lowQualScore : 111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555555 4 2 22 555555555 2 777777777777777777777777777777777777777777777777777777777 1 6666666666666666 1 555555555555555 2222 22 1111 333 222222 1 1111 888888888888 1 4444444444 22 222222222222222222222222222222222222222222 1 1 1 2222 33333333 11 222 3333333333 222222222 11 6666666666666666 444444444444444444444444444444444444444444444444444444444444444444444444444 1111 11111 111 22 11 222 444444444444444444 555555555555555555 22222 4444444444 1 222 222222 1 11 111 11111 55555555555555 222222222 22222222222222 11111 1 1 1111 1111111111
lowQualScore : 888888 6 0 0 6 6 22 2 88 111111111 0 2 555555555555555555555555555555555555555555555555555555555 77 2 5 66 9999999999999999 6 0 3 111111111111111 4444 00 6666 2 000 444444 0 3 0000 666666666666 0 5 0000000000 4 2 3 0 66 111111111111111111111111111111111111111111 0 0 2 0 1111 9 22222222 11 555 5555555555 666666666 11 8 0 1111111111111111 0 444444444444444444444444444444444444444444444444444444444444444444444444444 1 2222 0 3 2 0 3 6 3 99999 555 6 99 6 1 99 55 33 44 444 8 8 6 444444444444444444 99 000000000000000000 9 55555 0000000000 0 000 0 8 8 333333 0 0 11 8 555 8 3 6 66666 55555555555555 3 555555555 33333333333333 33333 3 44 1 4 3 3 3 00 0 555 3 6 44 3 3 0 2 777 0 888888 2222 555 5 99999 2 3 3 44 3 33 2 777 44 0000000000 2 2 2 2
lowQualScore : ...... . . . . . .. . .. ......... . . ......................................................... .. . . .. ................ . . . ............... .... .. .... . ... ...... . . .... ............ . . .......... . . . . .. .......................................... . . . . .... . ........ .. ... .......... ......... .. . . ................ . ........................................................................... . .... . . . . . . . ..... ... . .. . . .. .. .. .. ... . . . .................. .. .................. . ..... .......... . ... . . . ...... . . .. . ... . . . ..... .............. . ......... .............. ..... . .. . . . . . .. . ... . . .. . . . . ... . ...... .... ... . ..... . . . .. . .. . ... .. .......... . . . .
lowQualScore : 000000 0 0 0 0 0 00 5 00 555555555 0 5 000000000000000000000000000000000000000000000000000000000 00 5 0 00 5555555555555555 0 5 0 000000000000000 5555 55 8888 5 222 555555 5 2 5555 000000000000 2 0 8888888888 2 5 2 2 00 888888888888888888888888888888888888888888 0 5 2 0 2222 8 22222222 00 666 0000000000 444444444 00 0 8 4444444444444444 8 222222222222222222222222222222222222222222222222222222222222222222222222222 2 0000 8 5 5 8 0 7 7 33333 555 7 22 7 0 22 00 88 55 222 0 0 7 000000000000000000 00 888888888888888888 2 00000 0000000000 8 888 8 0 0 000000 8 0 88 0 222 0 8 7 77777 77777777777777 2 444444444 99999999999999 66666 3 66 3 8 6 3 3 99 0 888 1 2 22 3 3 0 7 555 9 444444 1111 000 7 66666 9 1 1 22 1 99 9 999 99 1111111111 9 9 9 9
consensus : NNAAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTCAATTCCGGAAAATAACGGANANNTTAATGANATCAATTATTTACAAANTACGAAATATATTTTCAAAATAAAAGAAAACCAAACCAATTCCGCGAANAACNCCCTCCCCCCCAAAAANNATNAGCTTCNNTTTGGCCNNGAGATTTTGAAAATGANCAATTANTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATA-TAAGACATTTCCCCCC--TTCGCAA--TG-TCATTTGAGAAGTAAGNCAAA---T--TA---TTTTCAACTAAAATAA--AT--A---TTAAAATNAATACACCAATACTG-TTTGTT-AATAACTCG--TTAGTNG---TTTT----ACGTACAT-TATGC-ACATCTATCCCTTT-CTAT----TACTTGCTTGTTT----NCA-TGCGAATAAAGACGCGCAT--GATT-TGGA----------ATGTA--CATGTACAT--TG-TTATAC------T-------AGTATCGAGGACAA---GTG-------AAT-GG-------------------CCCG-CCAAAC-ATTT-ATCCGCGCC---GATC----GATACGT-TTGTATAAAAGCNACGAGGAGTANT-TTTTTTTT----GAAA-A-TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGCC-TGC-GGATA--TT-GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACT-CTTTAGCCGCCTCACTAACACCGCAAGT--AACGCAGC-----TAAAAAAGCTAGGT-AAACTGTGCTCACGAATTGAAACGCTGT-CAA-CGATACAGACCATGTTAGG------ACGGTGGACGAAATCAG-AAGGAA-AAGGA-CCACATACATG-A-----ATAGCACAAAAAAGATT--ACC-------ATGACTTTCGTGACAA-TCTTAAGACCATCCTAAGACATGTT---GC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-A--GG-A-C-TCAA-TC-G-AAAACATGTCTT----ATGA----C---TT-AG---G-CA-TGTCCTAAG-A-CCA--T-CCTAA--GACA-T---G-TCT----C-----A-GT-CCT-AAG-ACACTTTCGAAAACCA
Reference ( gi|2 ) : CCAAAAATGAACAACATCTTTTGAAATCACCTTTAGTTTAATACATA-AGAA-TGAGAAACAAACAATTTTGATTTAATTTAGGAAAATAATGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTAT----AATCAAACAAA--CAAACAAATTTTAAAAAAAATTT------------AAAAAATCACCTTCAATT--GT-ATGATATTTAAAAAACGACCAATTATTATATGAT-----ATG------TGAGGTGAATAT-AAATAATTATT-TAAGACATCCCCCCCCCCTTCACAA--TG-TCAATTGAGAAGTAAGACAAA------TG---TTTTCAACGAAAATAA--A---A---TCAAAATGAATACACCAATATTG-CTTGTT-G-TAA--GG--TT--TTG---TTTT----ACGTACATTTATGC-ACATCAATTCTTTT-CTAT----TACTTGCTTGTTT----ACA-TGTGAATAAAGACACGCAT--GAA--TGGA----------ATGCA--CATGTATAT--TG-TTATAC------T-------AGTATTGAGGACAA---GT--------AAT-GG-------------------TCCG-CCAAACGA----ATCCGTGCT---GATC----GATACGT-TTGTATAAAAGCAACGAAGAGTATT-TTTTTTTT----GAAA-G-TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-AGATA--AT-GC-TACATGAAGT-GGAAAAGAATA------AGACTTTACT-CTTTAGCCGCCT----AACGTCGCAGGT--AACGCAGC-----TAAAAACGCTTGGT-AAACTGTGTTCACGAATGGAAACGCTGT-CAA-CGATACAGACCATGTTAAG------ACGGTGGAGGAAATCAG-AAGAAA-AAGTA-CCACATACATG-A-----ATAGCACAAAAAAGAGT--AAA-------ATGACTTTTGTGACGT-TCTTAAGACCATCCTAAGACATGTT---GC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-A--GG-A-C-TCAA-TC-G-AAAACATGTCTT----ATGA----C---TT-AG---G-CA-TGTCCTAAG-A-CCA--T-CCTAA--GACA-T---G-CCT----C-----A-GT-CCT-AAG-ATACTTTCGAAAACCAT
gi|1 : AAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTTTAATGATA-CAATTATTT-CAAAATACGAAATATATTTTCAAAATAAAAGAAAACCAAACCAA----ACAAACAACCCCCTCCCCCCCAAAAAAAATCAGCTTCCATT--GC-CTGAGATTTTGAAAATGATCAATTAGTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATT-TTAGAAATTTTCCCCC--TTCACAA--TG-TAAATTGAGAAGTAAGACAAA------TAATATTTTCAGCTAAAATAA--A---A---TCAAAATGAATATACAAATATTG-TTTG-----------G--TT--T-G---TTTT----ACGTACATGTATGC-ACATCAATTCTTTT-CTAT----TACTTGCTTGTTT----CCA-TGTGAATAAAGACACGCAT--GAT--TGGA----------ATGTA--CATGCACATGTTG-TTATAC------T-------AGTATTGAGGACAATAGGC--------ACT-GG-------------------TTCA---AAAATA----ATCC-CGCCAAAGATC----GAAACGT-TTGTATAAAAGCAACGAGGAGTATT-TTTTTTTT------AA-C-TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-ACATA--TT-GC-TACATGAAGT-AGAAAAGAATA------AGACTTCACT-CTTTAACCGCCTCACTAAC-CCGCAAGT--AACGCAGC-----TAAAAAAGCTATGT-AAACTGTGTTCACGAATTGATACGCTGT-CAA-CGATACAGACCACGTTAGG------ACGGTGGAGGAAATCCG-AAGGAA-AAGGA-CTACATACATG-A-----ATAGCACATAAAAGATT--ACC-------ATAACTTTCGTGACAA-TCTTAAGA-CATCCCTAAACATG-T---GCCCCCCCCTTTGCA-C-CTCC-----AGAT--AATCTTATCCTT-AGG-ACGA-ATC---C--AACTT-A--GG-A-C-TCAA-TC-G-AAAACAT-TCTT----ATGA----C---TTAAG---G-CA-TGT-CTAAG-A-CCA--T-CCTAA--GACATT---G-TCT----C-----A-G--CCT-AAG-ATAC-TTCGAAAAC
gi|20 : caaaccaAA-TGGGAAACAAATAATTTTGATTCAATTCTGGAAAATAATAGAAAAAT-----AAATCAATTATTTACAAACTAag
gi|4 : AATTCCGGGAAAAATAT------------AAATCATGAACTTCACTTTGGCCAAAAGATT---AAAATAAGCAATTATTATATGATTTAACATGCATTGTTAAAGTGAAAAGGAAATGATTATA-TAAGACATTTTCCCCC----TGCAATTTGTTCATTTGAG-AGTAAGACAAAACAT--TAT--TTTTTAACTAAAATAA--AT--AAATTTAAAATGA--ACTTCATTACTGTTTTGTTAA-TAA--TGCCTTAATTG---GTTTCTTAATGTAC----ATGCAACATTTCTCCCTTT-CTAT----TAC-TGCTTGTTT----TCATTGTGAATAAAGACGCACTTTAGAATTTGGATTAGAATCGTATACATGTATGTACAT--TGTTTATAT------CAAGGATGAGTAATG-GGACAA---ATGGTTCGAAAATAAG-------------------CCCGCCCAAAC-ATTTTATCCGTGCT---TTTCCGGGGATA----TTGTATAAA
gi|3 : aaaaaaaaaatattaattatTATGA------ATG------TGGGGTGAA-AT-AGATAATTATAATAAGACATTTCCT-----TTCACAA--AA-TCATTTGAAAAAT---TCAA------------TTTTAAACTAAAGTAATGA---A---CTGGAAACAATACACTAATACTGATTTGTT-GATAACTCG--CT--TAGGGTTTTT----A---ACA--TATGA-TTATCTATCCTTCTACTGTGTAATAATTGCTTGTTC----A-A-GACAAATAAAAGCGCGTAT--GGAT-TGGG----------ATGCA--CTAGTGCAT--T--TTATA------------------ATCAAGGTCAA---GTGAGGGC--GAT-GG-------------------GCTG-AAAAAT-A----AGCCG-----------------CACGTGTTTTATAA---TTCCGAA----ATTATCTCGTGT----GAAA-A-ACAT--TTATGAAAAAT-C--ATCCTATGAAAGTC--GGGAGCTTTGC-CGATA--TT-GC-TACAC-AAGTGGGAGAAAGATA------ACATTGT-CT-GTTT-TCCGCTT----CAC-T------T--AACAC-GC-----TAAAA--------C-AAACTATG-----GAA---AAACTATGTACAATCGAATTAAACCATGTAAAGTTAGACATGG-GAACTAAATCAG---GAAG-AAATATTCACGTGCATA-A-----GTAG---AAAAAAt
