lowQualScore : 11111111111111111111
lowQualScore : 1 22222 1111 888888888 22 2222 1 66666666666666666666 111 2222 111 22222 1 55555555555555 11 111 1 1 3333333 1111111 1 11 1
lowQualScore : 9 88 1 5 5 7 77 33333 1111 333333333 55 5 5 8888 0 0 66666666666666666666 5 7 6 0 2 111 3333 6 99999 2 5 66 888 5 5 444 1 5 88888 77 22 5 11111111111111 11 5 5 3 1 444 5 9999 5 5 0 5 2 88 5 3 5 2 7777777 1111111 0 5 77 3 88 8 5 8 6 6 3 6
lowQualScore : . .. . . . . .. ..... .... ......... .. . . .... . . .................... . . . . . ... .... . ..... . . .. ... . . ... . . ..... .. .. . .............. .. . . . . ... . .... . . . . . .. . . . . ....... ....... . . .. . .. . . . . . . .
lowQualScore : 2 33 0 7 7 3 99 44444 3333 555555555 00 7 7 7777 1 3 33333333333333333333 0 5 7 7 5 777 8888 7 55555 5 7 11 888 0 0 444 3 7 66666 99 77 0 77777777777777 88 0 0 4 4 000 0 0000 0 0 0 0 0 22 0 3 7 3 1111111 8888888 0 0 22 2 77 0 8 0 0 0 0 7
consensus : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGGCNN-AAAT---GATGTTTTATCAAGACTAAT----AATTGCCATAATTTCAAAG-TTAA-AGTGGTTATT-TATATGCACGATAACATTTA------------TTAGGACACGTGAGTTTACATACA-ATACTCACATGGTTCTG---TA--N-ATATGA-TA-ACA-GTGGTGG-TACG--ATTT---A-GGC-TAGCCAA-TTTA-C-----AATTT--TTACTGATT-TGAC-TT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTGGG---ATA-AA-GATT-GA-ACGTT-TGTTG-ATATGAAGAANCCTGT-CATAATTAAGATGCCCCCAAAA---A---TT-ACT-CGGC-GGTCCTCTTTCGTA-GATCGCTGGATGCCT-CAAAGCA-GCGAGAGGTCAACCTTNTCTTGAGTTCG-AGCCCTTTTCATG
Reference ( gi|1 ) : CTTCACGTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATGAA--ATGGCAA-AAAT---GATGTTTTATCAAGACTAATTCTAAATTGCCATAATGTCAAAG-TTAA-AGTGGTTATTATATATGCATGATAACATTTAGTACACATACATTTAGTACACATGGGTTTACATATA-ATGCTCACATGGTTCTG---TA--A-ATATGA-TA-ATA-GTGGTGG-TACG--ATTT---A-GGC-TAGTCGA-TTTA-C-----AATTT--TTACTTATT-TGAC-T------GCATCTTTG-TGT-ATTCTCATCAATATATTTTCAC-ATTGGG---ATA-AA-GATT-GA-AAGTT-TGTTG-ATATGAAGAATCCTGT-CATAATTAAGATACCCCCAAAA---A---TT-ACT-CAGC-AGTCCTCTTTCGTT-GATCGCTGGATGCCT-CAAATCA-GCGAGAGATCAATCTTTTCTTGAGTTTG-AGCCCTTTTCATG
gi|5 : CTTCACTT--GAGAAAGTGCAT-AAATTTTTGTACATCTGGATAAATTATG-CGATAAAT---GATGTTTTATCAAGACTAAT-----GTTGCCATAA---CAAA--TTGT-AGTGGTTAT--TATATGCATGATTACATTTAGTACA---GCGTTGAG-----------TTACATATATATGCTAACATGTTTCTG---TA--T-ATATGA-TA-GCA-GTGGTGGTTACG--ATTT---A-AGC-TAGTCAATTTTA-C-----AATTT--TTACTGATT-TGA-------------CTTTG-TGTGATTC
gi|9 : CTCCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATTTGGATAAA--ATGG----AAGTTAGGATGTTTTATCAAAACT-------AATTGCCATAATTTCAAAG-TTAA-AGTGATTAC--CATATGCACAATAACAT--------------TTTGG-ACATATGAGTTTACATACA-GTACTCACATGGTACTG---TA--T-ATATGA-TA-ACA-GTGGTGG-TACG--A
gi|4 : TTCATTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGGCAT-AACT---GATGTTTTATCA----TAGCT---AATTGCAATAATTTCGAAG-TTAA-AGTAGTTAT--TATATGCAAAATAACA--TA-------------TAGGACACGTGAGTTTACATACA-ATACTCACATGGTTCTA---TA--C-ATATGA-TA-ATA-GTGGTGG-TACG--ATTT---A-GGCTTAGTAG-----C-C-----AAT-------CTGATTGTGACTT------GCATCTTTGCTGT-ATCCTCATC------------C-ATTGGG---ATAGAA-GATT-GACACGTCGTGTTG-ATAT
gi|3 : TTCACTTATGAGAAAGTATGT-AAATTTT-GTACAACTGGATAAA--ATGGACA-TAAG---GATGTTT-AT-AAGACTAATT-------GCCATAAC-TCAAAGGTTAACAGTGGTT-TTATATGCACA-GATAACAT---------------TTCGGACACGTGAGTTTAC-TATA-ATGCTCA-ATGGTTCTG---TA--ATATATGAATACATGTATGGTGG-TACG--ATTT---ATGGA-TAGTC-A-TTTAAC-----AGTTTAGTTACTGATT----C-T---------TCTA-G-TGT-ATTATCATCAATAT-TGTTAAC-ATTGGGTGGATA-AAAGGTT--A-ACGTT--GTTGGATATGAAGAATCCCGT-C-T-ATTAAG-TG--CCTAACT---A---TT-A-T-CAG--AGTCGTCTTTC
