lowQualScore : 1111111111111111111 22222222222222 1111111111111 111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 1 4444444444444444444 4 33333333333333 666666 1111111111111 11 2 33 1 66666666666666666 4444444444444444444 666 1 1 999999 1 1 1 4444 1 1 1 11 1 1 33333333 22 1 11 1 11 2 22222 1 1 1 4444444444444444 111 1 1 1 1 1 11 888888 222 11 1 4444 1 222 111 1 11 111111 1 1 2222 333333333333333333333333333333333333 222 1 111111 11 2222 55555555555555555555555 1 2222 11 2222 222 44444444 1 222222 1 55555555555555555 2 11 2 5555 1 3333333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222 1
lowQualScore : 5 5 5 4 6 6 2 2 2 3333333333333333333 6 6 0 6 55555555555555 6 6 6 333333 2 2 2 2 0000000000000 44 0 22 4 4 5 11111111111111111 4 6666666666666666666 4 111 5 5 000000 2 2 4 6 4 6 4 4 88 88 4 2 6 2 2 2 5 3 7 2 5 3 6 2222 6 5 5 88 3 3 4 3 0 8 3 6 55555555 6 77 6 7 6 22 0 3 44 0 6 6 99999 0 66 5 5 3333333333333333 6 3 3 3 777 1 2 0 3 2 8 3 6 1 5 11 888888 666 77 1 2222 5 111 0 1 6 888 3 6 6 2 66 0 999999 0 2 3 1111 999999999999999999999999999999999999 8 2 6 555 9 5 111111 1 6 1 44 9999 22222222222222222222222 0 6 4444 88 8888 333 77777777 3 0 999999 0 77777777777777777 0 2 88 4 4 0 6 0000 1 0 6 3 1111111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 88888 7 7
lowQualScore : . . . . . . . . . ................... . . . . .............. . . . ...... . . . . ............. .. . .. . . . ................. . ................... . ... . . ...... . . . . . . . . .. .. . . . . . . . . . . . . . .... . . . .. . . . . . . . . ........ . .. . . . .. . . .. . . . ..... . .. . . ................ . . . . ... . . . . . . . . . . .. ...... ... .. . .... . ... . . . ... . . . . .. . ...... . . . .... .................................... . . . ... . . ...... . . . .. .... ....................... . . .... .. .... ... ........ . . ...... . ................. . . .. . . . . .... . . . . ....... ...................................................................................................................................................................................................................................................................................................................................................................................................................................... ..... . .
lowQualScore : 0 0 0 0 0 0 5 5 5 5555555555555555555 0 0 0 0 00000000000000 0 0 0 000000 5 5 5 5 0000000000000 55 0 55 0 0 0 00000000000000000 0 5555555555555555555 0 000 0 0 555555 5 5 0 0 0 0 0 0 55 55 0 5 0 5 5 5 0 0 0 5 5 0 0 5555 0 0 5 55 0 0 0 3 7 3 3 0 55555555 0 55 0 0 0 00 7 3 33 0 0 0 55555 5 55 5 0 7777777777777777 0 2 2 2 000 5 0 0 0 0 3 3 0 0 0 33 555555 000 55 5 5555 0 000 7 0 0 000 7 0 0 8 88 2 888888 0 2 0 2222 555555555555555555555555555555555555 8 2 0 222 0 3 777777 0 0 0 00 3333 99999999999999999999999 0 0 3333 33 3333 333 00000000 2 0 222222 0 88888888888888888 0 5 55 0 0 0 0 0000 0 7 7 3 0000000 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33333 3 3
consensus : NCTCAAAGTTATCGAAAATACAGGTGCAGGTGAACNGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCCTNAAANGTGTCGTAATGTAACTGAGAATG--ACATTTT-G---TANCCAACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATTTTATAGGTTCAGTGTACGGNCANCCATTNGTGTTACAATTCCATTAGTCATNGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGGTTTCTGTANNATCAAGCCCGTATATATAGNGTNAGAATTCTTTTTTCTTTNATTTCATTTACATCNGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAANGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTANAG---GTATCAATGACGCTGCCCGGAAAAGGGATANCCGTCNTCGCACACANCCTGGACAATACTGNATGTGCGCACAGGANGCAGGNGTNGATTNACAAATTNGATTGAAATAANCAAATACCCTANAGANAAAGAANAAGCAAGTNAAATCNTCCTGCCAATTAAGAGTACACCTATTCTCAGATCAGAACAGATCTTTTTCANTCCGTGACCNCNGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGA-GGGCATGATGTAATTATATGCCTGCGCGAAACCCAATGATTTCCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAAG-ACGCCATGGGCAGACCAGAATTTTATGNTANNATAGAAGCTGTNAATG--TTG-----CATGCTGCTGATGCCATCTAT-A-ATCAAANCTGTAGTGTAAATTTTC-GNACAGGCAAACACACACCTAAAATAT-TCTC-CCCTCCTCGACCGAAA---CCAGAGGGTGGTANACCTGATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGA-GATNACAAACAACATCAACTGTCAGATN-TCGTTGCT--AT--AATGAAGGGC-CACTGTGNTGATG----CATACT-CGCCTTTTTAC-TGAAAAAGAAATTAT-----ATGAGCATTTTGGGGATGAAATCATCATGACAGAAGA-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TCGA--TTTT-NACGGCT-----TCN-------G-CCCAAAACGGTGGACCAGACATTCGAGAAG--CTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA-TA---AAAT-CGGACATTC-GT-CCTTC--TTAGCTCTATANTTTGNANATTGTACCCTTTCTTGTCGTTANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCC-CGAAG-----GTC-T---TCAAA-----CCTTTTCAAANCTTCCTACACAATCGNNGATCTACTATAAAGGAANCCNGGAGACTGAAGATNGGCTCTGATCGCCGACTCTGGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATNGGTNTAGGNGGCTNCAGCTNCACCACCATTTGTNNCNTTCAAANTTTCTNATCGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-C--GC-GNNNTGC-----GTTTTGAAN-CNAG-TG--CAGCCGTTC--TCACAAGGA-ACGGACA-TT-C-GG------CTTT-----GAA---AAT----GG-GCGATTCCTNCAATTCGTTGCCGACAACGTGGATCACAA
Reference ( gi|1 ) : CCTGAAATTTATCGAAAATACAGTTGCAGGTGAACAGTCATCGTGAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATACCACATTTTTGCACTAAT-AACTACATAATCATAAAACATTATTTTATAGGATACA-TTAAAAATGTGA--------------TTCTTTTACACTGTACTGCTTATTTTGTTTGTTCAGTGTATGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTACTATTAAAC-TGTTTATATAGTGTTAGCATT----TTT--TTCA----ATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTATGATTAATGAATCGGTGACGAGAATGGAAGTTGGTTTGTCTTCGTGCGAATGACAGTGTAGACCCTGTATCAATAATGCTGCCGAGAAAAGGGATAGCCATCTTCGCATACATCCTGAACAATACTGTATGTGCGCACAGAATACAGGCATCAATTTACAAATTCGATTAAAATAAGCAAATATCCTAGAGAGAAATAAAAAGCATGTCAAATCATCCTGTC----AAGAGTACACCTATTATCAGATCAAAACAGATTTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAAATAAAAGA-GGGCGTGATGTA--TAT---CCTGTGCGAA--CCAATGATTTTCAGACTTGTATAAAATCCATCTGTTCTACTAGA-CAAA-ACGCT-TGGGTAAACCAAA--TT-ATGGTAGAATAGAAGCTG-AAATA--TTG-----CATGCTGCTAATGCCATCTAT-A-ATCAAATTTGTGGTGTAAATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCTTGCTCGATCATAGGCTCCA-ACAGTGGTAAACCTG----TTTACAGTGATATTACCGATGCTTTTCTTAAAGTGATGAACTATCTGCAGGAGGATGATGATAAACAGCATCAAGTGTCAGATA-TCGTTGCT--AT--AATAAAGGGC-CACTATGTTGATG----CATACT-TGCCTTTTTACTTCAACAAGAAATTAC-----ATGAGCATGTTGGAGATAAAATCTCCATTACAGAAGATCAAAGAAAATCAGCTGTAATAACAATGCAAAAAACAGCAAGG-TCGA--TTTTCCAAGGCT-----TCT-------G-CCCAAAACGGTGAACCAGACACTCAAGAAG--CTC----AACAT---CATTAC----TA--CTGCTGCT-AAGCTGA-CA---AAAT-CGGACATTCTGTCCCTTTGTCTAGCTTT-TACTTTGTAAAT-GTGCCC---ATTGTCATCACATAT-TGAGT--C--A-CTTGAA---A-AG---AATC----TTC---AGTA-------CGTCCC-TGAAA-----GTC-T---ACAAA-----CCTTTTCAAAAATTCC--CA---TTAAAGA--------AAAGGA-CCCAGGG--TTGAAGATT-GC----ATTG---A--TTGGACAGACAATT---TT---GCTAATGACGAAA-CACGCTCC-ACC-A-CTACAA-ATAGGTCTAGGGG--TGCAGCCCCATCACCA-TT-TGGCA-TCAAACTTTCTTATGGATACGCTGCA--TTC---C--TTA---GTATTTTGG-A-CCT--CATA-TT-C--GC-GTTTTGC-----GTTTTTAAG-CAAG-TA--CAGTCATT---TCACAATGA-ACAGACA-TTCCAGG------CTTT-----AAA---AAA----GG-ACAATTCCTCGAATTCGTCGCCGACAATGTGGATCACAA
gi|2 : CTCAAAGTTATCGAAAATACAGGTGCAAGTGAACTGTCGTCGTAAATGTGAACACGCATATAGAATGATCATTTAAAATTCTTTAAATGTGTCGTAATGTAACTGAGAATA--ACATTTT-------ATCAACTACATAATCATAAAACATTATTTTATAG
gi|4 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCAAATGATCATTTAAAATTCCTGAAAGGTGTCGTAATGTAACTGAGAATG--ACATT---G---TATC-AACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATT------GTTCAGTGTATGGTCAGCCATTCGTATTACAATTCCATTAGTCATGGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGATTTCTGTAAAATTAAGCCTGTA-ATATAGTGTAAGAATT----TTTCTTTCATTTCATTTACATCAGTTCTAACATTGTTTTGAATATGGAAAG---------CTTTG-----TGAATCGGTGACGAGAAAGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATGACACTGCTGGGAAAAAGGATACTCGTCTTCGCACACATCCTGGATAATACTGAATGTGCATACAGAAAACAGGCGTAGATTTACAAATTGGATTGAAATAACCAAATACCCTAGAGATAAAGAACAAGCAAGTAAAA-CATCCTGCC----AAGAGTACACCTATTCTCAGATCAAAATAGATTTTT--CATTTCGTGACCACAGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGA-GGGCATGATGTA--TAT---CTTGCGCGAA--CCAATGATTTCCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAAG-ACGattcagtgtacgggcacccattggtgttacaattccattagtcatcgttggttgtaactttgaatgcggtttctgtattatcaaaccgtatatatagagttagaattcttttttttaaatttacatctgttctaacattgttttgaatatggaaagactagaagactgtgattagtgaatcggtgacgaaaatggactgatttgtcttcgtaagaaggacagtataggtatcaataatgctgcccagaaaaggaatagccatcatcgcacacaacctggacaatactgtatgtgcgcacaggatgcaagggtcgattaacaaattcgattgaaataagcaaatatcctacaaagaaagaaaaagcaagtcaaatcctcctgccaattaagagtacacctattttcaaatagaacagactttttcagtccgtgacccctgccacttttgtgaacagactgccaaacgcaatcaaaataaaagagggcatgattt
gi|2 : gcatttgaatcgatgtaaaccaatttttaaacagacgcaacactcctcaaagTTATTTTATAGATTCAGTGTACGGGCACCCATTGGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTATTATCAAAC-CGTATATATAGAGTTAGAATTCTTTTTT--TTAA----ATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTGTGATTAGTGAATCGGTGACGAAAATGGA--CTGATTTGTCTTCGTAAGAAGGACAGTATAG-----GTATCAATAATGCTGCCCAGAAAAGGAATAGCCATCATCGCACACAACCTGGACAATACTGTATGTGCGCACAGGATGCAAGGGTCGATTAACAAATTCGATTGAAATAAGCAAATATCCTACAAAGAAAGAAAAAGCAAGTCAAATCCTCCTGCCAATTAAGAGTACACCTATTTTCAAAT-AGAACAGA-CTTTTTCAGTCCGTGACCCCTGCCACTTTTGTGA-ACAGACTGCCAAACGCAATCAAAATAAAAGA-GGGCATGAT
gi|13 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatctcaaagttatcgaaaatacaggtgcaagtgaactgtcgtcgtaaatgtgaacacgcatatagaatgatcatttaaaattctttaaatgtgtcgtaatgtaactgagaataacattttatcaactacataatcataaaacaTTTGTGGTACAGACTGCAAATCTCAATTAAATTAAAAGAGGGGCATGATGTAATTATATGCCTGCGCAAAACCTAATGAtt
gi|10 : atcgcaacaaCTACTAGA-CAAG-ACGCT-TGGGCAGACTAGA--TTTATGCTAGAATAGAAG-TGTAAATGATTTG-----CATGCTGCTGATGTCATCCAT-A-ATCAAAATTGTAGTGTAAATTTTC-GCACAGGCAAACACACACCTAAAATAT-TATCTCCCTCCTCGACCGAAA---CCA-AGGGTGGTATACCTAATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGAATGATTACAAACAACATCAAATGGCAGATG-TCATTGCT--AT--GATAAAGAGC-CACTGTGTTGATG----CATACC-CTCCTTTTTACTTGAAAAAGAAAATAT-----ATGAGAATTTTGGGGATGAAATCATCATGACAGAAatgattcaccaga
gi|5 : tgCTACTAAAACAAAGACGCCATGGGCAGATCAAAATTT-ATGATACTAT-GAAGCTG-TAA-A--TTGTTTTCCATGCTGCTGA-GCCATCTATCA-ATCAAACCTGTAATGTAAATTTTC-GCACAGGCAAACACACACCTAAAAAATATCTC-CCTCCTCCG--CAAA----CCAGAGAGT--TAGACCTG----TTGAC-----CTTTACTGACGCTTTTCTTAAAGTGGTGAACTTTCTGCAGGAG---AATAACAAACAACATCAACTGTCAGATCTTTGTTGCTTAACCAAATGAAGGGCGTACTGTG-TGATA----CATGATATGTC------------------AT---------TGAGCATTTTGGGGATGAAAT-TACATGACAGAAGG-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGC
gi|14 : --TTG-----CATGCAGCCGATGCT-TCT-T-ACATCAAAACTGTAGCGTCAATTTTTAGAACAGcaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctctgctcaagctaaaatataaatgctgacattcgtgccttcttagctctatactgaatattgtaccctttcttgttgtcaaatatgtgaaccctatcttcaacgcatagtgcaatctacaatacgtcgcatgacgtctctcgcaatccttttaaagcttcttacatcgtcgatctactataaaggaacccaggactaagattggcatcgactttggacata
gi|8 : ttgagaagtattaatgatCTGATGCCATCTAT-C-ATCACACTTGTGATGTAGATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCCTCCTAGAT
gi|8 : GATATTACTGATGTTTTCCTTGAAGTGGTGAACTATCTGCAGGAGGAGGATGGCAAACAACATCAACTGTCAGATA-TCGTTGCT--AT--AATAAAGGGC-CACTATGCTGATG----CATACT-CGCCTTTTTACGTGAAAAAGAAATTACTGTATATGAGCATGTTGGAGATGAAATCATCATTACAGAAAATCAAAGAA-------------AACAATACAAAAAACAGCAAGA-TCGA--TTTT-CAAGGCT-----TCTACAATCGG-CCCAAAACGGTGGATCAGACATTGAAGAAG--CTC----AACAT---CATTACTTAGTA--CTGCTGCT-AAGCTGA-TA---AAAT-CGGA-----------------TAACTTT-TAATTTGTAAAT-GTACTC---CTTGTCGTTAGATAT-TGAGT--C--A-CTTGAA---A-GG---AATC----TTC---AGTA-------CGTACC-CGAAG-----GCC-T---TAAAA-----CCTTTTCAAAAattactgatgttttccttgaagtggtgaactatctgcaggaggaggatggcaaacaacatcaactgtcagatatcgttgctataataaagggccactatgctgatgcatactcgcctttttacgtgaaaaagaaattactgtatatgagcatgttggagatgaaatcatcattacagaaaatcaaagaaaacaatacaaaaaacagcaagatcgattttcaaggcttctacaatcggcccaaaacggtggatcagacattgaagaagctcaacatcattacttagtactgctgctaagctgataaaatcggataacttttaatttgtaaatgtactccttgtcgttagatattgagtcacttgaaaggaatcttcagtacgtacccgaaggccttaaaaccttttcaaaa