gi|7 : GTGAAAGT-AAATAATTATA-TAAGAC----CCCCCTCCTTCATA----G-TCATTTGAGAAGTGATTCAAACATTACTA---TTTTCAACTAAAATAA--ATGAA---TGAAAATTAATATATCAATATCG-TTTGTT-AATAATTGC--TTAGTGG---TTTT----TCA-ACAT--ATGC-ACATCTATCCCTTT-CTAT----TACATGCTTGTTTATAAATA-TGTGAATAAAGAAGTGTAT--GGT--TGGA----------ATGTA--C------AT--TG-TTA-------------------TATCAAGGACAA---GT--------AAT-GG-------------------
gi|9 : AATAAAGACACGCAT--GAT--TGGA----------ATGTA----TGTACAT--TG-TTATACATGTACT-------AGTATTGAGGACAA---GT--------AAT-GGACAATGGTTAAAAAATAATCCCG-CCAAAC-ATTT-GTCCGTGCT---GATC----GATACTT-TTGTATAAAAGCCACGAAGAGTAGT-TTTTTTTTAAAAAAAA-G-TCAT-GCCATG--AAAT-CTAATCTTGTG--TGTCCAAGGAGgcaatggttaaaaaataagcccgc
gi|22 : AAAGCAACGAGGAGCAGT-GT-----------AAT-G-TCAT-GCCACC--AAAT-CCAATTTTGCG--TGT
gi|17 : -TTTTTATT----GAAA-AATCAT-GCCATA--AAAT-CCAAACTTACG--TGTCCGAGGGGC--TGC-GGTTA--TT-GT-TGCACGAAGT-GGAAAA
gi|13 : g-TTTTTATT----GAAACA-TCATTGCCACG--AAATATCAAAACAACG--TGTCTGAGGAGCC-TGCCGGATATTATCGCATACATGAAGT-AGAA--GAAT------------------CTTTAGCCGCCT----CAC
gi|5 : T-GC-TACACGGGGT-GGAAAAGAACA---------CTTAACCGCCTTA-----CT----AACACCAAAGCTTTAACGTCGCAAAAATAAAAA-GCTTGGGGAAACTGTACTCACGAATTCAA-TGATGC-CAA-CGATACAGACCATGTTAGG------GCGGTGGACGCATGCAG-GAGGGA-ATGAA-CCAC--ACACG-A-----ATAGCACAAAAAAGATTTCACC-------ATGAC-TCCATGGCAA-TCTTTCAACAAGCCTAAGACATGTT---GC--------TTG-A-C-GTCCTT--AAG-----------------AAG-ATGA-ATC---CT-AAGTT-A--GG-A-C-TCAG-TC-G-AAAACAtaatactacaactaacgc
gi|16 : AGT-GGAAAAGAATACTAGTAAGGCTTTACT-CTTTAGCCGTCTCACTAACATCGCAAGT--AACGCAGC-----TAAAATAGCTAGGT-
gi|10 : TGCTCACGAATTGAAACACTGT-CAA-CGATACAGACCATGTCAGG------GCAGTGGACGAAATCAG-AAAGAA-ATGGA-CCACATACATACATGTATATAGCACAAAAAAGATT--ATC-------ATTA-------------TCTTAAGACCATCCTAAGACATGTA---GT--------TTG-A-C-GTCC-T--AAGATTGAATC
gi|6 : aaagaaaagaaaaaAACGCTGT-AAA-CGATACAGACCATGTTAAG------ATGGTAGACGAAATCAGGAAGAAATAA--A-CCACATGCATG-A-----ATAGCGCTAGCATGAG---AAATATGATCATGACTTTCGAGACAA-TCT-AAGACCATCATGAGACATGTT---GC--------TTG-A-C-GTCC-TTTAAGACCGAATCTTAT-CTT-AAG-ACGA-ATC---TT-AACTT-A--GA-A-C-TCAA-TA-G-AAAACATGCTTT----ATGA----C---TT-AA---G-CA-TGCCCTAAG-A-CCA--T-ACTAA--GATA-T---G-CCT----C-----A-GT-TCA-AAG-ACACTTTTGAAAACCA
gi|8 : ACATG-A-----ATAGCACATAAAAGATT--ATC-------GTAACTTTCGTGACAA-TGTTAAGACCATCCTTAGACATGTT---GT--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-CAG-ACGA-ATC---CT-AACAT-A--TG-A-C-TCAA-TC-G-AAAACATGTCTT----ATGA----C---TT-AA---G-CA-TGGCTTAAG-A-CTA--T-CCTAA--GACA-T---G-TCT----C-----A-GT-CCT-AAG-ATACCTTCGAAAACCAg
gi|11 : -------ATGACTTTAG--ACATGTCCGAAGACCATCCTAAGACATGT-----C--------TCA-----GTCC-T--AAGATggg
gi|6 : ctttatctttaggacaaatcctagcttagggactcaatcgaaacatgtctttttcGGCAT-GCTTAAG----TCATAAAGCATGTT---TTCTA-----TTG-A---GTTC-T--AAG-TTAAGATTCGT-CTT-AAG-ATAAGATT---CG-GTCTT-AAAGG-A-CGTCAA-GC-----AACATGTCTC----ATGATGGTC---TT-AG---A-T--TGTCactttcgaaaacagg
gi|8 : aacgctgtaaacgatacagaccatgttaagatggtagacgaaatcaggaagaaataaaccacatgcatgaatagcgctagcatgagaaatatgatcatgactttcgaCTTAAG----TCATAAGACATGTTTTCGA--------TTG-A---GTCA-T--ATGTTAGGAT-TCGT-CTG-AAG-ATAAGATT---CA-ATCTT-A--GG-A-CGTCAA------ACAACATGTCTctaagaccatactaagatatgcctcagttcaaagacacttttgaaaaccag
gi|15 : acatgaatagcacataaaagattatcgtaactttcgtgacaatgttaagaccatccttCTTCAAACCATCCCAAGA-ATGTT---GC--------TTG-G-C-GTCT-T--AAGATGGAATCTTAT-CTT-AGG-ATGA-GTC---CT-AACTT-A--catggcttaagactatcctaagacatgtctcagtcctaagataccttcgaaaaccaggg
gi|18 : aaaatagattatcaaaaTTAAGACCATCCTAAGACATGT-----C--------TTG-AGCAATCC-T--AAG
gi|19 : caacttacatgttttaacagGACCATCCTAAGACATGTT---TC------------A---GTTC-T--AAGAgcactttcgaaaaccagga
gi|8 : catgtcttatgactaaagaatgtcatttTCT-T--AGGACTGAGACATGT-CTT-AGG-AT-A-GTC---TT-AAGCC-A--TG---C-TTAAGTC-ATAAGACATGTTTT-----CGA----T---TG-AG---T-CA-TATGTTAGG-ATTCG--T-CTGAA--GATA-A---G-ATT----C-----A-AT-CTT-AGG-cactttcgaaaaccaggg
gi|5 : acatgaatagcacataaaagattatcgtaactttcgtgacaatgttaagaccatccttagacatgttgtttgacgGACTGAGTCCTAA-CTT-AGG-ATTC-ATC---TT---CTTAA--GG-A-CGTCAA-GC-----AACATGTCTT----A-GG----C---TT-taccttcgaaaaccaggg
gi|14 : tgctacacggggtggaaaagaacacttaaccgccttactaacaccaaagctttaacgtcgcaaaaataaaaagcttggggaaactgtactcacgaattcaatgatgccaacgatacagaccatgttagggcggtggacgcatgcaggagggaatgaaccacacacgaatagcacaaaaaagatttcaccatgactccatggcaatctttcaacCTTAA-CTT-AGGCATGATCTC---CTCAACTT-A--GA-A-T-TCAA-TC-A-AAAA---------------A----C----T-AA---A-CA-TGCCCAAAG-A-CCA--T-TCT-A--GACA-CG--G-TCT----C-----A-GT-CTTGAAG-ACAgaaaaca
gi|11 : gTTAT-CTTTAGG-ACAA-ATC---CT-AGCTT-A--GGGA-C-TCAA-TC-G-AAA-CATGTCTTTTTCATGA----C---TTTAG---A-CA-TGTCCGAAG-A-CCA--T-CCTAA--GACA-T---G-TCT----C-----A-GT-CCT-AAG-ATACTTTCGAAAACgt
gi|12 : ct-AGG-ATGA-ATCTCCCT-AATTTTA--GA-AAT-TCAA-TCCG-AAAACATGTCTT----ATGG----CCCTTT-AAAGAG-CA-TGGCCAAAATA-CCAGAT-CCTAAAAGACA-T---GGCCT----C-----A-GT-CTT-AAG-ACATTTTCGAAagg
gi|11 : taT-ATCTT-A--GG-A-C-T---------GAGACATGTCTT----AGGATGGTC---TT-CG---GACA-TGT-CTAAA-G-TCA--TGAAAAA--GACA-T---G-TTT----CGATTGA-GTCCCT-AAG-CTA
gi|1 : ctttatctttaggacaaatcc-TC-G-AAG---TATCTT----A-GG----C---TG-AG---A-CAATGTCTTAGG-A-TGG--T-CTTA---GACA-T---G-CCT----TA----A-GT-CAT-AAGAATGTTTTCGActttcgaaaacagg
gi|19 : caaaccaaaaaatgacaattcctttgaaatcacctttagtttaatacatatagaaatgggaaacaaataattttgatttaattccggaaaataacgaacattttaatgatacaattatttcaaaatacgaaatatattttcaaaataaaagaaaaccaaaccaaacaaacaaccccctcccccccaaaaaaaatcagcttccattgcctgagattttgaaaatgatcaattagtatatgatatgtgaggtgaaaataaatgattattttagaaattttcccccttcacaatgtaaattgagaagtaagacaaataatattttcagctaaaataaaatcaaaatgaatatacaaatattgtttggtttgttttacgtacatgtatgcacatcaattcttttctattacttgcttgtttccatgtgaataaagacacgcatgattggaatgtacatgcacatgttgttatactagtattgaggacaataggcactggttcaaaaataatcccgccaaagatcgaaacgtttgtataaaagcaacgaggagtattttttttttaactcatgccacgaaatccaatcttgcgtgtccaaggagctgcacatattgctacatgaagtagaaaagaataagacttcactctttaaccgcctcactaacccgcaagtaacgcagctaaaaaagctatgtaaactgtgttcacgaattgatacgctgtcaacgatacagaccacgttaggacggtggaggaaatccgaaggaaaaggactacatacatgaatagcacataaaagattaccataactttcgtgacaatcttaagacatccctaaacatgtgcccccccctttgcacctccagataatcttatccttaggacgaatccaacttaggactcaa-TC-G-AAAG--TGTCTT----AGAA----C---TG-AA---A-CA-TGTCTTAGG-A-TGG--T-CAAAT--GACA-T---T-CTT----T-----A-GT-CAT-AAG-ACAaaacag
gi|12 : ca-TC-G-AAAA--TGTCTT----AAGA----C---TG-AG---GCCA-TGTCTTaaaccaggg
gi|19 : taaggatgaatctccctaattttagaaattcaatccgaaaacatgtcttatggccctttaaagagcatggccaaaataccagatcctaaCATGTCTT----ATGA----C---TA-AA---G-AA-TGTCATTTG-A-CCA--T-CCTAA--GACA-T---G-TTT----C-----A-GT-TCT-AAG-ACACTTTCGAAAACCAa
gi|10 : -TATCTTAAG-A-CCA--T-CCTAA--GACA-TGTAG-TTT----G-----ACGT-CCT-AAG-ATggg
gi|18 : aaagaaaagaaaaatgctcacgaattgaaacactgtcaacgatacagaccatgtcagggcagtggacgaaatcagaaagaaatggaccacatacatacatgtatatagcacaaaaaagattatcatTAAG-A-CCA--T-CCTAA--GACA-T---G-TCTTGAGC-----A-AT-CCT-AAG-GCACTTTCGAAAACCAtgaatc
gi|23 : caacttacatgttttaacagt--GACA-T---G-TTT----C-----A-GT-CCT-AGG-ACACTTCCGAAAACCAgga
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): AATGGTTAAAAAACAAGCCCGCCATTCATTTATCCATGGTTTTCCGAGCTATTGTAG
Alignments
lowQualScore : 111111111111111
lowQualScore : 2 2 1 55555 2 2222 11 2222222 000000000000000 3333333 111 222222222222222 11 1111 55555555555 3333333333 22222 1111 22222222 2222 1111 222222 11 111 1 222222222 1111 333333333 111111 777777777777777777777777777777777 3333 222222222222 222222 22 111 33333333333333 111 2222 1111 11 111 11111 111111 11111111 1111 111111
lowQualScore : 0 0 5 7 0 3 0 0 1 22 11111 1 7 3 1 4 4444 3 2 88 2 1111111 1 000000000000000 22 1 3 22 7777777 888 1 1 999999999999999 3 8 99 0 3 11 0 2 2222 8 1 0 3 1 00000000000 8 8888888888 1 1 0 8 8 0 77 99999 5555 00000000 7777 8 1 8 7777 0 111111 8 00 111 7 5 555555555 2 4444 99 6 111111111 6 999999 99 222222222222222222222222222222222 8 8 4444 777777777777 1 8 1 6 1 999 3 222222 5 77 5 77 33 11 99 111 6 5 88888888888888 1 5 2 111 5 5555 8888 1 11 5 6 222 6 1 5 44444 444444 66 1 22 8888 2 0 0 88888888 5 5 5 9999 7 5 4 4 4 777 4 4 5 5 5 0000 000000 888 0 4 66 55 4 4 4 8888 4
lowQualScore : . . . . . . . . . .. ..... . . . . . .... . . .. . ....... . ............... .. . . .. ....... ... . . ............... . . .. . . .. . . .... . . . . . ........... . .......... . . . . . . .. ..... .... ........ .... . . . .... . ...... . .. ... . . ......... . .... .. . ......... . ...... .. ................................. . . .... ............ . . . . . ... . ...... . .. . .. .. .. .. ... . . .............. . . . ... . .... .... . .. . . ... . . . ..... ...... .. . .. .... . . . ........ . . . .... . . . . . ... . . . . . .... ...... ... . . .. .. . . . .... .
