTGGACCAAAAAAAAGGAGTTTCCTATTTTGTCGTCAAGGAGGAAGACGGTATCTCATCCAACTTTCGCCAAGTCTTCGCACTTCTAGGCTGGTAAACACGTGATCGAGCAGTTGTTTTATAGTTGTAGTAGCCGATTTCGATGTGTTCACAATTCATACAATAAACGATCTGATATTTTCAGTCACTGCGGTGATT
Unaligned ( gi|13 ): TATCATCACTTTGGACTAAGATTTGCAGTATAACTGTGTACATAAATGATCGAATAGAATCCTTAATCCAATTTCGATGTTTCAAATCATTTAATCATACAATAAAACAATTATTAACATTCTCAAGGTCAATGTGGCGA
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 2222 222222222222222 111111111111111111111111 111 11111 11111 22 111111 1 444444444 11 222222222 111 1 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 2 77777 2 111111111111111111111111 111 55 222 2 99999 2 00000 2 2 2 2 2 88 4 999999 6 7777777 0 7 3 666666666 44 55 0 4 1 111111111 666 3 2 0 777 444 0 33 2 2 0 0 2 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . . ..... . ........................ ... .. ... . ..... . ..... . . . . . .. . ...... . ....... . . . ......... .. .. . . . ......... ... . . . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 1 88888 1 444444444444444444444444 111 55 888 2 55555 7 66666 0 7 7 7 9 88 0 222222 7 0000000 8 3 3 000000000 33 88 2 2 0 666666666 222 2 5 0 555 000 0 88 5 5 2 8 5 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G----TCG-TCCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCAC-TCTA-G-CT-GTAA-ACAAAGATG--TT--CCTAAGTATCGNNNNGCTTTAGCTGTAAACAAA-GAT-G--A----TTTNTTTGTAGGTTGTAGTAGCCGATTTCGATGTTTTAAATCGTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G----TCG-NCCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCAC-TCTA-G-C--GTAA-ACAAAGATG--TT--CTTAAGTATNNNNNNNCTTTAGCTGTAAACAAA-GAT-G--A----TTTCCTTGTAGGTTGTAGTGGCCGNTTTCGATGTTTTAAATTGTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G----TCG-ACCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCAC-TCTA-A-C---TAATACAAAGATG--TT--CTTAA-TATTTGAAGGCTGTAACTG-AAACAAA-GAT-GTCG----TTTATTCGTAGGCTTTAGATGCCGGTTACGATGTTTTAAATTGTTCAGTCAATT-ATACAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G----TGA-TACA--ATAAGTACTCGCGT-
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C----TCA-TCCA--ATGAAAACTTGAGT-CTCTAA-TCA-CA-TTCGA----CTAGGTCTT-GTAC-TCAA-GTT--GTAA-ACAAAGATG--aagttttgtcctcgatctgcaaccaaagatgagcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC---TCA-TCCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCAC-TTTA-G-CT-GTAA-ACAAAGATGATTT--CCTgttgaccggatatcgtttcgcgtgctttagg
gi|12 : ttttaacatcggatcgaaaacaaCTTTAGCTGTAAACAAA-GAT-G--A----TTTCCTTGTAG---ATAGTGGCCACTTTTGATG-TTTAAATTtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcacctaggtcttgcaCCAATTTCGATGTTTCAAATCATTTA---A--TCATACAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGA
gi|14 : tatcatcactttggactaagatttgcagtataactgtgtacataaatgatcgaatagaatccttaatTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G----TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCAC-TATA-
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T----TCATTCCA--ATGAAAATTGGTGT-CTCTAATCCattggctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG----TCG-TTCA--GTGAACATTTGCGT-CTTTAATttgcacgctagctgtttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T----TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCAC-GCTA-G-C--
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----GTAGTTCG-ATCA--AAGAAAGCtgtttaa
gi|19 : catT-----------T-TG----G----TCG-TCCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--C-TCGA-A-CT-GTAA-ACAAAGATG--GTCGCTTAAGTATCGTTTCGTTTTA
gi|2 : aattgaatttcatgTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G----TCG-TCAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCAC-TCTA-G-CT-GTAA-ACAttcaatcat
gi|2 : CTCTAGCTGTAAACACGTGATCG--AGCAGTTGTTTTATAGGTTGTAGTAGCCGATTTCGATGT--------GTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTTcgtgatcgagcagttgttttataggttgtagtagccgatttcgatgtgttcacaattcatacaataaacgatctgatattttcagtcactgcggtgatttggcttcccaccgttacagttaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|20 : tccaacattggaccaaaaataaaggagttcctatttttgtcgtcaaggaggaagactggtatctcatcactttcgccaaggtcttgcaTCTAACT-A-CT-TTTGA----CAAGGTCTT-GCAC-TTCA-G-CT-ATGA-ACAAAACTG--TT--aaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G----TCT-TGCA--ATTAAAtccgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G----TCA-TTCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G----TC--ATCG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTAC-TCTA-G-
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G----TCT-TCTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCAC-CCTG-A-CT-GTAA-ACAAAGATGGCTG--CCTCAGTATgctctctaaccataaaattgttttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|5 : actagaaacaaacaggaggTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT----------------C-A-T-----T---------------------------------CA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCAT-TCCA-A-CT-GTAG-ACAcgttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGG--TAG-ATCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCAT-TCTA-G-CT-GTAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G----TCA-TCCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCAC-TCTA-G-CT-GTAA-ACTAAAATG--AT--C
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G----TCG-TCAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG-CTGGTAA-ACAcaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|8 : TTATAG-TTGTAGTAGCCGATTTCGATGT--------GTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTcgtgatcgagcagttgttttatagttgtagtagccgatttcgatgtgttcacaattcatacaataaacgatctgatattttcagtcactgcggtgatt
gi|9 : aacattggaccaaaaaaaaggagtttcctattttgtcgtcaaggaggaagacggtatctcatccaactttcgccaagtcttcgcacttctaggctggtaaacacgtgatcgagcagttgttGATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T----TCA-TCCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCAC-GCTA-G-C--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 2222 222222222222222 2222222222222222 2222222222222 7777777777777777777777777777777777777777 22222 222222222 111 1 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 7777777 2 99999999999 2 6666666 1 44 55 333 2 5555555555555555 1 0 2 2 2 333 2 77 3 5555555555555 3333333333333333333333333333333333333333 77777 1 444444444 666 3 2 0 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . ....... . ........... . ....... . .. .. ... . ................ . . . . . ... . .. . ............. ........................................ ..... . ......... ... . . . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 8888888 1 55555555555 0 1111111 3 22 55 333 2 5555555555555555 5 5 2 2 2 999 2 33 3 2222222222222 4444444444444444444444444444444444444444 55555 2 555555555 222 2 5 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCAC-TCTA-G---CT-GTAA--ACAAAGAT-G--TT--CCTAAGTATCG----NN-NGCTTTAGCTGTAAACAAAGATG--GTTTAT--TTGTAGGCTNTAGTAGCCGATTTCGATGTTTTAAATCGTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCAC-TCTA-G---CT-GTAA--ACAAAGAT-G--TT--CCTAAGTATCG----NNNNGCTTTAGCTGTAAACAAAGATG--ATTTNT--TTGTAGGTTGTAGTAGCCGATTTCGATGTTTTAAATCGTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G--TCGA-CCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCAC-TCTA-A---C---TAAT-ACAAAGAT-G--TT--CTTAA-TATTT----GAAGGCTGTAACTG-AAACAAAGATGTCGTTTAT--TCGTAGGCTTTAGATGCCGGTTACGATGTTTTAAATTGTTCAGTCAATT-ATACAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G--TGAT-ACA--ATAAGTACTCGCG--------------------------TAAGTTTT-GTCC-TCGA-T---CT-GCAA--CCAAAGAT-G--