gi|2 : TCACTTA-GAGAACGTG-GTGAAATTGT--TACATCTTCA--AA--ATG-CTC-AAAT---GTAGTTTTATCAAAGCTAATG-------GCCATAAT-TCAAAG-TTGA-AATGGTTATTATAT--GCACAATGACATTTA--------------AG-ACACGTGAGTTTTCATATA-ATACTTACATGGTTCTG---AA--T-ATATGA-TA-AC------------------TT---A-GGC-TAGCCAG-TTTA-C-----AATTT--TT-----TT-T----T-------CATCTTTG-TGT-ATG--------------TTCAC-ATTGGG---ATA-AA-GATT-GA-AAGTT-TGTTG-ATATGAAGAATACTGT-CATAATTAAGATGCCCT--AAA---A---TT-ACT-CAGC-AGTCCTCTTTCGTA-GATCGCTGGATGCAT-CAAAGCA-GCGAGGAGTCAACATTGTCTTCAGTTTGAAACCCTTTT
gi|12 : cCAC-TG-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGGCAT-AAAG---GATGTTTTATCAAGACT-------AATTGCCATAATTTCAAAG-TTAA-CGTGGTTAT--TATATGCACGATAACATTTAGTATACGTt
gi|16 : GT-AAATTTT-GTACAACTGGATAAA--ATGGCAT-AAAG---GATGTTTTATgag
gi|13 : AAG-GTAA-AGTGGTT--TCTATAGGCACAATAACATT---------------TAGGACACGTGAATTTACATACA-ATACTCTAATGGTTTTGCGTTATTA-ACACAA-TA-ACA-GT-GTGG-TACAGTATTTGCAA-GGC-
gi|6 : GTAG-TAAG--ATTT---A-GGC-TAGTCAA-TTTA-C-----AATTT--TTACTGATT-TGAC-TTT----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTGGG---ATA-AA-GATT-GA-ACGTT-TGTTG-ATATGAAAAATCCTGT-CATAATTAAGATA-CCCTAAAA---A---TT-ACT-CAGC-AGTCCTCTTTCGTA-GATCGCTGGATGCAT-CAAAGCA-GCGAGAGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTcgta
gi|8 : CG--GTTT---A-GGC-TAGCCAA-TGTA-CGATTAAATTT--TGACTGATA-TGAC-TTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTGGA---ACA-GA-GATTCGA-ACATT-TGTTG-CTATGAGAAAGCCTGT-CATAATCAAAA-----CCAAAG---AGTATTGACT-TGGT-GGTCCTA--------GATCGGTGGATGCCT-CAAAACA-GCGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATGac
gi|7 : G--GTTT---A-GGC-TAGCCAA-TGTA-CGATTAAATTT--TGACTGATA-TGAC-TTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTGGA---ACA-GA-GATTCGA-ACATT-TGTTG-CTATGAAGAAGCCTGTCCATAATCAAAA-----CCAAAGAGTA---TTGACT-TGGT-GGTCCTA--------GATCGGTGGATGCCT-CAAAACAGGCGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATG
gi|14 : TG-TGT-ATTCTCATCAATATATCTTCAC-ATTGGG---ATA-AA-TATT-GA-ACGTG-TGTTG-ATATGAAGAA
gi|10 : TATGTTCACCATTGG----ATA-AA-GATT-GA-ACGTT--GTTG-ATATGAAAGAACCTGT-CATAAT-AAGATGCCCT--AAA---A---TT-ACTGCATCCAGTGCTCTTTCGTTAGAT-GCTGGATGCCTTCAAAGCA-GCGA-AGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTTTATgactg
gi|15 : GT-CATAATTAAGATGCCAT-AAAA---T---TT-ACT-CAGC-AGTCCTCTTTCGT
gi|17 : A---A---TT-ACT-CATT-GGTCCTCTTTCGTA-GATCGCTGGATGTCag
gi|18 : GGTCAGCCTTTTCTTGAGTTTG-AGCCCTTTTCATGa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AAGTGGTTTCTATAGGGCACAATAAACATTTAAGGACTGAATTTACATACAATACTCTAAATGGTTTTTGCGTTATTAAACACATAACATGTGGTGTACAGTATTTGCAAGGCCGTAACCAACCGATGTGCACCCACATTTT
Alignments
lowQualScore : 1111 22222222222 11111 666666666666666666 222222 111 11 111 1111 22222 333333 1111111 111
lowQualScore : 55 5 5 66 9999 1111 55555555555 0 3 4 55555 4 4 4 000000000000000000 4 4 5 5 2 5 333333 5 777 333 0 4 00 444 4 4444 4 3 55555 66 0 555 000000 0 6 4 4 0 1 4 777 4 4 8 4 4 4 1 5 0 9999999 555 8 9999 6 11 1 5 5 6 1 1 5
lowQualScore : .. . . .. .... .... ........... . . . ..... . . . .................. . . . . . . ...... . ... ... . . .. ... . .... . . ..... .. . ... ...... . . . . . . . ... . . . . . . . . . ....... ... . .... . .. . . . . . . .