gi|11 : ctgatgccatctatcatcacacttgtgatgtagattttcgaacgggctaacacacacctaaaatattctcaccctcctaAACTGTCAGATC-TGGTTGCT--AA--AATGAAGGGC-TACTGTGGTGATGAAATCATA---TG---------------------TTAT------TGAGCATTTTGGGGATGAAATTATCATGACAGAAGAGCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TC----TTTTATACGA-------TCG-------G-CCCAAAACGGTGGACCAGACTTTTGAGAAG--CTC----AATAT---TATTAC----TA--CTGCTGCT-AAGCTGA-TA---AAAT-
gi|6 : tnaCAGCAAGGCTCAAGCTTTTCAACGGCTCTACATCC-------GGCCCAAAACGGTGGACTAGACA-TC--GAAGGTCTCCGGAAACACATGCATTACCT--TAGCCTGC-GCT-AAGCTGATCT---GAAT-TGGACATTCTGTCTCTTTGTn
gi|17 : -----TCG-------G-CCCAAAACGGTGGACCAGACtggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattacctattgagtgtcacttgaatgaattatcgatattctggagtgacaaaggcgtccctgaaaaggttgttgttcaaaaggcgtctttccaaatttttctacaattaaagaaaaggaacctggagactgaaaatggctctgattgccgactggacagcaattgtcttagggctgaacgaaagcacgttgcgacctatctacaacataggtatagggggctgcagctccatcaccattgtgtcattcaaagtttcttataaatacgtgcagttccggcttaggatggaccttgcatatccttccgttttnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|5 : tttaaagnttttatacgaCTGCTCAAGCTAA-AATATAAATGCTGACATTC-GTGCCTTC--TTAGCTCTATACT--GAATATTGTACCCTTTCTTGTTGTCAAATATGTGAAC--CCTATCTTCAACGCATAGTGCAATC----TAC---AATA-------CGTCGCATGAC------GTC-TCTCGCAAT-----CCTTTT-AAAGCTTCTTACA---TCGTCGATCTACTATAAAGGAACCCAGGA--CT-AAGATTGGC----ATCG---ACTTTGGACAttna
gi|6 : ctactaaaacaaagacgccatgggcagatcaaaatttatgatactatgaagctgtaaattgttttccatgctgctgagccatctatcaatcaaacctgtaatgtaaattttcgcacaggcaaacacacacctaaaaaatatctccctcctccgcaaaccagagagttagacctgttgacctttactgacgcttttcttaaagtggtgaactttctgcaggagaataacaaacaacatcaactgtcagatctttgttgcttaaccaaatgaagggcgtactgtgtgatacatgatatgtcattgagcattttggggatgaaattacatgacagaaggcaaagaaaatcaactgtaataacagtacgaaaaacagccaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctATTACCTAT-TGAGTGTC--A-CTTGAATG-A-AT---TATCGATATTCTGGAGTGACAAAGGCGTCCC-TGAAAAGGTTGTTGT---TCAAAAGGCGTCTTTCCAAATTTTTC--TACAATTAAAGA--------AAAGGA-ACCTGGAGACTGAAAATG-GCTCTGATTGCCGA--CTGGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATAGGTATAGGGGGCTGCAGCTCCATCACCA-TTGTGTCATTCAAAGTTTCTTATAAATACG-TGCAG-TTCCGGC--TTA---GGA---TGG-A-CCTTGCATA-TC-CTTCC-GTTTTNN-----NNNNNNNNN-NNNN-NN--NNNNNNNNTA-TGACAATAT-ACAGAta
gi|3 : cagcaaggctcaagcttttcaacggctctacatccggcccaaaacggtggactagacatcgaaggtctccggaaacacatgcattaccttagcctgcgctaagctgatctgaattggacattctgtctctttgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagTACAA--TCGGTTTAGGCG--TTCAATTACACCACCATTT-TTGCT-TCAAATTTTTTGATCGACACATTGTA--------CAGTTG---GGATTTTG----CCT--CTTC-TTAC--GCAGAGGTGC-----------AAT-CCAG-TG--CAACTGTA---ACCCAAGGA-ACAAATA-TT-----------CTTT-----GGATTCACACCCCGG-GCGATT--TACAATTTGTTGCGGGCAATGTGG--CACAA
gi|7 : ATA-GCTGCACATTC---C--ATAAAGGAATTTTAGTATCCTA-CATACTT-C--GG-AGCCTGCAAAACGTTTTGAAATCAAGATAAACAGCCATTCTCTCACAAGGACAAAGACAATTACAGAAGACTATTTTGACCCAAA---AAT----GGCGCAATTCCTTCAATTCGTTGCCGACAACGTAGATCACAAtgttcgacttttggatggaactctcaatacatttcatgcagggtattattgcgggtctgacaccagcattcgatccaatcagcaaagtttatcgagcgacagtatctaagacgagttggtttggctgggaagattacaaggttgcgtcatcagcaaactctgatatagaaaactctgaaatacaaagaaatcaaaggaactaaaggttatggacaataatggaaatgtgtacctggcttctcaacgtaatctgaaccttaagatcaccaatgcccatgtggtcaggattgatgcaggtatgcatccaaaaggggagtgtatccaggaattcatcaattcaccttcttttcccaatgattgccttgatcctggtggacctaacctgcatcttttccaccctaagcactttgtcaatgggaattgctgaaccgctatgaacaaaggcagtggtaactattcgatcaaccttatatttggaaggcgtgaaaaattatttccatggatcaaagtactaagtccgattcgacgatagtgttgggcttggtggatttccaacactattatgagcttcttggaagcattgggcaatttaatgcgtgggagctaatggttttgcaagatcggtattggaaacagtgtatgcaagtcagctgtcaatcatcattatgctggtgtgaaaggctgttgaaagagccattacgaggtcatt
gi|9 : GCCATT---TCACAAGGA-ATGAACT-TTTCCGG------CTAT-----GAA---AAT----GG--CAATTCTTC-AATTCGT-GTCGACAGTGTGGATTAtgtgcgctcaaactgcatgggtatggtaacatcaattccatccaggtaagggcataattgttgctcacaccttggtacaaaggaatagcaaacggttatcctaaacctttgaatgtttcattcagctgacctggtcactggctgggaaattgataccccatcttaatattctaataaaacaaacccccagaaaccacactaaaattcgtcatcatgcagaatgcgaaatgtctccacaagcaatatagaataggaacagaaataaaacggatgggattccatcttaagtctactacaattaatatttctttcaaagcgattgtatggctcttcgataacttctactccaagttggtcaggactgactgacaggag
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TATAAAAAATCTAATTTAATCTAATGTGCAGAAATACCCTATTTCTATGAAAGAAAATTGCTCATAGCACCCTTTGCTTTATGTCACTGCTGCGCTATCATAATGTGTCA
Unaligned ( gi|15 ): GGCCTTCACTTACACCATGTCTGTTCAACATAGTTTTTGAAATCAGACACATTGTACAGTCGGCAT
Unaligned ( gi|16 ): GTGATANATCATATGTTATTGAGCATTTTGGGGATGAAATTATCATG
Alignments
lowQualScore : 1111111111111
lowQualScore : 111 55555555555 1 55555555555555 222222 0000000000000 2 66666666666666666 11 222 4444 22 1 1 44444444 33 1 1 22 33 1 3333 11 111 1 33 1 222 2 4444 22222 111111 1111 55555555555555555555555555555555555 3 1 11111 4444444444444444444444444 2222 111 3333 11 11111 4444444444444 2 2 333 1 1111111 4444444444 2222 111 3333333 111 333333333333333333 999999999999999999999 1 33 22 11 555555555 2 22222222 22 1 1 222 2 33 3333333 44444444444444444 1111 22 1 1 3333333333333333 11 22222 222222 1 1 7777777777777777777777777777777777777 1 1
lowQualScore : 2 2 1 0 1 1 999 88888888888 0 5 33333333333333 333333 0 1 1 1 1 5555555555555 22 0 0 8 7 1 1 22222222222222222 1 7 1 88888 1 88 6 1 333 0 0 77 1 0 1 1 1 0 11 1 1 1 1 1 0 1 1 1 1 7 1 4444 3 6 0 77 1 1 1 0 4 0 11111111 00 4 0 0 44 0 00 7 1 22 3 5 44 1111 33 0 0 0 111 1 8 1 4 0 22 8 3 333 3 0 6 1 4444 7 77777 1 99 222222 8 8 7777 8 55555555555555555555555555555555555 1 0 3 0 0 55555 7777777777777777777777777 7 0 1111 777 5555 33 0 8 66666 8 2 6666666666666 0 3 1 7 1 1 3 777 1 0 8888888 1111111111 1111 777 2222222 4 444 111111111111111111 2 44 777777777777777777777 7 4 1 00 6 00 99 555555555 0 33333333 77 5 5 2 222 3 1 1 1 00 1 1 0 7 2222222 1 1 6 2 6 22222222222222222 0 3 9999 33 0 0 0000000000000000 6 44 1 33333 2 333333 0 22 0 8888888888888888888888888888888888888 0 2 5 1 3 2 3
lowQualScore : . . . . . . ... ........... . . .............. ...... . . . . . ............. .. . . . . . . ................. . . . ..... . .. . . ... . . .. . . . . . . .. . . . . . . . . . . . . .... . . . .. . . . . . . ........ .. . . . .. . .. . . .. . . .. .... .. . . . ... . . . . . .. . . ... . . . . .... . ..... . .. ...... . . .... . ................................... . . . . . ..... ......................... . . .... ... .... .. . . ..... . . ............. . . . . . . . ... . . ....... .......... .... ... ....... . ... .................. . .. ..................... . . . .. . .. .. ......... . ........ .. . . . ... . . . . .. . . . . ....... . . . . . ................. . . .... .. . . ................ . .. . ..... . ...... . .. . ..................................... . . . . . . .
lowQualScore : 5 5 0 7 0 0 000 00000000000 7 5 00000000000000 777777 7 0 0 0 0 3333333333333 00 7 7 7 3 0 0 33333333333333333 0 3 0 00000 0 33 7 0 333 7 7 33 0 7 0 0 0 7 77 0 0 0 0 0 7 0 0 0 0 3 0 7777 7 7 7 33 0 0 0 0 0 0 00000000 33 0 0 0 33 7 77 3 0 00 2 0 22 5555 88 8 8 8 888 0 0 0 0 0 55 8 3 333 3 7 7 0 7777 3 55555 0 00 222222 0 8 0000 0 99999999999999999999999999999999999 7 0 2 8 0 00000 0000000000000000000000000 0 2 2222 555 8888 88 8 0 88888 0 5 8888888888888 7 7 0 3 0 0 7 777 0 0 5555555 0000000000 2222 555 5555555 2 000 888888888888888888 5 77 777777777777777777777 3 0 0 33 7 77 77 333333333 0 00000000 55 0 0 5 000 3 0 0 0 00 0 0 7 3 0000000 0 0 7 5 5 22222222222222222 2 2 5555 88 0 0 0000000000000000 7 33 0 33333 0 000000 0 22 0 0000000000000000000000000000000000000 0 0 0 0 2 0 2
consensus : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--GTTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATT--TTTTTC-TT-A----ATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGAGGG-CATGATGTA--TAT---CCTGCGCGAA--CCAATGATTTCCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA--TTTATGNTAGAATAGAAGCTGTAAAT-GATTTG--CATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATG-ATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATG----CAT-ACTCGCCTTTTTACTTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------CG-------GCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGT-CCCTCT---TAGCTTT-TACTTTGTAAA-TGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTAC---ATTAAAGA--------AAAGGAACCCAG--GACTGAAGATTGGC-CTGAT---CGACT-TGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGT-GCATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----GTTTT-AAN-CAAG-TA--CAGCCGTT-TC--ACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-A---TGG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
Reference ( family-4188 ) : NCTCAAAGTTATCGAAAATACAGGTGCAGGTGAACNGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCCTNAAANGTGTCGTAATGTAACTGAGAATG--ACATTTT-GTANC--CAACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATTTTATAGGTTCAGTGTACGGNCANCCATTNGTGTTACAATTCCATTAGTCATNGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGGTTTCTGTANNATCAAGCCCGTATATATAGNGTNAGAATTCTTTTTTCTTTNATTTCATTTACATCNGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAANGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTANAG---GTATCAATGACGCTGCCCGGAAAAGGGATANCCGTCNTCGCACACANCCTGGACAATACTGNATGTGCGCACAGGANGCAGGNGTNGATTNACAAATTNGATTGAAATAANCAAATACCCTANAGANAAAGAANAAGCAAGTNAAATCNTCCTGCCAATTAAGAGTACACCTATTCTCAGATCAGAACAGATCTTTTTCANTCCGTGACCNCNGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGAGGG-CATGATGTAATTATATGCCTGCGCGAAACCCAATGATTTCCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAA-GACGCCATGGGCAGACCAGAATTTTATGNTANNATAGAAGCTGTNAAT-G--TTG--CATGCTGCTGATGCCATCTAT-A-ATCAAANCTGTAGTGTAAATTTTC-GNACAGGCAAACACACACCTAAAATAT-TCTC-CCCTCCTCGACCG-AAA---CCAGAGGGTGGTANACCTGATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGA-G-ATNACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATGAAGGGC-CACTGTGNTGATG----CAT-ACTCGCCTTTTTAC-TGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGA-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TCGA---TTTT-N-ACGGCTT------CN-------GCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TA-AAAT-CGGACATTC-GT-CCTTCT---TAGCTCTATANTTTGNANATTGTACCCTTTCTTGTCGTTANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANCTTCCTACACAATCGNNGATCTACTATAAAGGAANCCNGGAGACTGAAGATNGGCTCTGATCGCCGACTCTGGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATNGGTNTAGGNGGCTNCAGCTNCACCACCATTTGTNNCNTTCAAANTTTCTNATCGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNNTGC-----GTTTTGAAN-CNAG-TG--CAGCCGTTCTC--ACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-A---TGG-GCGATTCCTNCAATTCGTTGCCGACAACGTGGATCACAA
gi|1 : CTGAAATTTATCGAAAATACAGTTGCAGGTGAACAGTCATCGTGAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATACCACATTTTTGCACTAATAACTACATAATCATAAAACATTATTTTATAGGATACA-TTAAAAATGTGA--------------TTCTTTTACACTGTACTGCTTATTTTGTTTGTTCAGTGTATGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTACTATTAAACT-GTTTATATAGTGTTAGCATT--TTTTTC----A----ATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTATGATTAATGAATCGGTGACGAGAATGGAAGTTGGTTTGTCTTCGTGCGAATGACAGTGTAGACCCTGTATCAATAATGCTGCCGAGAAAAGGGATAGCCATCTTCGCATACATCCTGAACAATACTGTATGTGCGCACAGAATACAGGCATCAATTTACAAATTCGATTAAAATAAGCAAATATCCTAGAGAGAAATAAAAAGCATGTCAAATCATCCTGTC----AAGAGTACACCTATTATCAGATCAAAACAGATTTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAAATAAAAGAGGG-CGTGATGTA--TAT---CCTGTGCGAA--CCAATGATTTTCAGACTTGTATAAAATCCATCTGTTCTACTAGA-CAA-AACGCT-TGGGTAAACCAAA---TTATGGTAGAATAGAAGCTG-AAAT-A--TTG--CATGCTGCTAATGCCATCTAT-A-ATCAAATTTGTGGTGTAAATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCTTGCTCGATCA-TAGGCTCCA-ACAGTGGTAAACCTG----TTTACAGTGATATTACCGATGCTTTTCTTAAAGTGATGAACTATCTGCAGGAGGATG-ATGATAAACAGCATCAAGTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGTTGATG----CAT-ACTTGCCTTTTTACTTCAACAAGAAATTA-----CATGAGCATGTTGGAGATAAAATCTCCATTACAGAAGATCAAAGAAAATCAGCTGTAATAACAATGCAAAAAACAGCAAGG-TCGA---TTTTCC-AAGGCTT------CT-------GCCCAAAACGGTGAACCAGACACTCAAGAAGCTC----AACAT---CATTAC----TA--CTGCTGCT-AAGCTGA--CA-AAAT-CGGACATTCTGT-CCCTTTGTCTAGCTTT-TACTTTGTAAA-TGTGCCC---ATTGTCATCACATAT-TGAGT--C--A-CTTGAA---A-AG---AATC----TTC---AGTA-------CGTCCCTGAA--AGTC----TA---CAAA-----CCTTTTCAAAAATTCCC-----ATTAAAGA--------AAAGG-ACCCAG--GGTTGAAGATT-GCATTGAT---------TGGACAGACAATT---TT---GCTAATGACGAAA-CACGCT-CCACC-A-CTACAA-ATAGGTCTAGGGG--TGCAGCCCCATCACCATTTG--GCA-TCAAACTTTCTTATGGATACGCTGCA--TTC---C--TTA---GTATTTTGG-A-CCT--CATA-TT-CGC-GTTTTGC-----GTTTTTAAG-CAAG-TA--CAGTCATT-TC--ACAATGA-ACAGAC-ATT--CCAGG-------CTTTA-----AA---A-A---AGG-ACAATTCCTCGAATTCGTCGCCGACAATGTGGATCACAA
