lowQualScore : 111111111111 111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11111 1 111 22 333333333333333 11111111 111 11 2222 000000000000 33333333333333333 22 444 33 1 3333 1 1111 33333 3333333333333 3333333333333333 111 4444444444 111 4444444444444444 1111 2222 555555555555555 11 111 555555555555555555555555555555555 44444444444444444444444444 22222 1 444444444 333 000000000000000000000000000000000000000000000 111 111 111 222222 44444444 2222222222 11111111 111 11111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 1 1111 1111111 222222 2222222 666666666666666666666 22
lowQualScore : 0 6 00 8 8 11111 0 5 333 1 22 5 5 7777 5 5 000000000000000 44444444 333 888 22 4 4 3333 444444444444 5 5 88888888888888888 66 888 4 8 00 8 4 2 88 2 4444 000 88 5 4 0 4 2 7777 5 99 9999 888 66 88888 2 9999999999999 5 8 3 5555555555555555 1 5 6 99 111 1 8 8 5555555555 66 1 111 6 4444444444444444 9999 0000 555555555555555 6 6 55 111 6 777777777777777777777777777777777 99 66666666666666666666666666 33333 6 2 6 3 666666666 3 777 111111111111111111111111111111111111111111111 6 6 8888 5 5 000 5 555 000 666 4 2 5 999999 00000000 5 777 7777777777 888 66666666 555 66 66666666666 66 77 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 222 5 5 2222 4 6666666 4 4 111111 55 4 0000000 777777777 000000000000000000000 8 55 4 4 11
lowQualScore : . . .. . . ..... . . ... . .. . . .... . . ............... ........ ... ... .. . . .... ............ . . ................. .. ... . . .. . . . .. . .... ... .. . . . . . .... . .. .... ... .. ..... . ............. . . . ................ . . . .. ... . . . .......... .. . ... . ................ .... .... ............... . . .. ... . ................................. .. .......................... ..... . . . . ......... . ... ............................................. . . .... . . ... . ... ... ... . . . ...... ........ . ... .......... ... ........ ... .. ........... .. .. .......................................................................................................... .. ... . . .... . ....... . . ...... .. . ....... ......... ..................... . .. . . ..
lowQualScore : 2 7 77 6 9 33333 0 0 888 4 44 0 0 5555 0 0 222222222222222 00000000 888 888 22 4 4 3333 888888888888 0 0 88888888888888888 44 555 6 9 00 9 4 8 00 2 2222 555 00 0 4 0 4 6 9999 0 11 6666 888 99 22222 2 4444444444444 0 9 4 5555555555555555 7 7 7 22 777 0 0 0 8888888888 22 7 777 7 7777777777777777 3333 8888 222222222222222 7 7 88 777 7 222222222222222222222222222222222 22 22222222222222222222222222 33333 7 5 7 3 888888888 5 555 777777777777777777777777777777777777777777777 0 7 3333 7 7 000 7 444 000 000 3 3 0 666666 44444444 0 111 8888888888 888 66666666 888 11 44444444444 99 22 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 99 111 0 0 8888 4 5555555 4 4 888888 55 4 7777777 666666666 111111111111111111111 0 55 0 0 88