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C--TCAT-CCA--ATGAAAACTTGAGT-CTCTAAT-CA-CA-TTCGA----CTAGGTCTT-GTAC-TCAA-G---TT-GTAA--ACAAAGATGG--TTGACCGGA-TATCGTTTCGCGTGCTTTAGagcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC-TCAT-CCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCAC-TTTA-G---CT-GTAA--ACAAAGAT-GATTT--CCTg
gi|12 : ttttaacatcggatcgaaaacaa--CCTAGGTCTTG----CA---CTTTAGCTGTAAACAAAGATG--ATTTCC--TTGTAG---ATAGTGGCCACTTTTGATG-TTTAAATtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcaTCA-CT-TTGGA----CTAAGATTT-GCAG-TATA-A---CT-GTGT--ACATAAAT-G--AT--Ct
gi|13 : tatcaCCAATTTCGATGTTTCAAATCATTTA---A--TCATACAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggactaagatttgcagtataactgtgtacataaatgatcgaatagaatccttaatTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G--TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCAC-TATA-A---TT-G
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAAT---------------------CCTT-GCAC-GCTA-G---CT-GTgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG--TCGT-TCA--GTGAACATTTGCGT-CTTTAATttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCAC-GCTA-G---CT-GT
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----G--TAGT-TCG--ATCAAAttaa
gi|19 : catT-----------T-TG----G--TCGT-CCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--C-TCGA-A---CT-GTAA--ACAAAGAT-G--GTCGCTTAAGTATCG----TTTCGTTTTAgaaagc
gi|2 : aattgaatttcatgTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCAC-TCTA-G---CT-GT------AAACAC-G--T--------G-ATCG----A---GC---AGTTGT------------------T--TTATAGGTTGTAGTAGCCGATTTCGATGT--------GTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTTttcaatcat
gi|20 : TCTAACT-A-CT-TTTGA----CAAGGTCTT-GCAC-TTCA-G---CT-ATGA--ACAAAACT-G--TT--TCaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G--TCAT-TCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G--TCAT--CG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTAC-TCTA-GGCTCT-CTAACCATAAAATT-G--TT--
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G--TCTT-CTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCAC-CCTG-A---CT-GTAA--ACAAAGAT-GGCTG--CCTCAGTATCG----TTTTGttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|5 : actagaaacaaacaggaggTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT-----------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCAT-TCCA-A---CT-GTAG--ACAtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGGTAGA-TCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCAT-TCTA-G---CT-GTAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G--TCAT-CCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCAC-TCTA-G---CT-GTAA--ACTAAAAT-G--AT--CC
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG---CTGGTAA--AC----AC-G--T--------G-ATCG-------AGC---AGTTGT--------------TTTATAGTTGTA-------GTAGCCGATTTCGATGT--------GTTCA--CAATTCATACAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T--TCAT-CCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCAC-GCTA-G---CT-GT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 222222222222222 2222222222222222 00000000000000000000000000000000000000000000000000000000000000000000 11 55555555 111 111 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 7777777 2 99999999999 2 6666666 1 44 55 333 2 5555555555555555 1 0 2 2 666 2 77 0 3 33333333333333333333333333333333333333333333333333333333333333333333 1 11 3 0 44444444 444 0 3 444 8 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . ....... . ........... . ....... . .. .. ... . ................ . . . . ... . .. . . .................................................................... . .. . . ........ ... . . ... . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 8888888 1 55555555555 0 1111111 3 22 55 333 2 5555555555555555 5 5 2 2 111 2 33 5 3 66666666666666666666666666666666666666666666666666666666666666666666 0 00 8 8 22222222 222 8 2 000 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGAT-G--TT--CC---TAA----GTA-TCG-NN-GCTTTAGCTGTAAACAAAGATG--GTT-ATTTATAGG--CTTTAGTAGCCGATTTCGATGTTT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGAT-G--TT--CC---TAA----GTA-TCG-NNNGCTTTAGCTGTAAACAAAGATG--GTTTATTTGTAGG--CTNTAGTAGCCGATTTCGATGTTTTAAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G--TCGA-CCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCACT-CTAA---C---TAAT-ACAAAGAT-G--TT--CT---TAA-----TATTTG-AAGGCTGTAACTG-AAACAAAGATGTCGTTTATTCGTAGG--CTTTAGATGCCGGTTACGATGTTTTAAATTGTTCAGTCAATT-ATA---CAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G--TGAT-ACA--ATAAGTACTCGCG--------------------------TAAGTTTT-GTCCT-CGAT---CTG-CAA--CCAAAGAT-G--
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C--TCAT-CCA--ATGAAAACTTGAGT-CTCTAAT-CA-CA-TTCGA----CTAGGTCTT-GTACT-CAAG---TTG-TAA--ACAAAGATGG--TTGACC---GGATATCGTT-TCG-CGTGCTTTAGagcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC-TCAT-CCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCACT-TTAG---CTG-TAA--ACAAAGAT-GATTT--CCTTGTAG----ATA-GTG-GCCACTTTTGATGTg
gi|13 : ttttaacatcggatcgaaaacaaTCA-CT-TTGGA----CTAAGATTT-GCAGT-ATAA---CTG-TGT--ACATAAAT-G--AT--Cttaaatt
gi|13 : tatcaTAACTGTGTACATAAATG--ATCGA---ATAGAATCCTTAAT--CCAATTTCGATGTTTCAAATCATTTA---A--TCATA---CAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggactaagatttgcagtaTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G--TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCACT-ATAA---TTG-
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAAT---------------------CCTT-GCACG-CTAG---CTG-Tgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG--TCGT-TCA--GTGAACATTTGCGT-CTTTAATttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCACG-CTAG---CTG-T
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----G--TAGT-TCG--ATCAAAttaa
