lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111
lowQualScore : 444 6666666666 1 11 22222222 1 2222222 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 333 2222 333333333333333333333333333333333333333333333333333333333333333333 222 1 11 44444444444444444 444444444 111 1 11111111111111111111111111111111111111111111111111
lowQualScore : 9 555 3333333333 6 8 5 6 11 88888888 4 5 0 99 8888888 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 666 3333 66 6 2 3 777777777777777777777777777777777777777777777777777777777777777777 3 3 333 3 7 99 11111111111111111 7 11 6 222222222 000 0 1 1 66666666666666666666666666666666666666666666666666 1 5 1 1 5 1
lowQualScore : . ... .......... . . . . .. ........ . . . .. ....... . .............................................................................................................................................................................................................................................................................................................................................. ... .... .. . . . .................................................................. . . ... . . .. ................. . .. . ......... ... . . . .................................................. . . . . . .
lowQualScore : 0 555 5555555555 0 8 0 0 00 44444444 0 0 7 22 3333333 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 000 5555 55 0 5 0 333333333333333333333333333333333333333333333333333333333333333333 0 0 333 7 0 22 00000000000000000 8 66 0 222222222 777 1 7 7 33333333333333333333333333333333333333333333333333 7 7 9 7 7 4
consensus : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACCT--AAGCGTC----GAANGTAGATTA--GTTATTTCGT-------CTGATGTTAAAA--------TG-------GAA------------T--------------GTTGTTTT-----GCG---CCAAAGTA--TTGA-TGTTTTGATTCG--T-----T---------TT------------T-------------CC--CCAACAATTG-TTTTGAGCAG-CACTTG-C-TACCGACC--GGTAC-----TAC---CAAATATAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATCCCTTTTATNNAGTCTGNACGGGTTGCATATAACGTCGATACCTTTCTCTTCAAGTAACTTCTTCA-TGTTGTTGAAATCGTTCTCTCTTTACTCGCCTTTNAG---TTNTAGTTTACA-NACACAACAT-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-TA----ACA--TTTATTCACTAGCCGCGTGTTCGAATCAATT-A-----CTTGCGAT-C---------ATCATG-CTG-CT-AT--AG--AAATTTAGCA-TAAATTGCCAAA-GACAAA
Reference ( gi|1 ) : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATCC--AAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAG--------AG-------GAA------------T--------------G------------ACA---ACAA--TA--ATGA-TGCTTTGA------------T---------TT------------T-------------CC--CCAACAATTG-TATTGTACAA-CACTTA-C-AACCTACC--GACAC-----TAT---CAAATATAATAAAAAACATCATTTCAA-GCTCTAG--CTTCGTTTTATACAATATGGTGCACATTTGCT-GTGA--AACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTTTGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTTGAAATTGTTCTCGTTTCACTTTCCTTTTAA---TTGTAGATTACA-AACACAACAC-----C-----T-----TCACAAGAGGTCCCATACCTGTCT-------ACA--TTTATTCACTAGCTGCATGTTCGAACCAATT-C-----CTTGCGAT-T---------ATCATG-CTG-CTCATG-AGTTGAATTTAGCA-TAAATTGCTAAA-GGCAAA
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACCT--AAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAA--------TG-------GAA------------T--------------GTTGTTTTCTGT-GCG---CCAAAGTA--TTGA-TGTTTTGATTCGGATTCAGTT---------TT------------T-------------CC--CCAACAATTG-TTTTGAGCAG-CACTTG-C-TACCGACC--GGTACTAAAATAC---CAAATATA
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACCT--AAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAT---------G-------GAA------------T--------------GTTGTTTTTCTGTGCG---CCAA--TAGTATGA-TGTTTTGA------------TGTCATTCAGTT------------T-------------CC--CCAACAATTG-TTTTGAGCAG-CACTTG-CTTACCGACC--GGTAC-----T
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACCT--AAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAA--------TG-------GAATGTTGTTTTCTGT--------------G------------GCG---CCAAAGTA--TTGA-TGTTTTGATTCGATTCAGT-T---------TT------------T-------------CC--CCAACAATTGTTTTTGAGCAG-CACTTG-C-TACCGACC--GGTAC-----T------AAATA
gi|4 : TGATTTTTGGAGTACCGAAGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAA
gi|2 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcacCC--AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTTTTCTGTA------------T--------------GGTA---------ACC---ACAG--TA--TTTAGTGCTTTGA------------T---------TT------------TGATTAAGGTTTTTCCAACCAACAATCT-T-TTGTGCAAGCATTTAAC-AACCTACCTTGATAA-----AATACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGC--A--------A------TCTCTTCATGT-----------TGTTA--GAAATCGTTCTCTCTTTA-TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACAT-----CTGTATT-----TCACAAAAAGCCCCTTATTTGTTT-------ACACTTTTATTCACCAGCCGCATATTGAAATTAATT-A-------TGTGATAT---------A-CATA-CTGACGCATG-AA-TAAATTTAGTATTAAATAGCCAAAGGGCAAA
gi|13 : ga----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAG--------TG-------GAA------------TATTGCTTTCAGTATG------------ACACGTACAG--TA--ATGA-GGCTTTGA------------T---------TTGGAATAAGGGTTT-------------CC--CCAACATATG-CTGTGTGCAG-CATTTA-C-TACCTA
gi|3 : aCCTTTTATACAGTCTACACGGGTTGCATATAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTTGAAGTTataaata
gi|10 : tgAGTAACTTTTTCATTGTTGTTAAAA--------------CTCTCTTTTGAG---TTGTAGTTTCCA---CACCACAC-----C-----T-----CCTCGAGAGGCCCTA-AATTGTTA-------ATA--GTTATTCACTTACCGCGCGTTGGAA---------------TGCG---------------TGTG-C-G-CTAA--------AATTTAGCA-TAAATTGCTGAA-GACAAAtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatacttagcataaattgctaaagacaagtaataatggaaagtctagtaatcc
gi|12 : ---TTCTAGTTTACA-AACACAACATACATAC-----T-----TCACGGGAGGGCCCATACTTGTTT-------ACG--CTTTTTCACTTGCCGCATGTTCGAATCAATT-A-----ATTGTCGT-C---------ATCATGACTA-C------------ACTTAGAA-TAAAATTCCAAA-GACAtaataatggaaagtttagt
gi|11 : TTACG-TACACAACAT-----C-----TGTACTTTATACGAGGCCCTATACTTGCTTGTA----ACA--TTTATTCACTAGCCGCATGTTCAAATCAATT-A-----CTTGTGAT-A---------ATCATG-CTG-TTCATGCA--TAAATTT--CC-TGA--TGCCAAA-GACAAAtatgataatggaaagtttagtata
gi|15 : catTTACA-TACACAACAC-----C-----T-----TCACGAGAGGCCTCAT-CTTTTTTTTAAAAAAGA--GTTGTTCGCTAACTGCGAGTTaaatagtaaagtctattaatt
gi|6 : gtA--TTTATTCATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGAT-CGGCATTAAAATCACA--TG-CT-ATT-AGTAAAAGTTAGCA-TAAAATACCAAA-GGTAagcgtgtgtaataaacttaaacataaa
gi|5 : CAC-AGCTGCATGTTCGAATCAGT--------CTTGTGAT-C---------ATCATG-C----------AGT-GCATTTTGCA-TAAATTGCCAAA-GACAAAtacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|3 : tactgtaatatttaaaaACTTAGCA-TAAATTGCTAAA-GACAAaacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT
Alignments
lowQualScore : 111 1111 22 111 1111 2222222 888888888888888888888888 9999999999999999999999 11 3333333333 2 555555 1 2 11 77777777 1 11 222222 33333333 1 333333 4444 44444444 3 1 111 44444444 222 33333333333333333 33333333 222222222 2222222222 6666666666666666666
lowQualScore : 777 7777 22 0 000 2222 1 77 4444444 1 000000000000000000000000 6 6 7 6 6 7777777777777777777777 99 6 4 6 6 6 11 1111111111 3 0 4 777777 5 0 88 22222222 5 88 666666 44444444 4 5 2 666666 2222 55 6 22 11 6 7 22222222 999 2 4 0 0 888 33333333 1 333 1 55 6 11111111111111111 1 00000000 5 0 333333333 0 9999999999 5 5555555555555555555 0 0 5 0 5
lowQualScore : ... .... .. . ... .... . .. ....... . ........................ . . . . . ...................... .. . . . . . .. .......... . . . ...... . . .. ........ . .. ...... ........ . . . ...... .... .. . .. .. . . ........ ... . . . . ... ........ . ... . .. . ................. . ........ . . ......... . .......... . ................... . . . . .