lowQualScore : 99 0 0 99 9999 9999 99999999999 1 6 4 99999 4 4 4 666666666666666666 4 4 0 0 5 0 111111 0 999 888 1 4 00 000 0 0000 4 1 00000 99 1 666 111111 1 2 4 4 1 8 4 888 4 4 9 4 4 4 0 0 9 8888888 666 9 4444 2 66 1 0 7 7 0 4 7
consensus : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA------------T-AGGACA-CGT-GAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCC-TCAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
Reference ( family-422 ) : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CNNAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA------------TTAGGACA-CGT-GAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCC-TCAAAGCAG-CGAGAGGTCAACCTTNTCTTGAGTTCG-AGCCCTTTTCATG
gi|1 : CTTCACGTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATGAA--ATGG-CAAAAAT---GATGTTTTATCAAGACTAA-TTCTAAATTGCCATAATGTCAAAGTTAA-AGTGGTTATTATATATG-CAT-GATAA-CATTTAGTACACATACATTTAGTACA-CAT-GGGTTTACATATA-ATGCTC-ACATGG-TTCTG------T-A--AATATGATAATA---GTGGTGG-TACG--ATTT---A-GGC----TAGTCGA-TTTAC-----AATTT--TTACTTATT-TGACT------GCATCTTTG-TGT-ATTCTCATCAATATATTTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATCCTGTC-ATAATTAAGATACCCCCAAAAA---TT-ACT----CAGCAGTCCTCTTTCGT-TGATCGCTGGATGCC-TCAAATCAG-CGAGAGATCAATCTTTTCTTGAGTTTG-AGCCCTTTTCATG
gi|10 : TATGTTCACCATTG---G-AT-A-AAGATT-GA-ACGTT--GTT-GATATGAAAGAACCTGTC-ATAAT-AAGATGCCCT--AAAA---TT-ACTGCATC--CAGTGCTCTTTCGTTAGAT-GCTGGATGCCTTCAAAGCAG-CGA-AGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTTTAT
gi|11 : A-AGTGGTT-TC-TATAGGGCAC-AATAAACATTTA--------------AGGAC----T-GAATTTACATACA-ATACTCTAAATGGTTTTTGCGTTATT-A--AACAC-ATAACAT--GTGGT-G-TACAGTATTTGCAA-GGCCG--TAACCAA-
gi|12 : CACT-G-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAG---GATGTTTTATCAAGAC----T----AATTGCCATAATTTCAAAGTTAA-CGTGGTTA-T-TATATG-CAC-GATAA-CAT---------------TTAGTATA-CGT-GAGccgatgtgcacccacatttt
gi|13 : AAGGTAA-AGTGGTT-TC-TATAGG-CAC-AATAA-CATTTA---------------GGACA-CGT-GAATTTACATACA-ATACTC-TAATGG-TTTTGCGT---T-ATTAACACAATAACA---GT-GTGG-TACAGTATTTGCAA-GGC----
gi|14 : TG-TGT-ATTCTCATCAATATATCTTCAC-ATTG---GGAT-A-AATATT-GA-ACGTG-TGTT-GATATGAAGAAGACTGcgta
gi|15 : GTC-ATAATTAAGATGCCAT-AAAAT---TT-ACT----CAGCAGTCCTCTTTCGT-AG
gi|16 : GT-AAATTTT-GTACAACTGGATAAA--ATGG-CATAAAG---GATGTTTTAT
gi|17 : AA---TT-ACT----CATTGGTCCTCTTTCGT-AGATCGCTGGATGTC-
gi|18 : GGTCAGCCTTTTCTTGAGTTTG-AGCCCTTTTCATGa
gi|2 : TCACTTA-GAGAACGTG-GTGAAATTGT--TACATCTT--CAAA--ATG--CTCAAAT---GTAGTTTTATCAAAGCTAA-T----G---GCCATAATT-CAAAGTTGA-AATGGTTATT--ATATG-CAC-AATGA-CATTTA---------------AGACA-CGT-GAGTTTTCATATA-ATACTT-ACATGG-TTCTG------A-A--TATATGATAAC--------------------TT---A-GGC----TAGCCAG-TTTAC-----AATTT--TT-----------TTT-----TCATCTTTG-TGT-AT--------------GTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATACTGTC-ATAATTAAGATGCCCT--AAAA---TT-ACT----CAGCAGTCCTCTTTCGT-AGATCGCTGGATGCA-TCAAAGCAG-CGAGGAGTCAACATTGTCTTCAGTTTGAAACCCTTTTt
gi|3 : cTTCACTTATGAGAAAGTATGT-AAATTTT-GTACAACTGGATAAA--ATGGACATAAG----GATG-TTTAT-AAGAC----T----AATTGCCATAACTCAAAGGTTAACAGTGGT--TT-TATATG-CACAGATAA-CAT---------------TTCGGACA-CGT-GAGTTTAC-TATA-ATGCTC-A-ATGG-TTCTG------TAA--TATATGAATACATGTATGGTGG-TACG--ATTT---ATGGA----TAGTCAT-TTAAC-----AGTTTAGTTACTGATT----CTT-----CTA-----G-TGT-ATTATCATCAATAT-TGTTAAC-ATTGGGTGGATAA-AAGGTT--A-ACG-T-TGTTGGATATGAAGAATCCCGTC--T-ATTAAG-TG--CCTAACTA---TT-A-T----CAG-AGTCGTCTTTCt
gi|4 : TTCATTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAACT---GATGTTTTATCA----TAGCT----AATTGCAATAATTTCGAAGTTAA-AGTAGTTATT--ATATG-CAA-AATAA-CAT--A------------T-AGGACA-CGT-GAGTTTACATACA-ATACTC-ACATGG-TTCTA------T-A--CATATGATAATA---GTGGTGG-TACG--ATTT---A-GGCTTAGTAGCCAA-T-------------------CTGATTGTGACTT-----GCATCTTTGCTGT-ATCCTCATC------------C-ATTG---GGAT-AGAAGATT-GACACGTCGTGTT-GATAT
gi|5 : CTTCACTT--GAGAAAGTGCAT-AAATTTTTGTACATCTGGATAAATTATGC-GATAAAT---GATGTTTTATCAAGACTAA-T----G-TTGCCATAA---CAAA-TTGT-AGTGGTTATT--ATATG-CAT-GATTA-CATTTA---------------GTACAGCGTTGAGTT-ACATATATATGCTA-ACATGT-TTCTG------T-A--TATATGATAGCA---GTGGTGGTTACG--ATTT---A-AGC----TAGTCAATTTTAC-----AATTT--TTACTGATT-TGA------------CTTTG-TGTGATTC
gi|6 : GTAG-TAAG--ATTT---A-GGC----TAGTCAA-TTTAC-----AATTT--TTACTGATT-TGACTTT----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAAAATCCTGTC-ATAATTAAGATA-CCCTAAAAA---TT-ACT----CAGCAGTCCTCTTTCGT-AGATCGCTGGATGCA-TCAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTTG-AGCCCTTT
gi|7 : G--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAAGAAGCCTGTCCATAATCAAAA-----CCAAAGAGTATTGACT----TGGTGGTCCT--------AGATCGGTGGATGCC-TCAAAACAGGCGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATGac
gi|8 : CG--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAGAAAGCCTGTC-ATAATCAAAA-----CCAAAGAGTATTGACT----TGGTGGTCCT--------AGATCGGTGGATGCC-TCAAAACAG-CGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATG
gi|9 : CTCCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATTTGGATAAA--ATGG----AAGTTAGGATGTTTTATCAAAAC----T----AATTGCCATAATTTCAAAGTTAA-AGTGATTA-C-CATATG-CAC-AATAA-CATTT-------------T--GGACA-TAT-GAGTTTACATACA-GTACTC-ACATGG-TACTG------T-A--TATATGATAACA---GTGGTGG-TACG--A
Alignments
lowQualScore : 1111 22222222222 11111 55555555555555555 222222 111 11 111 1111 22222 333333 1111111 111
lowQualScore : 55 5 5 66 5 1111 55555555555 0 3 4 55555 4 4 4 00000000000000000 4 4 5 5 2 5 333333 5 777 333 0 4 00 444 4 4444 4 3 55555 66 0 555 000000 0 6 4 4 0 1 4 777 4 4 8 4 4 4 1 5 0 9999999 555 8 9999 6 11 1 5 6 6 1 1 5
lowQualScore : .. . . .. . .... ........... . . . ..... . . . ................. . . . . . . ...... . ... ... . . .. ... . .... . . ..... .. . ... ...... . . . . . . . ... . . . . . . . . . ....... ... . .... . .. . . . . . . .