gi|19 : catT-----------T-TG----G--TCGT-CCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--CT-CGAA---CTG-TAA--ACAAAGAT-G--GTCGCT---TAA----GTA-TCGTTTCGTTTTAgaaagc
gi|2 : aattgaatttcatgTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCACT-CTAG---CTG-TAA--AC----AC-G--T---------------G-A-TCG-A--GC---AGTTGT------------------TTTATAGG--TTGTAGTAGCCGATTTCGATGT--------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTTttcaatcat
gi|20 : TCTAACT-A-CT-TTTGA----CAAGGTCTT-GCACT-TCAG---CTA-TGA--ACAAAACT-G--TT--TC---aaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G--TCAT-TCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G--TCAT--CG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTACT-CTAGGCTCTC-TAACCATAAAATT-G--TT--
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G--TCTT-CTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCACC-CTGA---CTG-TAA--ACAAAGAT-GGCTG--CC---TCA----GTA-TCG-ttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|4 : actagaaacaaacaggaggC---TAG----GTC-TTG-CA--CCCTGACTGTAAACAAAGATG--GCT---------G--CCTCAGTA-TCG-TTTTG-TGT------TCACTCA--TAATTTAAAAGTCAAT-AAttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|5 : actagaaacaaacaggaggttaggtaaattgccaaattgattatcagttttatggtcttctaatgaaaacacatctttaatcactttctaTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT-----------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCATT-CCAA---CTG-TAG--ACAcattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGGTAGA-TCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCATT-CTAG---CTG-TAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G--TCAT-CCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCACT-CTAG---CTG-TAA--ACTAAAAT-G--AT--CC---
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG--CTGGTAA--AC----AC-G--T---------------G-A-TCG-A--GC---AGTTGT------------------TTTATAG---TTGTAGTAGCCGATTTCGATGT--------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T--TCAT-CCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCACG-CTAG---CTG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 2222 222222222222222 2222222222222222 66666666666666666666666666666666666666666666666666666666666666666666 33333333 111 111 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 7777777 2 99999999999 2 6666666 1 44 55 333 2 5555555555555555 1 0 2 2 666 2 77 1 3 22222222222222222222222222222222222222222222222222222222222222222222 88 5 6 66666666 444 0 3 444 8 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . ....... . ........... . ....... . .. .. ... . ................ . . . . ... . .. . . .................................................................... .. . . ........ ... . . ... . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 8888888 1 55555555555 0 1111111 3 22 55 333 2 5555555555555555 5 5 2 2 111 2 33 3 3 22222222222222222222222222222222222222222222222222222222222222222222 55 7 7 44444444 222 8 2 000 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGAT-G--TT--CCTAAGTATC--G------NNGCTNTAGCTGTAAACAAAGATG--G-TT-TTTATAGGCTT-TAGTAGCCGATTTCGATG-TTT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGAT-G--TT--CCTAAGTATC--G------NNGCTTTAGCTGTAAACAAAGATG--G-TTATTTATAGGCTT-TAGTAGCCGATTTCGATG-TTT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G--TCGA-CCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCACT-CTAA---C---TAAT-ACAAAGAT-G--TT--CTTAA-TATTTGA------AGGCTGTAACTG-AAACAAAGATGTCGTTTATTCGTAGGCTT-TAGATGCCGGTTACGATGTTTT-AAATTGTTCAGTCAATT-ATA---CAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G--TGAT-ACA--ATAAGTACTCGCG--------------------------TAAGTTTT-GTCCT-CGAT---CTG-CAA--CCAAAGAT-G--
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C--TCAT-CCA--ATGAAAACTTGAGT-CTCTAAT-CA-CA-TTCGA----CTAGGTCTT-GTACT-CAAG---TTG-TAA--ACAAAGATGG--TTGACCGGA-TATC--GTTTCGCGTGCTTTAGagcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC-TCAT-CCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCACT-TTAG---CTG-TAA--ACAAAGAT-GATTT--CCTg
gi|12 : ttttaacatcggatcgaaaacaa--CCTAGGTCTT--G------CA-CTTTAGCTGTAAACAAAGATG--ATTTCCTTGTAGA----TAGTGGCCACTTTTGATG-TTT-AAATtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcaTCA-CT-TTGGA----CTAAGATTT-GCAGT-ATAA---CTG-TGT--ACATAAAT-G--AT--Ct
gi|13 : tatcaCTAAGATTT--G------CAG-TATAACTGTGTACATAAATG--A-TCGAATAGAATCCT-TAAT--CCAATTTCGATG-TTTCAAATCATTTA---A--TCATA---CAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggaTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G--TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCACT-ATAA---TTG-
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAAT---------------------CCTT-GCACG-CTAG---CTG-Tgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG--TCGT-TCA--GTGAACATTTGCGT-CTTTAATttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCACG-CTAG---CTG-T
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----G--TAGT-TCG--ATCAAAttaa
gi|19 : catT-----------T-TG----G--TCGT-CCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--CT-CGAA---CTG-TAA--ACAAAGAT-G--GTCGCTTAAGTATC--GTT----TCGTTTTAgaaagc
gi|2 : aattgaatttcatgTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCACT-CTAG---CTG-TAA--ACA----C-G--T--------G-ATC--G------A-GC---AGTTGT------------------TTTATAGGTTG-TAGTAGCCGATTTCGATG-T--------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTTttcaatcat
gi|20 : TCTAACT-A-CT-TTTGA----CAAGGTCTT-GCACT-TCAG---CTA-TGA--ACAAAACT-G--TT--TCaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G--TCAT-TCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G--TCAT--CG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTACT-CTAGGCTCTC-TAACCATAAAATT-G--TT--
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G--TCTT-CTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCACC-CTGA---CTG-TAA--ACAAAGAT-GGCTG--CCTCAGTATC--G------ttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|4 : actagaaacaaacaggaggCTAGGTCTT--G------CA-CCCTGACTGTAAACAAAGATG--G-CT--------GCCT-CAGTA-TCG-TTTTG-TG-T------TCACTCA--TAATTTAAAAGTCAAT-AAttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|5 : actagaaacaaacaggaggttaggtaaattgccaaattgattatcagttttatggtcttctaatgaaaacacatctttaatcactttctaTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT-----------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCATT-CCAA---CTG-TAG--ACAcattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGGTAGA-TCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCATT-CTAG---CTG-TAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G--TCAT-CCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCACT-CTAG---CTG-TAA--ACTAAAAT-G--AT--CC