lowQualScore : 0 0 5 3 7 7 7 7 0 00 33333 0 3 7 0 0 0000 0 5 00 5 7777777 0 000000000000000 00 0 7 00 3333333 777 0 0 000000000000000 8 0 44 8 2 00 8 8 8888 0 4 8 8 0 22222222222 0 4444444444 8 0 8 0 0 8 44 88888 4444 22222222 4444 0 4 0 0000 8 666666 0 88 777 8 5 888888888 5 2222 22 7 777777777 3 222222 22 999999999999999999999999999999999 0 0 8888 444444444444 0 0 0 4 0 777 0 333333 7 99 7 99 22 22 44 777 7 7 00000000000000 0 7 5 777 6 0000 2222 0 00 0 7 777 7 7 7 33333 444444 99 1 44 1111 5 1 4 11111111 0 0 0 0000 0 0 4 4 4 888 4 4 0 0 0 6666 111111 888 8 4 11 55 0 0 0 5555 0
consensus : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAACCAAACNAATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCA-GAGATTT-GAAAACGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA---TA----TATTTTC-AACTAAAATAA--AT--A---TCAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-A-TTTATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNA-CCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TT-AA---GCATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
Reference ( family-4239 ) : NNAAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTCAATTCCGGAAAATAACGGANANNTTAATGANATCAATTATTTACAAANTACGAAATATATTTTCAAAATAAAAGAAAACCAAACCAATTCCGCGAANAACNCCCTCCCCCCCAAAAANNATNAGCTTCNNTTTGGCCNNGAGATTTTGAAAATGANCAATTANTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATA-TAAGACATTTCCCCCC--TTCGCAAT--GT-CATTTGAGAAGTAAGNCAAA---T-----TATTTTC-AACTAAAATAA--AT--A---TTAAAATNAATACACCAATACTG-TTT-GTTAATAACTCG-TTAGTNGTTTT----ACGTACAT-T-ATGCA-CATCTATCCCTTT-CTAT----TACTTGCTTGTTT----NCAT-G-CGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-A-TTTATCCGCGCC---GATC----GATACGT-TTGTATAAAAGCNACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGCTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGAAGGAAAAGGA-CCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TT-AG---GCATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
gi|1 : AAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTTTAATGATA-CAATTATTT-CAAAATACGAAATATATTTTCAAAATAAAAGAAAACCAAACCAA----ACAAACAACCCCCTCCCCCCCAAAAAAAATCAGCTTCCATT--GCCT-GAGATTTTGAAAATGATCAATTAGTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATT-TTAGAAATTTTCCCCC--TTCACAAT--GT-AAATTGAGAAGTAAGACAAA---TAA---TATTTTC-AGCTAAAATAA--A---A---TCAAAATGAATATACAAATATTG-TTT-G----------G-TT---TGTTTT----ACGTACATGT-ATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----CCAT-G-TGAATAAAGACACGC---ATGATT-GGA--------ATGTACATGCA----CATGTTGTT-ATA-C------TAGTATTGAG------GACAATAGGC-------A------CTG-G------------TTC----AAAA-A-TA-ATCC-CGCCAAAGATC----GAAACGT-TTGTATAAAAGCAACGAGGAGTATTTTTTT--TTT--AA-C----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-ACATATT---GC-TACATGAAGT-AGAAAAGAATA------AGACTTCACTCTTTAACCGCCTCACTAAC-CCGCAAG---TAACGCAGCTAAAA----AAGCT-A--TGTAAACTGTGTTCA--CGAATTGATACGCTGTCAACGATACAGACCACGTTAGG-ACGGTGGAGGAAATCCGAAGGAAAAGGA-CTACATACATG-A-----ATAGCAC------ATAAAAGATT--ACCATAACTTTCGTGACAATCTTAAGA-CATCCCTAAACATG-TGCCCCCCCCTTTGCA-C-CTCC-----AGAT--AATCTTATCCTT-AGG-ACGA-ATC---C--AACTT-AGG-A-CTCAATC-GAAAACAT-TCTT----ATGAC---TTAAG---GCATGT-CTAAG-ACCA--TCCTAA--GACATT-G-TCT----CAG-CCT-AAGATAC-TTCGAAAAC
gi|10 : caaaccaTGCTCA--CGAATTGAAACACTGTCAACGATACAGACCATGTCAGG-GCAGTGGACGAAATCAGAAAGAAATGGA-CCACATACATACATGTATATAGCAC------AAAAAAGATT--ATCAT---T---------ATCTTAAGACCATCCTAAGACATGTAGT--------TTG-A-C-GTCC-T--AAGATTGAATCag
gi|11 : aaagaaaagaaaaaTTAT-CTTTAGG-ACAA-ATC---CT-AGCTT-AGGGA-CTCAATC-GAAA-CATGTCTTTTTCATGAC---TTTAG---ACATGTCCGAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACTTTCGAAAAC
gi|12 : ct-AGG-ATGA-ATCTCCCT-AATTTTAGA-AATTCAATCCGAAAACATGTCTT----ATGGCCCTTT-AAAGAGCATGGCCAAAATACCAGATCCTAAAAGACA-T-GGCCT----CAGTCTT-AAGACATTTTCGAAagg
gi|13 : taTTTTT--ATTGAAACA----TCATTGCCACG--AAATATCAAAACAACG--TGTCTGAGGAGC-CTGCCGGATATTATCGCATACATGAAGT-AGAA--GAAT-----------------CTTTAGCCGCCTCACTAATACTACAAC---TAACGC
gi|14 : CTTAA-CTT-AGGCATGATCTC---CTCAACTT-AGA-A-TTCAATC-AAAAA---------------AC----T-AA---ACATGCCCAAAG-ACCA--TTCT-A--GACA-CGG-TCT----CAGTCTTGAAGACA
gi|15 : g------AAAATAGATT--ATCAAAACTT------CAA-------ACCATCCCAAGA-ATGTTGC--------TTG-G-C-GTCT-T--AAGATGGAATCTTAT-CTT-AGG-ATGA-GTC---CT-AACTT-Agt
gi|16 : AGT-GGAAAAGAATACTAGTAAGGCTTTACTCTTTAGCCGTCTCACTAACATCGCAAG---TAACGCAGCTAAAA----TAGCT-A--GGT
gi|17 : TTTTT--ATTGAAA-AA---TCAT-GCCATA--AAAT-CCAAACTTACG--TGTCCGAGGGG--CTGC-GGTTATT---GT-TGCACGAAGT-GGAAAA
gi|18 : gTT--AC-ATG--TTT--TAACAGT--TAAGACCATCCTAAGACATGT--C--------TTG-AGCAATCC-T--AAG
gi|18 : caacTAAG-ACCA--TCCTAA--GACA-T-G-TCTTGAGCAATCCT-AAGGCACTTTCGAAAACCAgcactttcgaaaaccagga
gi|19 : caacttacatgttttaacagtCATGTCTT----ATGAC---TA-AA---GAATGTCATTTG-ACCA--TCCTAA--GACA-T-G-TTT----CAGTTCT-AAGACACTTTCGAAAACCAgga
gi|2 : AAAAATGAACAACATCTTTTGAAATCACCTTTAGTTTAATACATA-AGAA-TGAGAAACAAACAATTTTGATTTAATTTAGGAAAATAATGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTAT----AATCAAACAAA--CAAACAAATTTTAAAAAAAATTT------------AAAAAATCACCTTCAATT--GT-ATGATATTTAAAAAACGACCAATTATTATATGAT-----ATG------TGAGGTGAATAT-AAATAATTATT-TAAGACATCCCCCCCCCCTTCACAAT--GT-CAATTGAGAAGTAAGACAAA---T------GTTTTC-AACGAAAATAA--A---A---TCAAAATGAATACACCAATATTG-CTT-GTTG-TAAG--G-TT--TTGTTTT----ACGTACAT-TTATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----ACAT-G-TGAATAAAGACACGC---ATGAAT-GGA--------ATGCACATGTA----TAT--TGTT-ATA-C------TAGTATTGAG------GACAA--GT--------A------ATG-G------------TCCGCC-AAACGA----ATCCGTGCT---GATC----GATACGT-TTGTATAAAAGCAACGAAGAGTATTTTTTT--TTTGAAA-G----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-AGATAAT---GC-TACATGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCT----AACGTCGCAGG---TAACGCAGCTAAAA----ACGCT-T--GGTAAACTGTGTTCA--CGAATGGAAACGCTGTCAACGATACAGACCATGTTAAG-ACGGTGGAGGAAATCAGAAGAAAAAGTA-CCACATACATG-A-----ATAGCAC------AAAAAAGAGT--AAAATGACTTTTGTGACGTTCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TT-AG---GCATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-CCT----CAGTCCT-AAGATACTTTCGAAAACCAggg
gi|20 : ccAATGGGAAACAAATAATTTTGATTCAATTCTGGAAAATAATAGAAAAAT-----AAATCAATTATTTACAAACTAt
gi|22 : AAAGCAACGAGGAGCAGTGT---------AAT-G----TCAT-GCCACC--AAAT-CCAATTTTGCG--TGT
gi|23 : --GACA-T-G-TTT----CAGTCCT-AGGACACTTCCGAAAACCA
gi|3 : TATGA------ATG------TGGGGTGAAA-T-AGATAATTATAATAAGACATTTCCT-----TTCACAAA--AT-CATTTGAAAAAT---TCAA------------TTTTA-AACTAAAGTAATGA---A---CTGGAAACAATACACTAATACTGATTT-GTTGATAACTCGCTTAGGGTTTTT----A---ACA--T-ATGAT-TATCTATCCTTCTACTGTGTAATAATTGCTTGTT------CAA-GACAAATAAAAGCGCGT---ATGGATTGGG--------ATGCACTAGTG----CAT--T-TT-ATA------------ATCAAG------GTCAA--GTG-------AGGGCG-ATG-G------------GCTGAA-AAAT-A----AGCCGC-----------------ACGTGTTTTATAA---TTCCGA-----AATTATCTCGTGTGAAA-A----ACAT--TTATGAAAAAT-C--ATCCTATGAAAGTC--GGGAGCTTTGC-CGATATT---GC-TACAC-AAGTGGGAGAAAGATA------ACATTGT-CTGTTT-TCCGCTTCACT--------------TAACAC-GCTAAAAC---AAACT-ATGGAAAAACTATGTACAATCGAATT-AAACCATGTAAA-------------GTTAGACATGG-GAACTAAATCAGGAAGAAA--TATTCACGTGCATA-A-----GTAG---------AAAAAAggc
gi|4 : AATTCCGGGAAAAATAT------------AAATCATGAACTTCACTTTGGCCAAAAGATT---AAAATAAGCAATTATTATATGATTTAACATGCATTGTTAAAGTGAAAAGGAAATGATTATA-TAAGACATTTTCCCCC--T--GCAATTTGTTCATTTGAGA-GTAAGACAAAACAT-----TATTTTTTAACTAAAATAA--AT--AAATTTAAAATGAA--CTTCATTACTG-TTTTGTTAATAATGCC-TTAATTGGTTTCTTAATGTACAT-----GCAACATTTCTCCCTTT-CTAT----TACT-GCTTGTTT----TCATTG-TGAATAAAGACGCACTTTAGAATTTGGATTAGAATCGTATACATGTATGTACAT--TGTTTATATC------AAGGAT-GAGTAATGGGACAA--ATGGTTCGAAA------ATAAG------------CCCGCCCAAAC-ATTTTATCCGTGCT---TTTCCGGGGATA----TTGTATAAA
gi|5 : aaaaaaaaaatattaattatT---GC-TACACGGGGT-GGAAAAGAACA-----------------CTTAACCGCCTTACTAACACCA-AAGCTTTAACGTCGCAAAAATAAAAAGCTTG--GGGAAACTGTACTCA--CGAATTCAA-TGATGCCAACGATACAGACCATGTTAGG-GCGGTGGACGCATGCAGGAGGGAATGAA-CCAC--ACACG-A-----ATAGCAC------AAAAAAGATTTCACCATGAC-TCCATGGCAATCTTTCAACAAGCCTAAGACATGTTGC--------TTG-A-C-GTCCTT--AAG-----------------AAG-ATGA-ATC---CT-AAGTT-AGG-A-CTCAGTC-GAAAACAt
gi|6 : AACGCTGTAAACGATACAGACCATGTTAAG-ATGGTAGACGAAATCAGGAAGAAATAAA-CCACATGCATG-A-----ATAGCGCTAGCATGAGAAATATG--ATCATGACTTTCGAGACAATCT-AAGACCATCATGAGACATGTTGC--------TTG-A-C-GTCC-TTTAAGACCGAATCTTAT-CTT-AAG-ACGA-ATC---TT-AACTT-AGA-A-CTCAATA-GAAAACATGCTTT----ATGAC---TT-AA---GCATGCCCTAAG-ACCA--TACTAA--GATA-T-G-CCT----CAGTTCA-AAGACACTTTTGAAAACCA
gi|7 : GTGAAAGT-AAATAATTATA-TAAGAC--CCCCCTCC--TTCATA----GT-CATTTGAGAAGTGATTCAAA---CATTACTATTTTC-AACTAAAATAA--ATGAA---TGAAAATTAATATATCAATATCG-TTT-GTTAATAATTGC-TTAGTGGTTTT----TCA-ACAT---ATGCA-CATCTATCCCTTT-CTAT----TACATGCTTGTTTATAAATAT-G-TGAATAAAGAAGTGT---ATGG-TTGGA--------------ATGTA----CAT--TGTT-A-------------TATCAAG------GACAA--GT--------A------ATG-G------------g
gi|8 : ACATG-A-----ATAGCAC------ATAAAAGATT--ATCGTAACTTTCGTGACAATGTTAAGACCATCCTTAGACATGTTGT--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-CAG-ACGA-ATC---CT-AACAT-ATG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TT-AA---GCATGGCTTAAG-ACTA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACCTTCGAAAACCAgcaatggttaaaaaataagcccgc
gi|9 : AATAAAGACACGC---ATGATT-GGA--------ATGTA--TGTA----CAT--TGTT-ATA-CATGTACTAGTATTGAG------GACAA--GTA-------ATGGACAATG-GTTAAAAAATAATCCCGCC-AAAC-A-TTTGTCCGTGCT---GATC----GATACTT-TTGTATAAAAGCCACGAAGAGTAGTTTTTT--TTTAAAA-AAAAGTCAT-GCCATG--AAAT-CTAATCTTGTG--TGTCCAAGGAGggg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATGGTTAAAAAACAAGCCCGCCATTCATTTATCCATGGTTTTCCGAGCTATTGTAG
Alignments
lowQualScore : 1 1 1 33333 1 2222 111111 2222222 666666666666 11 1 222 11 222222222222222 11 1111 4444444444444 3333333333 22222 1111 22222222 2222 1111 222222 111 1 222222222 1111 333333333 111111 777777777777777777777777777777777 3333 22222222222 222222 22 111 33333333333333 111 2222 1111 11 11111 111111 11111111 1111 111
lowQualScore : 5 5 5 7 3 0 33333 7 3 1 4444 1 1 888888 1 3333333 1 1 888888888888 1 88 8 3 444 44 1 999999999999999 3 8 99 0 3 11 0 2222 8 1 0 3 1 0 6666666666666 8888888888 3 5 0 8 8 0 77 77777 5555 00000000 7777 8 1 8 7777 0 111111 8 8 111 7 5 555555555 2 4444 99 6 111111111 6 999999 99 222222222222222222222222222222222 8 8 4444 22222222222 1 8 1 6 1 999 3 222222 5 77 5 77 33 11 99 111 6 5 88888888888888 1 5 2 111 5 5555 8888 1 11 5 6 1 1 5 44444 444444 66 1 22 8888 2 0 0 88888888 5 5 5 9999 7 5 4 4 4 777 4 4 5 5 5 0000 888 333 5 0 4 66 55 4 4 4 8888 4
lowQualScore : . . . . . . ..... . . . .... . . ...... . ....... . . ............ . .. . . ... .. . ............... . . .. . . .. . .... . . . . . . ............. .......... . . . . . . .. ..... .... ........ .... . . . .... . ...... . . ... . . ......... . .... .. . ......... . ...... .. ................................. . . .... ........... . . . . . ... . ...... . .. . .. .. .. .. ... . . .............. . . . ... . .... .... . .. . . . . . ..... ...... .. . .. .... . . . ........ . . . .... . . . . . ... . . . . . .... ... ... . . . .. .. . . . .... .