consensus : AATTAGAACGTCAAAA-ATATTGTGCAGTGT-TTATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT--AAA-----T----ATCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA-A------CATTCTA-GT-TAATTA-GTAN-A--A-AT-G-ACGTCA-TTGAT-CAAAACTGAT-GAT-GTC-AT-CGTTT-TATTGTTNAT-AAATTAN-TTTTA-CAAAGGGC-AAT-AACTC-TTGTCNAT-T-TATG-CACNTT--TNTT---AG--CAA-N-AACATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATTTTCGTA-T--ATTTA---AATGAAAA-TG-TT-T-----TATCTTTAAATTAC---AA-CTGANC---------GCTTTCACT--G-GGAATA----GCTGCAT-A----C-T---TTTTAA-TTTGC-AT--GTG---AAAATA-GTC--------AATTTT--T--AA---TGG---T-AAAATC--AAA--TA-TAA--C--A-GC---CA----TTAAAA-----AA-TGAANAAAT-G-AA--CA-GG--ACTCAGA--TTTTTTTTTCA--GAAA-TGACAAATGA-TTANTA--NATGTTT--TTTTGTTTTATA-TTTTCCATCACACAAA-T-TC---A-GAAN--TAATTA---GATAC-C-CTAGCGTC-A--A---CTGATA------ACA-AAGTGCAAAA--CTCC--TA----T---TTT--C--A--ACATAAGTNGA--TT---TT--T---ATC--TAAAG-GAA-----T----G-GCTCT--GTTAC--A-GCATG--ACAAC-GAG--T-GATAT--------------TG-T----C-AAA--T-AA--C--ACAC---CCAT-T--ACAT--TCAAG-T-ATGA-TAT---AGTAATA-TT-C-----TC-TG-AAAA-AAT--TTC-ATGAAGATT-GGTGACATG-A-C-TTGTCCAAC-C------T-----ATT----TTGA-TGC--TT-A-CAGAGAATNGCT
Reference ( gi|3 ) : AATTAGAACGTCAAAA-ATATTGTGCAGTGT-GTATCATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT--ACA-----T----ATTTGCATTT---ATG-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCACATATGCCCATTCTA-GT-TAACTAGGTAA-A--A-ATGG-ACGTCAGTTGATGCAAAACTGAT-GATGGTC-AT-TGTTT-TATTGTTTATCAAATTAT-TTTTA-CAAAGGGC-AAT-AACTC-TTGTCAA--T-TATG-CACTTT--TCTT---AG--CAATC-AGCATGATTTTCAAACT--TCGAGTTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATTTTTGTA-T--ATTTA---AATGAAAA-TG-TC-T-----AATCTTTAAATTAC---AA-CTGAAC---------GCTTTCACT--G-GGAATA----GCTG-AT-A----C-T---TTTTAA-TTTGC-AT--GTG---AAAATA-GTC--------AGTTTT--T--AA---TGG---TAAAAATC--AAA--TT-TGA--C--A-GC---CA----TTAAAA-----AA-TGAAGAAAT-G-AA--TA-G---ATTCAGA-ATTTTTTTTTCA--GAAAATGACAAATGATTTAATA--AATGTTTT-TTTTGTTTTATA-TTTTCCATCACACAAA-T-TC---A-GAAT--TAATTA---GATAC-C-CTAGCATC-A--A---CTGATA------A-A-AAGTGCAAAA--CT-C--TA----T---TTT--C--A--ACATAAGTTGA--TT---TT--T---ATC--TAAAG-GAA-----T----G-GCTGT--GTTAC--A-GCATG--ACAAC-GA---T-GAT-T--------------TG-T----C-AAA--T-AA--C--ACAC---CCATGT--ACAT--TCAAG-T-ATCA-TAT---GGTAATA-TT-T-----TC-TG-AAGA-AGT--TTC-ATGAAAGTTGGGTGACATG-A-C-TTGTCCAAC-T------TT----ATT----TTGA-TGC--TT-A-CAGAGAACTGCT
gi|5 : AATTAGAACGTCAAAA-ATATT-TGCAGTTC-TTATTATTTA-T---T-AATT-A-ATTTTTTTTTT-GTATTTTT-GGTG-T-CTTAAGGT--AAA-----T----A-TTGCTTTT---A---AACACT--T---TTT--AAA-AATA-TAT---TTTT-GCA-----------TCTAGGT-TAACTA-GTAA-A--A-ATGACACGTCATTTGAT-C-AAACTGAT-GAT-GTC-A--TG-TT-TATTG-TTATC-AATTAT-TTTTA-CAAAGGGC-AA
gi|7 : ggggtgccaagtacctctaaatatgcctatgattatgacatgttttgcatggtccaggttagaatattattgatataccttaatgtacgtagccatttaaaggttggatttttttaatatattttttttaagttgcctcaagccatttaggccttagaattctgaaacagttttcatcaggattctatacatatagtgttgggacaaacttttaaaaattatgaatcacgactaaaatttaagtccaatctctctctaatagattgtatactagactcataactaaatccaaacattgtagactttgctattataccaagttcccattcttcggcattaatcacagattgtattttgagcatgtttctaatagaatttgggaaatcactgtttagtaagtgtagttgcctttcagttgtaaggaaaacctctaaatagtgcaatttgcttatataAATTAGAACGTCAAAA-ATATTGTGCAGTTT-TTATTATTCA-T---T-AAT