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG--CTGGTAA--ACA----C-G--T--------G-ATC--G------A-GC---AGTTGT------------------TTTATAG--TTGTAGTAGCCGATTTCGATG-T--------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T--TCAT-CCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCACG-CTAG---CTG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 2222 222222222222222 2222222222222222 111111 2222222 55555555555555555555555 11 1 3333333 111 111 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 7777777 2 99999999999 2 6666666 1 44 55 333 2 5555555555555555 1 0 2 2 666 2 77 0 666666 0 66 66 9999999 88 1 44444444444444444444444 11 0 1 5 2222222 1 444 0 3 444 8 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . ....... . ........... . ....... . .. .. ... . ................ . . . . ... . .. . ...... . .. .. ....... .. . ....................... .. . . . ....... . ... . . ... . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 8888888 1 55555555555 0 1111111 3 22 55 333 2 5555555555555555 5 5 2 2 111 2 33 5 000000 8 88 99 9999999 77 6 33333333333333333333333 77 6 7 7 0000000 0 222 8 2 000 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTATC--GCAGCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTATC--GNNGCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G--TCGA-CCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCACT-CTAA---C---TAAT-ACAAAGATG--TT--CTTAA-TATTTGAAGGCTGTAACTG-AAACAAAGATGTCGTTTAT--TCGTAGG--CTT-TAGATGCCGGTTACGATGTT-TT-AAATTGTTCAGTCAATT-ATA---CAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G--TGAT-ACA--ATAAGTACTCGCG--------------------------TAAGTTTT-GTCCT-CGAT---CTG-CAA--CCAAAGATG--
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C--TCAT-CCA--ATGAAAACTTGAGT-CTCTAAT-CA-CA-TTCGA----CTAGGTCTT-GTACT-CAAG---TTG-TAA--ACAAAGATG--agcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC-TCAT-CCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCACT-TTAG---CTG-TAA--ACAAAGATGATTT--CCTgttgaccggatatcgtttcgcgtgctttagg
gi|12 : ttttaacatcggatcgaaaacaa--CCTAGGTCTT--GCA-CTTTAGCTGTAAACAAAGATG--ATT--TCCTTGTAGA------TAGTGGCCACTTTTGATG-T-TT-AAATtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcaTCA-CT-TTGGA----CTAAGATTT-GCAGT-ATAA---CTG-TGT--ACATAAATG--AT--Ct
gi|13 : tatcaCTAAGATTT--GCAG-TATAACTGTGTACATAAATG--ATC--G--A-ATAGAATCCT-TAAT--CCAATTTCGATG-T-TTCAAATCATTTA---A--TCATA---CAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggaTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G--TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCACT-ATAA---TTG-
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAAT---------------------CCTT-GCACG-CTAG---CTG-Tgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG--TCGT-TCA--GTGAACATTTGCGT-CTTTAATttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCACG-CTAG---CTG-T
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----G--TAGT-TCG--ATCAAAttaa
gi|19 : catT-----------T-TG----G--TCGT-CCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--CT-CGAA---CTG-TAA--ACAAAGATG--GTCGCTTAAGTATC--Ggaaagc
gi|19 : aattgaatttcatgGCTCGAACTGTAAACAAAGATG--GTC-----------G--CTT-AAGTA-TCG-TTTCGTTT-TATT-CAATCATtttcgttttattcaatcat
gi|2 : aattgaatttcatgtttggtcgtccaatgactttcgattaggtcttTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCACT-CTAG---CTG-TAA--AC----ACG--T--------G-ATC--G-AGC---AGTTGT------------------T--TTATAGG--TTG-TAGTAGCCGATTTCGATG-T---------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
gi|20 : TCTAACT-A-CT-TTTGA----CAAGGTCTT-GCACT-TCAG---CTA-TGA--ACAAAACTG--TT--TCaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G--TCAT-TCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G--TCAT--CG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTACT-CTAGGCTCTC-TAACCATAAAATTG--TT--
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G--TCTT-CTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCACC-CTGA---CTG-TAA--ACAAAGATGGCTG--CCTCAGTATC--Gttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|4 : actagaaacaaacaggaggCTAGGTCTT--GCA-CCCTGACTGTAAACAAAGATG--GCT-----------G--CCT-CAGTA-TCG-TTTTG-TG-T-------TCACTCA--TAATTTAAAAGTCAAT-AAttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|5 : actagaaacaaacaggaggttaggtaaattgccaaattgattatcagttttatggtcttctaatgaaaacacatctttaatcactttctaTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT-----------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCATT-CCAA---CTG-TAG--ACAcattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGGTAGA-TCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCATT-CTAG---CTG-TAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G--TCAT-CCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCACT-CTAG---CTG-TAA--ACTAAAATG--AT--CC
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG--CTGGTAA--AC----ACG--T--------G-ATC--GA-GC---AGTTGT------------------T--TTATAG----TTGTAGTAGCCGATTTCGATG-T---------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T--TCAT-CCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCACG-CTAG---CTG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 2222 222222222222222 2222222222222222 111111 111 22222222 111 55555555555555555555555 11 1 3333333 111 111 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 7777777 2 99999999999 2 6666666 1 44 55 333 2 5555555555555555 1 0 2 2 666 2 77 666666 0 111 22222222 000 1 00000000000000000000000 11 0 1 5 2222222 1 444 0 3 444 8 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . ....... . ........... . ....... . .. .. ... . ................ . . . . ... . .. ...... . ... ........ ... . ....................... .. . . . ....... . ... . . ... . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 8888888 1 55555555555 0 1111111 3 22 55 333 2 5555555555555555 5 5 2 2 111 2 33 000000 8 888 44444444 111 6 99999999999999999999999 77 6 7 7 0000000 0 222 8 2 000 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTA-TCGCA-GCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTA-TCGCA-GCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G--TCGA-CCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCACT-CTAA---C---TAAT-ACAAAGATG--TT--CTTAA-TATTTGAAGGCTGTAACTG-AAACAAAGATGTCGTTTAT--TCGTAGG--CTT-TAGATGCCGGTTACGATGTT-TT-AAATTGTTCAGTCAATT-ATA---CAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G--TGAT-ACA--ATAAGTACTCGCG--------------------------TAAGTTTT-GTCCT-CGAT---CTG-CAA--CCAAAGATG--