gi|10 : cCTACTAGA-CAA-GACGCT-TGGGCAGACTAGA--TTTATGCTAGAATAGAAG-TGTAAAT-GATTTG--CATGCTGCTGATGTCATCCAT-A-ATCAAAATTGTAGTGTAAATTTTC-GCACAGGCAAACACACACCTAAAATAT-TATCTCCCTCCTCGACCG-AAA---CCA-AGGGTGGTATACCTAATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGAATG-ATTACAAACAACATCAAATGGCAGAT-GTCATTGCT--AT--GATAAAGAGC-CACTGTGTTGATG----CAT-ACCCTCCTTTTTACTTGAAAAAGAAAATA-----TATGAGAATTTTGGGGATGAAATCATCATGACAGAA
gi|11 : tgAACTGTCAGAT-CTGGTTGCT--AA--AATGAAGGGC-TACTGTGGTGATGAAATCAT-A--------------TG---------TTA-----T-TGAGCATTTTGGGGATGAAATTATCATGACAGAAGAGCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TC-----TTTTAT-ACGA--T------CG-------GCCCAAAACGGTGGACCAGACTTTTGAGAAGCTC----AATAT---TATTAC----TA--CTGCTGCT-AAGCTGA--TA-AAAT-
gi|13 : tnaTTTGTGGTACAGACTGCAAATCTCAATTAAATTAAAAGAGGGGCATGATGTAATTATATGCCTGCGCAAAACCTAATGAn
gi|14 : atcgcaacaaAGAAG-TATTAAT-GATTTG--CATGCAGCCGATGCT-TCT-T-ACATCAAAACTGTAGCGTCAATTTTTAGAACAGatgattcaccaga
gi|16 : ttgTTA-----T-TGAGCATTTTGGGGATGAAATTATCATG
gi|17 : gtgatanatcatatgGN---TTTT-ATACGA--T------CG-------GCCCAAAACGGTGGACCAGAC
gi|2 : tttaaaCTCAAAGTTATCGAAAATACAGGTGCAAGTGAACTGTCGTCGTAAATGTGAACACGCATATAGAATGATCATTTAAAATTCTTTAAATGTGTCGTAATGTAACTGAGAATA--ACATTTT-AT-----CAACTACATAATCATAAAACATTATTTTATAGAttna
gi|2 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatTTATTTTATAGATTCAGTGTACGGGCACCCATTGGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTATTATCAAACC-GTATATATAGAGTTAGAATTCTTTTTT--TTAA----ATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTGTGATTAGTGAATCGGTGACGAAAATGGA--CTGATTTGTCTTCGTAAGAAGGACAGT--ATAG---GTATCAATAATGCTGCCCAGAAAAGGAATAGCCATCATCGCACACAACCTGGACAATACTGTATGTGCGCACAGGATGCAAGGGTCGATTAACAAATTCGATTGAAATAAGCAAATATCCTACAAAGAAAGAAAAAGCAAGTCAAATCCTCCTGCCAATTAAGAGTACACCTATTTTCAAAT-AGAACAGA-CTTTTTCAGTCCGTGACCCCTGCCACTTTTGTGA-ACAGACTGCCAAACGCAATCAAAATAAAAGAGGG-CATGATttcagtgtacgggcacccattggtgttacaattccattagtcatcgttggttgtaactttgaatgcggtttctgtattatcaaaccgtatatatagagttagaattcttttttttaaatttacatctgttctaacattgttttgaatatggaaagactagaagactgtgattagtgaatcggtgacgaaaatggactgatttgtcttcgtaagaaggacagtataggtatcaataatgctgcccagaaaaggaatagccatcatcgcacacaacctggacaatactgtatgtgcgcacaggatgcaagggtcgattaacaaattcgattgaaataagcaaatatcctacaaagaaagaaaaagcaagtcaaatcctcctgccaattaagagtacacctattttcaaatagaacagactttttcagtccgtgacccctgccacttttgtgaacagactgccaaacgcaatcaaaataaaagagggcatgattt
gi|3 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatctcaaagttatcgaaaatacaggtgcaagtgaactgtcgtcgtaaatgtgaacacgcatatagaatgatcatttaaaattctttaaatgtgtcgtaatgtaactgagaataacattttatcaactacataatcataaaacaTACAA--TCGGTTTAGGCG--TTCAATTACACCACCATTT-TTGC-TTCAAATTTTTTGATCGACACATTGTA--------CAGTTG---GGATTTTG----CCT--CTTC-TTACGCAGAGGTGC-----------AAT-CCAG-TG--CAACTGTAACC---CAAGGA-ACAAAT-ATT--------------CTTTG-----GATTCACACCCCGG-GCGATT--TACAATTTGTTGCGGGCAATGTGG--CACAAtt
gi|4 : AAGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCAAATGATCATTTAAAATTCCTGAAAGGTGTCGTAATGTAACTGAGAATG--ACATT---GTATC---AACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATT------GTTCAGTGTATGGTCAGCCATTCGTATTACAATTCCATTAGTCATGGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGATTTCTGTAAAATTAAGCCTGTA-ATATAGTGTAAGAATT----TTTCTTTCATTTCATTTACATCAGTTCTAACATTGTTTTGAATATGGAAAG---------CTTTG-----TGAATCGGTGACGAGAAAGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATGACACTGCTGGGAAAAAGGATACTCGTCTTCGCACACATCCTGGATAATACTGAATGTGCATACAGAAAACAGGCGTAGATTTACAAATTGGATTGAAATAACCAAATACCCTAGAGATAAAGAACAAGCAAGTAAAA-CATCCTGCC----AAGAGTACACCTATTCTCAGATCAAAATAGA--TTTTTCATTTCGTGACCACAGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGAGGG-CATGATGTA--TAT---CTTGCGCGAA--CCAATGATTTCCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAA-GACGtgttcgacttttggatggaactctcaatacatttcatgcagggtattattgcgggtctgacaccagcattcgatccaatcagcaaagtttatcgagcgacagtatctaagacgagttggtttggctgggaagattacaaggttgcgtcatcagcaaactctgatatagaaaactctgaaatacaaagaaatcaaaggaactaaaggttatggacaataatggaaatgtgtacctggcttctcaacgtaatctgaaccttaagatcaccaatgcccatgtggtcaggattgatgcaggtatgcatccaaaaggggagtgtatccaggaattcatcaattcaccttcttttcccaatgattgccttgatcctggtggacctaacctgcatcttttccaccctaagcactttgtcaatgggaattgctgaaccgctatgaacaaaggcagtggtaactattcgatcaaccttatatttggaaggcgtgaaaaattatttccatggatcaaagtactaagtccgattcgacgatagtgttgggcttggtggatttccaacactattatgagcttcttggaagcattgggcaatttaatgcgtgggagctaatggttttgcaagatcggtattggaaacagtgtatgcaagtcagctgtcaatcatcattatgctggtgtgaaaggctgttgaaagagccattacgaggtcatt
gi|5 : gcatttgaatcgatgtaaaccaatttttaaacagacgcaacactcctcaCTACTAAAACAAAGACGCCATGGGCAGATCAAAATTT-ATGATACTAT-GAAGCTGTAAATTG--TTTTCCATGCTGCTGA-GCCATCTATCA-ATCAAACCTGTAATGTAAATTTTC-GCACAGGCAAACACACACCTAAAAAATATCT--CCCTCCT---CCGCAAA---CCAGAGAGT--TAGACCTG----TTGAC-----CTTTACTGACGCTTTTCTTAAAGTGGTGAACTTTCTGCAGGAG---A-ATAACAAACAACATCAACTGTCAGATCTTTGTTGCTTAACCAAATGAAGGGCGTACTGTG-TGATA----CATGA----------TA--TG---------TCA-----T-TGAGCATTTTGGGGATGAAATTA-CATGACAGAAGG-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGC
gi|5 : CTGCTCAAGCTAAAATATAAATGCTGACATTC-GTGCCTTCT---TAGCTCTATACT--GAATATTGTACCCTTTCTTGTTGTCAAATATGTGAAC--CCTATCTTCAACGCATAGTGCAATC----TAC---AATA-------CGTCGCATGA--CGTC----TCTCGCAAT-----CCTTTT-AAAGCTTCTTAC---ATCGTCGATCTACTATAAAGGAACCCAG--GACT-AAGATTGGC----AT---CGACTTTGGACAcaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctctgctcaagctaaaatataaatgctgacattcgtgccttcttagctctatactgaatattgtaccctttcttgttgtcaaatatgtgaaccctatcttcaacgcatagtgcaatctacaatacgtcgcatgacgtctctcgcaatccttttaaagcttcttacatcgtcgatctactataaaggaacccaggactaagattggcatcgactttggacata
gi|6 : ctactaaaacaaagacgccatgggcagatcaaaatttatgatactatgaagctgtaaattgttttccatgctgctgagccatctatcaatcaaacctgtaatgtaaattttcgcacaggcaaacacacacctaaaaaatatctccctcctccgcaaaccagagagttagacctgttgacctttactgacgcttttcttaaagtggtgaactttctgcaggagaataacaaacaacatcaactgtcagatctttgttgcttaaccaaatgaagggcgtactgtgtgatacatgatatgtcattgagcattttggggatgaaattacatgacagaaggcaaagaaaatcaactgtaataacagtacgaaaaacagccaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctCAGCAAGGCTCAAGCTTTTC-A-ACGGCTCTACATCCG-------GCCCAAAACGGTGGACTAGACA-TCGAAGGTCTCCGGAAACACATGCATTACCT--TAGCCTGC-GCT-AAGCTGA--TCTGAAT-TGGACATTCTGT-C--TCT---Tta
gi|6 : TTACCTAT-TGAGTGTC--A-CTTGAATG-A-AT---TATCGATATTCTGGAGTGACAAAGGCGTCCCTGAAAAGGTTGTTGTT---CAAAAGGCGTCTTTCCAAATTTTTCTACA--ATTAAAGA--------AAAGGAA-CCTGGAGACTGAAAAT-GGCTCTGATTGCCGACT--GGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATAGGTATAGGGGGCTGCAGCTCCATCACCA-TTGTGTCATTCAAAGTTTCTTATAAATACG-TGCAG-TTCCGGC--TTA---GGA---TGG-A-CCTTGCATA-TC-C------TTCC-----GTTTTtgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattacctattgagtgtcacttgaatgaattatcgatattctggagtgacaaaggcgtccctgaaaaggttgttgttcaaaaggcgtctttccaaatttttctacaattaaagaaaaggaacctggagactgaaaatggctctgattgccgactggacagcaattgtcttagggctgaacgaaagcacgttgcgacctatctacaacataggtatagggggctgcagctccatcaccattgtgtcattcaaagtttcttataaatacgtgcagttccggcttaggatggaccttgcatatccttccgttttnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|7 : cagcaaggctcaagcttttcaacggctctacatccggcccaaaacggtggactagacatcgaaggtctccggaaacacatgcattaccttagcctgcgctaagctgatctgaattggacattctgtctctttgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagaATA-GCTGCACATTC---C--ATAAAGGAATTTTAGTATCCTA-CATACTT-CGG-AGCCTGCAAAACGTTTTGAAATCAAGATAAACAGCCATTCTCTCACAAGGACAAAGACAATTA-C--AGAAGACTATTTTGACCCAAA---A-A---TGGCGCAATTCCTTCAATTCGTTGCCGACAACGTAGATCACAAnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|8 : CTGATGCCATCTAT-C-ATCACACTTGTGATGTAGATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCCTCCTAGAtgtgcgctcaaactgcatgggtatggtaacatcaattccatccaggtaagggcataattgttgctcacaccttggtacaaaggaatagcaaacggttatcctaaacctttgaatgtttcattcagctgacctggtcactggctgggaaattgataccccatcttaatattctaataaaacaaacccccagaaaccacactaaaattcgtcatcatgcagaatgcgaaatgtctccacaagcaatatagaataggaacagaaataaaacggatgggattccatcttaagtctactacaattaatatttctttcaaagcgattgtatggctcttcgataacttctactccaagttggtcaggactgactgacaggag
gi|8 : GATATTACTGATGTTTTCCTTGAAGTGGTGAACTATCTGCAGGAGGA-GGATGGCAAACAACATCAACTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGCTGATG----CAT-ACTCGCCTTTTTACGTGAAAAAGAAATTACTGTATATGAGCATGTTGGAGATGAAATCATCATTACAGAAAATCAAAGAAAA-------------CAATACAAAAAACAGCAAGA-TCGA---TTTT-C-AAGGCTT------CTACAATCGGCCCAAAACGGTGGATCAGACATTGAAGAAGCTC----AACAT---CATTACTTAGTA--CTGCTGCT-AAGCTGA--TA-AAAT-CGGA------------------TAACTTT-TAATTTGTAAA-TGTACTC---CTTGTCGTTAGATAT-TGAGT--C--A-CTTGAA---A-GG---AATC----TTC---AGTA-------CGTACCCGAA--GGCC----TT---AAAA-----CCTTTTCAAAtattactgatgttttccttgaagtggtgaactatctgcaggaggaggatggcaaacaacatcaactgtcagatatcgttgctataataaagggccactatgctgatgcatactcgcctttttacgtgaaaaagaaattactgtatatgagcatgttggagatgaaatcatcattacagaaaatcaaagaaaacaatacaaaaaacagcaagatcgattttcaaggcttctacaatcggcccaaaacggtggatcagacattgaagaagctcaacatcattacttagtactgctgctaagctgataaaatcggataacttttaatttgtaaatgtactccttgtcgttagatattgagtcacttgaaaggaatcttcagtacgtacccgaaggccttaaaaccttttcaaaa
gi|9 : ctgatgccatctatcatcacacttgtgatgtagattttcgaacgggctaacacacacctaaaatattctcaccctcctaGCCATT-TC--ACAAGGA-ATGAAC-TTTTCC--GG-------CTATG-----AA---A-A---T-G-GCAATT-CTTCAATTCG-TGTCGACAGTGTGGATTAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATAAAAAATCTAATTTAATCTAATGTGCAGAAATACCCTATTTCTATGAAAGAAAATTGCTCATAGCACCCTTTGCTTTATGTCACTGCTGCGCTATCATAATGTGTCA
Unaligned ( gi|15 ): GGCCTTCACTTACACCATGTCTGTTCAACATAGTTTTTGAAATCAGACACATTGTACAGTCGGCAT
Alignments
lowQualScore : 11 55555555555 1 55555555555555 444444444 7777777777777 1 11 444444 11 222 2222 22 1 1 11 222 1 33333 1 1 1 1 22 1 111 111 1 1 222 1 2222 111111 1111 33333333333333333333333333333333333 1 11111 444444444444444444444444 2222 111 3333 11 22222 2222222222222 1 1 222 1 1111111 4444444444 2222 111 3333333 111 333333333333333333 1 44444444 1 11 555555555 22 1 22222222 11 1 1 222 22 11 1111 44444444444444444 1111 22 1 1 44444444444444444444444 11111 111 1 1 7777777777777777777777777777777777777 1 1
lowQualScore : 1 1 88 66666666666 0 5 33333333333333 111111111 0 3333333333333 1 3 7 88 333333 7 1 88888 88 6 333 0 0 7 8888 1 6 55 0 1 0 88 333 3 33333 3 1 0 0 3 00 1 3 5 3 333 0 0 0 111 1 8 0 1 0 9 2 3 3 333 3 6 1 8888 7 6 3 0 99 222222 8 8 7777 55555555555555555555555555555555555 1 9 3 0 0 55555 666666666666666666666666 33 1111 777 5555 33 0 8 11111 8 2 5555555555555 3 7 3 333 1 0 8888888 1111111111 1111 777 2222222 4 444 111111111111111111 2 22 7 3 88888888 7 3 6 44 555555555 00 7 5 33333333 88 5 5 1 222 00 1 88 7 7 8888 1 1 2 6 22222222222222222 0 3 9999 33 0 0 11111111111111111111111 1 88888 2 777 0 22 0 8888888888888888888888888888888888888 0 5 1 3 3
lowQualScore : . . .. ........... . . .............. ......... . ............. . . . .. ...... . . ..... .. . ... . . . .... . . .. . . . .. ... . ..... . . . . . .. . . . . ... . . . ... . . . . . . . . . ... . . . .... . . . . .. ...... . . .... ................................... . . . . . ..... ........................ .. .... ... .... .. . . ..... . . ............. . . . ... . . ....... .......... .... ... ....... . ... .................. . .. . . ........ . . . .. ......... .. . . ........ .. . . . ... .. . .. . . .... . . . . ................. . . .... .. . . ....................... . ..... . ... . .. . ..................................... . . . . .