lowQualScore : 5 5 5 3 7 7 33333 3 3 0 0000 0 0 777777 0 0000000 0 0 333333333333 0 33 3 3 333 00 0 000000000000000 8 0 44 8 2 00 8 8888 0 4 8 8 4 8 0000000000000 6666666666 2 0 8 0 0 8 00 00000 0000 22222222 4444 0 4 0 0000 8 666666 0 0 777 8 5 888888888 5 2222 22 7 777777777 3 222222 22 999999999999999999999999999999999 0 0 8888 88888888888 0 0 0 4 0 777 0 333333 7 99 7 99 22 22 44 777 7 7 00000000000000 0 7 5 777 6 0000 2222 0 00 0 7 0 7 7 33333 444444 99 1 44 1111 5 1 4 11111111 0 0 0 0000 0 0 4 4 4 888 4 4 0 0 0 6666 888 888 0 8 4 11 55 0 0 0 5555 0
consensus : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAA-CA--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TNAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
Reference ( family-4239 ) : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAACCA--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCAGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TCAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
gi|1 : AAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTTTAATGATA-CAATTATTT-CAAAATACGAAATATATTTTCAAAATAAAAGAAAACCA--AACCA--A----ACAAACAACCCCCTCCCCCCCAAAAAAAATCAGCTTCCATT--GCCTGA-GATTTTGAAAA-TGATCAATTAGTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATT-TTAGAAATTTTCCCCC--TTCACAAT--GT-AAATTGAGAAGTAAGACAAA----TAAT----ATTTTCAGCTAAAATAA--A---A---TCAAAATGAATATACAAATATTG-TTT-G----------G-TT---TGTTTT----ACGTACATGT-ATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----CCAT-G-TGAATAAAGACACGC---ATGATT-GGA--------ATGTACATGCA----CATGTTGTT-ATA-C------TAGTATTGAG------GACAATAGGC-------A------CTG-G------------TTC----AAAA-ATA--ATCC-CGCCAAAGATC----GAAACGT-TTGTATAAAAGCAACGAGGAGTATTTTTTT--TTT--AA-C----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-ACATATT---GC-TACATGAAGT-AGAAAAGAATA------AGACTTCACTCTTTAACCGCCTCACTAAC-CCGCAAG---TAACGCAGCTAAAA----AAGCT-A--TGTAAACTGTGTTCA--CGAATTGATACGCTGTCAACGATACAGACCACGTTAGG-ACGGTGGAGGAAATCCGAAGGAAAAGGACTACATACATG-A-----ATAGCAC------ATAAAAGATT--ACCATAACTTTCGTGACAATCTTAAGA-CATCCCTAAACATG-TGCCCCCCCCTTTGCA-C-CTCC-----AGAT--AATCTTATCCTT-AGG-ACGA-ATC---C--AACTT-AGG-A-CTCAATC-GAAAACAT-TCTT----ATGAC---TTAAG--G-CATGT-CTAAG-ACCA--TCCTAA--GACATT-G-TCT----CAG-CCT-AAGATAC-TTCGAAAAC
gi|10 : caaaccaTGCTCA--CGAATTGAAACACTGTCAACGATACAGACCATGTCAGG-GCAGTGGACGAAATCAGAAAGAAATGGACCACATACATACATGTATATAGCAC------AAAAAAGATT--ATCAT---T---------ATCTTAAGACCATCCTAAGACATGTAGT--------TTG-A-C-GTCC-T--AAGATTGAATCag
gi|11 : aaagaaaagaaaaaTTAT-CTTTAGG-ACAA-ATC---CT-AGCTT-AGGGA-CTCAATC-GAAA-CATGTCTTTTTCATGAC---TTTA---GACATGTCCGAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACTTTCGAAAAC
gi|12 : ct-AGG-ATGA-ATCTCCCT-AATTTTAGA-AATTCAATCCGAAAACATGTCTT----ATGGCCCTTTAAAGAG-CATGGCCAAAATACCAGATCCTAAAAGACA-T-GGCCT----CAGTCTT-AAGACATTTTCGAAagg
gi|13 : taTTTTT--ATTGAAACA----TCATTGCCACG--AAATATCAAAACAACG--TGTCTGAGGAGC-CTGCCGGATATTATCGCATACATGAAGT-AGAA--GAAT-----------------CTTTAGCCGCCTCACTAATACTACAAC---TAACGC
gi|14 : CTTAA-CTT-AGGCATGATCTC---CTCAACTT-AGA-A-TTCAATC-AAAAA---------------AC----TAA---A-CATGCCCAAAG-ACCA--TTCT-A--GACA-CGG-TCT----CAGTCTTGAAGACA
gi|15 : g------AAAATAGATT--ATCAAAACTT------CAA-------ACCATCCCAAGA-ATGTTGC--------TTG-G-C-GTCT-T--AAGATGGAATCTTAT-CTT-AGG-ATGA-GTC---CT-AACTT-Agt
gi|16 : AGT-GGAAAAGAATACTAGTAAGGCTTTACTCTTTAGCCGTCTCACTAACATCGCAAG---TAACGCAGCTAAAA----TAGCT-A--GGT
gi|17 : TTTTT--ATTGAAA-AA---TCAT-GCCATA--AAAT-CCAAACTTACG--TGTCCGAGGGG--CTGC-GGTTATT---GT-TGCACGAAGT-GGAAAA
gi|18 : gTT--AC-ATG--TTT--TAACAGT--TAAGACCATCCTAAGACATGT--C--------TTG-AGCAATCC-T--AAG
gi|18 : caacTAAG-ACCA--TCCTAA--GACA-T-G-TCTTGAGCAATCCT-AAGGCACTTTCGAAAACCAgcactttcgaaaaccagga
gi|19 : caacttacatgttttaacagtCATGTCTT----ATGAC---TAAA---G-AATGTCATTTG-ACCA--TCCTAA--GACA-T-G-TTT----CAGTTCT-AAGACACTTTCGAAAACCAgga
gi|2 : AAAAATGAACAACATCTTTTGAAATCACCTTTAGTTTAATACATA-AGAA-TGAGAAACAAACAATTTTGATTTAATTTAGGAAAATAATGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTAT----AATCAAACAAA--CA--AACAA--ATTTTAAAAAAAATTT------------AAAAAATCACCTTCAATT--GTATGA-TATTT-AAAAAACGACCAATTATTATATGAT-----ATG------TGAGGTGAATAT-AAATAATTATT-TAAGACATCCCCCCCCCCTTCACAAT--GT-CAATTGAGAAGTAAGACAAA----TG-T------TTTCAACGAAAATAA--A---A---TCAAAATGAATACACCAATATTG-CTT-GTTG-TAAG--G-TT--TTGTTTT----ACGTACAT-TTATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----ACAT-G-TGAATAAAGACACGC---ATGAAT-GGA--------ATGCACATGTA----TAT--TGTT-ATA-C------TAGTATTGAG------GACAA--GT--------A------ATG-G------------TCCGCC-AAACGA----ATCCGTGCT---GATC----GATACGT-TTGTATAAAAGCAACGAAGAGTATTTTTTT--TTTGAAA-G----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-AGATAAT---GC-TACATGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCT----AACGTCGCAGG---TAACGCAGCTAAAA----ACGCT-T--GGTAAACTGTGTTCA--CGAATGGAAACGCTGTCAACGATACAGACCATGTTAAG-ACGGTGGAGGAAATCAGAAGAAAAAGTACCACATACATG-A-----ATAGCAC------AAAAAAGAGT--AAAATGACTTTTGTGACGTTCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAG---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-CCT----CAGTCCT-AAGATACTTTCGAAAACCAggg
gi|20 : ccAATGGGAAACAAATAATTTTGATTCAATTCTGGAAAATAATAGAAAAAT-----AAATCAATTATTTACAAACTAt
gi|22 : AAAGCAACGAGGAGCAGTGT---------AAT-G----TCAT-GCCACC--AAAT-CCAATTTTGCG--TGT
gi|23 : --GACA-T-G-TTT----CAGTCCT-AGGACACTTCCGAAAACCA
gi|3 : TATGA------ATG------TGGGGTGAAA-T-AGATAATTATAATAAGACATTTCCT-----TTCACAAA--AT-CATTTGAAAAAT---TCA--------------ATTTTAAACTAAAGTAATGAA--C---TGGAAAC-AATACACTAATACTGATTT-GTTGATAACTCGCTTAGGGTTTTT----A---ACA--T-ATGAT-TATCTATCCTTCTACTGTGTAATAATTGCTTGTT------CAA-GACAAATAAAAGCGCGT---ATGGATTGGG--------ATGCACTAGTG----CAT--T-TT-ATA------------ATCAAG------GTCAA--GTG-------AGGGCG-ATG-G------------GCTGAA-AAAT-A----AGCCGC-----------------ACGTGTTTTATAA---TTCCGA-----AATTATCTCGTGTGAAA-A----ACAT--TTATGAAAAAT-C--ATCCTATGAAAGTC--GGGAGCTTTGC-CGATATT---GC-TACAC-AAGTGGGAGAAAGATA------ACATTGT-CTGTTT-TCCGCTTCACT--------------TAACAC-GCTAAAAC---AAACT-ATGGAAAAACTATGTACAATCGAATT-AAACCATGTAAA-------------GTTAGACATGG-GAACTAAATCAGGAAGAAATAT-TCACGTGCATA-A-----GTAG---------AAAAAAggc
gi|4 : AAAAAAAAATATTAATTATAATTCCGGGAAAAATAT------------AAATCATGAACTTCACTTTGGCCAAAAGATT---AAAA-TAAGCAATTATTATATGATTTAACATGCATTGTTAAAGTGAAAAGGAAATGATTATA-TAAGACATTTTCCCCC--T--GCAATTTGTTCATTTGAGA-GTAAGACAAAACATTA-T-----TTTTTAACTAAAATAA--AT--AAATTTAAAATGAA--CTTCATTACTG-TTTTGTTAATAATGCC-TTAATTGGTTTCTTAATGTACAT-----GCAACATTTCTCCCTTT-CTAT----TACT-GCTTGTTT----TCATTG-TGAATAAAGACGCACTTTAGAATTTGGATTAGAATCGTATACATGTATGTACAT--TGTTTATATC------AAGGAT-GAGTAATGGGACAA--ATGGTTCGAAA------ATAAG------------CCCGCCCAAAC-ATTTTATCCGTGCT---TTTCCGGGGATA----TTGTATAAA
gi|5 : aT---GC-TACACGGGGT-GGAAAAGAACA-----------------CTTAACCGCCTTACTAACACCA-AAGCTTTAACGTCGCAAAAATAAAAAGCTTG--GGGAAACTGTACTCA--CGAATTCAA-TGATGCCAACGATACAGACCATGTTAGG-GCGGTGGACGCATGCAGGAGGGAATGAACCAC--ACACG-A-----ATAGCAC------AAAAAAGATTTCACCATGAC-TCCATGGCAATCTTTCAACAAGCCTAAGACATGTTGC--------TTG-A-C-GTCCTT--AAG-----------------AAG-ATGA-ATC---CT-AAGTT-AGG-A-CTCAGTC-GAAAACAt
gi|6 : AACGCTGTAAACGATACAGACCATGTTAAG-ATGGTAGACGAAATCAGGAAGAAATAAACCACATGCATG-A-----ATAGCGCTAGCATGAGAAATATG--ATCATGACTTTCGAGACAATCT-AAGACCATCATGAGACATGTTGC--------TTG-A-C-GTCC-TTTAAGACCGAATCTTAT-CTT-AAG-ACGA-ATC---TT-AACTT-AGA-A-CTCAATA-GAAAACATGCTTT----ATGAC---TTAA---G-CATGCCCTAAG-ACCA--TACTAA--GATA-T-G-CCT----CAGTTCA-AAGACACTTTTGAAAACCA
gi|7 : GTGAAAGT-AAATAATTATA-TAAGAC--CCCCCTCC--TTCATA----GT-CATTTGAGAAGTGATTCAAA----CA-TTACTATTTTCAACTAAAATAA--ATGAA---TGAAAATTAATATATCAATATCG-TTT-GTTAATAATTGC-TTAGTGGTTTT----TCA-ACAT---ATGCA-CATCTATCCCTTT-CTAT----TACATGCTTGTTTATAAATAT-G-TGAATAAAGAAGTGT---ATGG-TTGGA--------------ATGTA----CAT--TGTT-A-------------TATCAAG------GACAA--GT--------A------ATG-G------------g
gi|8 : ACATG-A-----ATAGCAC------ATAAAAGATT--ATCGTAACTTTCGTGACAATGTTAAGACCATCCTTAGACATGTTGT--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-CAG-ACGA-ATC---CT-AACAT-ATG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGGCTTAAG-ACTA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACCTTCGAAAACCAgcaatggttaaaaaataagcccgc
gi|9 : AATAAAGACACGC---ATGATT-GGA--------ATGTA--TGTA----CAT--TGTT-ATA-CATGTACTAGTATTGAG------GACAA--GTA-------ATGGACAATG-GTTAAAAAATAATCCCGCC-AAAC-ATTT-GTCCGTGCT---GATC----GATACTT-TTGTATAAAAGCCACGAAGAGTAGTTTTTT--TTTAAAA-AAAAGTCAT-GCCATG--AAAT-CTAATCTTGTG--TGTCCAAGGAGggg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATGGTTAAAAAACAAGCCCGCCATTCATTTATCCATGGTTTTCCGAGCTATTGTAG
Alignments
lowQualScore : 1 1 1 33333 1 2222 222222 2222222 666666666666 11 1 222 11 222222222222222 11 1111 4444444444444 3333333333 22222 1111 22222222 2222 1111 222222 111 1 222222222 1111 333333333 111111 777777777777777777777777777777777 3333 22222222222 222222 22 111 33333333333333 111 2222 1111 11 11111 111111 11111111 1111 111
lowQualScore : 5 5 5 7 3 0 33333 7 3 1 4444 1 1 555555 1 3333333 1 1 888888888888 1 88 3 444 44 1 999999999999999 3 8 99 0 3 11 0 2222 8 1 0 3 1 0 6666666666666 8888888888 1 5 0 8 8 0 77 77777 5555 00000000 7777 8 1 8 7777 0 111111 8 8 111 7 5 555555555 2 4444 99 6 111111111 6 999999 99 222222222222222222222222222222222 8 8 4444 22222222222 1 8 1 6 1 999 3 222222 5 77 5 77 33 11 99 111 6 5 88888888888888 1 5 2 111 5 5555 8888 1 11 5 6 1 1 5 44444 444444 66 1 22 8888 2 0 0 88888888 5 5 5 9999 7 5 4 4 4 777 4 4 5 5 5 0000 888 333 5 0 4 66 55 4 4 4 8888 4
lowQualScore : . . . . . . ..... . . . .... . . ...... . ....... . . ............ . .. . ... .. . ............... . . .. . . .. . .... . . . . . . ............. .......... . . . . . . .. ..... .... ........ .... . . . .... . ...... . . ... . . ......... . .... .. . ......... . ...... .. ................................. . . .... ........... . . . . . ... . ...... . .. . .. .. .. .. ... . . .............. . . . ... . .... .... . .. . . . . . ..... ...... .. . .. .... . . . ........ . . . .... . . . . . ... . . . . . .... ... ... . . . .. .. . . . .... .