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C--TCAT-CCA--ATGAAAACTTGAGT-CTCTAAT-CA-CA-TTCGA----CTAGGTCTT-GTACT-CAAG---TTG-TAA--ACAAAGATG--agcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC-TCAT-CCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCACT-TTAG---CTG-TAA--ACAAAGATGATTT--CCTgttgaccggatatcgtttcgcgtgctttagg
gi|12 : ttttaacatcggatcgaaaacaa--CCTAGGTC-TTGCA--CTTTAGCTGTAAACAAAGATG--ATT--TCCTTGTAGA------TAGTGGCCACTTTTGATG-T-TT-AAATtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcaTCA-CT-TTGGA----CTAAGATTT-GCAGT-ATAA---CTG-TGT--ACATAAATG--AT--Ct
gi|13 : tatcaCTAAGAT-TTGCA-G-TATAACTGTGTACATAAATG--ATC--G--A-ATAGAATCCT-TAAT--CCAATTTCGATG-T-TTCAAATCATTTA---A--TCATA---CAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggaTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G--TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCACT-ATAA---TTG-
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAAT---------------------CCTT-GCACG-CTAG---CTG-Tgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG--TCGT-TCA--GTGAACATTTGCGT-CTTTAATttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCACG-CTAG---CTG-T
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----G--TAGT-TCG--ATCAAAttaa
gi|19 : catT-----------T-TG----G--TCGT-CCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--CT-CGAA---CTG-TAA--ACAAAGATG--GTCGCTTAAGTA-TCGgaaagc
gi|19 : aattgaatttcatg-GCTCGAACTGTAAACAAAGATG--GTC-----------G--CTT-AAGTA-TCG-TTTCGTTT-TATT-CAATCATtttcgttttattcaatcat
gi|2 : aattgaatttcatgtttggtcgtccaatgactttcgattaggtcttTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCACT-CTAG---CTG-TAA--AC----ACG--T--------G-A-TCG-A-GC---AGTTG----------------T--T--TTATAGG--TTG-TAGTAGCCGATTTCGATG-T---------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
gi|20 : TCTAACT-A-CT-TTTGA----CAAGGTCTT-GCACT-TCAG---CTA-TGA--ACAAAACTG--TT--TCaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G--TCAT-TCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G--TCAT--CG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTACT-CTAGGCTCTC-TAACCATAAAATTG--TT--
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G--TCTT-CTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCACC-CTGA---CTG-TAA--ACAAAGATGGCTG--CCTCAGTA-TCGttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|4 : actagaaacaaacaggaggCTAGGTC-TTGCA--CCCTGACTGTAAACAAAGATG--GCT-----------G--CCT-CAGTA-TCG-TTTTG-TG-T-------TCACTCA--TAATTTAAAAGTCAAT-AAttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|5 : actagaaacaaacaggaggttaggtaaattgccaaattgattatcagttttatggtcttctaatgaaaacacatctttaatcactttctaTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT-----------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCATT-CCAA---CTG-TAG--ACAcattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGGTAGA-TCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCATT-CTAG---CTG-TAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G--TCAT-CCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCACT-CTAG---CTG-TAA--ACTAAAATG--AT--CC
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG--CTGGTAA--ACA----CG--T--------G-A-TCG-A-GC---AGTTGT------------------T--TTATAG----TTGTAGTAGCCGATTTCGATG-T---------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T--TCAT-CCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCACG-CTAG---CTG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 2222 222222222222222 2222222222222222 111111 111 22222222 111 55555555555555555555555 11 1 3333333 111 111 111 111 1 11 22222
lowQualScore : 33 1 66 3333 1 33 55555 0 2 2 1 555555555555555 2 7777777 2 99999999999 2 6666666 1 44 55 333 2 5555555555555555 1 0 2 2 666 2 77 666666 0 111 22222222 000 1 00000000000000000000000 11 0 1 5 2222222 1 444 0 3 444 8 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. .... . .. ..... . . . . ............... . ....... . ........... . ....... . .. .. ... . ................ . . . . ... . .. ...... . ... ........ ... . ....................... .. . . . ....... . ... . . ... . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 6666 3 11 66666 9 2 2 8 999999999999999 1 8888888 1 55555555555 0 1111111 3 22 55 333 2 5555555555555555 5 5 2 2 111 2 33 000000 8 888 44444444 111 6 99999999999999999999999 77 6 7 7 0000000 0 222 8 2 000 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTA-TCGCA-GCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTA-TCGCA-GCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-T----G-ATT-A-TT-A-T-----T-TT-----------A-TG----G--TCGA-CCA--ATGAAAACTCGCGT-CTCTAATTCA-CT-CTCGA----CTAGGTTTT-GCACT-CTAA---C---TAAT-ACAAAGATG--TT--CTTAA-TATTTGAAGGCTGTAACTG-AAACAAAGATGTCGTTTAT--TCGTAGG--CTT-TAGATGCCGGTTACGATGTT-TT-AAATTGTTCAGTCAATT-ATA---CAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAATG-AAA-TGGG--GAT-----TCC-AAAA--TGAAA-C----G-ATT-A-TG-A-T-----TATT-----------T-TA----G--TGAT-ACA--ATAAGTACTCGCG--------------------------TAAGTTTT-GTCCT-CGAT---CTG-CAA--CCAAAGATG--
gi|11 : tttgaggtaaatatcataagtataaatAAAAT--AAATTGGG--GAT-----TTTTCAAA-CTGATA-C-------------T-A-G-----T-TC-----------C-TT----C--TCAT-CCA--ATGAAAACTTGAGT-CTCTAAT-CA-CA-TTCGA----CTAGGTCTT-GTACT-CAAG---TTG-TAA--ACAAAGATG--agcgatcatgtatagttt
gi|12 : c-----T-TT-----------T-TG----AC-TCAT-CCA--ATGAAAACTTGCAT-TTCTAATT-G-CTCTTCAC----CTAGGTCTT-GCACT-TTAG---CTG-TAA--ACAAAGATGATTT--CCTgttgaccggatatcgtttcgcgtgctttagg
gi|12 : ttttaacatcggatcgaaaacaa--CCTAGGTC-TTGCA--CTTTAGCTGTAAACAAAGATG--ATT--TCCTTGTAGA------TAGTGGCCACTTTTGATG-T-TT-AAATtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcaTCA-CT-TTGGA----CTAAGATTT-GCAGT-ATAA---CTG-TGT--ACATAAATG--AT--Ct
gi|13 : tatcaCTAAGAT-TTGCA-G-TATAACTGTGTACATAAATG--ATC--G--A-ATAGAATCCT-TAAT--CCAATTTCGATG-T-TTCAAATCATTTA---A--TCATA---CAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggaTGATTTTTTTCAA--ATTGAACC-AAAATT-ATATTGAG--AAA-----T---CAGA-C------C----A-ATT-A-TTCA-T-----T-TT-----------T-TG----G--TCA---CA--ATGAAAA-GTGCAT-CTCTATTTC--CT-TTCAG----CTA--CCTT-GCACT-ATAA---TTG-
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAAT---------------------CCTT-GCACG-CTAG---CTG-Tgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAAG--AAATTGAG--AAT-----TTC-CAAA-TTGATG-C----G-ATT-AGTT-A-T-----T-TTTAAAATAATCAT-TGTTTTG--TCGT-TCA--GTGAACATTTGCGT-CTTTAATttaaa
gi|17 : -ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-T--ATA-C----G-ATT-AGTT-G-C-----T-TT-----------T-TG----T--TCATTCCA--ATGAAAATTGGTGT-CTCTAATC--------------------TCTT-GCACG-CTAG---CTG-T
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAACAAAAATTT-GAATTGGG--AATTTTAATTT-CAAA-TTGATATC----ATATTGA-TT-A-TACAAGT-TT-----------T-TG----G--TAGT-TCG--ATCAAAttaa