lowQualScore : 0 0 33 00000000000 7 5 00000000000000 000000000 7 3333333333333 0 3 3 33 000000 3 0 00000 33 7 333 7 7 3 3333 0 7 33 0 0 0 33 333 3 33333 3 0 0 0 3 77 0 2 0 2 888 8 8 8 888 0 0 6 0 0 8 5 7 3 333 3 7 0 3333 3 5 0 2 00 222222 0 6 0000 77777777777777777777777777777777777 7 2 2 8 0 00000 000000000000000000000000 55 2222 555 8888 88 8 0 22222 0 5 0000000000000 3 3 3 333 0 0 5555555 0000000000 2222 555 5555555 2 000 888888888888888888 5 00 3 3 33333333 3 3 7 00 777777777 00 3 5 00000000 00 0 0 0 000 77 0 33 3 3 0000 0 0 5 5 22222222222222222 2 2 5555 88 0 0 55555555555555555555555 0 77777 0 555 0 22 0 0000000000000000000000000000000000000 0 0 2 2 2
consensus : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATG----CATACTCGCCTTTTTACNTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTC-TGTCCCTTT---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
Reference ( family-4188 ) : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATG----CATACTCGCCTTTTTACTTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTC-TGTCCCTCT---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCAG-GACTGAAGATTGGC-CTGAT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AANCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
gi|1 : CTGAAATTTATCGAAAATACAGTTGCAGGTGAACAGTCATCGTGAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATACCACATTTTTGCACTAATAACTACATAATCATAAAACATTATTTTATAGGATACA-TTAAAAATGTGA--------------TTCTTTTACACTGTACTGCTTATTTTGTTTG--TTCAGTGTATGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTACTATTAAACT-GTTTATATAGTGTTAGCATTTTT--TTC------AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTATGATTAATGAATCGGTGACGAGAATGGAAGTTGGTTTGTCTTCGTGCGAATGACAGTGTAGACCCTGTATCAATAATGCTGCCGAGAAAAGGGATAGCCATCTTCGCATACATCCTGAACAATACTGTATGTGCGCACAGAATACAGGCATCAATTTACAAATTCGATTAAAATAAGCAAATATCCTAGAGAGAAATAAAAAGCATGTCAAATCATCCTGTC----AAGAGTACACCTATTATCAGATCAAAACAGATTTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAAATAAAAGA-GGGCGTGATGTA--TAT---CCTGTGC-GAACC-----AATGATTT-TCAGACTTGTATAAAATCCATCTGTTCTACTAGA-CAA-AACGCT-TGGGTAAACCAAA--TTATGGTAGAATAGAAGCTG-AAAT-A--TTGCATGCTGCTAATGCCATCTAT-A-ATCAAATTTGTGGTGTAAATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCTTGCTCGATCA-TAGGCTCCA-ACAGTGGTAAACCTG----TTTACAGTGATATTACCGATGCTTTTCTTAAAGTGATGAACTATCTGCAGGAGGATGATGATAAACAGCATCAAGTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGTTGATG----CATACTTGCCTTTTTACTTCAACAAGAAATTA-----CATGAGCATGTTGGAGATAAAATCTCCATTACAGAAGATCAAAGAAAATCAGCTGTAATAACAATGCAAAAAACAGCAAGG-TCGA---TTTTCC-AAGGCTT------C-------TGCCCAAAACGGTGAACCAGACACTCAAGAAGCTC----AACAT---CATTAC----TA--CTGCTGCT-AAGCTGA--CA-AAAT-CGGACATTC-TGTCCCTTTGTCTAGCTTT-TACTTTGTA-AATGTGCCC---ATTGTCATCACATAT-TGAGT--C--A-CTTGAA---A-AG---AATC----TTC---AGTA-------CGTCCCTGAA--AGTC----TA---CAAA-----CCTTTTCAAAAATTCC--CA-TTAAAGA--------AAAGG-ACCCAG-GGTTGAAGATT-GC----AT---TGA--TTGGACAGACAATT---TT---GCTAATGACGAAA-CACGCT-CCACC-A-CTACAA-ATAGGTCTAGGGG--TGCAGCCCCATCACCATTTG-G-CA-TCAAACTTTCTTATGGATACGCTGCA--TTC---C--TTA---GTATTTTGG-A-CCT--CATA-TT-CGC-GTTTTGC-----GTTTTT--AAGCAAG-TA--CAGTCATT---TCACAATGA-ACAGAC-ATT--CCAGG-------CTTTA-----AA---A-AA---GG-ACAATTCCTCGAATTCGTCGCCGACAATGTGGATCACAA
gi|10 : cCTACTAGA-CAA-GACGCT-TGGGCAGACTAGA-TTTATGCTAGAATAGAAG-TGTAAAT-GATTTGCATGCTGCTGATGTCATCCAT-A-ATCAAAATTGTAGTGTAAATTTTC-GCACAGGCAAACACACACCTAAAATAT-TATCTCCCTCCTCGACCG-AAA---CCA-AGGGTGGTATACCTAATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGAATGATTACAAACAACATCAAATGGCAGAT-GTCATTGCT--AT--GATAAAGAGC-CACTGTGTTGATG----CATACCCTCCTTTTTACTTGAAAAAGAAAATA-----TATGAGAATTTTGGGGATGAAATCATCATGACAGAA
gi|11 : tgAACTGTCAGAT-CTGGTTGCT--AA--AATGAAGGGC-TACTGTGGTGATGAAATCATA--------------TG---------TTA-----T-TGAGCATTTTGGGGATGAAATTATCATGACAGAAGAGCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TC-----TTTTAT-ACGA--T------C-------GGCCCAAAACGGTGGACCAGACTTTTGAGAAGCTC----AATAT---TATTAC----TA--CTGCTGCT-AAGCTGA--TA-AAAT-
gi|13 : tnaTTTGTGGTACAGACTGCAAATCTCAATTAAATTAAAAGAGGGGCATGATGTAATTATATGCCTGCGCAAAACCTAATGAATGATTCACCAGAn
gi|14 : atcgcaacaaAGAAG-TATTAAT-GATTTGCATGCAGCCGATGCT-TCT-T-ACATCAAAACTGTAGCGTCAATTTTTAGAACAG
gi|16 : ttgTTA-----T-TGAGCATTTTGGGGATGAAATTATCATG
gi|17 : gtgatanatcatatgGN---TTTT-ATACGA--T------C-------GGCCCAAAACGGTGGACCAGAC
gi|2 : tttaaaCTCAAAGTTATCGAAAATACAGGTGCAAGTGAACTGTCGTCGTAAATGTGAACACGCATATAGAATGATCATTTAAAATTCTTTAAATGTGTCGTAATGTAACTGAGAATA--ACATTTT-AT-----CAACTACATAATCATAAAACATTATTTTATAGAttna
gi|2 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatTTATTTTAT--AGATTCAGTGTACGGGCACCCATTGGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTATTATCAAACC-GTATATATAGAGTTAGAATTCTT--TTT--TTTAAATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTGTGATTAGTGAATCGGTGACGAAAATGGA--CTGATTTGTCTTCGTAAGAAGGACAGT--ATAG---GTATCAATAATGCTGCCCAGAAAAGGAATAGCCATCATCGCACACAACCTGGACAATACTGTATGTGCGCACAGGATGCAAGGGTCGATTAACAAATTCGATTGAAATAAGCAAATATCCTACAAAGAAAGAAAAAGCAAGTCAAATCCTCCTGCCAATTAAGAGTACACCTATTTTCAAAT-AGAACAGA-CTTTTTCAGTCCGTGACCCCTGCCACTTTTGTGA-ACAGACTGCCAAACGCAATCAAAATAAAAGA-GGGCATGATttcagtgtacgggcacccattggtgttacaattccattagtcatcgttggttgtaactttgaatgcggtttctgtattatcaaaccgtatatatagagttagaattcttttttttaaatttacatctgttctaacattgttttgaatatggaaagactagaagactgtgattagtgaatcggtgacgaaaatggactgatttgtcttcgtaagaaggacagtataggtatcaataatgctgcccagaaaaggaatagccatcatcgcacacaacctggacaatactgtatgtgcgcacaggatgcaagggtcgattaacaaattcgattgaaataagcaaatatcctacaaagaaagaaaaagcaagtcaaatcctcctgccaattaagagtacacctattttcaaatagaacagactttttcagtccgtgacccctgccacttttgtgaacagactgccaaacgcaatcaaaataaaagagggcatgattt
gi|3 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatctcaaagttatcgaaaatacaggtgcaagtgaactgtcgtcgtaaatgtgaacacgcatatagaatgatcatttaaaattctttaaatgtgtcgtaatgtaactgagaataacattttatcaactacataatcataaaacaTACAA--TCGGTTTAGGCG--TTCAATTACACCACCATTTTTG-C-TTCAAATTTTTTGATCGACACATTGTA--------CAGTTG---GGATTTTG----CCT--CTTC-TTACGCAGAGGTGC-------------AATCCAG-TG--CAACTGTA---ACCCAAGGA-ACAAAT-ATT--C------------TTTG-----GATTCACACCCCGG-GCGATT--TACAATTTGTTGCGGGCAATGTGG--CACAAtt
gi|4 : AAGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCAAATGATCATTTAAAATTCCTGAAAGGTGTCGTAATGTAACTGAGAATG--ACATT---GTATC---AACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATT------G--TTCAGTGTATGGTCAGCCATTCGTATTACAATTCCATTAGTCATGGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGATTTCTGTAAAATTAAGCCTGTA-ATATAGTGTAAGAATTTTTCTTTCATTT--CATTTACATCAGTTCTAACATTGTTTTGAATATGGAAAG---------CTTTG-----TGAATCGGTGACGAGAAAGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATGACACTGCTGGGAAAAAGGATACTCGTCTTCGCACACATCCTGGATAATACTGAATGTGCATACAGAAAACAGGCGTAGATTTACAAATTGGATTGAAATAACCAAATACCCTAGAGATAAAGAACAAGCAAGTAAAA-CATCCTGCC----AAGAGTACACCTATTCTCAGATCAAAATAGA--TTTTTCATTTCGTGACCACAGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGA-GGGCATGATGTA--TAT---CTTGCGC-GAACC-----AATGATTT-CCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAA-GACGtgttcgacttttggatggaactctcaatacatttcatgcagggtattattgcgggtctgacaccagcattcgatccaatcagcaaagtttatcgagcgacagtatctaagacgagttggtttggctgggaagattacaaggttgcgtcatcagcaaactctgatatagaaaactctgaaatacaaagaaatcaaaggaactaaaggttatggacaataatggaaatgtgtacctggcttctcaacgtaatctgaaccttaagatcaccaatgcccatgtggtcaggattgatgcaggtatgcatccaaaaggggagtgtatccaggaattcatcaattcaccttcttttcccaatgattgccttgatcctggtggacctaacctgcatcttttccaccctaagcactttgtcaatgggaattgctgaaccgctatgaacaaaggcagtggtaactattcgatcaaccttatatttggaaggcgtgaaaaattatttccatggatcaaagtactaagtccgattcgacgatagtgttgggcttggtggatttccaacactattatgagcttcttggaagcattgggcaatttaatgcgtgggagctaatggttttgcaagatcggtattggaaacagtgtatgcaagtcagctgtcaatcatcattatgctggtgtgaaaggctgttgaaagagccattacgaggtcatt
gi|5 : gcatttgaatcgatgtaaaccaatttttaaacagacgcaacactcctcaCTACTAAAACAAAGACGCCATGGGCAGATCAAAATTTATGATACTAT-GAAGCTGTAAATTGTTTTCCATGCTGCTGA-GCCATCTATCA-ATCAAACCTGTAATGTAAATTTTC-GCACAGGCAAACACACACCTAAAAAATATCTC--CCTCCTC---CGCAAA---CCAGAGAGT--TAGACCTG----TTGAC-----CTTTACTGACGCTTTTCTTAAAGTGGTGAACTTTCTGCAGGAG---AATAACAAACAACATCAACTGTCAGATCTTTGTTGCTTAACCAAATGAAGGGCGTACTGTG-TGATA----CATG-----------ATATG---------TCA-----T-TGAGCATTTTGGGGATGAAATTA-CATGACAGAAGG-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGC
gi|5 : CTGCTCAAGCTAAAATATAAATGCTGACATTCGTG-CCTTCT---TAGCTCTATAC--TGAATATTGTACCCTTTCTTGTTGTCAAATATGTGAAC--CCTATCTTCAACGCATAGTGCAATC----TAC---AATA-------CGTCGCATGA--CGTC----TCTCGCAAT-----CCTTTT-AAAGCTTCTTACA-TCGTCGATCTACTATAAAGGAACCCAG-GACT-AAGATTGGC----AT---CGACTTTGGACAcaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctctgctcaagctaaaatataaatgctgacattcgtgccttcttagctctatactgaatattgtaccctttcttgttgtcaaatatgtgaaccctatcttcaacgcatagtgcaatctacaatacgtcgcatgacgtctctcgcaatccttttaaagcttcttacatcgtcgatctactataaaggaacccaggactaagattggcatcgactttggacata
gi|6 : ctactaaaacaaagacgccatgggcagatcaaaatttatgatactatgaagctgtaaattgttttccatgctgctgagccatctatcaatcaaacctgtaatgtaaattttcgcacaggcaaacacacacctaaaaaatatctccctcctccgcaaaccagagagttagacctgttgacctttactgacgcttttcttaaagtggtgaactttctgcaggagaataacaaacaacatcaactgtcagatctttgttgcttaaccaaatgaagggcgtactgtgtgatacatgatatgtcattgagcattttggggatgaaattacatgacagaaggcaaagaaaatcaactgtaataacagtacgaaaaacagccaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctCAGCAAGGCTCAAGCTTTTC-A-ACGGCTCTACATCC-------GGCCCAAAACGGTGGACTAGACAT-CGAAGGTCTCCGGAAACACATGCATTACCT--TAGCCTGC-GCT-AAGCTGA--TCTGAAT-TGGACATTC-TGTCTCTTT---ta
gi|6 : TAT-TGAGTGTC--A-CTTGAATG-A-AT---TATCGATATTCTGGAGTGACAAAGGCGTCCCTGAAAAGGTTGTTGTT---CAAAAGGCGTCTTTCCAAATTTTTCTACAATTAAAGA--------AAAGGAACCTGGAGACTGAAAAT-GGCTCTGATTGCCGAC-T-GGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATAGGTATAGGGGGCTGCAGCTCCATCACCA-TTGTGTCATTCAAAGTTTCTTATAAATACG-TGCAG-TTCCGGC--TTA---GGA---TGG-A-CCTTGCATA-TC-C------TTCC-----G-TTTT--gttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattacctattgagtgtcacttgaatgaattatcgatattctggagtgacaaaggcgtccctgaaaaggttgttgttcaaaaggcgtctttccaaatttttctacaattaaagaaaaggaacctggagactgaaaatggctctgattgccgactggacagcaattgtcttagggctgaacgaaagcacgttgcgacctatctacaacataggtatagggggctgcagctccatcaccattgtgtcattcaaagtttcttataaatacgtgcagttccggcttaggatggaccttgcatatccttccgttttnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|7 : cagcaaggctcaagcttttcaacggctctacatccggcccaaaacggtggactagacatcgaaggtctccggaaacacatgcattaccttagcctgcgctaagctgatctgaattggacattctgtctctttgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattaccATA-GCTGCACATTC---C--ATAAAGGAATTTTAGTATCCTA-CATACTT-CGG-AGCCTGCAAAACG-TTTTGAAATCAAGATAAACAGCCATTCTCTCACAAGGACAAAGACAATTA-C--AGAAGACTATTTTGACCCAAA---A-AT---GGCGCAATTCCTTCAATTCGTTGCCGACAACGTAGATCACAAnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|8 : CTGATGCCATCTAT-C-ATCACACTTGTGATGTAGATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCCTCCTAGAtgtgcgctcaaactgcatgggtatggtaacatcaattccatccaggtaagggcataattgttgctcacaccttggtacaaaggaatagcaaacggttatcctaaacctttgaatgtttcattcagctgacctggtcactggctgggaaattgataccccatcttaatattctaataaaacaaacccccagaaaccacactaaaattcgtcatcatgcagaatgcgaaatgtctccacaagcaatatagaataggaacagaaataaaacggatgggattccatcttaagtctactacaattaatatttctttcaaagcgattgtatggctcttcgataacttctactccaagttggtcaggactgactgacaggag
gi|8 : GATATTACTGATGTTTTCCTTGAAGTGGTGAACTATCTGCAGGAGGAGGATGGCAAACAACATCAACTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGCTGATG----CATACTCGCCTTTTTACGTGAAAAAGAAATTACTGTATATGAGCATGTTGGAGATGAAATCATCATTACAGAAAATCAAAGAAAA-------------CAATACAAAAAACAGCAAGA-TCGA---TTTT-C-AAGGCTT------CTACAATCGGCCCAAAACGGTGGATCAGACATTGAAGAAGCTC----AACAT---CATTACTTAGTA--CTGCTGCT-AAGCTGA--TA-AAAT-CGGA------------------TAACTTT-TAATTTGTA-AATGTACTC---CTTGTCGTTAGATAT-TGAGT--C--A-CTTGAA---A-GG---AATC----TTC---AGTA-------CGTACCCGAA--GGCC----TT---AAAA-----CCTTTTCAAAtattactgatgttttccttgaagtggtgaactatctgcaggaggaggatggcaaacaacatcaactgtcagatatcgttgctataataaagggccactatgctgatgcatactcgcctttttacgtgaaaaagaaattactgtatatgagcatgttggagatgaaatcatcattacagaaaatcaaagaaaacaatacaaaaaacagcaagatcgattttcaaggcttctacaatcggcccaaaacggtggatcagacattgaagaagctcaacatcattacttagtactgctgctaagctgataaaatcggataacttttaatttgtaaatgtactccttgtcgttagatattgagtcacttgaaaggaatcttcagtacgtacccgaaggccttaaaaccttttcaaaa
gi|9 : ctgatgccatctatcatcacacttgtgatgtagattttcgaacgggctaacacacacctaaaatattctcaccctcctaGCCATT---TCACAAGGA-ATGAAC-TTTTCC--GG-------CTATG-----AA---A-AT----G-GCAATT-CTTCAATTCG-TGTCGACAGTGTGGATTAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATAAAAAATCTAATTTAATCTAATGTGCAGAAATACCCTATTTCTATGAAAGAAAATTGCTCATAGCACCCTTTGCTTTATGTCACTGCTGCGCTATCATAATGTGTCA
Unaligned ( gi|15 ): GGCCTTCACTTACACCATGTCTGTTCAACATAGTTTTTGAAATCAGACACATTGTACAGTCGGCAT
Alignments
lowQualScore : 11 55555555555 1 55555555555555 444444444 7777777777777 1 11 444444 11 222 2222 22 1 1 11 222 1 33333 1 1 1 1 22 1 111 111 1 1 222 1 2222 111111 222222222 111111111 2222222 1 11111 444444444444444444444444 2222 111 3333 11 22222 22222 1 1 222 1 1111111 4444444444 2222 111 3333333 111 333333333333333333 1 44444444 1 11 333333333 22 1 22222222 11 1 1 222 22 11 1111 44444444444444444 1111 22 1 1 44444444444444444444444 11111 111 1 1 7777777777777777777777777777777777777 1 1
lowQualScore : 1 1 88 66666666666 0 5 33333333333333 111111111 0 3333333333333 1 3 7 88 333333 7 1 88888 88 6 333 0 0 7 8888 1 6 55 0 1 0 88 333 3 33333 3 1 0 0 3 00 1 3 5 3 333 0 0 0 111 1 8 0 1 0 66 8 3 333 3 6 1 8888 7 6 3 0 99 222222 8 8 0 333333333 1 999999999 5555555 1 9 3 0 0 55555 666666666666666666666666 33 1111 777 5555 33 0 8 11111 8 2 9 22 44444 3 7 3 333 1 0 8888888 1111111111 1111 777 2222222 4 444 111111111111111111 2 22 7 3 88888888 7 0 3 6 44 333333333 00 7 5 33333333 88 5 5 1 222 00 1 88 7 7 8888 1 1 2 6 22222222222222222 0 3 9999 33 0 0 11111111111111111111111 88888 2 777 0 22 0 8888888888888888888888888888888888888 0 5 1 3 3
lowQualScore : . . .. ........... . . .............. ......... . ............. . . . .. ...... . . ..... .. . ... . . . .... . . .. . . . .. ... . ..... . . . . . .. . . . . ... . . . ... . . . . . .. . . ... . . . .... . . . . .. ...... . . . ......... . ......... ....... . . . . . ..... ........................ .. .... ... .... .. . . ..... . . . .. ..... . . . ... . . ....... .......... .... ... ....... . ... .................. . .. . . ........ . . . . .. ......... .. . . ........ .. . . . ... .. . .. . . .... . . . . ................. . . .... .. . . ....................... ..... . ... . .. . ..................................... . . . . .