lowQualScore : 5 5 5 3 7 7 33333 3 3 0 0000 0 0 333333 0 0000000 0 0 333333333333 0 33 3 333 00 0 000000000000000 8 0 44 8 2 00 8 8888 0 4 8 8 4 8 0000000000000 6666666666 0 0 8 0 0 8 00 00000 0000 22222222 4444 0 4 0 0000 8 666666 0 0 777 8 5 888888888 5 2222 22 7 777777777 3 222222 22 999999999999999999999999999999999 0 0 8888 88888888888 0 0 0 4 0 777 0 333333 7 99 7 99 22 22 44 777 7 7 00000000000000 0 7 5 777 6 0000 2222 0 00 0 7 0 7 7 33333 444444 99 1 44 1111 5 1 4 11111111 0 0 0 0000 0 0 4 4 4 888 4 4 0 0 0 6666 888 888 0 8 4 11 55 0 0 0 5555 0
consensus : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TNAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
Reference ( family-4239 ) : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TNAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
gi|1 : AAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTTTAATGATA-CAATTATTT-CAAAATACGAAATATATTTTCAAAATAAAAGAAAACCA--AACCA--A----ACAAACAACCCCCTCCCCCCCAAAAAAAATCAGCTTCCATT--GCCTGA-GATTTTGAAAA-TGATCAATTAGTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATT-TTAGAAATTTTCCCCC--TTCACAAT--GT-AAATTGAGAAGTAAGACAAA----TAAT----ATTTTCAGCTAAAATAA--A---A---TCAAAATGAATATACAAATATTG-TTT-G----------G-TT---TGTTTT----ACGTACATGT-ATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----CCAT-G-TGAATAAAGACACGC---ATGATT-GGA--------ATGTACATGCA----CATGTTGTT-ATA-C------TAGTATTGAG------GACAATAGGC-------A------CTG-G------------TTC----AAAA-ATA--ATCC-CGCCAAAGATC----GAAACGT-TTGTATAAAAGCAACGAGGAGTATTTTTTT--TTT--AA-C----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-ACATATT---GC-TACATGAAGT-AGAAAAGAATA------AGACTTCACTCTTTAACCGCCTCACTAAC-CCGCAAG---TAACGCAGCTAAAA----AAGCT-A--TGTAAACTGTGTTCA--CGAATTGATACGCTGTCAACGATACAGACCACGTTAGG-ACGGTGGAGGAAATCCGAAGGAAAAGGACTACATACATG-A-----ATAGCAC------ATAAAAGATT--ACCATAACTTTCGTGACAATCTTAAGA-CATCCCTAAACATG-TGCCCCCCCCTTTGCA-C-CTCC-----AGAT--AATCTTATCCTT-AGG-ACGA-ATC---C--AACTT-AGG-A-CTCAATC-GAAAACAT-TCTT----ATGAC---TTAAG--G-CATGT-CTAAG-ACCA--TCCTAA--GACATT-G-TCT----CAG-CCT-AAGATAC-TTCGAAAAC
gi|10 : caaaccaTGCTCA--CGAATTGAAACACTGTCAACGATACAGACCATGTCAGG-GCAGTGGACGAAATCAGAAAGAAATGGACCACATACATACATGTATATAGCAC------AAAAAAGATT--ATCAT---T---------ATCTTAAGACCATCCTAAGACATGTAGT--------TTG-A-C-GTCC-T--AAGATTGAATCag
gi|11 : aaagaaaagaaaaaTTAT-CTTTAGG-ACAA-ATC---CT-AGCTT-AGGGA-CTCAATC-GAAA-CATGTCTTTTTCATGAC---TTTA---GACATGTCCGAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACTTTCGAAAAC
gi|12 : ct-AGG-ATGA-ATCTCCCT-AATTTTAGA-AATTCAATCCGAAAACATGTCTT----ATGGCCCTTTAAAGAG-CATGGCCAAAATACCAGATCCTAAAAGACA-T-GGCCT----CAGTCTT-AAGACATTTTCGAAagg
gi|13 : taTTTTT--ATTGAAACA----TCATTGCCACG--AAATATCAAAACAACG--TGTCTGAGGAGC-CTGCCGGATATTATCGCATACATGAAGT-AGAA--GAAT-----------------CTTTAGCCGCCTCACTAATACTACAAC---TAACGC
gi|14 : CTTAA-CTT-AGGCATGATCTC---CTCAACTT-AGA-A-TTCAATC-AAAAA---------------AC----TAA---A-CATGCCCAAAG-ACCA--TTCT-A--GACA-CGG-TCT----CAGTCTTGAAGACA
gi|15 : g------AAAATAGATT--ATCAAAACTT------CAA-------ACCATCCCAAGA-ATGTTGC--------TTG-G-C-GTCT-T--AAGATGGAATCTTAT-CTT-AGG-ATGA-GTC---CT-AACTT-Agt
gi|16 : AGT-GGAAAAGAATACTAGTAAGGCTTTACTCTTTAGCCGTCTCACTAACATCGCAAG---TAACGCAGCTAAAA----TAGCT-A--GGT
gi|17 : TTTTT--ATTGAAA-AA---TCAT-GCCATA--AAAT-CCAAACTTACG--TGTCCGAGGGG--CTGC-GGTTATT---GT-TGCACGAAGT-GGAAAA
gi|18 : gTT--AC-ATG--TTT--TAACAGT--TAAGACCATCCTAAGACATGT--C--------TTG-AGCAATCC-T--AAG
gi|18 : caacTAAG-ACCA--TCCTAA--GACA-T-G-TCTTGAGCAATCCT-AAGGCACTTTCGAAAACCAgcactttcgaaaaccagga
gi|19 : caacttacatgttttaacagtCATGTCTT----ATGAC---TAAA---G-AATGTCATTTG-ACCA--TCCTAA--GACA-T-G-TTT----CAGTTCT-AAGACACTTTCGAAAACCAgga
gi|2 : AAAAATGAACAACATCTTTTGAAATCACCTTTAGTTTAATACATA-AGAA-TGAGAAACAAACAATTTTGATTTAATTTAGGAAAATAATGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTAT----AATCAAACAAA-C-A--AACAA--ATTTTAAAAAAAATTT------------AAAAAATCACCTTCAATT--GTATGA-TATTT-AAAAAACGACCAATTATTATATGAT-----ATG------TGAGGTGAATAT-AAATAATTATT-TAAGACATCCCCCCCCCCTTCACAAT--GT-CAATTGAGAAGTAAGACAAA----TG-T------TTTCAACGAAAATAA--A---A---TCAAAATGAATACACCAATATTG-CTT-GTTG-TAAG--G-TT--TTGTTTT----ACGTACAT-TTATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----ACAT-G-TGAATAAAGACACGC---ATGAAT-GGA--------ATGCACATGTA----TAT--TGTT-ATA-C------TAGTATTGAG------GACAA--GT--------A------ATG-G------------TCCGCC-AAACGA----ATCCGTGCT---GATC----GATACGT-TTGTATAAAAGCAACGAAGAGTATTTTTTT--TTTGAAA-G----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-AGATAAT---GC-TACATGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCT----AACGTCGCAGG---TAACGCAGCTAAAA----ACGCT-T--GGTAAACTGTGTTCA--CGAATGGAAACGCTGTCAACGATACAGACCATGTTAAG-ACGGTGGAGGAAATCAGAAGAAAAAGTACCACATACATG-A-----ATAGCAC------AAAAAAGAGT--AAAATGACTTTTGTGACGTTCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAG---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-CCT----CAGTCCT-AAGATACTTTCGAAAACCAggg
gi|20 : ccAATGGGAAACAAATAATTTTGATTCAATTCTGGAAAATAATAGAAAAAT-----AAATCAATTATTTACAAACTAt
gi|22 : AAAGCAACGAGGAGCAGTGT---------AAT-G----TCAT-GCCACC--AAAT-CCAATTTTGCG--TGT
gi|23 : --GACA-T-G-TTT----CAGTCCT-AGGACACTTCCGAAAACCA
gi|3 : TATGA------ATG------TGGGGTGAAA-T-AGATAATTATAATAAGACATTTCCT-----TTCACAAA--AT-CATTTGAAAAAT---TCA--------------ATTTTAAACTAAAGTAATGAA--C---TGGAAAC-AATACACTAATACTGATTT-GTTGATAACTCGCTTAGGGTTTTT----A---ACA--T-ATGAT-TATCTATCCTTCTACTGTGTAATAATTGCTTGTT------CAA-GACAAATAAAAGCGCGT---ATGGATTGGG--------ATGCACTAGTG----CAT--T-TT-ATA------------ATCAAG------GTCAA--GTG-------AGGGCG-ATG-G------------GCTGAA-AAAT-A----AGCCGC-----------------ACGTGTTTTATAA---TTCCGA-----AATTATCTCGTGTGAAA-A----ACAT--TTATGAAAAAT-C--ATCCTATGAAAGTC--GGGAGCTTTGC-CGATATT---GC-TACAC-AAGTGGGAGAAAGATA------ACATTGT-CTGTTT-TCCGCTTCACT--------------TAACAC-GCTAAAAC---AAACT-ATGGAAAAACTATGTACAATCGAATT-AAACCATGTAAA-------------GTTAGACATGG-GAACTAAATCAGGAAGAAATAT-TCACGTGCATA-A-----GTAG---------AAAAAAggc
gi|4 : AAAAAAAAT-ATTAATTATAATTCCGGGAAAAATAT------------AAATCATGAACTTCACTTTGGCCAAAAGATT---AAAA-TAAGCAATTATTATATGATTTAACATGCATTGTTAAAGTGAAAAGGAAATGATTATA-TAAGACATTTTCCCCC--T--GCAATTTGTTCATTTGAGA-GTAAGACAAAACATTA-T-----TTTTTAACTAAAATAA--AT--AAATTTAAAATGAA--CTTCATTACTG-TTTTGTTAATAATGCC-TTAATTGGTTTCTTAATGTACAT-----GCAACATTTCTCCCTTT-CTAT----TACT-GCTTGTTT----TCATTG-TGAATAAAGACGCACTTTAGAATTTGGATTAGAATCGTATACATGTATGTACAT--TGTTTATATC------AAGGAT-GAGTAATGGGACAA--ATGGTTCGAAA------ATAAG------------CCCGCCCAAAC-ATTTTATCCGTGCT---TTTCCGGGGATA----TTGTATAAA
gi|5 : aaT---GC-TACACGGGGT-GGAAAAGAACA-----------------CTTAACCGCCTTACTAACACCA-AAGCTTTAACGTCGCAAAAATAAAAAGCTTG--GGGAAACTGTACTCA--CGAATTCAA-TGATGCCAACGATACAGACCATGTTAGG-GCGGTGGACGCATGCAGGAGGGAATGAACCAC--ACACG-A-----ATAGCAC------AAAAAAGATTTCACCATGAC-TCCATGGCAATCTTTCAACAAGCCTAAGACATGTTGC--------TTG-A-C-GTCCTT--AAG-----------------AAG-ATGA-ATC---CT-AAGTT-AGG-A-CTCAGTC-GAAAACAt
gi|6 : AACGCTGTAAACGATACAGACCATGTTAAG-ATGGTAGACGAAATCAGGAAGAAATAAACCACATGCATG-A-----ATAGCGCTAGCATGAGAAATATG--ATCATGACTTTCGAGACAATCT-AAGACCATCATGAGACATGTTGC--------TTG-A-C-GTCC-TTTAAGACCGAATCTTAT-CTT-AAG-ACGA-ATC---TT-AACTT-AGA-A-CTCAATA-GAAAACATGCTTT----ATGAC---TTAA---G-CATGCCCTAAG-ACCA--TACTAA--GATA-T-G-CCT----CAGTTCA-AAGACACTTTTGAAAACCA
gi|7 : GTGAAAGT-AAATAATTATA-TAAGAC--CCCCCTCC--TTCATA----GT-CATTTGAGAAGTGATTCAAA----CA-TTACTATTTTCAACTAAAATAA--ATGAA---TGAAAATTAATATATCAATATCG-TTT-GTTAATAATTGC-TTAGTGGTTTT----TCA-ACAT---ATGCA-CATCTATCCCTTT-CTAT----TACATGCTTGTTTATAAATAT-G-TGAATAAAGAAGTGT---ATGG-TTGGA--------------ATGTA----CAT--TGTT-A-------------TATCAAG------GACAA--GT--------A------ATG-G------------g