gi|19 : catT-----------T-TG----G--TCGT-CCA--ATGA----------------------CT-TTCGA----TTAGGTCTT-G--CT-CGAA---CTG-TAA--ACAAAGATG--GTCGCTTAAGTA-TCGgaaagc
gi|19 : aattgaatttcatg-GCTCGAACTGTAAACAAAGATG--GTC-----------G--CTT-AAGTA-TCG-TTTCGTTT-TATT-CAATCATtttcgttttattcaatcat
gi|2 : aattgaatttcatgtttggtcgtccaatgactttcgattaggtcttTCCAAC-ATTGGACCAAAAAT--AAA---GG--AGT-----TCC---------------------------T-A-T-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-CTC--AT-CA-CT-TTCGC----CAAGGTCTT-GCACT-CTAG---CTG-TAA--AC----ACG--T--------G-A-TCG-A-GC---AGTTG----------------T--T--TTATAGG--TTG-TAGTAGCCGATTTCGATG-T---------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
gi|20 : TCTAACT-A-CT-TTTGA----CAAGGTCTT-GCACT-TCAG---CTA-TGA--ACAAAACTG--TT--TCaaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG--T-GAATTTTG--AAT-----TTC-CAAAATTGACA-C----G-ATTGG-TT-G-C-----T-TT-----------T-TG----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAATCGAAATTGGA--AAT-----TTT-TAAA-TTGAT-----------T-C-TT-A-T-----A-TT-----------T-TG----G--TCAT-TCA--ATGAAAATTTGCAT-CTCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAAT--AAACTGGT--AGT-----TCC-CAAA-TTGATA-T----G-ATT-GCTT-A-T-----
gi|3 : attATA-T----GCATT-A-TT-ATT-----T-TT-----------T-TG----G--TCAT--CG--ATGAAAACTTGTGT-CTCTAATT-A-CT-TTCTACAAGCAAGGTCTT-GTACT-CTAGGCTCTC-TAACCATAAAATTG--TT--
gi|4 : TTAGGTAAAT-----TGC-CAAA-TTGAT-----------T-A-TC-A-G-----T-TT-----------TATG----G--TCTT-CTA--ATGAAAAC--ACAT-CTTTAAT-CA-CT-TTCTA----CTAGGTCTT-GCACC-CTGA---CTG-TAA--ACAAAGATGGCTG--CCTCAGTA-TCGttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|4 : actagaaacaaacaggaggCTAGGTC-TTGCA--CCCTGACTGTAAACAAAGATG--GCT-----------G--CCT-CAGTA-TCG-TTTTG-TG-T-------TCACTCA--TAATTTAAAAGTCAAT-AAttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|5 : actagaaacaaacaggaggttaggtaaattgccaaattgattatcagttttatggtcttctaatgaaaacacatctttaatcactttctaTTTATT-TTTCTAAT-ATCGGACGAAAAAT--AAATTGAG--AAT-----TCC-AAAA-TTGAT-----------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-CTTCAAT-CA-CT-TTCGA----CTGGGTCTT-GCATT-CCAA---CTG-TAG--ACAcattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAAT-------------A-----------AAA-TTGATA-C----T-AGT-G-GC-A-T-----T-TT-----------T-GG----GGGTAGA-TCA--ATGGAAAAGTGCATTCTCTGTTTCA-CT-TTCGA----CTAAGCCTT-GCATT-CTAG---CTG-TAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA-C-AAATTGGA--AAT-----TCT-TATA-TTGATG-CAATTG-GTT-A-TC-A-T-----T-TT-----------T-TG----G--TCAT-CCA--ATGAAAACTTGCAT-CCCTA--------------------AGGTCTT-GCACT-CTAG---CTG-TAA--ACTAAAATG--AT--CC
gi|8 : AAC-ATTGGACCAAAAA---AAA---GG--AGT-----TTC-C-------------------------T-A-T-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-ATCTCATCCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG--CTGGTAA--ACA----CG--T--------G-A-TCG-A-GC---AGTTGT------------------T--TTATAG----TTGTAGTAGCCGATTTCGATG-T---------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA--C-ACATTGGG--AAT-----TCC-CAAA-TTTATA-C----G-ATT-AGTT-G-CTA---T-TT-----------T-TG----T--TCAT-CCA--ATGAAAATTGGTGT-CTCTAA---------TCG-----------CTT-GCACG-CTAG---CTG-T
blockSeqs : TT C TT ATCG T TA TTTAA T A T GCAATTGGTTA C TACAAG A TAAAATAATCA A TTTTG A TC GG CTC T TACTTTCTACAAG T C T GCT G CC ATTT TC CACTTT TAA A ATCGAATAGAATCCT GG C A . TTCAAA C C C AGT A . TAT . AG C A C C CCCAC
blockSeqs : T T C ATG T . . . . T ATCATATTGA . CTA . . . GGG A TC GG CTT . TGCTCTTCAC T . . G . . GTCG AT CAGTAT TGT T ATTTCCTTGTAGA AG A A . ATTCAA C T C . . . C . . C C T
blockSeqs : A C C ATT T . . . . T ACGATTAG . TT . . . AC A A . CTT . TCACTTTGGA T . . . . . GCTG TA CACCCT TAA A TTTTATAGGTTG AG A T . TTAAA C C T . . . C . . C C T
blockSeqs : T C C TTT T . . . . T GCGATTAG . T . . . G A C . TTG . TCACTTTCGA T . . . . . AT TA AGC TAA A TTTATAGTTG A A A . . . . C . .
blockSeqs : T C C AT T . . . . T ACGATTAG . G . . . C A C . TTT . CCAACTTTCG T . . . . . TT TC AGC T . GTCGCTT A . A . . .
blockSeqs : T C G AG T . . . . T ACGATTGG . T . . . G G T . TTG . CACATTCGA T . . . . . TT A . . GCTGCCT . . . . .
blockSeqs : T C G AT T . . . . T ATGATTGC . C . . . T A T . CTG . TCCTTTCAG A . . . . . AT A
blockSeqs : T C T AT T . . . . T ATGCATTA . T . . . T G C . TTT . CACTTTCGC A . . . . . T
blockSeqs : A . C AT C . . . . T ACGATTAG . C . . . G G C . CTT . TACTTTTGA A . . . . . T
blockSeqs : . . C AT T . . . . T ACGATTA . T . . . G G G . TTT . CACTTTCTA T . . . . .
blockSeqs : . . AC T . . . . T ACTAGTG . C . . . G T T . AGT . CACTTTCGA T . . . . .
blockSeqs : . C T . . . . T CAATTA . T . . . G A C . CTT . CTTTCGA T . . . . .
blockSeqs : C T . . . . . AC . T . . . G A T . TTG . TCG C . . . .
blockSeqs : T . . . . . . TC . G . . . G T T . GT . C . . . . .
blockSeqs : A . . . . . . TA . T . . . G A C . C . . . . . . .
blockSeqs : C . . . . . . . . T . . . G G C . C . . . . . . .
blockSeqs : . . . . . . . . T . . . G A C . . . . . . . . .
blockSeqs : . . . . . . T G . .
blockSeqs : . . . A . .
blockSeqCons : AT** ACGATTAG******* CACTTTCGA******* ** TN* CACTNT** TAA NTCGTAGCCT************* TTAA*** C**
originalCons : TTGATT-TTTCCAAC-ATCGGACCAAAAATC-AAATTGGG--AAT-----TCC-CAAA-TTGATA-C----G-ATT-A-TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATTCA-CT-TTCGA----CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTA-TCGCA-GCTNTAGCTGTAAACAAAGATG--GTT--T--TTATAGG--CTT-TAGTAGCCGATTTCGATG-T-TT-AAATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
finalCons : TTGATT-TTTCCAAC-ATCGGACCAAAAAT--AAATTGGG--AAT-----TCC-CAAA-TTGATACGATTAG-------TT-A-T-----T-TT-----------T-TG----G--TCGT-CCA--ATGAAAACTTGCGT-CTCTAATCACTTTCGA-------CTAGGTCTT-GCACT-CTAG---CTG-TAA--ACAAAGATG--TT--CCTAAGTN-TCGCACTNT--AGCTGTAAACAAAGATGNTCGTAGCCT-------------TAGTAGCCGATTTCGATG-TTTAA---TCGTTCAC--AATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT
Alignments
lowQualScore : 111111 111111111111111111111111 1111111111111111111111 111111111111111 111111 22222222 555555555555555555555555 11 1 333333 111 111 111 111 1 11 22222
lowQualScore : 33 1 66 000000 88888888 33 55555 0 2 2 1 333333333333333333333333 2 2222222222222222222222 1 4 55 0 0 1 2 2 2 2 000000000000000 1 0 2 2 2 333 2 77 333333 44 77 11111111 88 1 444444444444444444444444 5 11 0 999 333333 1 444 0 3 444 8 777 444 0 33 2 2 0 4 1 66666
lowQualScore : .. . .. ...... ........ .. ..... . . . . ........................ . ...................... . . .. . . . . . . . ............... . . . . . ... . .. ...... .. .. ........ .. . ........................ . .. . ... ...... . ... . . ... . ... ... . .. . . . . . .....