lowQualScore : 0 0 33 00000000000 7 5 00000000000000 000000000 7 3333333333333 0 3 3 33 000000 3 0 00000 33 7 333 7 7 3 3333 0 7 33 0 0 0 33 333 3 33333 3 0 0 0 3 77 0 2 0 2 888 8 8 8 888 0 0 6 0 0 00 8 3 333 3 7 0 3333 3 5 0 2 00 222222 0 6 8 666666666 0 666666666 7777777 7 2 2 8 0 00000 000000000000000000000000 55 2222 555 8888 88 8 0 22222 0 5 2 88 55555 3 3 3 333 0 0 5555555 0000000000 2222 555 5555555 2 000 888888888888888888 5 00 3 3 33333333 3 7 3 7 00 777777777 00 3 5 00000000 00 0 0 0 000 77 0 33 3 3 0000 0 0 5 5 22222222222222222 2 2 5555 88 0 0 55555555555555555555555 77777 0 555 0 22 0 0000000000000000000000000000000000000 0 0 2 2 2
consensus : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATACTCGCCTTTTTACNTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
Reference ( family-4188 ) : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATACTCGCCTTTTTACNTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
gi|1 : CTGAAATTTATCGAAAATACAGTTGCAGGTGAACAGTCATCGTGAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATACCACATTTTTGCACTAATAACTACATAATCATAAAACATTATTTTATAGGATACA-TTAAAAATGTGA--------------TTCTTTTACACTGTACTGCTTATTTTGTTTG--TTCAGTGTATGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTACTATTAAACT-GTTTATATAGTGTTAGCATTTTT--TTC------AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTATGATTAATGAATCGGTGACGAGAATGGAAGTTGGTTTGTCTTCGTGCGAATGACAGTGTAGACCCTGTATCAATAATGCTGCCGAGAAAAGGGATAGCCATCTTCGCATACATCCTGAACAATACTGTATGTGCGCACAGAATACAGGCATCAATTTACAAATTCGATTAAAATAAGCAAATATCCTAGAGAGAAATAAAAAGCATGTCAAATCATCCTGTC----AAGAGTACACCTATTATCAGATCAAAACAGATTTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAAATAAAAGA-GGGCGTGATGTA--TAT---CCTGTGC-GAACC-----AATGATTT-TCAGACTTGTATAAAATCCATCTGTTCTACTAGA-CAA-AACGCT-TGGGTAAACCAAA--TTATGGTAGAATAGAAGCTG-AAAT-A--TTGCATGCTGCTAATGCCATCTAT-A-ATCAAATTTGTGGTGTAAATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCTTGCTCGATCA-TAGGCTCCA-ACAGTGGTAAACCTG----TTTACAGTGATATTACCGATGCTTTTCTTAAAGTGATGAACTATCTGCAGGAGGATGATGATAAACAGCATCAAGTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGTTGATGCATACTTGCCTTTTTACTTCAACAAGAAATTA-----CATGAGCATGTTGGAGATAAAATCTCCATTACAGAAGATCAAAGAAAATCAGCTGTAATAACAATGCAAAAAACAGCAAGG-TCGA---TTTTCC-AAGGCTT------C-------TGCCCAAAACGGTGAACCAGACACTCAAGAAGCTC----AACAT---CATTAC----TA--CTGCTGCT-AAGCTGA--CA-AAAT-CGGACATTCTGTCCCTT-TGTCTAGCTTT-TACTTTGTA-AATGTGCCC---ATTGTCATCACATAT-TGAGT--C--A-CTTGAA---A-AG---AATC----TTC---AGTA-------CGTCCCTGAA--AGTC----TA---CAAA-----CCTTTTCAAAAATTCC--CA-TTAAAGA--------AAAGG-ACCCAG-GGTTGAAGATT-GC----AT---TGA--TTGGACAGACAATT---TT---GCTAATGACGAAA-CACGCT-CCACC-A-CTACAA-ATAGGTCTAGGGG--TGCAGCCCCATCACCATTTG-G-CA-TCAAACTTTCTTATGGATACGCTGCA--TTC---C--TTA---GTATTTTGG-A-CCT--CATA-TT-CGC-GTTTTGC-----GTTTTT--AAGCAAG-TA--CAGTCATT---TCACAATGA-ACAGAC-ATT--CCAGG-------CTTTA-----AA---A-AA---GG-ACAATTCCTCGAATTCGTCGCCGACAATGTGGATCACAA
gi|10 : cCTACTAGA-CAA-GACGCT-TGGGCAGACTAGA-TTTATGCTAGAATAGAAG-TGTAAAT-GATTTGCATGCTGCTGATGTCATCCAT-A-ATCAAAATTGTAGTGTAAATTTTC-GCACAGGCAAACACACACCTAAAATAT-TATCTCCCTCCTCGACCG-AAA---CCA-AGGGTGGTATACCTAATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGAATGATTACAAACAACATCAAATGGCAGAT-GTCATTGCT--AT--GATAAAGAGC-CACTGTGTTGATGCATACCCTCCTTTTTACTTGAAAAAGAAAATA-----TATGAGAATTTTGGGGATGAAATCATCATGACAGAA
gi|11 : tgAACTGTCAGAT-CTGGTTGCT--AA--AATGAAGGGC-TACTGTGGTGATGAA-A---------TCATATG---------TTA-----T-TGAGCATTTTGGGGATGAAATTATCATGACAGAAGAGCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TC-----TTTTAT-ACGA--T------C-------GGCCCAAAACGGTGGACCAGACTTTTGAGAAGCTC----AATAT---TATTAC----TA--CTGCTGCT-AAGCTGA--TA-AAAT-
gi|13 : tnaTTTGTGGTACAGACTGCAAATCTCAATTAAATTAAAAGAGGGGCATGATGTAATTATATGCCTGCGCAAAACCTAATGAATGATTCACCAGAn
gi|14 : atcgcaacaaAGAAG-TATTAAT-GATTTGCATGCAGCCGATGCT-TCT-T-ACATCAAAACTGTAGCGTCAATTTTTAGAACAG
gi|16 : ttgTTA-----T-TGAGCATTTTGGGGATGAAATTATCATG
gi|17 : gtgatanatcatatgGN---TTTT-ATACGA--T------C-------GGCCCAAAACGGTGGACCAGAC
gi|2 : tttaaaCTCAAAGTTATCGAAAATACAGGTGCAAGTGAACTGTCGTCGTAAATGTGAACACGCATATAGAATGATCATTTAAAATTCTTTAAATGTGTCGTAATGTAACTGAGAATA--ACATTTT-AT-----CAACTACATAATCATAAAACATTATTTTATAGAttna
gi|2 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatTTATTTTAT--AGATTCAGTGTACGGGCACCCATTGGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTATTATCAAACC-GTATATATAGAGTTAGAATTCTT--TTT--TTTAAATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTGTGATTAGTGAATCGGTGACGAAAATGGA--CTGATTTGTCTTCGTAAGAAGGACAGT--ATAG---GTATCAATAATGCTGCCCAGAAAAGGAATAGCCATCATCGCACACAACCTGGACAATACTGTATGTGCGCACAGGATGCAAGGGTCGATTAACAAATTCGATTGAAATAAGCAAATATCCTACAAAGAAAGAAAAAGCAAGTCAAATCCTCCTGCCAATTAAGAGTACACCTATTTTCAAAT-AGAACAGA-CTTTTTCAGTCCGTGACCCCTGCCACTTTTGTGA-ACAGACTGCCAAACGCAATCAAAATAAAAGA-GGGCATGATttcagtgtacgggcacccattggtgttacaattccattagtcatcgttggttgtaactttgaatgcggtttctgtattatcaaaccgtatatatagagttagaattcttttttttaaatttacatctgttctaacattgttttgaatatggaaagactagaagactgtgattagtgaatcggtgacgaaaatggactgatttgtcttcgtaagaaggacagtataggtatcaataatgctgcccagaaaaggaatagccatcatcgcacacaacctggacaatactgtatgtgcgcacaggatgcaagggtcgattaacaaattcgattgaaataagcaaatatcctacaaagaaagaaaaagcaagtcaaatcctcctgccaattaagagtacacctattttcaaatagaacagactttttcagtccgtgacccctgccacttttgtgaacagactgccaaacgcaatcaaaataaaagagggcatgattt
gi|3 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatctcaaagttatcgaaaatacaggtgcaagtgaactgtcgtcgtaaatgtgaacacgcatatagaatgatcatttaaaattctttaaatgtgtcgtaatgtaactgagaataacattttatcaactacataatcataaaacaTACAA--TCGGTTTAGGCG--TTCAATTACACCACCATTTTTG-C-TTCAAATTTTTTGATCGACACATTGTA--------CAGTTG---GGATTTTG----CCT--CTTC-TTACGCAGAGGTGC-------------AATCCAG-TG--CAACTGTA---ACCCAAGGA-ACAAAT-ATT--C------------TTTG-----GATTCACACCCCGG-GCGATT--TACAATTTGTTGCGGGCAATGTGG--CACAAtt
gi|4 : AAGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCAAATGATCATTTAAAATTCCTGAAAGGTGTCGTAATGTAACTGAGAATG--ACATT---GTATC---AACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATT------G--TTCAGTGTATGGTCAGCCATTCGTATTACAATTCCATTAGTCATGGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGATTTCTGTAAAATTAAGCCTGTA-ATATAGTGTAAGAATTTTTCTTTCATTT--CATTTACATCAGTTCTAACATTGTTTTGAATATGGAAAG---------CTTTG-----TGAATCGGTGACGAGAAAGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATGACACTGCTGGGAAAAAGGATACTCGTCTTCGCACACATCCTGGATAATACTGAATGTGCATACAGAAAACAGGCGTAGATTTACAAATTGGATTGAAATAACCAAATACCCTAGAGATAAAGAACAAGCAAGTAAAA-CATCCTGCC----AAGAGTACACCTATTCTCAGATCAAAATAGA--TTTTTCATTTCGTGACCACAGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGA-GGGCATGATGTA--TAT---CTTGCGC-GAACC-----AATGATTT-CCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAA-GACGtgttcgacttttggatggaactctcaatacatttcatgcagggtattattgcgggtctgacaccagcattcgatccaatcagcaaagtttatcgagcgacagtatctaagacgagttggtttggctgggaagattacaaggttgcgtcatcagcaaactctgatatagaaaactctgaaatacaaagaaatcaaaggaactaaaggttatggacaataatggaaatgtgtacctggcttctcaacgtaatctgaaccttaagatcaccaatgcccatgtggtcaggattgatgcaggtatgcatccaaaaggggagtgtatccaggaattcatcaattcaccttcttttcccaatgattgccttgatcctggtggacctaacctgcatcttttccaccctaagcactttgtcaatgggaattgctgaaccgctatgaacaaaggcagtggtaactattcgatcaaccttatatttggaaggcgtgaaaaattatttccatggatcaaagtactaagtccgattcgacgatagtgttgggcttggtggatttccaacactattatgagcttcttggaagcattgggcaatttaatgcgtgggagctaatggttttgcaagatcggtattggaaacagtgtatgcaagtcagctgtcaatcatcattatgctggtgtgaaaggctgttgaaagagccattacgaggtcatt
gi|5 : gcatttgaatcgatgtaaaccaatttttaaacagacgcaacactcctcaCTACTAAAACAAAGACGCCATGGGCAGATCAAAATTTATGATACTAT-GAAGCTGTAAATTGTTTTCCATGCTGCTGA-GCCATCTATCA-ATCAAACCTGTAATGTAAATTTTC-GCACAGGCAAACACACACCTAAAAAATATCT--CCCTCCT---CCGCAAA---CCAGAGAGT--TAGACCTG----TTGAC-----CTTTACTGACGCTTTTCTTAAAGTGGTGAACTTTCTGCAGGAG---AATAACAAACAACATCAACTGTCAGATCTTTGTTGCTTAACCAAATGAAGGGCGTACTGTG-TGATACATG-----------ATATG---------TCA-----T-TGAGCATTTTGGGGATGAAATTA-CATGACAGAAGG-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGC
gi|5 : CTGCTCAAGCTAAAATATAAATGCTGACATTC-GTGCCTTCT---TAGCTCTATAC--TGAATATTGTACCCTTTCTTGTTGTCAAATATGTGAAC--CCTATCTTCAACGCATAGTGCAATC----TAC---AATA-------CGTCGCATGA--CGTC----TCTCGCAAT-----CCTTTT-AAAGCTTCTTACA-TCGTCGATCTACTATAAAGGAACCCAG-GACT-AAGATTGGC----AT---CGACTTTGGACAcaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctctgctcaagctaaaatataaatgctgacattcgtgccttcttagctctatactgaatattgtaccctttcttgttgtcaaatatgtgaaccctatcttcaacgcatagtgcaatctacaatacgtcgcatgacgtctctcgcaatccttttaaagcttcttacatcgtcgatctactataaaggaacccaggactaagattggcatcgactttggacata
gi|6 : ctactaaaacaaagacgccatgggcagatcaaaatttatgatactatgaagctgtaaattgttttccatgctgctgagccatctatcaatcaaacctgtaatgtaaattttcgcacaggcaaacacacacctaaaaaatatctccctcctccgcaaaccagagagttagacctgttgacctttactgacgcttttcttaaagtggtgaactttctgcaggagaataacaaacaacatcaactgtcagatctttgttgcttaaccaaatgaagggcgtactgtgtgatacatgatatgtcattgagcattttggggatgaaattacatgacagaaggcaaagaaaatcaactgtaataacagtacgaaaaacagccaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctCAGCAAGGCTCAAGCTTTTC-A-ACGGCTCTACATCC-------GGCCCAAAACGGTGGACTAGACAT-CGAAGGTCTCCGGAAACACATGCATTACCT--TAGCCTGC-GCT-AAGCTGA--TCTGAAT-TGGACATTCTGTCTCTT-T---ta
gi|6 : TAT-TGAGTGTC--A-CTTGAATG-A-AT---TATCGATATTCTGGAGTGACAAAGGCGTCCCTGAAAAGGTTGTTGTT---CAAAAGGCGTCTTTCCAAATTTTTCTACAATTAAAGA--------AAAGGAACCTGGAGACTGAAAAT-GGCTCTGATTGCCGAC-T-GGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATAGGTATAGGGGGCTGCAGCTCCATCACCA-TTGTGTCATTCAAAGTTTCTTATAAATACG-TGCAG-TTCCGGC--TTA---GGA---TGG-A-CCTTGCATA-TC-C------TTCC-----G-TTTT--gttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattacctattgagtgtcacttgaatgaattatcgatattctggagtgacaaaggcgtccctgaaaaggttgttgttcaaaaggcgtctttccaaatttttctacaattaaagaaaaggaacctggagactgaaaatggctctgattgccgactggacagcaattgtcttagggctgaacgaaagcacgttgcgacctatctacaacataggtatagggggctgcagctccatcaccattgtgtcattcaaagtttcttataaatacgtgcagttccggcttaggatggaccttgcatatccttccgttttnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|7 : cagcaaggctcaagcttttcaacggctctacatccggcccaaaacggtggactagacatcgaaggtctccggaaacacatgcattaccttagcctgcgctaagctgatctgaattggacattctgtctctttgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattaccATA-GCTGCACATTC---C--ATAAAGGAATTTTAGTATCCTA-CATACTT-CGG-AGCCTGCAAAACG-TTTTGAAATCAAGATAAACAGCCATTCTCTCACAAGGACAAAGACAATTA-C--AGAAGACTATTTTGACCCAAA---A-AT---GGCGCAATTCCTTCAATTCGTTGCCGACAACGTAGATCACAAnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|8 : CTGATGCCATCTAT-C-ATCACACTTGTGATGTAGATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCCTCCTAGAtgtgcgctcaaactgcatgggtatggtaacatcaattccatccaggtaagggcataattgttgctcacaccttggtacaaaggaatagcaaacggttatcctaaacctttgaatgtttcattcagctgacctggtcactggctgggaaattgataccccatcttaatattctaataaaacaaacccccagaaaccacactaaaattcgtcatcatgcagaatgcgaaatgtctccacaagcaatatagaataggaacagaaataaaacggatgggattccatcttaagtctactacaattaatatttctttcaaagcgattgtatggctcttcgataacttctactccaagttggtcaggactgactgacaggag
gi|8 : GATATTACTGATGTTTTCCTTGAAGTGGTGAACTATCTGCAGGAGGAGGATGGCAAACAACATCAACTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGCTGATGCATACTCGCCTTTTTACGTGAAAAAGAAATTACTGTATATGAGCATGTTGGAGATGAAATCATCATTACAGAAAATCAAAGAAAA-------------CAATACAAAAAACAGCAAGA-TCGA---TTTT-C-AAGGCTT------CTACAATCGGCCCAAAACGGTGGATCAGACATTGAAGAAGCTC----AACAT---CATTACTTAGTA--CTGCTGCT-AAGCTGA--TA-AAAT-CGGA------------------TAACTTT-TAATTTGTA-AATGTACTC---CTTGTCGTTAGATAT-TGAGT--C--A-CTTGAA---A-GG---AATC----TTC---AGTA-------CGTACCCGAA--GGCC----TT---AAAA-----CCTTTTCAAAtattactgatgttttccttgaagtggtgaactatctgcaggaggaggatggcaaacaacatcaactgtcagatatcgttgctataataaagggccactatgctgatgcatactcgcctttttacgtgaaaaagaaattactgtatatgagcatgttggagatgaaatcatcattacagaaaatcaaagaaaacaatacaaaaaacagcaagatcgattttcaaggcttctacaatcggcccaaaacggtggatcagacattgaagaagctcaacatcattacttagtactgctgctaagctgataaaatcggataacttttaatttgtaaatgtactccttgtcgttagatattgagtcacttgaaaggaatcttcagtacgtacccgaaggccttaaaaccttttcaaaa
gi|9 : ctgatgccatctatcatcacacttgtgatgtagattttcgaacgggctaacacacacctaaaatattctcaccctcctaGCCATT---TCACAAGGA-ATGAAC-TTTTCC--GG-------CTATG-----AA---A-AT----G-GCAATT-CTTCAATTCG-TGTCGACAGTGTGGATTAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATAAAAAATCTAATTTAATCTAATGTGCAGAAATACCCTATTTCTATGAAAGAAAATTGCTCATAGCACCCTTTGCTTTATGTCACTGCTGCGCTATCATAATGTGTCA
Unaligned ( gi|15 ): GGCCTTCACTTACACCATGTCTGTTCAACATAGTTTTTGAAATCAGACACATTGTACAGTCGGCAT
Alignments
lowQualScore : 11 55555555555 1 55555555555555 444444444 7777777777777 1 11 444444 11 222 2222 22 1 1 11 222 1 33333 1 1 1 1 22 1 111 111 1 1 222 1 2222 111111 222222222 111111111 2222222 1 11111 444444444444444444444444 2222 111 3333 11 22222 22222 1 1 222 1 1111111 4444444444 2222 111 3333333 111 333333333333333333 1 44444444 1 11 333333333 22 1 22222222 11 1 1 222 22 11 1111 44444444444444444 1111 22 1 1 44444444444444444444444 11111 111 1 1 7777777777777777777777777777777777777 1 1
lowQualScore : 1 1 88 66666666666 0 5 33333333333333 111111111 0 3333333333333 1 3 7 88 333333 7 1 88888 88 6 333 0 0 7 8888 1 6 55 0 1 0 88 333 3 33333 3 1 0 0 3 00 1 3 5 3 333 0 0 0 111 1 8 0 1 0 66 8 3 333 3 6 1 8888 7 6 3 0 99 222222 8 8 0 333333333 1 999999999 5555555 1 9 3 0 0 55555 666666666666666666666666 33 1111 777 5555 33 0 8 11111 8 2 9 22 44444 3 7 3 333 1 0 8888888 1111111111 1111 777 2222222 4 444 111111111111111111 2 22 7 3 88888888 7 0 3 6 44 333333333 00 7 5 33333333 88 5 5 1 222 00 1 88 7 7 8888 1 1 2 6 22222222222222222 0 3 9999 33 0 0 11111111111111111111111 88888 2 777 0 22 0 8888888888888888888888888888888888888 0 5 1 3 3
lowQualScore : . . .. ........... . . .............. ......... . ............. . . . .. ...... . . ..... .. . ... . . . .... . . .. . . . .. ... . ..... . . . . . .. . . . . ... . . . ... . . . . . .. . . ... . . . .... . . . . .. ...... . . . ......... . ......... ....... . . . . . ..... ........................ .. .... ... .... .. . . ..... . . . .. ..... . . . ... . . ....... .......... .... ... ....... . ... .................. . .. . . ........ . . . . .. ......... .. . . ........ .. . . . ... .. . .. . . .... . . . . ................. . . .... .. . . ....................... ..... . ... . .. . ..................................... . . . . .