lowQualScore : 99 0 0 99 0 9999 99999999999 1 6 4 99999 4 4 4 77777777777777777 4 4 0 0 5 0 111111 0 999 888 1 4 00 000 0 0000 4 1 00000 99 1 666 111111 1 2 4 4 1 8 4 888 4 4 9 4 4 4 0 0 9 8888888 666 9 4444 2 66 1 0 7 7 3 4 7
consensus : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCCT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
Reference ( family-422 ) : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCCT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
gi|1 : CTTCACGTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATGAA--ATGG-CAAAAAT---GATGTTTTATCAAGACTAA-TTCTAAATTGCCATAATGTCAAAGTTAA-AGTGGTTATTATATATG-CAT-GATAA-CATTTAGTACACATACATTTAGTACA-CA-TGGGTTTACATATA-ATGCTC-ACATGG-TTCTG------T-A--AATATGATAATA---GTGGTGG-TACG--ATTT---A-GGC----TAGTCGA-TTTAC-----AATTT--TTACTTATT-TGACT------GCATCTTTG-TGT-ATTCTCATCAATATATTTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATCCTGTC-ATAATTAAGATACCCCCAAAAA---TT-ACT----CAGCAGTCCTCTTTCGT-TGATCGCTGGATGCCT-CAAATCAG-CGAGAGATCAATCTTTTCTTGAGTTTG-AGCCCTTTTCATG
gi|10 : TATGTTCACCATTG---G-AT-A-AAGATT-GA-ACGTT--GTT-GATATGAAAGAACCTGTC-ATAAT-AAGATGCCCT--AAAA---TT-ACTGCATC--CAGTGCTCTTTCGTTAGAT-GCTGGATGCCTTCAAAGCAG-CGA-AGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTTTAT
gi|11 : A-AGTGGTT-TC-TATAGGGCAC-AATAAACATTTA--------------AGGAC-----TGAATTTACATACA-ATACTCTAAATGGTTTTTGCGTTATT-A--AACAC-ATAACAT--GTGGT-G-TACAGTATTTGCAA-GGCCG--TAACCAA-
gi|12 : CACT-G-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAG---GATGTTTTATCAAGAC----T----AATTGCCATAATTTCAAAGTTAA-CGTGGTTA-T-TATATG-CAC-GATAA-CATT---------------TAGTATA-CG-TGAGccgatgtgcacccacatttt
gi|13 : AAGGTAA-AGTGGTT-TC-TATAGG-CAC-AATAA-CATTTA---------------GGACA-CG-TGAATTTACATACA-ATACTC-TAATGG-TTTTGCGT---T-ATTAACACAATAACA---GT-GTGG-TACAGTATTTGCAA-GGC----
gi|14 : TG-TGT-ATTCTCATCAATATATCTTCAC-ATTG---GGAT-A-AATATT-GA-ACGTG-TGTT-GATATGAAGAAGACTGcgta
gi|15 : GTC-ATAATTAAGATGCCAT-AAAAT---TT-ACT----CAGCAGTCCTCTTTCGT-AG
gi|16 : GT-AAATTTT-GTACAACTGGATAAA--ATGG-CATAAAG---GATGTTTTAT
gi|17 : AA---TT-ACT----CATTGGTCCTCTTTCGT-AGATCGCTGGATGTC
gi|18 : GGTCAGCCTTTTCTTGAGTTTG-AGCCCTTTTCATGa
gi|2 : TCACTTA-GAGAACGTG-GTGAAATTGT--TACATCTT--CAAA--ATG--CTCAAAT---GTAGTTTTATCAAAGCTAA-T----G---GCCATAATT-CAAAGTTGA-AATGGTTATT--ATATG-CAC-AATGA-CATTTA---------------AGACA-CG-TGAGTTTTCATATA-ATACTT-ACATGG-TTCTG------A-A--TATATGATAAC--------------------TT---A-GGC----TAGCCAG-TTTAC-----AATTT--TT-----------TTT-----TCATCTTTG-TGT-AT--------------GTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATACTGTC-ATAATTAAGATGCCCT--AAAA---TT-ACT----CAGCAGTCCTCTTTCGT-AGATCGCTGGATGCAT-CAAAGCAG-CGAGGAGTCAACATTGTCTTCAGTTTGAAACCCTTTTt
gi|3 : cTTCACTTATGAGAAAGTATGT-AAATTTT-GTACAACTGGATAAA--ATGGACATAAG----GATG-TTTAT-AAGAC----T----AATTGCCATAACTCAAAGGTTAACAGTGGT--TT-TATATG-CACAGATAA-CATT---------------TCGGACA-CG-TGAGTTTAC-TATA-ATGCTC-A-ATGG-TTCTG------TAA--TATATGAATACATGTATGGTGG-TACG--ATTT---ATGGA----TAGTCAT-TTAAC-----AGTTTAGTTACTGATT----CTT-----CTA-----G-TGT-ATTATCATCAATAT-TGTTAAC-ATTGGGTGGATAA-AAGGTT--A-ACG-T-TGTTGGATATGAAGAATCCCGTC--T-ATTAAG-TG--CCTAACTA---TT-A-T----CAG-AGTCGTCTTTCt
gi|4 : TTCATTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAACT---GATGTTTTATCA----TAGCT----AATTGCAATAATTTCGAAGTTAA-AGTAGTTATT--ATATG-CAA-AATAA-CAT--A-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTA------T-A--CATATGATAATA---GTGGTGG-TACG--ATTT---A-GGCTTAGTAGCCAA-T-------------------CTGATTGTGACTT-----GCATCTTTGCTGT-ATCCTCATC------------C-ATTG---GGAT-AGAAGATT-GACACGTCGTGTT-GATAT