lowQualScore : 88 8 77 999999 77777777 11 66666 9 2 2 8 555555555555555555555555 1 6666666666666666666666 9 2 88 1 7 4 2 1 1 1 333333333333333 5 5 2 2 2 999 2 33 000000 22 44 44444444 77 6 999999999999999999999999 7 77 6 666 777777 0 222 8 2 000 0 555 000 0 88 5 5 2 2 0 00000
consensus : TTGATT-TTTCCAAC-ATCGGACCAAAAA--T--AAA-------TTGGG--AAT-----TCC-CAAA-TTGATA-CG-ATTAGT--T---AT-----T-TT-----------TT-G----G--TCGT-CCA--ATGAAAACTTGCGT-C-TCTAA-T-C--ACT-TTCGA----CTAGGTCTT-GCAC-TCTA-G---CT-GTAA--ACAAAGATG--TT--C--CTAAGTNTCGCG--CTNTAGCTGTAAACAAAGATG-------NTCG--TA-G---CCT-T-AGTAGCCGATTTCG--ATGTTT--AATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
Reference ( family-439 ) : TTGATT-TTTCCAAC-ATCGGACCAAAAA--T--AAA-------TTGGG--AAT-----TCC-CAAA-TTGATA-CG-ATTAGT--T---AT-----T-TT-----------TT-G----G--TCGT-CCA--ATGAAAACTTGCGT-C-TCTAA-T-C--ACT-TTCGA----CTAGGTCTT-GCAC-TCTA-G---CT-GTAA--ACAAAGATG--TT--C--CTAAGTNTCGCA--CTNTAGCTGTAAACAAAGATG-------NTCG--TA-G---CCT-T-AGTAGCCGATTTCG--ATGTTT--AATCGTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTCTCA--GTCACTGCGGCGATTTGGNTTCCCACCGCTACAGTT
gi|1 : TTGATT-TTTCGAAC-ACCGAACCAAAAA--TC-AAA-------TTGGG--AAT-----TCC-CAAA-TTGATA-TG-ATTA-T--T---AT-----T-TT-----------AT-G----G--TCGA-CCA--ATGAAAACTCGCGT-C-TCTAATT-C--ACT-CTCGA----CTAGGTTTT-GCAC-TCTA-A---C---TAAT-ACAAAGATG--TT--C--TTAATATTTGAAGGCTGTAACTG-AAACAAAGATGTCGTTTATTCG--TAGG---CTT-T-AGATGCCGGTTACG--ATGTTTTAAATTGTTCAGTCAATT-ATA---CAAT-CAAGTCCGGA--GTGTATATTCTTA--AT----------ATTTGGGTT---A-CGCTACAGTT
gi|10 : TT-TTTCCAAC-CTTAAACCAAAAA--T--GAA-------ATGGG--GAT-----TCC-AAAA--TGAAA-CG-ATTA-T--G---AT-----TATT-----------TT-A----G--TGAT-ACA--ATAAGTACTCGCG-----------------------------TAAGTTTT-GTCC-TCGA-T---CT-GCAA--CCAAAGATG--
gi|11 : tttgaggtaaatatcataagtataaatAAAA--T--AAA-------TTGGG--GAT-----TTTTCAAA-CTGATA-C----TAGT--T---CC-----T-TC-----------T-----------CAT-CCA--ATGAAAACTTGAGT-C-TCTAA-T-C--ACA-TTCGA----CTAGGTCTT-GTAC-TCAA-G---TT-GTAA--ACAAAGATG--agcgatcatgtatagttt
gi|12 : c-----T-TT-----------TT-G----AC-TCAT-CCA--ATGAAAACTTGCAT-T-TCTAA-T-T--GCTCTTCAC----CTAGGTCTT-GCAC-TTTA-G---CT-GTAA--ACAAAGATGATTT--C--CTgttgaccggatatcgtttcgcgtgctttagg
gi|12 : ttttaacatcggatcgaaaacaa--C--CTAGGTCTTGCA--CTTTAGCTGTAAACAAAGATGATTTC--CTTG--TA-G---A---T-AGTGGCCACTTTTG--ATGTTT--AAtgtagatagtggccacttttgatgtttaaatt
gi|13 : ttttaacatcggatcgaaaacaatttttgactcatccaatgaaaacttgcatttctaattgctcttcaA-T-C--ACT-TTGGA----CTAAGATTT-GCAG-TATA-A---CT-GTGT--ACATAAATG--AT--C--att
gi|13 : tatc--CTAAGATTTGCA--GTATAACTGTGTACATAAATG-------ATCGAATA-GAATCCT-T-AAT--CCAATTTCG--ATGTTTCAAATCATTTA---A--TCATA---CAATAAAA---CAATTATTA-ACATTCTCAAGGTCAATGTGGCGAgaatagaatccttaatccaatttcgatgtttcaaatcatttaatcatacaataaaacaattattaacattctcaaggtcaatgtggcga
gi|14 : tatcatcactttggaTGATTTTTTTCAA--ATTGAACCAAAAT--T--ATA-------TTGAG--AAA-----T---CAGA-C------CA-ATTATT--C---AT-----T-TT-----------TT-G----G--TCA---CA--ATGAAAA-GTGCAT-C-TCTAT-T-T--CCT-TTCAG----CTA--CCTT-GCAC-TATA-A---TT-G
gi|15 : catgTGATT-ATT--AA--ATCGGACCAAAA---C--ACA-------TTGGG--AAT-----TCC-CAAA-T--ATA-CG-ATTAGT--T---GC-----T-TT-----------TT-G----T--TCATTCCA--ATGAAAATTGGTGT-C-TCTAA-T-C---------------------CTT-GCAC-GCTA-G---CT-GTgctttgtaattagtgaaat
gi|16 : acTGATT-TTTCCAAC-GTCGGACGAAAAA--G--AAA-------TTGAG--AAT-----TTC-CAAA-TTGATG-CG-ATTAGT--T---AT-----T-TTTAAAATAATCATT-GTTTTG--TCGT-TCA--GTGAACATTTGCGT-C-TTTAA-T-ttaaa
gi|17 : -ATCGGACCAAAA---C--ACA-------TTGGG--AAT-----TCC-CAAA-T--ATA-CG-ATTAGT--T---GC-----T-TT-----------TT-G----T--TCATTCCA--ATGAAAATTGGTGT-C-TCTAA-T-C--------------------TCTT-GCAC-GCTA-G---CT-GT
gi|18 : ttattaaTTGATT-TCTCCAGC-ATTGAA-CAAAAATTT--GAA-------TTGGG--AATTTTAATTT-CAAA-TTGATATCATATTGAT--T---ATACAAGT-TT-----------TT-G----G--TAGT-TCG--ATCAAAttaa