lowQualScore : 555 0000 00 6 888 1111 0 99 3333333 7 333333333333333333333333 7 7 8 7 7 0000000000000000000000 22 7 0 7 7 7 00 8888888888 2 0 0 555555 5 0 00 55555555 0 55 000000 55555555 0 5 5 000000 5555 55 7 00 77 7 3 00000000 777 5 2 0 0 555 77777777 0 333 0 00 7 00000000000000000 7 00000000 0 1 444444444 1 4444444444 7 8888888888888888888 2 4 0 5 0
consensus : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC-G-TC---G---T----T---TTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC-A---TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATAT--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTCAGTGTTGTT-GAAATCGTTCTCTCTTCA-TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGATC---------AT-CATGC--TG-C-T-A-TG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
Reference ( family-4372 ) : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC--------G---T----T---TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC-----TACC-AAATATAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCATT-GT---TTTAA----ACTGTAGTTCAATATCCCTTTTATNNAGTCTGNACGGGTTGCATATAACGTCGATACCTTTCTCTTCAAGTAACTTCTTCA-TGTTGTT-GAAATCGTTCTCTCTTTACTCGCCTTTNA---GTTNTAGTTTACANA-CACAACAT-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGATC---------AT-CATGC--TG-C-T-A-T--AG--AAATTTAGCA-TAAATTGCCAAA-GACAAA
gi|1 : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATC--CAAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAGAGGAATG-------------------AC---------AA-CAA---TAATGA-TGCTTTGAT-T-----------------------TTCC--CCAACAATTG-TATTGTACA-ACACTTA-C-AACCTACC--GACAC-----TATC-AAATATAATAAAAAACATCATTTCAA-GCTCTAGCTT--CGTTTTATACAATATGGTGCACATTTGCTG-TGAA--ACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTTTGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTT-GAAATTGTTCTCGTTTCACTTTCCTTTTA---ATTGTAGATTACAAA-CACAACAC-----C-----T-----TCACAAGAGGTCCCATACCTGTCT--------ACATTTATT-CACTAGCTGCATGTTCGAACCAAT------TCCTTGCGATT---------AT-CATGC--TG-C-TCA-TG-AGTTGAATTTAGCA-TAAATTGCTAAA-GGCAAA
gi|10 : AGTAACTTTTTCATTGTTGTT-AAAA-----CTCTCT---------TTTGA---GTTGTAGTTTCC--A-CACCACAC-----C-----T-----CCTCGAGAGGCCCTA-AATTG--T-T-----AATAGTTATT-CACTTACCGCGCGTTGGAA---------------TGCG---------------TGTGC---G-C-T-A--------AAATTTAGCA-TAAATTGCTGAA-GACAAA
gi|11 : TTTACGTA-CACAACAT-----C-----TGTACTTTATACGAGGCCCTATACTTGCTTGT-----AACATTTATT-CACTAGCCGCATGTTCAAATCAAT------TACTTGTGATA---------AT-CATGC--TG-T-TCA-TGCAT--AAATTT--CC-TGA--TGCCAAA-GACAAAtaataatggaaagtttagt
gi|12 : caTTCTAGTTTACAAA-CACAACATACATAC-----T-----TCACGGGAGGGCCCATACTTGTTT--------ACGCTTTTT-CACTTGCCGCATGTTCGAATCAAT------TAATTGTCGTC---------AT-CATG----A-C-T-A-C--------ACTTAGAA-TAAAATTCCAAA-GACAaaatagtaaagtctattaatt
gi|13 : ----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAGTGGAATATTGCTT-----TCAGTATGAC---------ACGTAC-AGTAATGA-GGCTTTGAT-TT--------GGAATAAGGG---TTTCC--CCAACATATG-CTGTGTGCA-GCATTTA-C-TACCtatgataatggaaagtttagtata
gi|15 : aGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCTCAT-CTTTTTT-TTAAAAAAGAGTTGTT-CGCTAACTGCGAGTTtaataaata
gi|2 : GACC---AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTT-----T-------TCTGTATGGTAAC-CAC-AGTATTTAGTGCTTTGAT-TTTGATTAAGG---T----T---TTTCCAACCAACAATC--TTTTGTGCAAGCATTTAAC-AACCTACCTTGATAAAA---TACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCATT-GT---TTTAA----ACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGCA-A---------------TCTCT-------------TCA-TGTTGTTAGAAATCGTTCTCTCTTTA-TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACAT-----CTGTATT-----TCACAAAAAGCCCCTTATTTGTTT-A-----CACTTTTATT-CACCAGCCGCATATTGAAATTAAT------TA--TGTGAT----------ATACATAC--TGACGC-A-TGAAT--AAATTTAGTATTAAATAGCCAAAGGGCAAAagcgtgtgtaataaacttaaacataaa
gi|3 : CCTTTTATACAGTCTACACGGGTTGCATATAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTT-GAAGT--TTCT
gi|3 : tg-T--AA--ATACTTAGCA-TAAATTGCTAAA-GACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatacttagcataaattgctaaagacaagtaataatggaaagtctagtaatcc
gi|4 : tgccttttatacagtctacacgggttgcatataacgtcgatacctttctcttcaagtaacttctttagttttgttgaagtttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA----AGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAAgtaataatggaaagtctagtaatcc
gi|5 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcactgatttttggagtaccg-T-----AATATTTAAAACAC-AGCTGCATGTTCGAATCAGT--------CTTGTGATC---------AT-CATGCAGTG-C--------------ATTTTGCA-TAAATTGCCAAA-GACAAA
gi|6 : tactgATTTATT-CATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGATCGGCATTAAAAT-CACA---TG-C-T-ATT--AGTAAAAGTTAGCA-TAAAATACCAAA-aacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTCTG-T-------GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TCGGATTCA-G---T----T---TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTACTAAAATACC-AAATATAgtatacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----TCTGTG--GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TCGATTCA--G---T----T---TTTCC--CCAACAATTGTTTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC-----T----AAATA
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTT-AAATGGAATGTTGTTTTTCTGT-------GC---------GC-CAATAGTA-TGA-TGTTTTGATGTC--------A---T----TCAGTTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-CTTACCGACC--GGTAC-----T
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT
Alignments
lowQualScore : 111 1111 33 111 1111 2222222 888888888888888888888888 7777777777777777777777 11 333333 1 1 333333 1 1 11 33333333 1 11 2222 33333333 1 1 222 2222 6666666666 1 1 111 444444444 222 33333333333333333 33333333 222222222 33333333333333 55555555555555555