gi|5 : CTTCACTT--GAGAAAGTGCAT-AAATTTTTGTACATCTGGATAAATTATGC-GATAAAT---GATGTTTTATCAAGACTAA-T-----GTTGCCATAA---CAAA-TTGT-AGTGGTTA-T-TATATG-CAT-GATTA-CATT---------------TAGTACAGCGTTGAG-TTACATATATATGCTA-ACATGT-TTCTG------T-A--TATATGATAGCA---GTGGTGGTTACG--ATTT---A-AGC----TAGTCAATTTTAC-----AATTT--TTACTGATT-TGA------------CTTTG-TGTGATTC
gi|6 : GTAG-TAAG--ATTT---A-GGC----TAGTCAA-TTTAC-----AATTT--TTACTGATT-TGACTTT----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAAAATCCTGTC-ATAATTAAGATA-CCCTAAAAA---TT-ACT----CAGCAGTCCTCTTTCGT-AGATCGCTGGATGCAT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTTG-AGCCCTTT
gi|7 : G--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAAGAAGCCTGTCCATAATCAAAA-----CCAAAGAGTATTGACT----TGGTGGTCCT--------AGATCGGTGGATGCCT-CAAAACAGGCGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATGac
gi|8 : CG--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAGAAAGCCTGTC-ATAATCAAAA-----CCAAAGAGTATTGACT----TGGTGGTCCT--------AGATCGGTGGATGCCT-CAAAACAG-CGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATG
gi|9 : CTCCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATTTGGATAAA--ATGG----AAGTTAGGATGTTTTATCAAAAC----T----AATTGCCATAATTTCAAAGTTAA-AGTGATTA-C-CATATG-CAC-AATAA-CATTT--------------T-GGACA-TA-TGAGTTTACATACA-GTACTC-ACATGG-TACTG------T-A--TATATGATAACA---GTGGTGG-TACG--A
Alignments
lowQualScore : 1111 22222222222 11111 55555555555555555 222222 111 11 111 1111 22222 333333 1111111 111
lowQualScore : 55 5 5 66 5 1111 55555555555 0 3 4 55555 4 4 4 00000000000000000 4 4 5 5 2 5 333333 5 777 333 0 4 00 444 4 4444 4 3 55555 66 0 555 000000 0 6 4 4 0 1 4 777 4 4 8 4 4 4 1 5 0 9999999 555 8 9999 6 11 1 5 6 6 1 1 5
lowQualScore : .. . . .. . .... ........... . . . ..... . . . ................. . . . . . . ...... . ... ... . . .. ... . .... . . ..... .. . ... ...... . . . . . . . ... . . . . . . . . . ....... ... . .... . .. . . . . . . .
lowQualScore : 99 0 0 99 0 9999 99999999999 1 6 4 99999 4 4 4 77777777777777777 4 4 0 0 5 0 111111 0 999 888 1 4 00 000 0 0000 4 1 00000 99 1 666 111111 1 2 4 4 1 8 4 888 4 4 9 4 4 4 0 0 9 8888888 666 9 4444 2 66 1 0 7 7 3 4 7
consensus : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCCT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
Reference ( family-422 ) : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCCT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
gi|1 : CTTCACGTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATGAA--ATGG-CAAAAAT---GATGTTTTATCAAGACTAA-TTCTAAATTGCCATAATGTCAAAGTTAA-AGTGGTTATTATATATG-CAT-GATAA-CATTTAGTACACATACATTTAGTACA-CA-TGGGTTTACATATA-ATGCTC-ACATGG-TTCTG------T-A--AATATGATAATA---GTGGTGG-TACG--ATTT---A-GGC----TAGTCGA-TTTAC-----AATTT--TTACTTATT-TGACT------GCATCTTTG-TGT-ATTCTCATCAATATATTTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATCCTGTC-ATAATTAAGATACCCCCAAAAA---TT-ACT----CAGCAGTCCTCTTTCGT-TGATCGCTGGATGCCT-CAAATCAG-CGAGAGATCAATCTTTTCTTGAGTTTG-AGCCCTTTTCATG
gi|10 : TATGTTCACCATTG---G-AT-A-AAGATT-GA-ACGTT--GTT-GATATGAAAGAACCTGTC-ATAAT-AAGATGCCCT--AAAA---TT-ACTGCATC--CAGTGCTCTTTCGTTAGAT-GCTGGATGCCTTCAAAGCAG-CGA-AGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTTTAT
gi|11 : A-AGTGGTT-TC-TATAGGGCAC-AATAAACATTTA--------------AGGAC-----TGAATTTACATACA-ATACTCTAAATGGTTTTTGCGTTATT-A--AACAC-ATAACAT--GTGGT-G-TACAGTATTTGCAA-GGCCG--TAACCAA-
gi|12 : CACT-G-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAG---GATGTTTTATCAAGAC----T----AATTGCCATAATTTCAAAGTTAA-CGTGGTTA-T-TATATG-CAC-GATAA-CATT---------------TAGTATA-CG-TGAGccgatgtgcacccacatttt