gi|4 : gaggtgccaagtacctctaaatatgccattgattatgaccatgttttgcatgtccaggttagatattattgatttaccttacatgacgtacatttaaagagttgtttttttttaaatatattttttttttaaggtttgcctcaagccattaggccctagaattctaaaccaaaaagttttttcaattttcgggggatttttcatatacatatattacaaaataaatggtgtggaccaaacttttaaaaaatcataaatcacgacttaaaatttaagtcatatcttctctaatagcattgtatatatagacttcatttactaaatttcaaacatgtagactttggctatgataccaaagtcccattcttgcgcatatcatatatttgctattttgagatgtttctaacagaatttgggaaatacctgtttagatagtagtttcttttcaattacagggaaatcctaaaagtgcatttgcttatataATTACAACGTCAAAA-ATATTGTGCAGTGT-TTGTTATTTAGT---T-AATTAA-A---TTTG-TT-GTA-TTTT-GATA-T-CTTAA-GT--AAA-----T----ATCTGCA-TT---ATA-AACAC---T---TTT--AAA-AACA-TA----TTTT-GCA--------CATTCTA-GT-TAATTA-GTAT-T--A-AT-G-ACGTC-GTTGAT-C-AAACTGAT-GAT-GTC-AT-CG-TT-TATTGTTAA--AAATTAG-CTTTA-CAAAGGCC-AAT-AACTC-TTGTaa
gi|10 : ggggcttgctcgacaattcactaacagaggatgttgtgccaccactccccccaattcttaaaaagacagtccttacggcctcatacggtttgggggctcgcttgattgtttattttttatatattaggacctagaaatactaaaccgcttctcaggattctatactagtacacatgatattatcatatttacaaacaataaagttatctcaacattgttggacaagaacttttatcaataggaatcaggactagaaacttatatgtacattattttcatactattatagattgtattactatttcctcacacacatgttacctaatcatactaaaagcgccagttctacgtatcgataattaatatcaatatcgcatttattcttcatacaccacaccacattctcagtaattatttctgacagaatccttctttcaccgctatcttacagttgttgagaaaaatcaaacatagcaagttgctgttaaaatAAAACTTTAAAAGATACTGTGCAA-AT-TTATCATTTA-T---G-AATTTA-A---TTTTTTG-GTA-TCTT-G--T-T-TCAAA-GT--CCGAGT--T----ATTTGCATTT---ATA-AACACTTTT---TTT--AAA-AACAGTAGTTTTTTT-GCA
gi|12 : tactacttatcggtacattaaagctgggttttttaatttttttttaaaagttgcctcaagccatataggctagaattctaaaatagtttcacaagacatgtctatcattatattacaaaaaaagttcagttatgatattgtaggacaacgtttaaaaaaattcatgaatcaaccacagaagtacttcagatttctctgataaattgtatagatttcattactatttcaaaagtagaacttaggctatcatataccaaatcgtgtctttcgcaattgattattcattctattctcccaacatatttaggatatatgaagaggaaacatgcatagaaggcaagttgcttatacaaaatagAACGTCGAAA--TATTGTGCAGTGTTGTAT----TA-T---T-AATT-A-A---ATTGTT--GTA-TTTTTGGTC-TCTTTAA-GG--AAC-----T----ATCTGCATT----ATA-AACAC---T---TTT--AAA-GA-A-TA----TTT-----CA------CATTCTA-GT-TAATT---TAT-ATTA-ATG--ACGTCCATTGAT-CAAA-CTGATTGATG-TC-AT-CGTTT--ATTGTT----AAA--AT-GCTTAACAAAGGGC-AAT-AACTC-TTGTCTA--T-TATG-CA-TTT--ACTT---AG--CAAAT-A-CATGTTTTTC-------------TTATTC-T-TTAAATTA
gi|2 : tacacccacatactcagtaattatttctgacaggaatttaaaataattccttctttcacaggtatcttacagttgttgagataattcgaactgagcagttgttgtaaaatatagacAAAA-ATATTGTGCAGTGT-TTGTTATTTA-T---TTAATT-A-A---ATTGTT--GTA-TTT--GGTC-T-CTTAA-GT--AAA-----T----ATCTGCAT-----ATA-AACAC---T---TTTTAAAA-AATA-TA----TTTT--------TGCACATTCTA-GT-TAATTA-GTAT-T--A-AT-G-ACGTC-GTTGAT-C-AAACTGAT-GAC-GTCAAT-CG-TT-TATTGTTAA--AAAGTAG-CTTTA-CAAAGGGCAAATAAACTC-TTGTCTA--TCTATG-CACCAT--TTAC---AA--CAAAA-AACATA--TTTC--ACT--TCGA--TTATTT-C-c