lowQualScore : 777 7777 66 0 000 2222 1 77 4444444 1 000000000000000000000000 6 6 7 6 9999999999999999999999 99 6 1 6 6 6 11 777777 3 7 5 1 000000 5 5 88 66666666 5 88 4444 1 44444444 1 5 1 5 111 3333 22 6 7 1111111111 2 2 0 4 0 0 888 333333333 333 0 55 6 11111111111111111 1 00000000 5 0 333333333 0 11111111111111 55555555555555555 0 0 5 0 5
lowQualScore : ... .... .. . ... .... . .. ....... . ........................ . . . . ...................... .. . . . . . .. ...... . . . . ...... . . .. ........ . .. .... . ........ . . . . ... .... .. . . .......... . . . . . . ... ......... ... . .. . ................. . ........ . . ......... . .............. ................. . . . . .
lowQualScore : 555 0000 00 6 888 1111 0 99 3333333 7 333333333333333333333333 7 7 8 7 0000000000000000000000 22 7 0 7 7 7 00 777777 3 3 5 0 000000 5 5 00 00000000 0 55 5555 0 55555555 0 5 0 5 000 5555 00 7 3 3333333333 0 5 8 2 2 0 555 333333333 333 2 33 7 00000000000000000 7 00000000 0 1 444444444 1 99999999999999 00000000000000000 2 4 0 5 0
consensus : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGATTC--G---TCA--GT----T---TTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
Reference ( family-4372 ) : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGATTC--G---TC---GT----T---TTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTCAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
gi|1 : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATC--CAAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAGAGGAATG-------------------AC---------AA-CAA---TAATGA-TGCTTTGATT-----------------------TTCC--CCAACAATTG-TATTGTACA-ACACTTA-C-AACCTACC--GACAC------TATC-AAATATAATAAAAAACATCATTTCAA-GCTCTAGCTT--CGTTTTATACAATATGGTGCACATTTGCTG-TGAA--ACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTT--TGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTT-GAAATTGTTCTCGTTTCACTTT-CCTTTTA---ATTGTAGATTACAAA-CACAACAC-----C-----T-----TCACAAGAGGTCCCATACCTGTCT--------ACATTTATT-CACTAGCTGCATGTTCGAACCAAT------TCCTTGCGAT---TAT--------CATGC--TG-C-TCATG-AGTTGAATTTAGCA-TAAATTGCTAAA-GGCAAA
gi|10 : AGTAACTTTTTCATTGTTGTT-AAAA-----CTCTCT----------TTTGA---GTTGTAGTTTCC--A-CACCACAC-----C-----T-----CCTCGAGAGGCCCTA-AATTG--T-T-----AATAGTTATT-CACTTACCGCGCGTTGGAA---------------TGCG----------------TGTGC---G-C-T-----A---AAATTTAGCA-TAAATTGCTGAA-GACAAA
gi|11 : TTTACGTA-CACAACAT-----C-----TGTACTTTATACGAGGCCCTATACTTGCTTGT-----AACATTTATT-CACTAGCCGCATGTTCAAATCAAT------TACTTGTGAT---AAT--------CATGC--TG-T-TCATGCAT--AAATTT--CC-TGA--TGCCAAA-GACAAAtaataatggaaagtttagt
gi|12 : caTTCTAGTTTACAAA-CACAACATACATAC-----T-----TCACGGGAGGGCCCATACTTGTTT--------ACGCTTTTT-CACTTGCCGCATGTTCGAATCAAT------TAATTGTCGT---CAT--------CATG----A-C-T-AC--------ACTTAGAA-TAAAATTCCAAA-GACAaaatagtaaagtctattaatt
gi|13 : ----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAGTGGAATATTGCTT-----TCAGTATGAC---------ACGTAC-AGTAATGA-GGCTTTGATTT--G---GA---ATAAGGG---TTTCC--CCAACATATG-CTGTGTGCA-GCATTTA-C-TACCtatgataatggaaagtttagtata
gi|15 : aGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCTCAT-CTTTTTT-TTAAAAAAGAGTTGTT-CGCTAACTGCGAGTTtaataaata
gi|2 : GACC---AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTT-----T-------TCTGTATGGTAAC-CAC-AGTATTTAGTGCTTTGATTTTGA---TTAAGGT----T---TTTCCAACCAACAATC--TTTTGTGCAAGCATTTAAC-AACCTACCTTGATAA----AATACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGCA-A-----------------TCTCTTC--------------ATGTTGTTAGAAATCGTTCTCTCTTTA--TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACAT-----CTGTATT-----TCACAAAAAGCCCCTTATTTGTTT-A-----CACTTTTATT-CACCAGCCGCATATTGAAATTAAT------TA--TGTGAT----ATA-------CATAC--TGACGC-ATG-AAT-AAATTTAGTATTAAATAGCCAAAGGGCAAAagcgtgtgtaataaacttaaacataaa
gi|3 : CCTTTTATACAGTCTACACGGGTTGCATA--TAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTT-GAAGT--TTCT
gi|3 : tgTA-A---ATACTTAGCA-TAAATTGCTAAA-GACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatacttagcataaattgctaaagacaagtaataatggaaagtctagtaatcc
gi|4 : tgccttttatacagtctacacgggttgcatataacgtcgatacctttctcttcaagtaacttctttagttttgttgaagtttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA----AGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAAgtaataatggaaagtctagtaatcc
gi|5 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcactgatttttggagtaccg-T-----AATATTTAAAACAC-AGCTGCATGTTCGAATCAGT--------CTTGTGAT---CAT--------CATGCAGTG-C-------------ATTTTGCA-TAAATTGCCAAA-GACAAA
gi|6 : tactgATTTATT-CATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGATCGGCATTAAAATCACATGC--TA-T-T-AGT-A---AAAGTTAGCA-TAAAATACCAAA-aacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTCTG-T-------GC---------GC-CAA-AGTATTGA-TGTTTTGATTC--GGATTCA--GT----T---TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTACTAAAA-TACC-AAATATAgtatacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----TCTGTG--GC---------GC-CAA-AGTATTGA-TGTTTTGATTC--GAT-TCA--GT----T---TTTCC--CCAACAATTGTTTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC----
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTT-AAATGGAATGTTGTTTTTCTGT-------GC---------GC-CAATAGTA-TGA-TGTTTTGAT----G---TC---AT----TCAGTTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-CTTACCGACC--GGTAC----taaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT
Alignments
lowQualScore : 111 1111 33 111 1111 2222222 888888888888888888888888 5555555555555555 11 333333 1 1 333333 1 1 11 33333333 1 11 2222 33333333 1 1 222 2222 6666666666 1 1 111 44444444 222 33333333333333333 33333333 222222222 33333333333333 55555555555555555
lowQualScore : 777 7777 66 0 000 2222 1 77 4444444 1 000000000000000000000000 6 6 7 6 0000000000000000 99 6 1 6 6 6 11 777777 3 7 5 1 000000 5 5 88 66666666 5 88 4444 1 44444444 1 5 1 5 111 3333 22 6 7 1111111111 2 2 0 0 0 0 888 44444444 333 0 999 11111111111111111 33333333 5 0 333333333 0 11111111111111 55555555555555555 0 0 5 0 5