gi|13 : AAGGTAA-AGTGGTT-TC-TATAGG-CAC-AATAA-CATTTA---------------GGACA-CG-TGAATTTACATACA-ATACTC-TAATGG-TTTTGCGT---T-ATTAACACAATAACA---GT-GTGG-TACAGTATTTGCAA-GGC----
gi|14 : TG-TGT-ATTCTCATCAATATATCTTCAC-ATTG---GGAT-A-AATATT-GA-ACGTG-TGTT-GATATGAAGAAGACTGcgta
gi|15 : GTC-ATAATTAAGATGCCAT-AAAAT---TT-ACT----CAGCAGTCCTCTTTCGT-AG
gi|16 : GT-AAATTTT-GTACAACTGGATAAA--ATGG-CATAAAG---GATGTTTTAT
gi|17 : AA---TT-ACT----CATTGGTCCTCTTTCGT-AGATCGCTGGATGTC
gi|18 : GGTCAGCCTTTTCTTGAGTTTG-AGCCCTTTTCATGa
gi|2 : TCACTTA-GAGAACGTG-GTGAAATTGT--TACATCTT--CAAA--ATG--CTCAAAT---GTAGTTTTATCAAAGCTAA-T----G---GCCATAATT-CAAAGTTGA-AATGGTTATT--ATATG-CAC-AATGA-CATTTA---------------AGACA-CG-TGAGTTTTCATATA-ATACTT-ACATGG-TTCTG------A-A--TATATGATAAC--------------------TT---A-GGC----TAGCCAG-TTTAC-----AATTT--TT-----------TTT-----TCATCTTTG-TGT-AT--------------GTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATACTGTC-ATAATTAAGATGCCCT--AAAA---TT-ACT----CAGCAGTCCTCTTTCGT-AGATCGCTGGATGCAT-CAAAGCAG-CGAGGAGTCAACATTGTCTTCAGTTTGAAACCCTTTTt
gi|3 : cTTCACTTATGAGAAAGTATGT-AAATTTT-GTACAACTGGATAAA--ATGGACATAAG----GATG-TTTAT-AAGAC----T----AATTGCCATAACTCAAAGGTTAACAGTGGT--TT-TATATG-CACAGATAA-CATT---------------TCGGACA-CG-TGAGTTTAC-TATA-ATGCTC-A-ATGG-TTCTG------TAA--TATATGAATACATGTATGGTGG-TACG--ATTT---ATGGA----TAGTCAT-TTAAC-----AGTTTAGTTACTGATT----CTT-----CTA-----G-TGT-ATTATCATCAATAT-TGTTAAC-ATTGGGTGGATAA-AAGGTT--A-ACG-T-TGTTGGATATGAAGAATCCCGTC--T-ATTAAG-TG--CCTAACTA---TT-A-T----CAG-AGTCGTCTTTCt
gi|4 : TTCATTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAACT---GATGTTTTATCA----TAGCT----AATTGCAATAATTTCGAAGTTAA-AGTAGTTATT--ATATG-CAA-AATAA-CAT--A-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTA------T-A--CATATGATAATA---GTGGTGG-TACG--ATTT---A-GGCTTAGTAGCCAA-T-------------------CTGATTGTGACTT-----GCATCTTTGCTGT-ATCCTCATC------------C-ATTG---GGAT-AGAAGATT-GACACGTCGTGTT-GATAT
gi|5 : CTTCACTT--GAGAAAGTGCAT-AAATTTTTGTACATCTGGATAAATTATGC-GATAAAT---GATGTTTTATCAAGACTAA-T-----GTTGCCATAA---CAAA-TTGT-AGTGGTTA-T-TATATG-CAT-GATTA-CATT---------------TAGTACAGCGTTGAG-TTACATATATATGCTA-ACATGT-TTCTG------T-A--TATATGATAGCA---GTGGTGGTTACG--ATTT---A-AGC----TAGTCAATTTTAC-----AATTT--TTACTGATT-TGA------------CTTTG-TGTGATTC
gi|6 : GTAG-TAAG--ATTT---A-GGC----TAGTCAA-TTTAC-----AATTT--TTACTGATT-TGACTTT----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAAAATCCTGTC-ATAATTAAGATA-CCCTAAAAA---TT-ACT----CAGCAGTCCTCTTTCGT-AGATCGCTGGATGCAT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTTG-AGCCCTTT
gi|7 : G--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAAGAAGCCTGTCCATAATCAAAA-----CCAAAGAGTATTGACT----TGGTGGTCCT--------AGATCGGTGGATGCCT-CAAAACAGGCGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATGac
gi|8 : CG--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGT-ATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAGAAAGCCTGTC-ATAATCAAAA-----CCAAAGAGTATTGACT----TGGTGGTCCT--------AGATCGGTGGATGCCT-CAAAACAG-CGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATG
gi|9 : CTCCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATTTGGATAAA--ATGG----AAGTTAGGATGTTTTATCAAAAC----T----AATTGCCATAATTTCAAAGTTAA-AGTGATTA-C-CATATG-CAC-AATAA-CATTT--------------T-GGACA-TA-TGAGTTTACATACA-GTACTC-ACATGG-TACTG------T-A--TATATGATAACA---GTGGTGG-TACG--A
blockSeqs : AT G T TT A TTAG TAGCTAA T C TCT G A A TAA G T T T A T CGTTAT A TTA TGT T GT GCA T TTAG T T GATTA AG TGT TAAGTT T C G A C GGT A G C C G G A C TGCCCT GTA G GCAT A CA C T T G T T A
blockSeqs : G . . . . G TAATG C . ATT . . . ATA . . . . A . CGT . A T . GT GCA . CG . T GATTA . TT TAAGTT T . . A . . . . C . . . G . TGCCAT GTA G . A CA C . . . T T .