gi|19 : catTTG-GT-CGTCCAA-T-G--ACT-TTCGA----TTAGGTCTT-G--C-TCGA-A---CT-GTAA--ACAAAGATG--GTCGC--TTAAGTATCGgaaagc
gi|19 : aattgaatttcatgtCAATGACT--TT--CGATTAGGTCTTGC----TCGAACTGTAAACAAAGATG-------GTCG----------CT-TAAGTA-TCG-TTTCGTTTTATTC--AATCATtttcgttttattcaatcat
gi|2 : aattgaatttcatgtttggtcgtcTCCAAC-ATTGGACCAAAAA--T--AAA----------GG--AGT-----TCC------------------------T---AT-----T-TT-----------T-------G--TCGT-CAAGGAGGAAGACTGGTAT-C-TC--A-T-C--ACT-TTCGC----CAAGGTCTT-GCAC-TCTA-G---CT-GTAA--AC----ACG--T----------G-ATCGAG--C---AGTTGT------------------TTTA--TA-G---GTTGT-AGTAGCCGATTTCG--ATGT--------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTTGGCTTCCCACCGTTACAGTT
gi|20 : -TCTAA-C-T--ACT-TTTGA----CAAGGTCTT-GCAC-TTCA-G---CT-ATGA--ACAAAACTG--TT--T--Caaatcatcgtactgacctaaaaatgtcaataaaatgtaaat
gi|21 : TTGATT-----CAAG-ATTGGACCAAAG---T--GAA-------TTTTG--AAT-----TTC-CAAAATTGACA-CG-ATTGGT--T---GC-----T-TT-----------TT-G----G--TCTT-GCA--ATTAAAcgtggatagtgtatttccaaggtatttaagtca
gi|23 : aAAAA--TCGAAA-------TTGGA--AAT-----TTT-TAAA-TTGATT-C-------T--T---AT-----A-TT-----------TT-G----G--TCAT-TCA--ATGAAAATTTGCAT-C-TCT
gi|24 : ACT-TTTCAAAG-ACTGGACCCAAAA--T--AAA-------CTGGT--AGT-----TCC-CAAA-TTGATA-TG-ATTGCT--T---AT-----
gi|3 : attATA-TGCATTA-T--T---AT-----T-TT-----------TTTG----G--TCAT-C-G--ATGAAAACTTGTGT-C-TCTAA-T-T--ACT-TTCTACAAGCAAGGTCTT-GTAC-TCTA-GGCTCT-CTAACCATAAAATTG--TT--
gi|4 : ACTAGAAA--C--AAACAGGAGGTTAGGTAAAT-----TGC-CAAA-TTGAT---T-ATCAGT--T------------TT-----------AT-G----G--TCTT-CTA--ATGAAAAC--ACAT-C-TTTAA-T-C--ACT-TTCTA----CTAGGTCTT-GCAC-CCTG-A---CT-GTAA--ACAAAGATGGCTG--C--CTCAGTATCGttggaagctctacttaccatttttgatgtaatcatgtaataaaacaaatattcacattttcttgtaagtacattgtacaatcgtctgggctcagtaaaaaaggtaaaatattaaaatgacctaaaaaatgtcactaaattatgtaatat
gi|4 : --CTAGGTCTTGCA--CCCTGACTGTAAACAAAGATG----------G--CT-G---CCT-C-AGTA-TCG-TTTTG---TGT------TCACTCA--TAATTTAAAAGTCAAT-AAttttgtgttcactcataatttaaaagtcaataacattctttcactacataacaatattcactcttagcacacatctagcaag
gi|5 : actagaaacaaacaggaggttaggtaaattgccaaattgattatcagttttatggtcttctaatgaaaacacatctttaatcactttctaTTTATT-TTTCTAAT-ATCGGACGAAAAA--T--AAA-------TTGAG--AAT-----TCC-AAAA-TTGAT---------------------------------------------------CAT-TCA--ATGAAACTTTGCAT-C-TTCAA-T-C--ACT-TTCGA----CTGGGTCTT-GCAT-TCCA-A---CT-GTAG--ACAcattctttcactacataacaatattcactcttagcacacatctagcaag
gi|6 : ctccgaactttctgaatggctgaactcgccacaaattaattagaaaaggtaaattgtgggacatcaatgtgtcttccaattgaatagaacatTTGATT-TTTCCAATTATCAGTTTTAAAA--T--AAA-----------------------------A-TTGATA-C----TAGTGGC---AT-----T-TT-----------TG-G----GGGTAGA-TCA--ATGGAAAAGTGCATTC-TCTGT-TTC--ACT-TTCGA----CTAAGCCTT-GCAT-TCTA-G---CT-GTAtgaatggccgaca
gi|7 : acttttttatgtgactgaataatcttcatctaataaactaaagggaaaaagaacgtcaattcatcacaatatgaatttaaggaagtataacat-ATTGGACCAAAAA--C--AAA-------TTGGA--AAT-----TCT-TATA-TTGATG-CA-ATTGGT--TATCAT-----T-TT-----------TT-G----G--TCAT-CCA--ATGAAAACTTGCAT-C-CCTA----------------------AGGTCTT-GCAC-TCTA-G---CT-GTAA--ACTAAAATG--AT--C--C
gi|8 : AAC-ATTGGACCAAAAA-----AAA----------GG--AGT-----TTC-C----------------------T---AT-----T-TT-------------------G--TCGT-CAAGGAGGAAGAC--G-GT-A-TCTCA-T-CCAACT-TTCG-----CCAAGTCTTCGCACTTCTAGG---CTGGTAA--ACA------------C--GTGA---TCGAG--C---AGTTGT------------------TTTA--TA-G---TTG-T-AGTAGCCGATTTCG--ATGT--------GTTCA--CAATTCATA---CAAT-AAA---CGAT--CTG-ATATTTTCA--GTCACTGCGGTGATTaccacattgtgttgtttggtaataatgggttgataagttatatcatataataacaaaattcttgacatttcttaatcaatacaatgat
gi|9 : GATT-ATT--AAC-ATCGGACCAAAA---C--ACA-------TTGGG--AAT-----TCC-CAAA-TTTATA-CG-ATTAGT--T---GCTA---T-TT-----------TT-G----T--TCAT-CCA--ATGAAAATTGGTGT-C-TCTAA-T-C--G------------------CTT-GCAC-GCTA-G---CT-GT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTATTCCGAGATCTTTGATTGGCTGGGTTAAATAGAAAAGAGAATAGAGCGTCATATTCCACGTGCTCTCCATATCT