gi|8 : ACATG-A-----ATAGCAC------ATAAAAGATT--ATCGTAACTTTCGTGACAATGTTAAGACCATCCTTAGACATGTTGT--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-CAG-ACGA-ATC---CT-AACAT-ATG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGGCTTAAG-ACTA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACCTTCGAAAACCAgcaatggttaaaaaataagcccgc
gi|9 : AATAAAGACACGC---ATGATT-GGA--------ATGTA--TGTA----CAT--TGTT-ATA-CATGTACTAGTATTGAG------GACAA--GTA-------ATGGACAATG-GTTAAAAAATAATCCCGCC-AAAC-ATTT-GTCCGTGCT---GATC----GATACTT-TTGTATAAAAGCCACGAAGAGTAGTTTTTT--TTTAAAA-AAAAGTCAT-GCCATG--AAAT-CTAATCTTGTG--TGTCCAAGGAGggg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATGGTTAAAAAACAAGCCCGCCATTCATTTATCCATGGTTTTCCGAGCTATTGTAG
Alignments
lowQualScore : 1 1 1 33333 1 2222 222222 2222222 666666666666 11 1 222 11 222222222222222 11 1111 4444444444444 3333333333 22222 1111 22222222 2222 1111 222222 111 1 222222222 1111 333333333 111111 777777777777777777777777777777777 3333 22222222222 222222 22 111 33333333333333 111 2222 1111 11 11111 111111 11111111 1111 111
lowQualScore : 5 5 5 7 3 0 33333 7 3 1 4444 1 1 555555 1 3333333 1 1 888888888888 1 88 3 444 44 1 999999999999999 3 8 99 0 3 11 0 2222 8 1 0 3 1 0 6666666666666 8888888888 1 5 0 8 8 0 77 77777 5555 00000000 7777 8 1 8 7777 0 111111 8 8 111 7 5 555555555 2 4444 99 6 111111111 6 999999 99 222222222222222222222222222222222 8 8 4444 22222222222 1 8 1 6 1 999 3 222222 5 77 5 77 33 11 99 111 6 5 88888888888888 1 5 2 111 5 5555 8888 1 11 5 6 1 1 5 44444 444444 66 1 22 8888 2 0 0 88888888 5 5 5 9999 7 5 4 4 4 777 4 4 5 5 5 0000 888 333 5 0 4 66 55 4 4 4 8888 4
lowQualScore : . . . . . . ..... . . . .... . . ...... . ....... . . ............ . .. . ... .. . ............... . . .. . . .. . .... . . . . . . ............. .......... . . . . . . .. ..... .... ........ .... . . . .... . ...... . . ... . . ......... . .... .. . ......... . ...... .. ................................. . . .... ........... . . . . . ... . ...... . .. . .. .. .. .. ... . . .............. . . . ... . .... .... . .. . . . . . ..... ...... .. . .. .... . . . ........ . . . .... . . . . . ... . . . . . .... ... ... . . . .. .. . . . .... .
lowQualScore : 5 5 5 3 7 7 33333 3 3 0 0000 0 0 333333 0 0000000 0 0 333333333333 0 33 3 333 00 0 000000000000000 8 0 44 8 2 00 8 8888 0 4 8 8 4 8 0000000000000 6666666666 0 0 8 0 0 8 00 00000 0000 22222222 4444 0 4 0 0000 8 666666 0 0 777 8 5 888888888 5 2222 22 7 777777777 3 222222 22 999999999999999999999999999999999 0 0 8888 88888888888 0 0 0 4 0 777 0 333333 7 99 7 99 22 22 44 777 7 7 00000000000000 0 7 5 777 6 0000 2222 0 00 0 7 0 7 7 33333 444444 99 1 44 1111 5 1 4 11111111 0 0 0 0000 0 0 4 4 4 888 4 4 0 0 0 6666 888 888 0 8 4 11 55 0 0 0 5555 0
consensus : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TNAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
Reference ( family-4239 ) : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TNAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
gi|1 : AAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTTTAATGATA-CAATTATTT-CAAAATACGAAATATATTTTCAAAATAAAAGAAAACCA--AACCA--A----ACAAACAACCCCCTCCCCCCCAAAAAAAATCAGCTTCCATT--GCCTGA-GATTTTGAAAA-TGATCAATTAGTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATT-TTAGAAATTTTCCCCC--TTCACAAT--GT-AAATTGAGAAGTAAGACAAA----TAAT----ATTTTCAGCTAAAATAA--A---A---TCAAAATGAATATACAAATATTG-TTT-G----------G-TT---TGTTTT----ACGTACATGT-ATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----CCAT-G-TGAATAAAGACACGC---ATGATT-GGA--------ATGTACATGCA----CATGTTGTT-ATA-C------TAGTATTGAG------GACAATAGGC-------A------CTG-G------------TTC----AAAA-ATA--ATCC-CGCCAAAGATC----GAAACGT-TTGTATAAAAGCAACGAGGAGTATTTTTTT--TTT--AA-C----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-ACATATT---GC-TACATGAAGT-AGAAAAGAATA------AGACTTCACTCTTTAACCGCCTCACTAAC-CCGCAAG---TAACGCAGCTAAAA----AAGCT-A--TGTAAACTGTGTTCA--CGAATTGATACGCTGTCAACGATACAGACCACGTTAGG-ACGGTGGAGGAAATCCGAAGGAAAAGGACTACATACATG-A-----ATAGCAC------ATAAAAGATT--ACCATAACTTTCGTGACAATCTTAAGA-CATCCCTAAACATG-TGCCCCCCCCTTTGCA-C-CTCC-----AGAT--AATCTTATCCTT-AGG-ACGA-ATC---C--AACTT-AGG-A-CTCAATC-GAAAACAT-TCTT----ATGAC---TTAAG--G-CATGT-CTAAG-ACCA--TCCTAA--GACATT-G-TCT----CAG-CCT-AAGATAC-TTCGAAAAC
gi|10 : caaaccaTGCTCA--CGAATTGAAACACTGTCAACGATACAGACCATGTCAGG-GCAGTGGACGAAATCAGAAAGAAATGGACCACATACATACATGTATATAGCAC------AAAAAAGATT--ATCAT---T---------ATCTTAAGACCATCCTAAGACATGTAGT--------TTG-A-C-GTCC-T--AAGATTGAATCag
gi|11 : aaagaaaagaaaaaTTAT-CTTTAGG-ACAA-ATC---CT-AGCTT-AGGGA-CTCAATC-GAAA-CATGTCTTTTTCATGAC---TTTA---GACATGTCCGAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACTTTCGAAAAC
gi|12 : ct-AGG-ATGA-ATCTCCCT-AATTTTAGA-AATTCAATCCGAAAACATGTCTT----ATGGCCCTTTAAAGAG-CATGGCCAAAATACCAGATCCTAAAAGACA-T-GGCCT----CAGTCTT-AAGACATTTTCGAAagg
gi|13 : taTTTTT--ATTGAAACA----TCATTGCCACG--AAATATCAAAACAACG--TGTCTGAGGAGC-CTGCCGGATATTATCGCATACATGAAGT-AGAA--GAAT-----------------CTTTAGCCGCCTCACTAATACTACAAC---TAACGC
gi|14 : CTTAA-CTT-AGGCATGATCTC---CTCAACTT-AGA-A-TTCAATC-AAAAA---------------AC----TAA---A-CATGCCCAAAG-ACCA--TTCT-A--GACA-CGG-TCT----CAGTCTTGAAGACA
gi|15 : g------AAAATAGATT--ATCAAAACTT------CAA-------ACCATCCCAAGA-ATGTTGC--------TTG-G-C-GTCT-T--AAGATGGAATCTTAT-CTT-AGG-ATGA-GTC---CT-AACTT-Agt
gi|16 : AGT-GGAAAAGAATACTAGTAAGGCTTTACTCTTTAGCCGTCTCACTAACATCGCAAG---TAACGCAGCTAAAA----TAGCT-A--GGT
gi|17 : TTTTT--ATTGAAA-AA---TCAT-GCCATA--AAAT-CCAAACTTACG--TGTCCGAGGGG--CTGC-GGTTATT---GT-TGCACGAAGT-GGAAAA
gi|18 : gTT--AC-ATG--TTT--TAACAGT--TAAGACCATCCTAAGACATGT--C--------TTG-AGCAATCC-T--AAG
gi|18 : caacTAAG-ACCA--TCCTAA--GACA-T-G-TCTTGAGCAATCCT-AAGGCACTTTCGAAAACCAgcactttcgaaaaccagga
gi|19 : caacttacatgttttaacagtCATGTCTT----ATGAC---TAAA---G-AATGTCATTTG-ACCA--TCCTAA--GACA-T-G-TTT----CAGTTCT-AAGACACTTTCGAAAACCAgga
gi|2 : AAAAATGAACAACATCTTTTGAAATCACCTTTAGTTTAATACATA-AGAA-TGAGAAACAAACAATTTTGATTTAATTTAGGAAAATAATGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTAT----AATCAAACAAA-C-A--AACAA--ATTTTAAAAAAAATTT------------AAAAAATCACCTTCAATT--GTATGA-TATTT-AAAAAACGACCAATTATTATATGAT-----ATG------TGAGGTGAATAT-AAATAATTATT-TAAGACATCCCCCCCCCCTTCACAAT--GT-CAATTGAGAAGTAAGACAAA----TG-T------TTTCAACGAAAATAA--A---A---TCAAAATGAATACACCAATATTG-CTT-GTTG-TAAG--G-TT--TTGTTTT----ACGTACAT-TTATGCA-CATCAATTCTTTT-CTAT----TACTTGCTTGTTT----ACAT-G-TGAATAAAGACACGC---ATGAAT-GGA--------ATGCACATGTA----TAT--TGTT-ATA-C------TAGTATTGAG------GACAA--GT--------A------ATG-G------------TCCGCC-AAACGA----ATCCGTGCT---GATC----GATACGT-TTGTATAAAAGCAACGAAGAGTATTTTTTT--TTTGAAA-G----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-AGATAAT---GC-TACATGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCT----AACGTCGCAGG---TAACGCAGCTAAAA----ACGCT-T--GGTAAACTGTGTTCA--CGAATGGAAACGCTGTCAACGATACAGACCATGTTAAG-ACGGTGGAGGAAATCAGAAGAAAAAGTACCACATACATG-A-----ATAGCAC------AAAAAAGAGT--AAAATGACTTTTGTGACGTTCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAG---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-CCT----CAGTCCT-AAGATACTTTCGAAAACCAggg
gi|20 : ccAATGGGAAACAAATAATTTTGATTCAATTCTGGAAAATAATAGAAAAAT-----AAATCAATTATTTACAAACTAt
gi|22 : AAAGCAACGAGGAGCAGTGT---------AAT-G----TCAT-GCCACC--AAAT-CCAATTTTGCG--TGT
gi|23 : --GACA-T-G-TTT----CAGTCCT-AGGACACTTCCGAAAACCA