blockSeqs : A . . . . G TAATG T . TCT . . . TA . . . . C . . . T . . . . . . . T . . TT TT T . . A . . . . . . . . T . TGCCCT . . . A TG C . . . G T .
blockSeqs : A . . . . T TAA T . ATT . . . TA . . . . C . . . T . . . . . . . T . . AT T T . . A . . . . . . . . T . TACCCT . . . A CA C . . . T T .
blockSeqs : A . . . . T TAA . . TTT . . . TA . . . . C . . . C . . . . . . . G . . AT T . . . A . . . . . . . . T . TGCCT . . . A CA C . . . G C .
blockSeqs : . . . . . T TAA . . ATT . . . TC . . . . C . . . T . . . . . . . G . . T T . . . . . . . . . . . . G . CC . . . G TG C . G C .
blockSeqs : . . . . . . ATT . . . TA . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . G . CC . . . G TG . .
blockSeqs : . ACC . . . TT . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : TAATG****** ATT** TA*************** TT**** TGCCCT*
originalCons : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAA-T----AATTGCCATAATTTCAAAGTTAA-AGTGGTTATT-TATATG-CAC-GATAA-CATTTA-------------TAGGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT-----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCCCAAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCCT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
finalCons : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAATG------TTGCCATAATTTCAAAGTTAA-AGTGGTTATT--ATATG-CAC-GATAA-CATTTA---------------GGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTTT----GCATCTTTG-TGT-ATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATGCCCT-AAAAA---TT-ACT----CGGCGGTCCTCTTTCGT-AGATCGCTGGATGCCT-CAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
Alignments
lowQualScore : 1111 33333333 22222222222222222 222222 111 11 111 1111 22222 2222 1111 11 111111
lowQualScore : 55 5 5 66 5 1111 77777777 0 3 4 2 66 4 4 4 88888888888888888 4 4 5 5 2 5 333333 5 777 333 0 4 00 444 4 4444 4 3 55555 66 0 555 3 1111 55 5 0 0 1 4 777 4 4 8 4 4 4 1 5 1111 3 22 8 3 111111 1 5 5 6 1 1 5
lowQualScore : .. . . .. . .... ........ . . . . .. . . . ................. . . . . . . ...... . ... ... . . .. ... . .... . . ..... .. . ... . .... .. . . . . . ... . . . . . . . . .... . .. . . ...... . . . . . . .
lowQualScore : 99 0 0 99 0 9999 99999999 1 6 4 2 11 4 4 4 88888888888888888 4 4 0 0 5 0 111111 0 999 888 1 4 00 000 0 0000 4 1 00000 99 1 666 2 2222 22 0 2 1 8 4 888 4 4 9 4 4 4 0 0 0000 2 22 9 4 000000 1 0 7 7 3 4 7
consensus : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAAT------TTGCCATAATTTCAAAGTTAA-AGTGGTTATTATAT--G-CAC-GATAA-CATTT---------------A-GGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT----TGCATCTTTG-TGTATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATG-CCCTAAAA--ATT-ACTCGG----CGGTCCTCTTTCG-TAGATCGCTGGATGCC-TCAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
Reference ( family-422 ) : CTTCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAT---GATGTTTTATCAAGACTAAT-----GTTGCCATAATTTCAAAGTTAA-AGTGGTTATTATAT--G-CAC-GATAA-CATTT---------------A-GGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTG------T-A--NATATGATAACA---GTGGTGG-TACG--ATTT---A-GGC----TAGCCAA-TTTAC-----AATTT--TTACTGATT-TGACTT----TGCATCTTTG-TGTATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAGAANCCTGTC-ATAATTAAGATG-CCCTAAAA--ATT-ACTCGG----CGGTCCTCTTTCG-TAGATCGCTGGATGCC-TCAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTCG-AGCCCTTTTCATG
gi|1 : CTTCACGTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATGAA--ATGG-CAAAAAT---GATGTTTTATCAAGACTAATTCTAAATTGCCATAATGTCAAAGTTAA-AGTGGTTATTATATATG-CAT-GATAA-CATTTAGTACACATACATTTA-GTACA-CA-TGGGTTTACATATA-ATGCTC-ACATGG-TTCTG------T-A--AATATGATAATA---GTGGTGG-TACG--ATTT---A-GGC----TAGTCGA-TTTAC-----AATTT--TTACTTATT-TGAC------TGCATCTTTG-TGTATTCTCATCAATATATTTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATCCTGTC-ATAATTAAGATACCCCCAAAA--ATT-ACTCAG----CAGTCCTCTTTCG-TTGATCGCTGGATGCC-TCAAATCAG-CGAGAGATCAATCTTTTCTTGAGTTTG-AGCCCTTTTCATG