lowQualScore : 0 0 33 00000000000 7 5 00000000000000 000000000 7 3333333333333 0 3 3 33 000000 3 0 00000 33 7 333 7 7 3 3333 0 7 33 0 0 0 33 333 3 33333 3 0 0 0 3 77 0 2 0 2 888 8 8 8 888 0 0 6 0 0 00 8 3 333 3 7 0 3333 3 5 0 2 00 222222 0 6 8 666666666 0 666666666 7777777 7 2 2 8 0 00000 000000000000000000000000 55 2222 555 8888 88 8 0 22222 0 5 2 88 55555 3 3 3 333 0 0 5555555 0000000000 2222 555 5555555 2 000 888888888888888888 5 00 3 3 33333333 3 7 3 7 00 777777777 00 3 5 00000000 00 0 0 0 000 77 0 33 3 3 0000 0 0 5 5 22222222222222222 2 2 5555 88 0 0 55555555555555555555555 77777 0 555 0 22 0 0000000000000000000000000000000000000 0 0 2 2 2
consensus : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATACTCGCCTTTTTACNTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
Reference ( family-4188 ) : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATACTCGCCTTTTTACNTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
gi|1 : CTGAAATTTATCGAAAATACAGTTGCAGGTGAACAGTCATCGTGAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATACCACATTTTTGCACTAATAACTACATAATCATAAAACATTATTTTATAGGATACA-TTAAAAATGTGA--------------TTCTTTTACACTGTACTGCTTATTTTGTTTG--TTCAGTGTATGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTACTATTAAACT-GTTTATATAGTGTTAGCATTTTT--TTC------AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTATGATTAATGAATCGGTGACGAGAATGGAAGTTGGTTTGTCTTCGTGCGAATGACAGTGTAGACCCTGTATCAATAATGCTGCCGAGAAAAGGGATAGCCATCTTCGCATACATCCTGAACAATACTGTATGTGCGCACAGAATACAGGCATCAATTTACAAATTCGATTAAAATAAGCAAATATCCTAGAGAGAAATAAAAAGCATGTCAAATCATCCTGTC----AAGAGTACACCTATTATCAGATCAAAACAGATTTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAAATAAAAGA-GGGCGTGATGTA--TAT---CCTGTGC-GAACC-----AATGATTT-TCAGACTTGTATAAAATCCATCTGTTCTACTAGA-CAA-AACGCT-TGGGTAAACCAAA--TTATGGTAGAATAGAAGCTG-AAAT-A--TTGCATGCTGCTAATGCCATCTAT-A-ATCAAATTTGTGGTGTAAATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCTTGCTCGATCA-TAGGCTCCA-ACAGTGGTAAACCTG----TTTACAGTGATATTACCGATGCTTTTCTTAAAGTGATGAACTATCTGCAGGAGGATGATGATAAACAGCATCAAGTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGTTGATGCATACTTGCCTTTTTACTTCAACAAGAAATTA-----CATGAGCATGTTGGAGATAAAATCTCCATTACAGAAGATCAAAGAAAATCAGCTGTAATAACAATGCAAAAAACAGCAAGG-TCGA---TTTTCC-AAGGCTT------C-------TGCCCAAAACGGTGAACCAGACACTCAAGAAGCTC----AACAT---CATTAC----TA--CTGCTGCT-AAGCTGA--CA-AAAT-CGGACATTCTGTCCCTT-TGTCTAGCTTT-TACTTTGTA-AATGTGCCC---ATTGTCATCACATAT-TGAGT--C--A-CTTGAA---A-AG---AATC----TTC---AGTA-------CGTCCCTGAA--AGTC----TA---CAAA-----CCTTTTCAAAAATTCC--CA-TTAAAGA--------AAAGG-ACCCAG-GGTTGAAGATT-GC----AT---TGA--TTGGACAGACAATT---TT---GCTAATGACGAAA-CACGCT-CCACC-A-CTACAA-ATAGGTCTAGGGG--TGCAGCCCCATCACCATTTG-G-CA-TCAAACTTTCTTATGGATACGCTGCA--TTC---C--TTA---GTATTTTGG-A-CCT--CATA-TT-CGC-GTTTTGC-----GTTTTT--AAGCAAG-TA--CAGTCATT---TCACAATGA-ACAGAC-ATT--CCAGG-------CTTTA-----AA---A-AA---GG-ACAATTCCTCGAATTCGTCGCCGACAATGTGGATCACAA
gi|10 : cCTACTAGA-CAA-GACGCT-TGGGCAGACTAGA-TTTATGCTAGAATAGAAG-TGTAAAT-GATTTGCATGCTGCTGATGTCATCCAT-A-ATCAAAATTGTAGTGTAAATTTTC-GCACAGGCAAACACACACCTAAAATAT-TATCTCCCTCCTCGACCG-AAA---CCA-AGGGTGGTATACCTAATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGAATGATTACAAACAACATCAAATGGCAGAT-GTCATTGCT--AT--GATAAAGAGC-CACTGTGTTGATGCATACCCTCCTTTTTACTTGAAAAAGAAAATA-----TATGAGAATTTTGGGGATGAAATCATCATGACAGAA
gi|11 : tgAACTGTCAGAT-CTGGTTGCT--AA--AATGAAGGGC-TACTGTGGTGATGAA-A---------TCATATG---------TTA-----T-TGAGCATTTTGGGGATGAAATTATCATGACAGAAGAGCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TC-----TTTTAT-ACGA--T------C-------GGCCCAAAACGGTGGACCAGACTTTTGAGAAGCTC----AATAT---TATTAC----TA--CTGCTGCT-AAGCTGA--TA-AAAT-
gi|13 : tnaTTTGTGGTACAGACTGCAAATCTCAATTAAATTAAAAGAGGGGCATGATGTAATTATATGCCTGCGCAAAACCTAATGAATGATTCACCAGAn
gi|14 : atcgcaacaaAGAAG-TATTAAT-GATTTGCATGCAGCCGATGCT-TCT-T-ACATCAAAACTGTAGCGTCAATTTTTAGAACAG
gi|16 : ttgTTA-----T-TGAGCATTTTGGGGATGAAATTATCATG
gi|17 : gtgatanatcatatgGN---TTTT-ATACGA--T------C-------GGCCCAAAACGGTGGACCAGAC
gi|2 : tttaaaCTCAAAGTTATCGAAAATACAGGTGCAAGTGAACTGTCGTCGTAAATGTGAACACGCATATAGAATGATCATTTAAAATTCTTTAAATGTGTCGTAATGTAACTGAGAATA--ACATTTT-AT-----CAACTACATAATCATAAAACATTATTTTATAGAttna
gi|2 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatTTATTTTAT--AGATTCAGTGTACGGGCACCCATTGGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTATTATCAAACC-GTATATATAGAGTTAGAATTCTT--TTT--TTTAAATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTGTGATTAGTGAATCGGTGACGAAAATGGA--CTGATTTGTCTTCGTAAGAAGGACAGT--ATAG---GTATCAATAATGCTGCCCAGAAAAGGAATAGCCATCATCGCACACAACCTGGACAATACTGTATGTGCGCACAGGATGCAAGGGTCGATTAACAAATTCGATTGAAATAAGCAAATATCCTACAAAGAAAGAAAAAGCAAGTCAAATCCTCCTGCCAATTAAGAGTACACCTATTTTCAAAT-AGAACAGA-CTTTTTCAGTCCGTGACCCCTGCCACTTTTGTGA-ACAGACTGCCAAACGCAATCAAAATAAAAGA-GGGCATGATttcagtgtacgggcacccattggtgttacaattccattagtcatcgttggttgtaactttgaatgcggtttctgtattatcaaaccgtatatatagagttagaattcttttttttaaatttacatctgttctaacattgttttgaatatggaaagactagaagactgtgattagtgaatcggtgacgaaaatggactgatttgtcttcgtaagaaggacagtataggtatcaataatgctgcccagaaaaggaatagccatcatcgcacacaacctggacaatactgtatgtgcgcacaggatgcaagggtcgattaacaaattcgattgaaataagcaaatatcctacaaagaaagaaaaagcaagtcaaatcctcctgccaattaagagtacacctattttcaaatagaacagactttttcagtccgtgacccctgccacttttgtgaacagactgccaaacgcaatcaaaataaaagagggcatgattt
gi|3 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatctcaaagttatcgaaaatacaggtgcaagtgaactgtcgtcgtaaatgtgaacacgcatatagaatgatcatttaaaattctttaaatgtgtcgtaatgtaactgagaataacattttatcaactacataatcataaaacaTACAA--TCGGTTTAGGCG--TTCAATTACACCACCATTTTTG-C-TTCAAATTTTTTGATCGACACATTGTA--------CAGTTG---GGATTTTG----CCT--CTTC-TTACGCAGAGGTGC-------------AATCCAG-TG--CAACTGTA---ACCCAAGGA-ACAAAT-ATT--C------------TTTG-----GATTCACACCCCGG-GCGATT--TACAATTTGTTGCGGGCAATGTGG--CACAAtt
gi|4 : AAGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCAAATGATCATTTAAAATTCCTGAAAGGTGTCGTAATGTAACTGAGAATG--ACATT---GTATC---AACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATT------G--TTCAGTGTATGGTCAGCCATTCGTATTACAATTCCATTAGTCATGGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGATTTCTGTAAAATTAAGCCTGTA-ATATAGTGTAAGAATTTTTCTTTCATTT--CATTTACATCAGTTCTAACATTGTTTTGAATATGGAAAG---------CTTTG-----TGAATCGGTGACGAGAAAGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATGACACTGCTGGGAAAAAGGATACTCGTCTTCGCACACATCCTGGATAATACTGAATGTGCATACAGAAAACAGGCGTAGATTTACAAATTGGATTGAAATAACCAAATACCCTAGAGATAAAGAACAAGCAAGTAAAA-CATCCTGCC----AAGAGTACACCTATTCTCAGATCAAAATAGA--TTTTTCATTTCGTGACCACAGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGA-GGGCATGATGTA--TAT---CTTGCGC-GAACC-----AATGATTT-CCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAA-GACGtgttcgacttttggatggaactctcaatacatttcatgcagggtattattgcgggtctgacaccagcattcgatccaatcagcaaagtttatcgagcgacagtatctaagacgagttggtttggctgggaagattacaaggttgcgtcatcagcaaactctgatatagaaaactctgaaatacaaagaaatcaaaggaactaaaggttatggacaataatggaaatgtgtacctggcttctcaacgtaatctgaaccttaagatcaccaatgcccatgtggtcaggattgatgcaggtatgcatccaaaaggggagtgtatccaggaattcatcaattcaccttcttttcccaatgattgccttgatcctggtggacctaacctgcatcttttccaccctaagcactttgtcaatgggaattgctgaaccgctatgaacaaaggcagtggtaactattcgatcaaccttatatttggaaggcgtgaaaaattatttccatggatcaaagtactaagtccgattcgacgatagtgttgggcttggtggatttccaacactattatgagcttcttggaagcattgggcaatttaatgcgtgggagctaatggttttgcaagatcggtattggaaacagtgtatgcaagtcagctgtcaatcatcattatgctggtgtgaaaggctgttgaaagagccattacgaggtcatt
gi|5 : gcatttgaatcgatgtaaaccaatttttaaacagacgcaacactcctcaCTACTAAAACAAAGACGCCATGGGCAGATCAAAATTTATGATACTAT-GAAGCTGTAAATTGTTTTCCATGCTGCTGA-GCCATCTATCA-ATCAAACCTGTAATGTAAATTTTC-GCACAGGCAAACACACACCTAAAAAATATCT--CCCTCCT---CCGCAAA---CCAGAGAGT--TAGACCTG----TTGAC-----CTTTACTGACGCTTTTCTTAAAGTGGTGAACTTTCTGCAGGAG---AATAACAAACAACATCAACTGTCAGATCTTTGTTGCTTAACCAAATGAAGGGCGTACTGTG-TGATACATG-----------ATATG---------TCA-----T-TGAGCATTTTGGGGATGAAATTA-CATGACAGAAGG-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGC
gi|5 : CTGCTCAAGCTAAAATATAAATGCTGACATTC-GTGCCTTCT---TAGCTCTATAC--TGAATATTGTACCCTTTCTTGTTGTCAAATATGTGAAC--CCTATCTTCAACGCATAGTGCAATC----TAC---AATA-------CGTCGCATGA--CGTC----TCTCGCAAT-----CCTTTT-AAAGCTTCTTACA-TCGTCGATCTACTATAAAGGAACCCAG-GACT-AAGATTGGC----AT---CGACTTTGGACAcaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctctgctcaagctaaaatataaatgctgacattcgtgccttcttagctctatactgaatattgtaccctttcttgttgtcaaatatgtgaaccctatcttcaacgcatagtgcaatctacaatacgtcgcatgacgtctctcgcaatccttttaaagcttcttacatcgtcgatctactataaaggaacccaggactaagattggcatcgactttggacata
gi|6 : ctactaaaacaaagacgccatgggcagatcaaaatttatgatactatgaagctgtaaattgttttccatgctgctgagccatctatcaatcaaacctgtaatgtaaattttcgcacaggcaaacacacacctaaaaaatatctccctcctccgcaaaccagagagttagacctgttgacctttactgacgcttttcttaaagtggtgaactttctgcaggagaataacaaacaacatcaactgtcagatctttgttgcttaaccaaatgaagggcgtactgtgtgatacatgatatgtcattgagcattttggggatgaaattacatgacagaaggcaaagaaaatcaactgtaataacagtacgaaaaacagccaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctCAGCAAGGCTCAAGCTTTTC-A-ACGGCTCTACATCC-------GGCCCAAAACGGTGGACTAGACAT-CGAAGGTCTCCGGAAACACATGCATTACCT--TAGCCTGC-GCT-AAGCTGA--TCTGAAT-TGGACATTCTGTCTCTT-T---ta
gi|6 : TAT-TGAGTGTC--A-CTTGAATG-A-AT---TATCGATATTCTGGAGTGACAAAGGCGTCCCTGAAAAGGTTGTTGTT---CAAAAGGCGTCTTTCCAAATTTTTCTACAATTAAAGA--------AAAGGAACCTGGAGACTGAAAAT-GGCTCTGATTGCCGAC-T-GGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATAGGTATAGGGGGCTGCAGCTCCATCACCA-TTGTGTCATTCAAAGTTTCTTATAAATACG-TGCAG-TTCCGGC--TTA---GGA---TGG-A-CCTTGCATA-TC-C------TTCC-----G-TTTT--gttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattacctattgagtgtcacttgaatgaattatcgatattctggagtgacaaaggcgtccctgaaaaggttgttgttcaaaaggcgtctttccaaatttttctacaattaaagaaaaggaacctggagactgaaaatggctctgattgccgactggacagcaattgtcttagggctgaacgaaagcacgttgcgacctatctacaacataggtatagggggctgcagctccatcaccattgtgtcattcaaagtttcttataaatacgtgcagttccggcttaggatggaccttgcatatccttccgttttnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|7 : cagcaaggctcaagcttttcaacggctctacatccggcccaaaacggtggactagacatcgaaggtctccggaaacacatgcattaccttagcctgcgctaagctgatctgaattggacattctgtctctttgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattaccATA-GCTGCACATTC---C--ATAAAGGAATTTTAGTATCCTA-CATACTT-CGG-AGCCTGCAAAACG-TTTTGAAATCAAGATAAACAGCCATTCTCTCACAAGGACAAAGACAATTA-C--AGAAGACTATTTTGACCCAAA---A-AT---GGCGCAATTCCTTCAATTCGTTGCCGACAACGTAGATCACAAnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|8 : CTGATGCCATCTAT-C-ATCACACTTGTGATGTAGATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCCTCCTAGAtgtgcgctcaaactgcatgggtatggtaacatcaattccatccaggtaagggcataattgttgctcacaccttggtacaaaggaatagcaaacggttatcctaaacctttgaatgtttcattcagctgacctggtcactggctgggaaattgataccccatcttaatattctaataaaacaaacccccagaaaccacactaaaattcgtcatcatgcagaatgcgaaatgtctccacaagcaatatagaataggaacagaaataaaacggatgggattccatcttaagtctactacaattaatatttctttcaaagcgattgtatggctcttcgataacttctactccaagttggtcaggactgactgacaggag