lowQualScore : ... .... .. . ... .... . .. ....... . ........................ . . . . ................ .. . . . . . .. ...... . . . . ...... . . .. ........ . .. .... . ........ . . . . ... .... .. . . .......... . . . . . . ... ........ ... . ... ................. ........ . . ......... . .............. ................. . . . . .
lowQualScore : 555 0000 00 6 888 1111 0 99 3333333 7 333333333333333333333333 7 7 8 7 5555555555555555 22 7 0 7 7 7 00 777777 3 3 5 0 000000 5 5 00 00000000 0 55 5555 0 55555555 0 5 0 5 000 5555 00 7 3 3333333333 0 5 8 8 2 0 555 33333333 333 2 555 00000000000000000 44444444 0 1 444444444 1 99999999999999 00000000000000000 2 4 0 5 0
consensus : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC--GG--TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
Reference ( family-4372 ) : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC--G---TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
gi|1 : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATC--CAAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAGAGGAATG-------------------AC---------AA-CAA---TAATGA-TGCTTTGA-----------------TTTTCC--CCAACAATTG-TATTGTACA-ACACTTA-C-AACCTACC--GACAC------TATC-AAATATAATAAAAAACATCATTTCAA-GCTCTAG--CTTCGTTTTATACAATATGGTGCACATTTGCT-GTGA--AACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTT--TGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTT-GAAATTGTTCTCGTTTCACTTT-CCTTTTA---ATTGTAGATTACAAA-CACAACAC-----C-----T-----TCACAAGAGGTCCCATACCTGTCT--------ACATTTATT-CACTAGCTGCATGTTCGAACCAAT------TCCTTGCGAT---TAT--------CATGC--TG-C-TCATG-AGTTGAATTTAGCA-TAAATTGCTAAA-GGCAAA
gi|10 : AGTAACTTTTTCATTGTTGTT-AAAA-----CTCTCTT----------TTGA---GTTGTAGTTTCCA---CACCACAC-----C-----T-----CCTCGAGAGGCCCTA-AATTGTT--------AATAGTTATT-CACTTACCGCGCGTTGGAA---------------TGCG----------------TGTGC---G-C-T-----A---AAATTTAGCA-TAAATTGCTGAA-GACAAA
gi|11 : TTTACGTA-CACAACAT-----C-----TGTACTTTATACGAGGCCCTATACTTGCTTGT-----AACATTTATT-CACTAGCCGCATGTTCAAATCAAT------TACTTGTGAT---AAT--------CATGC--TG-T-TCATGCAT--AAATTT--CC-TGA--TGCCAAA-GACAAAtaataatggaaagtttagt
gi|12 : caTTCTAGTTTACAAA-CACAACATACATAC-----T-----TCACGGGAGGGCCCATACTTGTTT--------ACGCTTTTT-CACTTGCCGCATGTTCGAATCAAT------TAATTGTCGT---CAT--------CATG----A-C-T-AC--------ACTTAGAA-TAAAATTCCAAA-GACAaaatagtaaagtctattaatt
gi|13 : ----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAGTGGAATATTGCTT-----TCAGTATGAC---------ACGTAC-AGTAATGA-GGCTTTGAT-TT--GGAATAA--GGGTTTCC--CCAACATATG-CTGTGTGCA-GCATTTA-C-TACCtatgataatggaaagtttagtata
gi|15 : aGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCTCAT-CTTTTTT-TTAAAAAAGAGTTGTT-CGCTAACTGCGAGTTtaataaata
gi|2 : GACC---AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTT-----T-------TCTGTATGGTAAC-CAC-AGTATTTAGTGCTTTGAT-TTTGA---TTAAGGTTTTTCCAACCAACAATC--TTTTGTGCAAGCATTTAAC-AACCTACCTTGATAA----AATACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGCA-A-----------------TCTCTTC--------------ATGTTGTTAGAAATCGTTCTCTCTTTA--TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACAT-----CTGTATT-----TCACAAAAAGCCCCTTATTTGTTT-A-----CACTTTTATT-CACCAGCCGCATATTGAAATTAAT------TA--TGTGAT----ATA-------CATAC--TGACGC-ATG-AAT-AAATTTAGTATTAAATAGCCAAAGGGCAAAagcgtgtgtaataaacttaaacataaa
gi|3 : CCTTTTATACAGTCTACACGGGTTGCATA--TAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTT-GAAGT--TTCT
gi|3 : tgTA-A---ATACTTAGCA-TAAATTGCTAAA-GACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatacttagcataaattgctaaagacaagtaataatggaaagtctagtaatcc
gi|4 : tgccttttatacagtctacacgggttgcatataacgtcgatacctttctcttcaagtaacttctttagttttgttgaagtttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA----AGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAAgtaataatggaaagtctagtaatcc
gi|5 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcactgatttttggagtaccg-T-----AATATTTAAAACAC-AGCTGCATGTTCGAATCAGT--------CTTGTGAT---CAT--------CATGCAGTG-C-------------ATTTTGCA-TAAATTGCCAAA-GACAAA
gi|6 : tactgATTTATT-CATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGATCGGCATTAAAATCACATGC--TA-T-T-AGT-A---AAAGTTAGCA-TAAAATACCAAA-aacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTCTG-T-------GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC--GGATTCA--GTTTTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTACTAAAA-TACC-AAATATAgtatacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----TCTGTG--GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC--GAT-TCA--GTTTTTCC--CCAACAATTGTTTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC----
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTT-AAATGGAATGTTGTTTTTCTGT-------GC---------GC-CAATAGTA-TGA-TGTTTTGATGTC--AT--TCA--G--TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-CTTACCGACC--GGTAC----taaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT
Alignments
lowQualScore : 111 1111 33 111 1111 2222222 888888888888888888888888 44444444444444 11 333333 1 1 333333 1 1 11 33333333 1 11 2222 33333333 1 1 222 2222 6666666666 1 1 111 44444444 222 33333333333333333 33333333 222222222 33333333333333 55555555555555555
lowQualScore : 777 7777 66 0 000 2222 1 77 4444444 1 000000000000000000000000 6 6 7 6 6 00000000000000 99 6 1 6 6 6 11 777777 3 7 5 1 000000 5 5 88 66666666 5 88 4444 1 44444444 1 5 1 5 111 3333 22 6 7 1111111111 2 2 0 0 0 0 888 44444444 333 0 999 11111111111111111 33333333 5 0 333333333 0 11111111111111 55555555555555555 0 0 5 0 5