gi|3 : TATGA------ATG------TGGGGTGAAA-T-AGATAATTATAATAAGACATTTCCT-----TTCACAAA--AT-CATTTGAAAAAT---TCA--------------ATTTTAAACTAAAGTAATGAA--C---TGGAAAC-AATACACTAATACTGATTT-GTTGATAACTCGCTTAGGGTTTTT----A---ACA--T-ATGAT-TATCTATCCTTCTACTGTGTAATAATTGCTTGTT------CAA-GACAAATAAAAGCGCGT---ATGGATTGGG--------ATGCACTAGTG----CAT--T-TT-ATA------------ATCAAG------GTCAA--GTG-------AGGGCG-ATG-G------------GCTGAA-AAAT-A----AGCCGC-----------------ACGTGTTTTATAA---TTCCGA-----AATTATCTCGTGTGAAA-A----ACAT--TTATGAAAAAT-C--ATCCTATGAAAGTC--GGGAGCTTTGC-CGATATT---GC-TACAC-AAGTGGGAGAAAGATA------ACATTGT-CTGTTT-TCCGCTTCACT--------------TAACAC-GCTAAAAC---AAACT-ATGGAAAAACTATGTACAATCGAATT-AAACCATGTAAA-------------GTTAGACATGG-GAACTAAATCAGGAAGAAATAT-TCACGTGCATA-A-----GTAG---------AAAAAAggc
gi|4 : AAAAAAAAT-ATTAATTATAATTCCGGGAAAAATAT------------AAATCATGAACTTCACTTTGGCCAAAAGATT---AAAA-TAAGCAATTATTATATGATTTAACATGCATTGTTAAAGTGAAAAGGAAATGATTATA-TAAGACATTTTCCCCC--T--GCAATTTGTTCATTTGAGA-GTAAGACAAAACATTA-T-----TTTTTAACTAAAATAA--AT--AAATTTAAAATGAA--CTTCATTACTG-TTTTGTTAATAATGCC-TTAATTGGTTTCTTAATGTACAT-----GCAACATTTCTCCCTTT-CTAT----TACT-GCTTGTTT----TCATTG-TGAATAAAGACGCACTTTAGAATTTGGATTAGAATCGTATACATGTATGTACAT--TGTTTATATC------AAGGAT-GAGTAATGGGACAA--ATGGTTCGAAA------ATAAG------------CCCGCCCAAAC-ATTTTATCCGTGCT---TTTCCGGGGATA----TTGTATAAA
gi|5 : aaT---GC-TACACGGGGT-GGAAAAGAACA-----------------CTTAACCGCCTTACTAACACCA-AAGCTTTAACGTCGCAAAAATAAAAAGCTTG--GGGAAACTGTACTCA--CGAATTCAA-TGATGCCAACGATACAGACCATGTTAGG-GCGGTGGACGCATGCAGGAGGGAATGAACCAC--ACACG-A-----ATAGCAC------AAAAAAGATTTCACCATGAC-TCCATGGCAATCTTTCAACAAGCCTAAGACATGTTGC--------TTG-A-C-GTCCTT--AAG-----------------AAG-ATGA-ATC---CT-AAGTT-AGG-A-CTCAGTC-GAAAACAt
gi|6 : AACGCTGTAAACGATACAGACCATGTTAAG-ATGGTAGACGAAATCAGGAAGAAATAAACCACATGCATG-A-----ATAGCGCTAGCATGAGAAATATG--ATCATGACTTTCGAGACAATCT-AAGACCATCATGAGACATGTTGC--------TTG-A-C-GTCC-TTTAAGACCGAATCTTAT-CTT-AAG-ACGA-ATC---TT-AACTT-AGA-A-CTCAATA-GAAAACATGCTTT----ATGAC---TTAA---G-CATGCCCTAAG-ACCA--TACTAA--GATA-T-G-CCT----CAGTTCA-AAGACACTTTTGAAAACCA
gi|7 : GTGAAAGT-AAATAATTATA-TAAGAC--CCCCCTCC--TTCATA----GT-CATTTGAGAAGTGATTCAAA----CA-TTACTATTTTCAACTAAAATAA--ATGAA---TGAAAATTAATATATCAATATCG-TTT-GTTAATAATTGC-TTAGTGGTTTT----TCA-ACAT---ATGCA-CATCTATCCCTTT-CTAT----TACATGCTTGTTTATAAATAT-G-TGAATAAAGAAGTGT---ATGG-TTGGA--------------ATGTA----CAT--TGTT-A-------------TATCAAG------GACAA--GT--------A------ATG-G------------g
gi|8 : ACATG-A-----ATAGCAC------ATAAAAGATT--ATCGTAACTTTCGTGACAATGTTAAGACCATCCTTAGACATGTTGT--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-CAG-ACGA-ATC---CT-AACAT-ATG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGGCTTAAG-ACTA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACCTTCGAAAACCAgcaatggttaaaaaataagcccgc
gi|9 : AATAAAGACACGC---ATGATT-GGA--------ATGTA--TGTA----CAT--TGTT-ATA-CATGTACTAGTATTGAG------GACAA--GTA-------ATGGACAATG-GTTAAAAAATAATCCCGCC-AAAC-ATTT-GTCCGTGCT---GATC----GATACTT-TTGTATAAAAGCCACGAAGAGTAGTTTTTT--TTTAAAA-AAAAGTCAT-GCCATG--AAAT-CTAATCTTGTG--TGTCCAAGGAGggg
blockSeqs : A A . A A . T A A . C C ATATT A TAATTCC A T . C TG A TA AC C TTTAACATGCATTGT A G AA C CC ATTT T A A A CATTACTA ATAAAT C G A T GA CTCGC AGGG CTTAATGT TTT A A A GTAA TATAAA T A TTT A T TTAGAATCG C TGTA . T CATGTACT T TAATGG . AATGGACAATGGTTAAAAAATAATC C G TTTT TTTCCGGG T G A A T CGT G AAAAG T AA A AA TG TT CG ATC A G CTAGTAAGGCTTTA C A C CTT A TAAA ATG T AT G C G A C TGTAT TAGCAT TC T AA TTGT C . . G A TTT T . T C T TCC C T G A C TTTC CCT AGA A T GA AA . G G TGAG G
blockSeqs : . T . T . A CA T ATTTT G A . A . . . T G TATG A . T C . AT . T A T ACATTAT TGAAC G G . . AA TGCC AATT ACGT T . T . . TA . . . A T A C . . . TCA C . . GGTTCGAAAATAAGC . . TTT GATC T . A G G A G CA . . . . CG C G . . . AGACTTTA C A C . A C TG T . G . T A . . . . T GA CCAT C . . . . TT G . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : ATG G . A T . AA . T G A TGT ATGAA T T . . AA TTGC AGTG TCA T . T . . TT . . . T T A C . . . CT C . . GAGGGCGATGGG . . . GATC T . T A A A G AA . . . . CA C A . . . ACATTGT C G C . C . A A . C . T G . . . . C GA TCGA C . . . . T T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A . . . . T . T A AA G . . . G GG TT A T . T . . . . . . T . A . . . . . T . . AATGGT . . . . . . C . G T G G . . . . CA . C . . . . T A . . . . T G . . . A A . . . . A GA TCGT C . . . . T C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T A G . . . . . . . . . . . . . . A . . . . . C AA TT G . . . . T T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . T G . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : TGC********** ATGAAC**** AA CGC** AGTG ACG***** T*** ** C******** ** GGGAAATGGGC********************** **** TC********* C* AGCTT********* ******** T*** ***
originalCons : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAA----TA-T----ATTTTCAACTAAAATAA--AT--A---TNAAAATGAATACACCAATATTG-TTT-GTTGATAATTCG-TTAGTTGTTTT----ACGTACAT-T-ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATA-C------TAGTATCGAG------GACAA--GTG-------A------ATG-G------------CCCGCC-AAAC-ATTT-ATCCGCGCT---GATC----GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA------AGACTTTACTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
finalCons : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAAT--GT-CATTTGAGAAGTAAGACAAATGC----------TTTTCAACTAAAATAAATGAAC----TNAAAATGAATACACCAATATTG-TTT-GTTAATAACGC--TTAGTGGTTTTACG-----ACAT---ATGCA-CATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCAT-G-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTACATGTA----CAT--TGTT-ATAC--------AGTATCGAG------GACAA--GTGGGAAATGGGC----------------------CCGCC-AAAC-A----ATCCGCGCTTC---------GATACGT-TTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGCC-TGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATAAGCTT---------CTCTTTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCCT---AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATGGTTAAAAAACAAGCCCGCCATTCATTTATCCATGGTTTTCCGAGCTATTGTAG
Alignments
lowQualScore : 1 1 1 33333 1 2222 222222 2222222 666666666666 11 1 222 11 222222222222222 11 111111 5555555555555 222222 1 2222 2222 11 222 11111 1111 222222 111 1 222222222222222222 66666666666666666 6666666666666666666666666666666666666666666666666666666666666666666 222222 222 111 7777777777777777 111 2222 1111 11 11111 111111 11111111 1111 111
lowQualScore : 5 5 5 7 3 0 33333 7 3 1 4444 1 1 555555 1 3333333 1 1 888888888888 1 88 3 444 44 1 999999999999999 3 8 99 0 3 11 0 444444 1 0 111 8888888888888 999999 1 5 0 6 0 77 5555 8 2222 5 11 444 66666 8 1 8 7777 6 111111 8 8 111 6 7 999999999999999999 99 6 33333333333333333 0 1 8888888888888888888888888888888888888888888888888888888888888888888 1 5 1 6 1 999 3 222222 5 77 5 77 33 111 99 111 6 5 3333333333333333 6 1 5 2 111 5 5555 8888 1 11 5 6 1 1 5 44444 444444 66 1 22 8888 2 0 0 88888888 5 5 5 9999 7 5 4 4 4 777 4 4 5 5 5 0000 888 333 5 0 4 66 55 4 4 4 8888 4
lowQualScore : . . . . . . ..... . . . .... . . ...... . ....... . . ............ . .. . ... .. . ............... . . .. . . .. . ...... . . ... ............. ...... . . . . . .. .... . .... . .. ... ..... . . . .... . ...... . . ... . . .................. .. . ................. . . ................................................................... . . . . . ... . ...... . .. . .. .. ... .. ... . . ................ . . . . ... . .... .... . .. . . . . . ..... ...... .. . .. .... . . . ........ . . . .... . . . . . ... . . . . . .... ... ... . . . .. .. . . . .... .