gi|8 : GATATTACTGATGTTTTCCTTGAAGTGGTGAACTATCTGCAGGAGGAGGATGGCAAACAACATCAACTGTCAGAT-ATCGTTGCT--AT--AATAAAGGGC-CACTATGCTGATGCATACTCGCCTTTTTACGTGAAAAAGAAATTACTGTATATGAGCATGTTGGAGATGAAATCATCATTACAGAAAATCAAAGAAAA-------------CAATACAAAAAACAGCAAGA-TCGA---TTTT-C-AAGGCTT------CTACAATCGGCCCAAAACGGTGGATCAGACATTGAAGAAGCTC----AACAT---CATTACTTAGTA--CTGCTGCT-AAGCTGA--TA-AAAT-CGGA------------------TAACTTT-TAATTTGTA-AATGTACTC---CTTGTCGTTAGATAT-TGAGT--C--A-CTTGAA---A-GG---AATC----TTC---AGTA-------CGTACCCGAA--GGCC----TT---AAAA-----CCTTTTCAAAtattactgatgttttccttgaagtggtgaactatctgcaggaggaggatggcaaacaacatcaactgtcagatatcgttgctataataaagggccactatgctgatgcatactcgcctttttacgtgaaaaagaaattactgtatatgagcatgttggagatgaaatcatcattacagaaaatcaaagaaaacaatacaaaaaacagcaagatcgattttcaaggcttctacaatcggcccaaaacggtggatcagacattgaagaagctcaacatcattacttagtactgctgctaagctgataaaatcggataacttttaatttgtaaatgtactccttgtcgttagatattgagtcacttgaaaggaatcttcagtacgtacccgaaggccttaaaaccttttcaaaa
gi|9 : ctgatgccatctatcatcacacttgtgatgtagattttcgaacgggctaacacacacctaaaatattctcaccctcctaGCCATT---TCACAAGGA-ATGAAC-TTTTCC--GG-------CTATG-----AA---A-AT----G-GCAATT-CTTCAATTCG-TGTCGACAGTGTGGATTAa
blockSeqs : C G . TTATC A GGAAGTAAAAATTA TTATAGA CAGTGACGCTACT T T T CT TTTA A G ATTAG . G . T AATT T C C T T G AT ATG A TAATG A A A A A AT C A C T TGT AC A A A A CT C C . G G T ATAA A A T CT TAACCA G T CCCTCCTTT T AAAAAGAAA CTGTATA T G T C AAGCT CAAGGCTTCTACAATC TT CGGA ATG TTAG GC C AATAT G C T GC CT A T T TTT A G CCTAT CGCATAGTGC GATA TGG ACAAAGG A AAG GTTGTTCAAAAGGCG C GC T A TCTACTAT A A G TG TCTGATTGC CT T . GTCTTAGG . G G G TAT CA T GC T T TCAT T C C T CATTCCATAAAG T GTAT TG C A GGAGCCTGCAAAACGTTTTGA ATAAA G CTC C CA A ACAGAAGACTATTTTGACCCAAAAATG C C A T A
blockSeqs : . GTATC G . A . . . ATTT . T . . . . . . C . . . A . . . . . . . . . T A A . T GA CA A . A . CA A . . . . G . . G G G AT . G CTCGCCTTT A AAAAAGAAA TA T T T . GN AACGGCTCTACATCC TG . . CT . . TCT . C . CT T . . . . G . GTCA TGAAT . . . T C TCTCGCAAT C TT T . . A . . G AT C . . A . . T CT G A C C GTTCCGGCTTA T GA A . . GCAGAGGTGC TG A . . AA . CTTTGGATTCACACCCCG . . T T A
blockSeqs : . T . . . . . T GA A C . T . . . . . C AA . C . A . T T . . . GA ATACGATC C . . . . . TA . . . . . . CA AGG . . . C G TTAAAA . . . CAGTTG . . . . . TTCCGTTTT A . . TG . TCCGGCTATGAAAAT . . T . .
blockSeqs : C C . A AT . . . G . T T . ATACGATC . TA .
blockSeqs : T .
blockSeqCons : ********* T****** AGCCTACGATC*************
originalCons : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATACTCGCCTTTTTACNTGAAAAAGAAATTA-----TATGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT-N-ACGGCTT------C-------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
finalCons : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCTG----TTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGAT-NTCGTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATA---------TTACNTGAAAAAGAAATTAT------TGAGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTTAGCCTACGATC-------------GGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATAAAAAATCTAATTTAATCTAATGTGCAGAAATACCCTATTTCTATGAAAGAAAATTGCTCATAGCACCCTTTGCTTTATGTCACTGCTGCGCTATCATAATGTGTCA
Unaligned ( gi|15 ): GGCCTTCACTTACACCATGTCTGTTCAACATAGTTTTTGAAATCAGACACATTGTACAGTCGGCAT
Alignments
lowQualScore : 11 55555555555 1 55555555555555 444444444 7777777777777 1 11 444444 11 222 2222 22 1 1 11 222 1 33333 1 1 1 1 22 1 111 111 1 1 222 1 2222 111111 9999999999 111111111 1 111111 1 11111 6666666666 2222 111 3333 11 22222 22222 1 1 222 1 1111111 4444444444 2222 111 3333333 111 333333333333333333 1 44444444 1 11 333333333 22 1 22222222 11 1 1 222 22 11 1111 44444444444444444 1111 22 1 1 44444444444444444444444 11111 111 1 1 7777777777777777777777777777777777777 1 1
lowQualScore : 1 1 88 66666666666 0 5 33333333333333 111111111 0 3333333333333 1 3 7 88 333333 7 1 88888 88 6 333 0 0 7 8888 1 6 55 0 1 0 88 333 3 33333 3 1 0 0 3 00 1 3 5 3 333 0 0 0 111 1 8 0 1 0 9 2 3 3 333 3 6 1 8888 7 666 1 8 222222 8 0 0 6666666666 1 999999999 3 999999 1 9 3 0 0 55555 8888888888 0 22 33 1111 777 5555 33 0 8 11111 8 2 9 22 44444 3 7 3 333 1 0 8888888 1111111111 1111 777 2222222 4 444 111111111111111111 2 22 7 3 88888888 7 0 3 6 44 333333333 00 7 5 33333333 88 5 5 1 222 00 1 88 7 7 8888 1 1 2 6 22222222222222222 0 3 9999 33 0 0 11111111111111111111111 88888 2 777 0 22 0 8888888888888888888888888888888888888 0 5 1 3 3
lowQualScore : . . .. ........... . . .............. ......... . ............. . . . .. ...... . . ..... .. . ... . . . .... . . .. . . . .. ... . ..... . . . . . .. . . . . ... . . . ... . . . . . . . . . ... . . . .... . ... . . ...... . . . .......... . ......... . ...... . . . . . ..... .......... . .. .. .... ... .... .. . . ..... . . . .. ..... . . . ... . . ....... .......... .... ... ....... . ... .................. . .. . . ........ . . . . .. ......... .. . . ........ .. . . . ... .. . .. . . .... . . . . ................. . . .... .. . . ....................... ..... . ... . .. . ..................................... . . . . .
lowQualScore : 0 0 33 00000000000 7 5 00000000000000 000000000 7 3333333333333 0 3 3 33 000000 3 0 00000 33 7 333 7 7 3 3333 0 7 33 0 0 0 33 333 3 33333 3 0 0 0 3 77 0 2 0 2 888 8 8 8 888 0 0 6 0 0 8 5 7 3 333 3 7 0 3333 3 555 0 0 222222 0 8 8 8888888888 0 666666666 3 222222 7 2 2 8 0 00000 2222222222 8 44 55 2222 555 8888 88 8 0 22222 0 5 2 88 55555 3 3 3 333 0 0 5555555 0000000000 2222 555 5555555 2 000 888888888888888888 5 00 3 3 33333333 3 7 3 7 00 777777777 00 3 5 00000000 00 0 0 0 000 77 0 33 3 3 0000 0 0 5 5 22222222222222222 2 2 5555 88 0 0 55555555555555555555555 77777 0 555 0 22 0 0000000000000000000000000000000000000 0 0 2 2 2
consensus : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCT----GTTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGATNTC-GTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATACTCGCCTTTTTACNTGAAAAAGAAATTAT-TG------AGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTTC-AAGC----CTACGATCGGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
Reference ( family-4188 ) : NCTNAAANTTATCGAAAATACAGGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATA--ACATTTT-GTACC--CAACTACGTAATCATAAAACATTATTTTATAGAATACAATTAAAAATGTGAGGAAGTAAAAATTATTCTTTTACACCGCACTGCTTATTTTGT--G--TTCAGTGTACGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTANTATTAAACC-GTATATATAGTGTTAGAATTTTT--TTC--TT--AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTNTGATTAGTGAATCGGTGACGAGAATGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATAACGCTGCCGAGAAAAGGGATAGCCGTCTTCGCACACATCCTGGACAATACTGTATGTGCGCACAGAATACAGGCGTCGATTTACAAATTCGATTGAAATAAGCAAATATCCTAGAGAGAAAGAAAAAGCAAGTCAAATCATCCTGCC----AAGAGTACACCTATTNTCAGATCAAAACAGA-CTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAANTAAAAGA-GGGCATGATGTA--TAT---CCTGCGC-GAACC-----AATGATTT-CCAGACTNGTATAAAATCCACCTGTTCTACTAGA-CAA-GACGCT-TGGGCAGACCAAA-TTTATGNTAGAATAGAAGCTGTAAAT-GATTTGCATGCTGCTGATGCCATCTAT-A-ATCAAANTTGTAGTGTAAATTTTC-GAACGGGCNAACACACACCTAAAATAT-TCTCACCCTCCTCGACCG-AAA---CCA-AGAGTGGTANACCT----GTTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGGATGATGACAAACAACATCAACTGTCAGATNTC-GTTGCT--AT--AATAAAGGGC-CACTGTGTTGATGCATA---------TTACNTGAAAAAGAAATTAT-TG------AGCATTTTGGGGATGAAATCATCATGACAGAAGATCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGG-TCGA---TTTT---AGC----CTACGATCGGCCCAAAACGGTGGACCAGACATTCGAGAAGCTC----AACAT---CATTACCT--TA--CTGCTGCT-AAGCTGA--TATAAAT-CGGACATTCTGTCCCTT-T---TAGCTTT-TACTTTGTA-AATGTACCC---CTTGTCGTCANATAT-TGAGT--C--A-CTTGAACG-A-AG---AATC----TTC---AGTA-------CGTCCCCGAA--GGTC----TT---CAAA-----CCTTTTCAAANNTTCCTACA-TTAAAGA--------AAAGGAACCCGG-GACTGAAGATTGGC----AT---CGAC-TTGGACAGACAATTGTCTTAGGGCTGATGACGAAAGCACGCTGCNACCTATCTACAA-ATAGGTNTAGGGG--TGCAGCTCCATCACCATTTGTG-CATTCAAANTTTCTTATNGATACGCTGCA--TTC---C--TTA---GGATTTTGG-A-CCT--CATA-TT-CGC-GNNTTGC-----G-TTTT--AATCAAG-TA--CAGCCGTT---TCACAAGGA-ACGGAC-ATT--C--GG-------CTTTG-----AA---A-AT---GG-GCAATTCCTTCAATTCGTTGCCGACAATGTGGATCACAA
gi|1 : CTGAAATTTATCGAAAATACAGTTGCAGGTGAACAGTCATCGTGAATGTGAACACGCATACCGAATGATCATTTAAAATTCTTGAAAGGTGTCGTAATGTAACTGAGAATACCACATTTTTGCACTAATAACTACATAATCATAAAACATTATTTTATAGGATACA-TTAAAAATGTGA--------------TTCTTTTACACTGTACTGCTTATTTTGTTTG--TTCAGTGTATGGGCACCCATTCGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTACTATTAAACT-GTTTATATAGTGTTAGCATTTTT--TTC------AATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTATGATTAATGAATCGGTGACGAGAATGGAAGTTGGTTTGTCTTCGTGCGAATGACAGTGTAGACCCTGTATCAATAATGCTGCCGAGAAAAGGGATAGCCATCTTCGCATACATCCTGAACAATACTGTATGTGCGCACAGAATACAGGCATCAATTTACAAATTCGATTAAAATAAGCAAATATCCTAGAGAGAAATAAAAAGCATGTCAAATCATCCTGTC----AAGAGTACACCTATTATCAGATCAAAACAGATTTTTTTCATTCCGTGACCACTGCCACTTTTGTGG-ACAGACTGCCAAACTCAATCAAAATAAAAGA-GGGCGTGATGTA--TAT---CCTGTGC-GAACC-----AATGATTT-TCAGACTTGTATAAAATCCATCTGTTCTACTAGA-CAA-AACGCT-TGGGTAAACCAAA--TTATGGTAGAATAGAAGCTG-AAAT-A--TTGCATGCTGCTAATGCCATCTAT-A-ATCAAATTTGTGGTGTAAATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCTTGCTCGATCA-TAGGCTCCA-ACAGTGGTAAACCT----GTTTACAGTGATATTACCGATGCTTTTCTTAAAGTGATGAACTATCTGCAGGAGGATGATGATAAACAGCATCAAGTGTCAGATATC-GTTGCT--AT--AATAAAGGGC-CACTATGTTGATGCATACTTGCCTTTTTACTTCAACAAGAAATTACATG------AGCATGTTGGAGATAAAATCTCCATTACAGAAGATCAAAGAAAATCAGCTGTAATAACAATGCAAAAAACAGCAAGG-TCGA---TTTTCCAAGG----CT----TCTGCCCAAAACGGTGAACCAGACACTCAAGAAGCTC----AACAT---CATTAC----TA--CTGCTGCT-AAGCTGA--CA-AAAT-CGGACATTCTGTCCCTT-TGTCTAGCTTT-TACTTTGTA-AATGTGCCC---ATTGTCATCACATAT-TGAGT--C--A-CTTGAA---A-AG---AATC----TTC---AGTA-------CGTCCCTGAA--AGTC----TA---CAAA-----CCTTTTCAAAAATTCC--CA-TTAAAGA--------AAAGG-ACCCAG-GGTTGAAGATT-GC----AT---TGA--TTGGACAGACAATT---TT---GCTAATGACGAAA-CACGCT-CCACC-A-CTACAA-ATAGGTCTAGGGG--TGCAGCCCCATCACCATTTG-G-CA-TCAAACTTTCTTATGGATACGCTGCA--TTC---C--TTA---GTATTTTGG-A-CCT--CATA-TT-CGC-GTTTTGC-----GTTTTT--AAGCAAG-TA--CAGTCATT---TCACAATGA-ACAGAC-ATT--CCAGG-------CTTTA-----AA---A-AA---GG-ACAATTCCTCGAATTCGTCGCCGACAATGTGGATCACAA