lowQualScore : ... .... .. . ... .... . .. ....... . ........................ . . . . . .............. .. . . . . . .. ...... . . . . ...... . . .. ........ . .. .... . ........ . . . . ... .... .. . . .......... . . . . . . ... ........ ... . ... ................. ........ . . ......... . .............. ................. . . . . .
lowQualScore : 555 0000 00 6 888 1111 0 99 3333333 7 333333333333333333333333 7 7 8 7 7 33333333333333 22 7 0 7 7 7 00 777777 3 3 5 0 000000 5 5 00 00000000 0 55 5555 0 55555555 0 5 0 5 000 5555 00 7 3 3333333333 0 5 8 8 2 0 555 33333333 333 2 555 00000000000000000 44444444 0 1 444444444 1 99999999999999 00000000000000000 2 4 0 5 0
consensus : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC-GG--TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
Reference ( family-4372 ) : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC-GG--TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
gi|1 : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATC--CAAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAGAGGAATG-------------------AC---------AA-CAA---TAATGA-TGCTTTGAT-T---------------TTCC--CCAACAATTG-TATTGTACA-ACACTTA-C-AACCTACC--GACAC------TATC-AAATATAATAAAAAACATCATTTCAA-GCTCTAGCTT--CGTTTTATACAATATGGTGCACATTTGCTG-TGAA--ACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTT--TGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTT-GAAATTGTTCTCGTTTCACTTT-CCTTTTA---ATTGTAGATTACAAA-CACAACAC-----C-----T-----TCACAAGAGGTCCCATACCTGTCT--------ACATTTATT-CACTAGCTGCATGTTCGAACCAAT------TCCTTGCGAT---TAT--------CATGC--TG-C-TCATG-AGTTGAATTTAGCA-TAAATTGCTAAA-GGCAAA
gi|10 : AGTAACTTTTTCATTGTTGTT-AAAA-----CTCTCTT----------TTGA---GTTGTAGTTTCCA---CACCACAC-----C-----T-----CCTCGAGAGGCCCTA-AATTGTT--------AATAGTTATT-CACTTACCGCGCGTTGGAA---------------TGCG----------------TGTGC---G-C-T-----A---AAATTTAGCA-TAAATTGCTGAA-GACAAA
gi|11 : TTTACGTA-CACAACAT-----C-----TGTACTTTATACGAGGCCCTATACTTGCTTGT-----AACATTTATT-CACTAGCCGCATGTTCAAATCAAT------TACTTGTGAT---AAT--------CATGC--TG-T-TCATGCAT--AAATTT--CC-TGA--TGCCAAA-GACAAAtaataatggaaagtttagt
gi|12 : caTTCTAGTTTACAAA-CACAACATACATAC-----T-----TCACGGGAGGGCCCATACTTGTTT--------ACGCTTTTT-CACTTGCCGCATGTTCGAATCAAT------TAATTGTCGT---CAT--------CATG----A-C-T-AC--------ACTTAGAA-TAAAATTCCAAA-GACAaaatagtaaagtctattaatt
gi|13 : ----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAGTGGAATATTGCTT-----TCAGTATGAC---------ACGTAC-AGTAATGA-GGCTTTGAT-TT-GGAATAA--GGGTTTCC--CCAACATATG-CTGTGTGCA-GCATTTA-C-TACCtatgataatggaaagtttagtata
gi|15 : aGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCTCAT-CTTTTTT-TTAAAAAAGAGTTGTT-CGCTAACTGCGAGTTtaataaata
gi|2 : GACC---AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTT-----T-------TCTGTATGGTAAC-CAC-AGTATTTAGTGCTTTGAT-TTTGA--TTAAGGTTTTTCCAACCAACAATC--TTTTGTGCAAGCATTTAAC-AACCTACCTTGATAA----AATACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGCA-A-----------------TCTCTTC--------------ATGTTGTTAGAAATCGTTCTCTCTTTA--TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACAT-----CTGTATT-----TCACAAAAAGCCCCTTATTTGTTT-A-----CACTTTTATT-CACCAGCCGCATATTGAAATTAAT------TA--TGTGAT----ATA-------CATAC--TGACGC-ATG-AAT-AAATTTAGTATTAAATAGCCAAAGGGCAAAagcgtgtgtaataaacttaaacataaa
gi|3 : CCTTTTATACAGTCTACACGGGTTGCATA--TAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTT-GAAGT--TTCT
gi|3 : tgTA-A---ATACTTAGCA-TAAATTGCTAAA-GACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatacttagcataaattgctaaagacaagtaataatggaaagtctagtaatcc
gi|4 : tgccttttatacagtctacacgggttgcatataacgtcgatacctttctcttcaagtaacttctttagttttgttgaagtttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA----AGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAAgtaataatggaaagtctagtaatcc
gi|5 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcactgatttttggagtaccg-T-----AATATTTAAAACAC-AGCTGCATGTTCGAATCAGT--------CTTGTGAT---CAT--------CATGCAGTG-C-------------ATTTTGCA-TAAATTGCCAAA-GACAAA
gi|6 : tactgATTTATT-CATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGATCGGCATTAAAATCACATGC--TA-T-T-AGT-A---AAAGTTAGCA-TAAAATACCAAA-aacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTCTG-T-------GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC-GGATTCA--GTTTTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTACTAAAA-TACC-AAATATAgtatacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----TCTGTG--GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC-GAT-TCA--GTTTTTCC--CCAACAATTGTTTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC----
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTT-AAATGGAATGTTGTTTTTCTGT-------GC---------GC-CAATAGTA-TGA-TGTTTTGATGTC-AT--TCA--G--TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-CTTACCGACC--GGTAC----taaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT
Alignments
lowQualScore : 111 1111 33 111 1111 2222222 888888888888888888888888 44444444444444 11 333333 1 1 333333 1 1 11 33333333 1 11 2222 33333333 1 1 222 2222 6666666666 1 1 111 44444444 222 33333333333333333 33333333 222222222 33333333333333 55555555555555555
lowQualScore : 777 7777 66 0 000 2222 1 77 4444444 1 000000000000000000000000 6 6 7 6 6 00000000000000 99 6 1 6 6 6 11 777777 3 7 5 1 000000 5 5 88 66666666 5 88 4444 1 44444444 1 5 1 5 111 3333 22 6 7 1111111111 2 2 0 0 0 0 888 44444444 333 0 999 11111111111111111 33333333 5 0 333333333 0 11111111111111 55555555555555555 0 0 5 0 5
lowQualScore : ... .... .. . ... .... . .. ....... . ........................ . . . . . .............. .. . . . . . .. ...... . . . . ...... . . .. ........ . .. .... . ........ . . . . ... .... .. . . .......... . . . . . . ... ........ ... . ... ................. ........ . . ......... . .............. ................. . . . . .