lowQualScore : 5 5 5 3 7 7 33333 3 3 0 0000 0 0 333333 0 0000000 0 0 333333333333 0 33 3 333 00 0 000000000000000 8 0 44 8 2 00 8 000000 4 8 888 4444444444444 444444 0 0 8 0 8 44 4444 0 4444 0 00 222 00000 0 4 0 0000 0 666666 0 0 777 0 3 333333333333333333 22 7 33333333333333333 7 0 7777777777777777777777777777777777777777777777777777777777777777777 0 0 0 4 0 777 0 333333 7 99 7 99 22 222 44 777 7 7 7777777777777777 7 0 7 5 777 6 0000 2222 0 00 0 7 0 7 7 33333 444444 99 1 44 1111 5 1 4 11111111 0 0 0 0000 0 0 4 4 4 888 4 4 0 0 0 6666 888 888 0 8 4 11 55 0 0 0 5555 0
consensus : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAA--TG-TCATTTGAGAAGTAAGACAAA----TA---T--TTTCAACTAAAATAAATGAA-TNAAAATGAATACACCAATATTG-TTTGTTGATAA-C--G-CTTAG-TGGTT--TTACGTACA--T--ATGC-ACATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCA-TG-TGAATAAAGACGCGC---ATGA-TTGGA--------ATGTAC----ATGTACA--TTG-TTATACT-------A-------GTATCGAGGACAAGT--G----GG--AATGGG-----------CCCG-CCAAAC-ATTT-ATCCGCGCTGA---TC------GATACGTTTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA-------AG-CTTTACTCT-TTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
Reference ( family-4239 ) : NNAAAAATGAACAACATCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTNTTCAAAATNAAANAAAAC-A--AACNA--ATTCCANAAAAAATNT------------AAAAAATCANCTTCAATT--GCCTGA-GATTT-GAAAA-CGANCAATTATTATATGAT-----ATG------TGAGGTGAAAAT-AAATAATTATA-TAAGACATTTCCCCCC--TTCACAA--TG-TCATTTGAGAAGTAAGACAAA----TG--CT--TTTCAACTAAAATAAATGAACTNAAAATGAATACACCAATATTG-TTTGTTAATAA-C--G-CTTAG-TGGTT--TTACG-ACA--T--ATGC-ACATCTATCCTTTT-CTAT----TACTTGCTTGTTT----NCA-TG-TGAATAAAGACGCGC---ATGATTTGGA--------ATGTAC----ATGTACA--TTG-TTATAC--------A-------GTATCGAGGACAAGT--G----GGA-AATGGG-----------CCCG-CCAAAC-A----ATCCGCGCT-----TC------GATACGTTTGTATAAAAGCAACGAGGAGTANTTTTTT--TTTGAAA-A----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCGAGGAGC-CTGC-GGATATT---GC-TACACGAAGT-GGAAAAGAATA-------AG-CTT--CTCT-TTAGCCGCCTCACTAACACCGCAAG---TAACGCAGCTAAAA----AAGCT-A--GGTAAACTGTGTTCA--CGAATTGAAACGCTGTCAACGATACAGACCATGTTAGG-ACGGTGGACGAAATCAGGAGGAAATGNACCACATACATG-A-----ATAGCAC------AAAAAAGATT--ACCATGACTTTCGTGACAATCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGACACTTTCGAAAACCA
gi|1 : AAAAATGA-CAAT-TCCTTTGAAATCACCTTTAGTTTAATACATATAGAAATGGGAAACAAATAATTTTGATTTAATTCCGGAAAATAACGAACATTTTAATGATA-CAATTATTT-CAAAATACGAAATATATTTTCAAAATAAAAGAAAACCA--AACCA--A----ACAAACAACCCCCTCCCCCCCAAAAAAAATCAGCTTCCATT--GCCTGA-GATTTTGAAAA-TGATCAATTAGTATATGAT-----ATG------TGAGGTGAAAAT-AAATGATTATT-TTAGAAATTTTCCCCC--TTCACAA--TG-TAAATTGAGAAGTAAGACAAA----TAATAT--TTTCAGCTAAAATAAA--A--TCAAAATGAATATACAAATATTG-TTTG-----------G-TTT-----GTT--TTACGTACATGT--ATGC-ACATCAATTCTTTT-CTAT----TACTTGCTTGTTT----CCA-TG-TGAATAAAGACACGC---ATGA-TTGGA--------ATGTAC----ATGCACATGTTG-TTATACT-------A-------GTATTGAGGACAA-T--A----GGC-ACTGGT-----------TCAA---AAAT-A----ATCC-CGCCAAAGATC------GAAACGTTTGTATAAAAGCAACGAGGAGTATTTTTTT--TTT--AA-C----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAG--CTGC-ACATATT---GC-TACATGAAGT-AGAAAAGAATA-------AGACTTCACTCT-TTAACCGCCTCACTAAC-CCGCAAG---TAACGCAGCTAAAA----AAGCT-A--TGTAAACTGTGTTCA--CGAATTGATACGCTGTCAACGATACAGACCACGTTAGG-ACGGTGGAGGAAATCCGAAGGAAAAGGACTACATACATG-A-----ATAGCAC------ATAAAAGATT--ACCATAACTTTCGTGACAATCTTAAGA-CATCCCTAAACATG-TGCCCCCCCCTTTGCA-C-CTCC-----AGAT--AATCTTATCCTT-AGG-ACGA-ATC---C--AACTT-AGG-A-CTCAATC-GAAAACAT-TCTT----ATGAC---TTAAG--G-CATGT-CTAAG-ACCA--TCCTAA--GACATT-G-TCT----CAG-CCT-AAGATAC-TTCGAAAAC
gi|10 : caaaccaTGCTCA--CGAATTGAAACACTGTCAACGATACAGACCATGTCAGG-GCAGTGGACGAAATCAGAAAGAAATGGACCACATACATACATGTATATAGCAC------AAAAAAGATT--ATCAT---T---------ATCTTAAGACCATCCTAAGACATGTAGT--------TTG-A-C-GTCC-T--AAGATTGAATCag
gi|11 : aaagaaaagaaaaaTTAT-CTTTAGG-ACAA-ATC---CT-AGCTT-AGGGA-CTCAATC-GAAA-CATGTCTTTTTCATGAC---TTTA---GACATGTCCGAAG-ACCA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACTTTCGAAAAC
gi|12 : ct-AGG-ATGA-ATCTCCCT-AATTTTAGA-AATTCAATCCGAAAACATGTCTT----ATGGCCCTTTAAAGAG-CATGGCCAAAATACCAGATCCTAAAAGACA-T-GGCCT----CAGTCTT-AAGACATTTTCGAAagg
gi|13 : taTTTTT--ATTGAAACA----TCATTGCCACG--AAATATCAAAACAACG--TGTCTGAGGAGC-CTGCCGGATATTATCGCATACATGAAGT-AGAA--GAAT------------------CT-TTAGCCGCCTCACTAATACTACAAC---TAACGC
gi|14 : CTTAA-CTT-AGGCATGATCTC---CTCAACTT-AGA-A-TTCAATC-AAAAA---------------AC----TAA---A-CATGCCCAAAG-ACCA--TTCT-A--GACA-CGG-TCT----CAGTCTTGAAGACA
gi|15 : g------AAAATAGATT--ATCAAAACTT------CAA-------ACCATCCCAAGA-ATGTTGC--------TTG-G-C-GTCT-T--AAGATGGAATCTTAT-CTT-AGG-ATGA-GTC---CT-AACTT-Agt
gi|16 : AGT-GGAAAAGAATACTAGTAAGG-CTTTACTCT-TTAGCCGTCTCACTAACATCGCAAG---TAACGCAGCTAAAA----TAGCT-A--GGT
gi|17 : TTTTT--ATTGAAA-AA---TCAT-GCCATA--AAAT-CCAAACTTACG--TGTCCGAGGGG--CTGC-GGTTATT---GT-TGCACGAAGT-GGAAAA
gi|18 : gTT--AC-ATG--TTT--TAACAGT--TAAGACCATCCTAAGACATGT--C--------TTG-AGCAATCC-T--AAG
gi|18 : caacTAAG-ACCA--TCCTAA--GACA-T-G-TCTTGAGCAATCCT-AAGGCACTTTCGAAAACCAgcactttcgaaaaccagga
gi|19 : caacttacatgttttaacagtCATGTCTT----ATGAC---TAAA---G-AATGTCATTTG-ACCA--TCCTAA--GACA-T-G-TTT----CAGTTCT-AAGACACTTTCGAAAACCAgga
gi|2 : AAAAATGAACAACATCTTTTGAAATCACCTTTAGTTTAATACATA-AGAA-TGAGAAACAAACAATTTTGATTTAATTTAGGAAAATAATGAACATTT-----ATATCAATTATTT-CAAACTACGAAATACGTAT----AATCAAACAAA-C-A--AACAA--ATTTTAAAAAAAATTT------------AAAAAATCACCTTCAATT--GTATGA-TATTT-AAAAAACGACCAATTATTATATGAT-----ATG------TGAGGTGAATAT-AAATAATTATT-TAAGACATCCCCCCCCCCTTCACAA--TG-TCAATTGAGAAGTAAGACAAA----TG---T--TTTCAACGAAAATAAA---A-TCAAAATGAATACACCAATATTG-CTTGTTG-TAA-G--G-TTT---TG-TT--TTACGTACA--TTTATGC-ACATCAATTCTTTT-CTAT----TACTTGCTTGTTT----ACA-TG-TGAATAAAGACACGC---ATGAAT-GGA--------ATGCAC----ATGTATA--TTG-TTATACT-------A-------GTATTGAGGACAAGT-----------AATGG------------TCCG-CCAAACGA----ATCCGTGCTGA---TC------GATACGTTTGTATAAAAGCAACGAAGAGTATTTTTTT--TTTGAAA-G----TCAT-GCCACG--AAAT-CCAATCTTGCG--TGTCCAAGGAGC--TGC-AGATAAT---GC-TACATGAAGT-GGAAAAGAATA-------AGACTTTACTCT-TTAGCCGCCT----AACGTCGCAGG---TAACGCAGCTAAAA----ACGCT-T--GGTAAACTGTGTTCA--CGAATGGAAACGCTGTCAACGATACAGACCATGTTAAG-ACGGTGGAGGAAATCAGAAGAAAAAGTACCACATACATG-A-----ATAGCAC------AAAAAAGAGT--AAAATGACTTTTGTGACGTTCTTAAGACCATCCTAAGACATGTTGC--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-AGG-ACGA-ATC---CT-AACTT-AGG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAG---G-CATGTCCTAAG-ACCA--TCCTAA--GACA-T-G-CCT----CAGTCCT-AAGATACTTTCGAAAACCAggg
gi|20 : ccAATGGGAAACAAATAATTTTGATTCAATTCTGGAAAATAATAGAAAAAT-----AAATCAATTATTTACAAACTAt
gi|22 : AAAGCAACGAGGAGCAGTGT---------AAT-G----TCAT-GCCACC--AAAT-CCAATTTTGCG--TGT
gi|23 : --GACA-T-G-TTT----CAGTCCT-AGGACACTTCCGAAAACCA
gi|3 : TATGA------ATG------TGGGGTGAAA-T-AGATAATTATAATAAGACATTTCCT-----TTCACAA--AA-TCATTTGAAAAATT---CAA----------T--TTTAAACTAAAGTAA-TGAACTGGAAAC-AATACACTAATACTGATTTGTTGATAA-CTCG-CTTAG-GGTTT--TTA---ACA--T--ATGA-TTATCTATCCTTCTACTGTGTAATAATTGCTTGTT------CA-AGACAAATAAAAGCGCGT---ATGGATTGGG--------ATGCAC----TAGTGCA--TT--TTATA-------------------ATCAAGGTCAAGTGAG----GGC-GATGGG------------CTG-AAAAAT-A----AGCCGCACG-----T------------GTTT-TATAA---TTCCGA-----AATTATCTCGTGTGAAA-A----ACAT--TTATGAAAAAT-C--ATCCTATGAAAGTC--GGGAGCTTTGC-CGATATT---GC-TACAC-AAGTGGGAGAAAGATA-------AC-ATT--GTCTGTTTTCCGCTTCACT--------------TAACAC-GCTAAAAC---AAACT-ATGGAAAAACTATGTACAATCGAATT-AAACCATGTAAA-------------GTTAGACATGG-GAACTAAATCAGGAAGAAATAT-TCACGTGCATA-A-----GTAG---------AAAAAAggc
gi|4 : AAAAAAAAT-ATTAATTATAATTCCGGGAAAAATAT------------AAATCATGAACTTCACTTTGGCCAAAAGATT---AAAA-TAAGCAATTATTATATGATTTAACATGCATTGTTAAAGTGAAAAGGAAATGATTATA-TAAGACATTTTCCCCC--T--GCAATTTGTTCATTTGAG-AGTAAGACAAAACATTA--TT--TTTTAACTAAAATAAATAAATTTAAAATGA--ACTTCATTACTGTTTTGTTAATAA-T--GCCTTAATTGGTTTCTTAAT-GTA--C--ATGCAACATTTCTCCCTTT-CTAT----TAC-TGCTTGTTT----TCATTG-TGAATAAAGACGCACTTTAGAATTTGGATTAGAATCGTATACATGTATGTACA--TTGTTTATATCAAGGATGA-------GTAATG-GGACAAAT--GGTTCGAA-AATAAG-----------CCCGCCCAAAC-ATTTTATCCGTGCT-----TTTCCGGGGATA---TTGTATAAA
gi|5 : aaT---GC-TACACGGGGT-GGAAAAGAACA------------------C-TTAACCGCCTTACTAACACCA-AAGCTTTAACGTCGCAAAAATAAAAAGCTTG--GGGAAACTGTACTCA--CGAATTCAA-TGATGCCAACGATACAGACCATGTTAGG-GCGGTGGACGCATGCAGGAGGGAATGAACCAC--ACACG-A-----ATAGCAC------AAAAAAGATTTCACCATGAC-TCCATGGCAATCTTTCAACAAGCCTAAGACATGTTGC--------TTG-A-C-GTCCTT--AAG-----------------AAG-ATGA-ATC---CT-AAGTT-AGG-A-CTCAGTC-GAAAACAt
gi|6 : AACGCTGTAAACGATACAGACCATGTTAAG-ATGGTAGACGAAATCAGGAAGAAATAAACCACATGCATG-A-----ATAGCGCTAGCATGAGAAATATG--ATCATGACTTTCGAGACAATCT-AAGACCATCATGAGACATGTTGC--------TTG-A-C-GTCC-TTTAAGACCGAATCTTAT-CTT-AAG-ACGA-ATC---TT-AACTT-AGA-A-CTCAATA-GAAAACATGCTTT----ATGAC---TTAA---G-CATGCCCTAAG-ACCA--TACTAA--GATA-T-G-CCT----CAGTTCA-AAGACACTTTTGAAAACCA
gi|7 : GTGAAAGT-AAATAATTATA-TAAGAC--CCCCCTCC--TTCATA----G-TCATTTGAGAAGTGATTCAAACAT-TA--CTATTTTCAACTAAAATAAATGAA-TGAAAATTAATATATCAATATCG-TTTGTTAATAATT--G-CTTAG-TGGTT--TTTCA-ACA--T--ATGC-ACATCTATCCCTTT-CTAT----TACATGCTTGTTTATAAATA-TG-TGAATAAAGAAGTGT---ATGG-TTGGA------------------ATGTACA--TTG-TTA--------------------TATCAAGGACAAGT-----------AATGGG-----------Cg
gi|8 : ACATG-A-----ATAGCAC------ATAAAAGATT--ATCGTAACTTTCGTGACAATGTTAAGACCATCCTTAGACATGTTGT--------TTG-A-C-GTCC-T--AAGATTGAATCTTAT-CTT-CAG-ACGA-ATC---CT-AACAT-ATG-A-CTCAATC-GAAAACATGTCTT----ATGAC---TTAA---G-CATGGCTTAAG-ACTA--TCCTAA--GACA-T-G-TCT----CAGTCCT-AAGATACCTTCGAAAACCAaatggttaaaaaataagcccgc
gi|9 : AATAAAGACACGC---ATGATT-GGA--------ATGTA------TGTACA--TTG-TTATAC--------ATGTACTAGTATTGAGGACAAGT--AAT--GGACAATGGTTAAAAAATAATCCCG-CCAAAC-ATTT-GTCCGTGCTGA---TC------GATACTTTTGTATAAAAGCCACGAAGAGTAGTTTTTT--TTTAAAA-AAAAGTCAT-GCCATG--AAAT-CTAATCTTGTG--TGTCCAAGGAGggg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATGGTTAAAAAACAAGCCCGCCATTCATTTATCCATGGTTTTCCGAGCTATTGTAG