gi|10 : TATGTTCACCATTG---G-AT-A-AAGATT-GA-ACGTT--GTT-GATATGAAAGAACCTGTC-ATAA-TAAGATG-CCCT-AAA--ATT-ACT--GCATCCAGTGCTCTTTCGTTAGAT-GCTGGATGCCTTCAAAGCAG-CGA-AGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTTTAT
gi|11 : A-AGTGGTTTCTATAG--GGCAC-AATAAACATTT---------------AAGGAC-----TGAATTTACATACA-ATACTCTAAATGGTTTTTGCGTTATT-A--AACAC-ATAACAT--GTGGT-G-TACAGTATTTGCAA-GGCCG--TAACCAA-
gi|12 : CACT-G-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAAAG---GATGTTTTATCAAGACTAA-------TTGCCATAATTTCAAAGTTAA-CGTGGTTATTATAT--G-CAC-GATAA-CATTT---------------A-GTATA-CG-TGAGccgatgtgcacccacatttt
gi|13 : AAGGTAA-AGTGGTTTCTATAG--G-CAC-AATAA-CATTT---------------A-GGACA-CG-TGAATTTACATACA-ATACTC-TAATGG-TTTTGCGT---T-ATTAACACAATAACA---GT-GTGG-TACAGTATTTGCAA-GGC----
gi|14 : TG-TGTATTCTCATCAATATATCTTCAC-ATTG---GGAT-A-AATATT-GA-ACGTG-TGTT-GATATGAAGAAGACTGcgta
gi|15 : GTC-ATAATTAAGATG-CCATAAAA--TTT-ACTCAG----CAGTCCTCTTTCG-TAG
gi|16 : GT-AAATTTT-GTACAACTGGATAAA--ATGG-CATAAAG---GATGTTTTAT
gi|17 : A--ATT-ACTCAT----TGGTCCTCTTTCG-TAGATCGCTGGATGTC-
gi|18 : GGTCAGCCTTTTCTTGAGTTTG-AGCCCTTTTCATGa
gi|2 : TCACTTA-GAGAACGTG-GTGAAATTGT--TACATCTT--CAAA--ATG--CTCAAAT---GTAGTTTTATCAAAGCTAAT-----G--GCCATAATT-CAAAGTTGA-AATGGTTATTATAT--G-CAC-AATGA-CATTT---------------A-AGACA-CG-TGAGTTTTCATATA-ATACTT-ACATGG-TTCTG------A-A--TATATGATAAC--------------------TT---A-GGC----TAGCCAG-TTTAC-----AATTT--TT------------TT----TTCATCTTTG-TGTAT--------------GTTCAC-ATTG---GGAT-A-AAGATT-GA-AAGTT-TGTT-GATATGAAGAATACTGTC-ATAATTAAGATG-CCCT-AAA--ATT-ACTCAG----CAGTCCTCTTTCG-TAGATCGCTGGATGCA-TCAAAGCAG-CGAGGAGTCAACATTGTCTTCAGTTTGAAACCCTTTTt
gi|3 : cTTCACTTATGAGAAAGTATGT-AAATTTT-GTACAACTGGATAAA--ATGGACATAAG----GATG-TTTAT-AAGACTAA-------TTGCCATAACTCAAAGGTTAACAGTGGTT-TTATAT--G-CACAGATAA-CATTT---------------C-GGACA-CG-TGAGTTTAC-TATA-ATGCTC-A-ATGG-TTCTG------TAA--TATATGAATACATGTATGGTGG-TACG--ATTT---ATGGA----TAGTCAT-TTAAC-----AGTTTAGTTACTGATT----CTT----------CTAG-TGTATTATCATCAATAT-TGTTAAC-ATTGGGTGGATAA-AAGGTT--A-ACG-T-TGTTGGATATGAAGAATCCCGTC--T-ATTAAG-TG--CCTAACT--ATT-A-TCAG-----AGTCGTCTTTCt
gi|4 : TTCATTTA-GAGAAAGTGCGT-AAATTTT-GTACATCTGGATAAA--ATGG-CATAACT---GATGTTTTATCATAGCTAAT-------TGCAATAATTTCGAAGTTAA-AGTAGTTATTATAT--G-CAA-AATAA-CATAT---------------A-GGACA-CG-TGAGTTTACATACA-ATACTC-ACATGG-TTCTA------T-A--CATATGATAATA---GTGGTGG-TACG--ATTT---A-GGCTTAGTAGCCAA-T-------------------CTGATTGTGAC-T----TGCATCTTTGCTGTATCCTCATC------------C-ATTG---GGAT-AGAAGATT-GACACGTCGTGTT-GATAT
gi|5 : CTTCACTT--GAGAAAGTGCAT-AAATTTTTGTACATCTGGATAAATTATGC-GATAAAT---GATGTTTTATCAAGACTAAT-----GTTGCCATAA---CAAA-TTGT-AGTGGTTATTATAT--G-CAT-GATTA-CATTT---------------A-GTACAGCGTTGAG-TTACATATATATGCTA-ACATGT-TTCTG------T-A--TATATGATAGCA---GTGGTGGTTACG--ATTT---A-AGC----TAGTCAATTTTAC-----AATTT--TTACTGATT-TGACTT----TG
gi|6 : GTAG-TAAG--ATTT---A-GGC----TAGTCAA-TTTAC-----AATTT--TTACTGATT-TGACTT----TGCATCTTTG-TGTATTCTCATCAATATATGTTCAC-ATTG---GGAT-A-AAGATT-GA-ACGTT-TGTT-GATATGAAAAATCCTGTC-ATAATTAAGATA-CCCTAAAA--ATT-ACTCAG----CAGTCCTCTTTCG-TAGATCGCTGGATGCA-TCAAAGCAG-CGAGAGGTCAACCTTTTCTTGAGTTTG-AGCCCTTTtgtgattc
gi|7 : G--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGTATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAAGAAGCCTGTCCATAATCAAAA----CCAAAGAGTATTGACTTGG----TGGTCCT--------AGATCGGTGGATGCC-TCAAAACAGGCGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATGac
gi|8 : CG--GTTT---A-GGC----TAGCCAA-TGTACGATTAAATTT--TGACTGATA-TGACTTAAGTTGCATCT--G-AGTATTTTCACCAATATATGCTCAC-ATTG---GAAC-A-GAGATTCGA-ACATT-TGTT-GCTATGAGAAAGCCTGTC-ATAATCAAAA----CCAAAGAGTATTGACTTGG----TGGTCCT--------AGATCGGTGGATGCC-TCAAAACAG-CGAGAAGTCAACCTTGTCTTGAATTCG-AGCACCTTTCATG
gi|9 : CTCCACTTA-GAGAAAGTGCGT-AAATTTT-GTACATTTGGATAAA--ATGG----AAGTTAGGATGTTTTATCAAAACTAAT-------TGCCATAATTTCAAAGTTAA-AGTGATTACCATAT--G-CAC-AATAA-CATTT---------------T-GGACA-TA-TGAGTTTACATACA-GTACTC-ACATGG-TACTG------T-A--TATATGATAACA---GTGGTGG-TACG--A