lowQualScore : 555 0000 00 6 888 1111 0 99 3333333 7 333333333333333333333333 7 7 8 7 7 33333333333333 22 7 0 7 7 7 00 777777 3 3 5 0 000000 5 5 00 00000000 0 55 5555 0 55555555 0 5 0 5 000 5555 00 7 3 3333333333 0 5 8 8 2 0 555 33333333 333 2 555 00000000000000000 44444444 0 1 444444444 1 99999999999999 00000000000000000 2 4 0 5 0
consensus : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC-GG--TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
Reference ( family-4372 ) : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC-GG--TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
gi|1 : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATC--CAAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAGAGGAATG-------------------AC---------AA-CAA---TAATGA-TGCTTTGAT-T---------------TTCC--CCAACAATTG-TATTGTACA-ACACTTA-C-AACCTACC--GACAC------TATC-AAATATAATAAAAAACATCATTTCAA-GCTCTAGCTT--CGTTTTATACAATATGGTGCACATTTGCTG-TGAA--ACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTT--TGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTT-GAAATTGTTCTCGTTTCACTTT-CCTTTTA---ATTGTAGATTACAAA-CACAACAC-----C-----T-----TCACAAGAGGTCCCATACCTGTCT--------ACATTTATT-CACTAGCTGCATGTTCGAACCAAT------TCCTTGCGAT---TAT--------CATGC--TG-C-TCATG-AGTTGAATTTAGCA-TAAATTGCTAAA-GGCAAA
gi|10 : AGTAACTTTTTCATTGTTGTT-AAAA-----CTCTCTT----------TTGA---GTTGTAGTTTCCA---CACCACAC-----C-----T-----CCTCGAGAGGCCCTA-AATTGTT--------AATAGTTATT-CACTTACCGCGCGTTGGAA---------------TGCG----------------TGTGC---G-C-T-----A---AAATTTAGCA-TAAATTGCTGAA-GACAAA
gi|11 : TTTACGTA-CACAACAT-----C-----TGTACTTTATACGAGGCCCTATACTTGCTTGT-----AACATTTATT-CACTAGCCGCATGTTCAAATCAAT------TACTTGTGAT---AAT--------CATGC--TG-T-TCATGCAT--AAATTT--CC-TGA--TGCCAAA-GACAAAtaataatggaaagtttagt
gi|12 : caTTCTAGTTTACAAA-CACAACATACATAC-----T-----TCACGGGAGGGCCCATACTTGTTT--------ACGCTTTTT-CACTTGCCGCATGTTCGAATCAAT------TAATTGTCGT---CAT--------CATG----A-C-T-AC--------ACTTAGAA-TAAAATTCCAAA-GACAaaatagtaaagtctattaatt
gi|13 : ----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAGTGGAATATTGCTT-----TCAGTATGAC---------ACGTAC-AGTAATGA-GGCTTTGAT-TT-GGAATAA--GGGTTTCC--CCAACATATG-CTGTGTGCA-GCATTTA-C-TACCtatgataatggaaagtttagtata
gi|15 : aGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCTCAT-CTTTTTT-TTAAAAAAGAGTTGTT-CGCTAACTGCGAGTTtaataaata
gi|2 : GACC---AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTT-----T-------TCTGTATGGTAAC-CAC-AGTATTTAGTGCTTTGAT-TTTGA--TTAAGGTTTTTCCAACCAACAATC--TTTTGTGCAAGCATTTAAC-AACCTACCTTGATAA----AATACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGCA-A-----------------TCTCTTC--------------ATGTTGTTAGAAATCGTTCTCTCTTTA--TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACAT-----CTGTATT-----TCACAAAAAGCCCCTTATTTGTTT-A-----CACTTTTATT-CACCAGCCGCATATTGAAATTAAT------TA--TGTGAT----ATA-------CATAC--TGACGC-ATG-AAT-AAATTTAGTATTAAATAGCCAAAGGGCAAAagcgtgtgtaataaacttaaacataaa
gi|3 : CCTTTTATACAGTCTACACGGGTTGCATA--TAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTT-GAAGT--TTCT
gi|3 : tgTA-A---ATACTTAGCA-TAAATTGCTAAA-GACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatacttagcataaattgctaaagacaagtaataatggaaagtctagtaatcc
gi|4 : tgccttttatacagtctacacgggttgcatataacgtcgatacctttctcttcaagtaacttctttagttttgttgaagtttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA----AGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAAgtaataatggaaagtctagtaatcc
gi|5 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcactgatttttggagtaccg-T-----AATATTTAAAACAC-AGCTGCATGTTCGAATCAGT--------CTTGTGAT---CAT--------CATGCAGTG-C-------------ATTTTGCA-TAAATTGCCAAA-GACAAA
gi|6 : tactgATTTATT-CATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGATCGGCATTAAAATCACATGC--TA-T-T-AGT-A---AAAGTTAGCA-TAAAATACCAAA-aacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTCTG-T-------GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC-GGATTCA--GTTTTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTACTAAAA-TACC-AAATATAgtatacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----TCTGTG--GC---------GC-CAA-AGTATTGA-TGTTTTGAT-TC-GAT-TCA--GTTTTTCC--CCAACAATTGTTTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC----
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTT-AAATGGAATGTTGTTTTTCTGT-------GC---------GC-CAATAGTA-TGA-TGTTTTGATGTC-AT--TCA--G--TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-CTTACCGACC--GGTAC----taaata
blockSeqs : . . GC CTT ATAA A AA ATTACCT T TTCTGTATGGTA G T A G G TTGATTAAGGTT AA T T A A T TT TAAAA C A . T . T . TC . G TA AAAA A TGGAACAG A T C . . . GT C T TAACGTCG A C A TCG TATTGT AGG TAG CTGTACT TTAAAAA A TACTTGTAC CGGCATTAAAATCA TGACGCATGAAT T G
blockSeqs : . . . T . A . T A TCAGTATGAC . . T . . TGGAATAAGGG . . T . . . . AA . . . . . . C . T . . TA ACATACT GTA . TAC AAT TGTTCATGCAT . .