gi|10 : cCTACTAGA-CAA-GACGCT-TGGGCAGACTAGA-TTTATGCTAGAATAGAAG-TGTAAAT-GATTTGCATGCTGCTGATGTCATCCAT-A-ATCAAAATTGTAGTGTAAATTTTC-GCACAGGCAAACACACACCTAAAATAT-TATCTCCCTCCTCGACCG-AAA---CCA-AGGGTGGTATACCTAATAATTGACAGTGATATTACCGACGCTTTTCTTAAAGTGGTGAACTATCTGCAGGAGAATGATTACAAACAACATCAAATGGCAGATGTC-ATTGCT--AT--GATAAAGAGC-CACTGTGTTGATGCATACCCTCCTTTTTACTTGAAAAAGAAAATATATG------AGAATTTTGGGGATGAAATCATCATGACAGAA
gi|11 : tgAACTGTCAGATCTG-GTTGCT--AA--AATGAAGGGC-TACTGTGGTGATGAA-A---------TCATATG---------TTAT-TG------AGCATTTTGGGGATGAAATTATCATGACAGAAGAGCAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGCAAGA-TC-----TTTT---A-------TACGATCGGCCCAAAACGGTGGACCAGACTTTTGAGAAGCTC----AATAT---TATTAC----TA--CTGCTGCT-AAGCTGA--TA-AAAT-
gi|13 : tnaTTTGTGGTACAGACTGCAAATCTCAATTAAATTAAAAGAGGGGCATGATGTAATTATATGCCTGCGCAAAACCTAATGAATGATTCACCAGAn
gi|14 : atcgcaacaaAGAAG-TATTAAT-GATTTGCATGCAGCCGATGCT-TCT-T-ACATCAAAACTGTAGCGTCAATTTTTAGAACAG
gi|16 : ttgTTAT-TG------AGCATTTTGGGGATGAAATTATCATG
gi|17 : gtgatanatcatatgGN---TTTT---A-------TACGATCGGCCCAAAACGGTGGACCAGAC
gi|2 : tttaaaCTCAAAGTTATCGAAAATACAGGTGCAAGTGAACTGTCGTCGTAAATGTGAACACGCATATAGAATGATCATTTAAAATTCTTTAAATGTGTCGTAATGTAACTGAGAATA--ACATTTT-AT-----CAACTACATAATCATAAAACATTATTTTATAGAttna
gi|2 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatTTATTTTAT--AGATTCAGTGTACGGGCACCCATTGGTGTTACAATTCCATTAGTCATCGTT-------------GGTTGTAACTTTGAATGCGGTTTCTGTATTATCAAACC-GTATATATAGAGTTAGAATTCTT--TTT--TTTAAATTTACATCTGTTCTAACATTGTTTTGAATATGGAAAGACTAGAAGACTGTGATTAGTGAATCGGTGACGAAAATGGA--CTGATTTGTCTTCGTAAGAAGGACAGT--ATAG---GTATCAATAATGCTGCCCAGAAAAGGAATAGCCATCATCGCACACAACCTGGACAATACTGTATGTGCGCACAGGATGCAAGGGTCGATTAACAAATTCGATTGAAATAAGCAAATATCCTACAAAGAAAGAAAAAGCAAGTCAAATCCTCCTGCCAATTAAGAGTACACCTATTTTCAAAT-AGAACAGA-CTTTTTCAGTCCGTGACCCCTGCCACTTTTGTGA-ACAGACTGCCAAACGCAATCAAAATAAAAGA-GGGCATGATttcagtgtacgggcacccattggtgttacaattccattagtcatcgttggttgtaactttgaatgcggtttctgtattatcaaaccgtatatatagagttagaattcttttttttaaatttacatctgttctaacattgttttgaatatggaaagactagaagactgtgattagtgaatcggtgacgaaaatggactgatttgtcttcgtaagaaggacagtataggtatcaataatgctgcccagaaaaggaatagccatcatcgcacacaacctggacaatactgtatgtgcgcacaggatgcaagggtcgattaacaaattcgattgaaataagcaaatatcctacaaagaaagaaaaagcaagtcaaatcctcctgccaattaagagtacacctattttcaaatagaacagactttttcagtccgtgacccctgccacttttgtgaacagactgccaaacgcaatcaaaataaaagagggcatgattt
gi|3 : tcaatttaaattttgctagcaactaattgcaaaagaattttttttttttggcaaactgctctttagtgtatgtaaaacaatatataaaaaatctaatttaatctaatgtgcagaaataccatatctttatgtaagaaatttgttgatagcgcccttcgttttctatcatagcgtgctttcagcgacctcatgacgtagtcgttgcgtaagttagcactaaaatattctagcttgtttttatgatctatattcgtacaagaatcaatgtaaacaaattaaaaactattgcaacaaacgagacgttacgcatctcaaagttatcgaaaatacaggtgcaagtgaactgtcgtcgtaaatgtgaacacgcatatagaatgatcatttaaaattctttaaatgtgtcgtaatgtaactgagaataacattttatcaactacataatcataaaacaTACAA--TCGGTTTAGGCG--TTCAATTACACCACCATTTTTG-C-TTCAAATTTTTTGATCGACACATTGTA--------CAGTTG---GGATTTTG----CCT--CTTC-TTACGCAGAGGTGC-------------AATCCAG-TG--CAACTGTA---ACCCAAGGA-ACAAAT-ATT--C------------TTTG-----GATTCACACCCCGG-GCGATT--TACAATTTGTTGCGGGCAATGTGG--CACAAtt
gi|4 : AAGTGCAGGTGAACAGTCGTCGTAAATGTGAACACGCATACCAAATGATCATTTAAAATTCCTGAAAGGTGTCGTAATGTAACTGAGAATG--ACATT---GTATC---AACTACGTAATCATAAAACATTATTTTATAGAATATAATTAAAAATGTAAGGAAGTAAAAATTATTCTTTTACACCGCATTGCTTATT------G--TTCAGTGTATGGTCAGCCATTCGTATTACAATTCCATTAGTCATGGTTCAGTGACGCTACTGGTTGTAACTTTGAATGCGATTTCTGTAAAATTAAGCCTGTA-ATATAGTGTAAGAATTTTTCTTTCATTT--CATTTACATCAGTTCTAACATTGTTTTGAATATGGAAAG---------CTTTG-----TGAATCGGTGACGAGAAAGGA--CTGGTTTGTCTTCGTGAGAAGGACAGTGTATAG---GTATCAATGACACTGCTGGGAAAAAGGATACTCGTCTTCGCACACATCCTGGATAATACTGAATGTGCATACAGAAAACAGGCGTAGATTTACAAATTGGATTGAAATAACCAAATACCCTAGAGATAAAGAACAAGCAAGTAAAA-CATCCTGCC----AAGAGTACACCTATTCTCAGATCAAAATAGA--TTTTTCATTTCGTGACCACAGCCACTTTTGTGG-ACAGACTGCCAAACTCAATTAAATTAAAAGA-GGGCATGATGTA--TAT---CTTGCGC-GAACC-----AATGATTT-CCAGACTAGTATAAAATCTACTTGTTCTACTAAA-CAA-GACGtgttcgacttttggatggaactctcaatacatttcatgcagggtattattgcgggtctgacaccagcattcgatccaatcagcaaagtttatcgagcgacagtatctaagacgagttggtttggctgggaagattacaaggttgcgtcatcagcaaactctgatatagaaaactctgaaatacaaagaaatcaaaggaactaaaggttatggacaataatggaaatgtgtacctggcttctcaacgtaatctgaaccttaagatcaccaatgcccatgtggtcaggattgatgcaggtatgcatccaaaaggggagtgtatccaggaattcatcaattcaccttcttttcccaatgattgccttgatcctggtggacctaacctgcatcttttccaccctaagcactttgtcaatgggaattgctgaaccgctatgaacaaaggcagtggtaactattcgatcaaccttatatttggaaggcgtgaaaaattatttccatggatcaaagtactaagtccgattcgacgatagtgttgggcttggtggatttccaacactattatgagcttcttggaagcattgggcaatttaatgcgtgggagctaatggttttgcaagatcggtattggaaacagtgtatgcaagtcagctgtcaatcatcattatgctggtgtgaaaggctgttgaaagagccattacgaggtcatt
gi|5 : gcatttgaatcgatgtaaaccaatttttaaacagacgcaacactcctcaCTACTAAAACAAAGACGCCATGGGCAGATCAAAATTTATGATACTAT-GAAGCTGTAAATTGTTTTCCATGCTGCTGA-GCCATCTATCA-ATCAAACCTGTAATGTAAATTTTC-GCACAGGCAAACACACACCTAAAAAATATCTC--CCTCCTC---CGCAAA---CCAGAGAGT--TAGACCT----GTTGAC-----CTTTACTGACGCTTTTCTTAAAGTGGTGAACTTTCTGCAGGAGAATAA---CAAACAACATCAACTGTCAGATCTTTGTTGCTTAACCAAATGAAGGGCGTACTGTGT-GATACATG-----------ATATG---------TCAT-TG------AGCATTTTGGGGATGAAATTA-CATGACAGAAGG-CAAAGAAAATCAACTGTAATAACAGTACGAAAAACAGC
gi|5 : CTGCTCAAGCTAAAATATAAATGCTGACATTC-GTGCCTTCT---TAGCTCTATAC--TGAATATTGTACCCTTTCTTGTTGTCAAATATGTGAAC--CCTATCTTCAACGCATAGTGCAATC----TAC---AATA-------CGTCGCATGA--CGTC----TCTCGCAAT-----CCTTTT-AAAGCTTCTTACA-TCGTCGATCTACTATAAAGGAACCCAG-GACT-AAGATTGGC----AT---CGACTTTGGACAcaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctctgctcaagctaaaatataaatgctgacattcgtgccttcttagctctatactgaatattgtaccctttcttgttgtcaaatatgtgaaccctatcttcaacgcatagtgcaatctacaatacgtcgcatgacgtctctcgcaatccttttaaagcttcttacatcgtcgatctactataaaggaacccaggactaagattggcatcgactttggacata
gi|6 : ctactaaaacaaagacgccatgggcagatcaaaatttatgatactatgaagctgtaaattgttttccatgctgctgagccatctatcaatcaaacctgtaatgtaaattttcgcacaggcaaacacacacctaaaaaatatctccctcctccgcaaaccagagagttagacctgttgacctttactgacgcttttcttaaagtggtgaactttctgcaggagaataacaaacaacatcaactgtcagatctttgttgcttaaccaaatgaagggcgtactgtgtgatacatgatatgtcattgagcattttggggatgaaattacatgacagaaggcaaagaaaatcaactgtaataacagtacgaaaaacagccaccgctctctcacacagccataatcttacaaataacgagacccaataaattcgtggtggaggcgcaggatctgtcctgagcacaggcttcataaatgccaataatattcaacactctctCAGCAAGGCTCAAGCTTTTC---AACGGCTCTACATCCGGCCCAAAACGGTGGACTAGACAT-CGAAGGTCTCCGGAAACACATGCATTACCT--TAGCCTGC-GCT-AAGCTGA--TCTGAAT-TGGACATTCTGTCTCTT-T---ta
gi|6 : TAT-TGAGTGTC--A-CTTGAATG-A-AT---TATCGATATTCTGGAGTGACAAAGGCGTCCCTGAAAAGGTTGTTGTT---CAAAAGGCGTCTTTCCAAATTTTTCTACAATTAAAGA--------AAAGGAACCTGGAGACTGAAAAT-GGCTCTGATTGCCGAC-T-GGACAG-CAATTGTCTTAGGGCTGA--ACGAAAGCACGTTGCGACCTATCTACAACATAGGTATAGGGGGCTGCAGCTCCATCACCA-TTGTGTCATTCAAAGTTTCTTATAAATACG-TGCAG-TTCCGGC--TTA---GGA---TGG-A-CCTTGCATA-TC-C------TTCC-----G-TTTT--gttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattacctattgagtgtcacttgaatgaattatcgatattctggagtgacaaaggcgtccctgaaaaggttgttgttcaaaaggcgtctttccaaatttttctacaattaaagaaaaggaacctggagactgaaaatggctctgattgccgactggacagcaattgtcttagggctgaacgaaagcacgttgcgacctatctacaacataggtatagggggctgcagctccatcaccattgtgtcattcaaagtttcttataaatacgtgcagttccggcttaggatggaccttgcatatccttccgttttnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|7 : cagcaaggctcaagcttttcaacggctctacatccggcccaaaacggtggactagacatcgaaggtctccggaaacacatgcattaccttagcctgcgctaagctgatctgaattggacattctgtctctttgttggcgtgaggaaaagaaaggataatgatagttaaataattagattgatataacaatatgagccaatatgtaaccaatctagattaccATA-GCTGCACATTC---C--ATAAAGGAATTTTAGTATCCTA-CATACTT-CGG-AGCCTGCAAAACG-TTTTGAAATCAAGATAAACAGCCATTCTCTCACAAGGACAAAGACAATTA-C--AGAAGACTATTTTGACCCAAA---A-AT---GGCGCAATTCCTTCAATTCGTTGCCGACAACGTAGATCACAAnnnnnnnnnnnnnnnnnnnnnnnnntatgacaatatacaga
gi|8 : CTGATGCCATCTAT-C-ATCACACTTGTGATGTAGATTTTC-GAACGGGCTAACACACACCTAAAATAT-TCTCACCCTCCTAGAtgtgcgctcaaactgcatgggtatggtaacatcaattccatccaggtaagggcataattgttgctcacaccttggtacaaaggaatagcaaacggttatcctaaacctttgaatgtttcattcagctgacctggtcactggctgggaaattgataccccatcttaatattctaataaaacaaacccccagaaaccacactaaaattcgtcatcatgcagaatgcgaaatgtctccacaagcaatatagaataggaacagaaataaaacggatgggattccatcttaagtctactacaattaatatttctttcaaagcgattgtatggctcttcgataacttctactccaagttggtcaggactgactgacaggag
gi|8 : GATATTACTGATGTTTTCCTTGAAGTGGTGAACTATCTGCAGGAGGAGGATGGCAAACAACATCAACTGTCAGATATC-GTTGCT--AT--AATAAAGGGC-CACTATGCTGATGCATACTCGCCTTTTTACGTGAAAAAGAAATTAC-TGTATATGAGCATGTTGGAGATGAAATCATCATTACAGAAAATCAAAGAAAA-------------CAATACAAAAAACAGCAAGA-TCGA---TTTTCAAGGCTT--CTACAATCGGCCCAAAACGGTGGATCAGACATTGAAGAAGCTC----AACAT---CATTACTTAGTA--CTGCTGCT-AAGCTGA--TA-AAAT-CGGA------------------TAACTTT-TAATTTGTA-AATGTACTC---CTTGTCGTTAGATAT-TGAGT--C--A-CTTGAA---A-GG---AATC----TTC---AGTA-------CGTACCCGAA--GGCC----TT---AAAA-----CCTTTTCAAAtattactgatgttttccttgaagtggtgaactatctgcaggaggaggatggcaaacaacatcaactgtcagatatcgttgctataataaagggccactatgctgatgcatactcgcctttttacgtgaaaaagaaattactgtatatgagcatgttggagatgaaatcatcattacagaaaatcaaagaaaacaatacaaaaaacagcaagatcgattttcaaggcttctacaatcggcccaaaacggtggatcagacattgaagaagctcaacatcattacttagtactgctgctaagctgataaaatcggataacttttaatttgtaaatgtactccttgtcgttagatattgagtcacttgaaaggaatcttcagtacgtacccgaaggccttaaaaccttttcaaaa
gi|9 : ctgatgccatctatcatcacacttgtgatgtagattttcgaacgggctaacacacacctaaaatattctcaccctcctaGCCATT---TCACAAGGA-ATGAAC-TTTTCC--GG-------CTATG-----AA---A-AT----G-GCAATT-CTTCAATTCG-TGTCGACAGTGTGGATTAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATAAAAAATCTAATTTAATCTAATGTGCAGAAATACCCTATTTCTATGAAAGAAAATTGCTCATAGCACCCTTTGCTTTATGTCACTGCTGCGCTATCATAATGTGTCA
Unaligned ( gi|15 ): GGCCTTCACTTACACCATGTCTGTTCAACATAGTTTTTGAAATCAGACACATTGTACAGTCGGCAT