blockSeqs : . . . T . A . . A TCTGTGGC . . T . . CGGATTCAGTT . . A . . . . . . . AA CTGTATT AC . TAA CAT TATTAGTA . .
blockSeqs : . . T . T . . A TTCTGTGC . . T . . CGATTCAGTT . . A . . . . TA CT TA . TA ATA ACTAC . .
blockSeqs : . . T . . A TCTGTGC . . . . . CATTCAG . . A . . . . CT A . C CAT AGTGC . .
blockSeqs : . T . . . . . . . GCTA . .
blockSeqs : . . .
blockSeqCons : **** ** TTCTGTGGC*************** CGGATTNAGTT*** CCGTACT********** TA****** TANTAT***********
originalCons : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTT-----T-------GC---------GC-CAA-AGTATTGA-TGCTTTGAT-TC-GG--TCA--GTTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACAC-----C-----T-----TCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGC--TG-C-T-ATG-A---AAATTTAGCA-TAAATTGCCAAA-GACAAA
finalCons : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTTCTGTGGC---------------GC-CAA-AGTATTGA-TGCTTTGAT-TCGGATTNAGTT---TTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACACCCGTACT----------TCACGAGAGGCCCCATACTTGTTTTA------ACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGCTANTAT-----------AAATTTAGCA-TAAATTGCCAAA-GACAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT
Alignments
lowQualScore : 111 1111 22 111 1111 2222222 1 222 11 111 11 333333 1 1 333333 1 1 11 33333333 1 11 2222 33333333 1 1 222 2222 6666666666 1 1 1111 33333333 111 222222 22222222 111111 5555555555555555555555555555555555555
lowQualScore : 777 7777 22 0 000 2222 1 77 4444444 1 6 3 99 000 777 6 7 6 6 88 3 666 99 6 1 6 6 6 11 777777 3 7 5 1 000000 5 5 88 66666666 5 88 4444 1 44444444 1 5 1 5 111 3333 22 6 7 1111111111 2 2 0 0 0 0 0000 44444444 777 0 888 777777 99999999 4 0 0 444444 00 1 0 4444444444444444444444444444444444444 0 66 0 5 0 5
lowQualScore : ... .... .. . ... .... . .. ....... . . . .. ... ... . . . . .. . ... .. . . . . . .. ...... . . . . ...... . . .. ........ . .. .... . ........ . . . . ... .... .. . . .......... . . . . . . .... ........ ... . ... ...... ........ . . . ...... .. . . ..................................... . .. . . . .
lowQualScore : 555 0000 00 6 888 1111 0 99 3333333 7 3 2 22 000 555 7 8 7 7 77 3 888 22 7 0 7 7 7 00 777777 3 3 5 0 000000 5 5 00 00000000 0 55 5555 0 55555555 0 5 0 5 000 5555 00 7 3 3333333333 0 5 8 8 2 0 8888 55555555 555 4 444 333333 55555555 4 1 2 444444 99 4 2 6666666666666666666666666666666666666 1 99 4 0 5 0
consensus : TTGCTAC---GAGTA----AGAT-CTAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGCTTTTC--TGT--GGCG-C-CAA-AGTATTGA-TGCTTTGAT-TC-GATTCAG-TTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACACCCGTACTTCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGCTGNT------A-----T-AAAT--TTAGCA-TAAATTGCCAAA-GACAAA
Reference ( family-4372 ) : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAANGTAGATCA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTGTTTTTC--TGT--GGCG-C-CAA-AGTATTGA-TGCTTTGAT-TCGGATTNAG-TTTTTCC--CCAACAATTG-TTTTGNGCA-GCACTTG-C-TACCGACC--GGTAC----A-TACC-AAATATAATANAAGGCATCATTTCAATGCTCTAGCTCTCCGCCTCATACAATATGGCGCACATTTGCTGGTGGATAACTTCCCAAAACNCAAATGGAACAGAANCAGACATCTTNATTTGTCTTTTTAACTGAACTGTANNCCAATATCCCTTTTATACAGTCTACACTGGTTGCATA--T--CGCC-ATACCTTTCTCTTCGAGTAACTTTTTTAGTGTTGTT-GAAATCGTTCTCTCTTCA--TT-CCTTTTA---GTTGTAGTTTACATA-CACAACACCCGTACTTCACGAGAGGCCCCATACTTGTTT-T-----AACATTTATT-CACTAGCCGCGTGTTCGAATCAAT------TACTTGCGAT---CAT--------CATGCTANT------A-----T-AAAT--TTAGCA-TAAATTGCCAAA-GACAAA
gi|1 : TTGATACTTGGAGTACCCAAGATACTAAACATTGCTCTGTATC--CAAGTCTT----GAAAGGAAATCA--GTTATTTCGT-------CTGAAGTTAAAGAGGAATG-----------------ACA-A-CAA---TAATGA-TGCTTTGAT-T-------------TTCC--CCAACAATTG-TATTGTACA-ACACTTA-C-AACCTACC--GACAC------TATC-AAATATAATAAAAAACATCATTTCAA-GCTCTAGCTT--CGTTTTATACAATATGGTGCACATTTGCTG-TGAA--ACTTCCC----CCCAAA--------AATCAAACA-CTTGATTTGTCTTTTTAACTGAACTGTACGCCAATATCCCTTTTATACAATCTACACTGGTTGCCTATTT--TGCC-ATACCTTTCTTTTCGAGTAAATTTTTTAGTGTTGTT-GAAATTGTTCTCGTTTCACTTT-CCTTTTA---ATTGTAGATTACAAA-CACAACAC-----CTTCACAAGAGGTCCCATACCTGTCT--------ACATTTATT-CACTAGCTGCATGTTCGAACCAAT------TCCTTGCGAT---TAT--------CATGCTGCTC-----ATGAGTT-GAAT--TTAGCA-TAAATTGCTAAA-GGCAAA
gi|10 : AGTAACTTTTTCATTGTTGTT-AAAA-----CTCTCTT----------TTGA---GTTGTAGTTTCCA---CACCACACC-----TCCTCGAGAGGCCCTA-AATTGTT--------AATAGTTATT-CACTTACCGCGCGTTGGAA-----------TGCGTGTG------------------CGCTA----------------AAAT--TTAGCA-TAAATTGCTGAA-GACAAA
gi|11 : TTTACGTA-CACAACATCTGTACTTTATACGAGGCCCTATACTTGCTTGT-----AACATTTATT-CACTAGCCGCATGTTCAAATCAAT------TACTTGTGAT---AAT--------CATGCTGTTCATGC-A-----T-AAAT--TT--CC-TGA--TGCCAAA-GACAAAtaataatggaaagtttagt
gi|12 : caTTCTAGTTTACAAA-CACAACATACATACTTCACGGGAGGGCCCATACTTGTTT--------ACGCTTTTT-CACTTGCCGCATGTTCGAATCAAT------TAATTGTCGT---CAT--------CATG--ACT------A-----C---AC--TTAGAA-TAAAATTCCAAA-GACAaaatagtaaagtctattaatt
gi|13 : ----GAAAGTAAATCA--GTTACTTGGTATTACCTTTGATGTTTAAGTGGAATATTGCTTT-CAGTAT--GACA-CGTAC-AGTAATGA-GGCTTTGAT-TTGGAATAAG-GGTTTCC--CCAACATATG-CTGTGTGCA-GCATTTA-C-TACCtatgataatggaaagtttagtata
gi|15 : aGTTTACATA-CACAACACC-----TTCACGAGAGGCCTCAT-CTTTTTT-TTAAAAAAGAGTTGTT-CGCTAACTGCGAGTTtaataaata
gi|2 : GACC---AAGCGTA----GAAAGTAAATCAAAGTTATTTCCTT------CTGATGCTAAAATAAAATATAGCTTTTC--TGTATGGTAAC-CAC-AGTATTTAGTGCTTTGAT-TTTGATTAAGGTTTTTCCAACCAACAATC--TTTTGTGCAAGCATTTAAC-AACCTACCTTGATAA----AATACCCAAAT-TAA-ATAAGGC------TCAATGCTC-AGCTCTCCGCCTC--------TGACGCACATTTGCTGGTGGATAATTTCCCAAAATACAAATGGAACAGAAACAGACATCTTCA-TTG---TTTTA----AACTGTAGTTCAATATC----TTATTAAGTTTGAATTGGTTGCA-A-----------------TCTCTTC--------------ATGTTGTTAGAAATCGTTCTCTCTTTA--TTGTCTTTTAAGGGTTATCGTTTACATAGTACAACATCTGTATTTCACAAAAAGCCCCTTATTTGTTT-A-----CACTTTTATT-CACCAGCCGCATATTGAAATTAAT------TA--TGTGAT----ATA-------CATACTGACGCATGAA-----T-AAAT--TTAGTATTAAATAGCCAAAGGGCAAAagcgtgtgtaataaacttaaacataaa
gi|3 : CCTTTTATACAGTCTACACGGGTTGCATA--TAACGTCGATACCTTTCTCTTCAAGTAACTTCTTTAGTTTTGTT-GAAGTTTCTNNNNNNNNN--NN-NNNNNNN---NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNN---NNN--------NNNNNNNNN------N-----T-AAATACTTAGCA-TAAATTGCTAAA-GACAA
gi|4 : tgA----AGATGCCATATATTGCTTTGGACCCTTGAGTATTATAAGGAAGTAAGTTA--GTTACTTCCT-------CTGATGTTAAAgtaataatggaaagtctagtaatcc
gi|5 : gatggatgaacttagcgaataataacttctcatgacttgaagttatctgtatttacaagagatgtttccatggtaccgtactaaaacaatgtccaaaatatttaagagtggttttaacactcacatgactgcactgatttttggagtaccg-T-----AATATTTAAAACAC-AGCTGCATGTTCGAATCAGT--------CTTGTGAT---CAT--------CATGC-AGT------G-----C-A--T--TTTGCA-TAAATTGCCAAA-GACAAA
gi|6 : tactgATTTATT-CATTAGCCGCGTGTTCGAATCAATTACTTGTACTTGCGATCGGCATTAAAATCACATGCTATT------AG----TAAAAG--TTAGCA-TAAAATACCAAA-aacacaattggaagtccagtaattcattaaaaatatggggagtaaaaattggtattcgaaccactgatatgcagattgggtcctggccaaaatgttcgacgagactgtc
gi|7 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTG-TTTTC--TGT---GCG-C-CAA-AGTATTGA-TGTTTTGAT-TCGGATTCAG-TTTTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-C-TACCGACC--GGTACTAAAA-TACC-AAATATAgtatacgataatggaaagttttagtattatataaattttatacatttataaaaataggggaaccaactggtatattatgcaatttggatctgtccaa
gi|8 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTTAAAATGGAATGTTG-TTTTC--TGT--GGCG-C-CAA-AGTATTGA-TGTTTTGAT-TC-GATTCAG-TTTTTCC--CCAACAATTGTTTTTGAGCA-GCACTTG-C-TACCGACC--GGTAC----
gi|9 : TTGCTAC---GAGTA----AGAT--TAAATATTTCTCTGGACC--TAAGCGTC----GAATGTAGATTA--GTTATTTCGT-------CTGATGTT-AAATGGAATGTTGTTTTTC--TGT---GCG-C-CAATAGTA-TGA-TGTTTTGATGTC--ATTCAG---TTTCC--CCAACAATTG-TTTTGAGCA-GCACTTG-CTTACCGACC--GGTAC----taaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAGATGGTTGAGCCTTGCGAACAATAAGCCTATTCACGACTGGAAAGCGATAACACATCGGGAGTTTACGTATTTACAATAGATACAGTGCCGTACAGTGACATTGTCGAAAATATTTAAGGTGGTTCT
Unaligned ( gi|16 ): AAGAACATGGGTGAGCTTAGCGAACAATAAGTCTATTCCCCAACTGGACACCAGTTGTAATTACAATAGAT
Unaligned ( gi|17 ): ATGTGGTGAGCTTTACGACAATATGCCTATTCACAATGGGAAGGCGATCACGAGTCGCGGCGAGTTT
Unaligned ( gi|18 ): GAAGATGGGTGGGCTTTGCAATAAGCCTATTCGTGAACGATTGGGAA
Unaligned ( gi|19 ): AGAAGATGGTTGAGCTTTGCGAACAATAAGCCTATTCACAACT