gi|1 : tttgccaccccccctccacttggcgcagtgtatctattactgttattggggggcttagttacagttatttagatgtttgccccctcaccccccctaatttaaagaacagtcctaaacgctatgtttgtttggggggggggttaaggttttgttataggcctagaatcttaaaacagttttcatcaggatctattacactacatatgtatgattattaacaaataaaagttatgttataatttttggaaaactttttcataatcaaggactagaaatttactgtccaatttctcaataaattgtatagatttattaacattttccaaacaatgtaaccttagcctacatcataccaaatcccgttcttacgtatgaattttcattcgatttttttatacacacacaattgcttcttaattctatagatacacacacatatactacacacattctcagtatttgatttctgacagaatttaagaaatgatttcctctttcataagtatcttaacagttgtttagaaaattcgaaaatagccagttgctgtttataatatacaaccgttgCAATGT--TATTATTTA-T-----ATTT-ACA---TTTATTTTGTA-TTTT-GTTT-T-TCTAA-GTTAACA-----CTGAAATTTG-ACTT---GTATAACAC---T---TTT--AAA-TATT-TA----TTTT--------TGACAATTCTA-GTCTAACTAG-TAA-A--A--TTG-ACGTCA-TTGGT-CAAA-CTGAT-GATG-TC-AT-TGTAT-TAAT-TTTATCAA-TTAT-TTTTA-CAAAGGGC-AATAAACTCTTTGT-AATTT-TATGTCATTTTAACCTT---TGCCCAATT--TCATAA-TTTCAAACTAATCGA-TTTATTT-C-CGTAATCAATAAACA---CT--T--TTTTTATTTTGATATT--ATTTA---AATGAAAA-TG-TCTT-----TATC--TGGAT-------G-GTGGACGTGGGATCAGCTT--ACTGCG-GAAATAGCATGCTG-GT-GGT--T-T---TTTTAATTTTGC-ATC-GTG---AAAATG-GTCATTTTTAGAATTTT--C--AA---TGGGTTTAAAGATC--AGA-----TGAC-C--A-GC---CA----TTAAGATAATTGA-TGATGAAAT-G-AAATTA-GGC-ACTCAGA----TTTTTTTCA--G-AAATGACAAATG---TCGTA--TATGTTTTATATTGTTCCA-A-TT-----TCACACAAA-T-TC---ATGAA---TAATTA---GATAC-C-CTAGCATC-AT-A---CTGATA------ACC-AAATGCAAAA--CTCC--TA----TTGATCT--C--A--ACA-AACGTGA--TT---TTAAT---ATT--AAAAGCGAA-----GAGGAG-GCTCTCCCTTACCAA-GGTCG--ACAACTGA-----AAT-TCGAGTTACACTCTGTG-T----CAAAA--T-AA--CCGACGCCGGCCATATCAGCAT-----AGTT-AT-A-TAT---AGTAATA-TTGTAGGTGTC-TG-GGGATAGTGATTC-----GAGTT--GT-ACATG-A-CAGTGT-CAAC-CGCCATATC----ACG----TTGAGTGC--TT-AGCGGGGAGGTGCcga
gi|11 : gttgaatagtagatgataagtttgtattatcagttcttcatggcaaagatcctaaatcgtgtacaatttgctttatataaatttagaacgctccagaaaatattgtttgctagtgatgtaaactgtgctggaaattttactcacATTTA-TGGAT-AGCT-A-A---TTTTTTTTGTA-TTTT-ATTTGT-TTTAA-GT--AAAAAATTT----ATATGCATTTTAAACC-AACAC---TCCCTCTGGAGA-AATA-TAACAATTTT-GCACAT--------TCTA-GT-TAACTA-GTAACA--A-AGTG-ACGTCA-TTGAT-C-AGACTGATGGAT-GTCGATCTGTTT-TGT
gi|14 : tgagatgttcataaacaacagaatttggggcaatcactgattagaatacttatttaagatatattttcttacagtgcatgtatgctatttgaaccacacgagtcctaattaaaatctgcatattatgcttatataaaagtttagaaacgaatgaatattcaaaatactttggcaagggaatggatgttgttattaaatTTTAGT---T-AATT-A-AA--TTTGTT--ATA-TTTT-GGGT-T-TTTAA-GT--AAA-----T----ATTAGCATTT---ATA-AACAC---T---TTT--CAA-AATA-TA----TTTT-GCA--------CATTCTA-GT-TAATTA-GTAT-C--A-AT-G-ACGTCA-TTGAT-C-AAACTGAT-GAT-GTA-AT-CG-TT-TATTGTTAA--AAATTAGATTTTA-CAAAAGGC-AAT-AACTC-TTATCAAT-T-TATG-TACATT--TATT---AG--C-ATA-AACATGATTTTCAAG-T--TCGA-TTTATTTCC-TTAAATCA---AATAT--GAATT--TTTTTATTTTTGCA-T--ATTTA---AATGAA
gi|21 : TT--AAATCATA-TA----TTTTTGCA-ATA----CATTCTG-CT-T--TTTGGTAA-ATAATATAA-ACCTCA-------CA---TTGAT-AATTCTC-GA-TGTTTACATTGATTAGAAACTGAT-TT--A-CAAAGG-C-A-T-AACTC-TTGTCGA--TATATG-CATATA--TATT---AG--CA--CAAACATGATTTTTAAACT--TCGA--TCATTT-C-CT
gi|23 : taaaaattaccctgtcgaatttaAAACTGAT-GATG-TC-AT-TGTTT--ATTGCC-AT-AAATAAG-TTTTA-CAAAGGGC-AAT-AACTC-TTGTCAAT-T-TATG-CACTTT--TTTTAAAAG--CAA-A-AACATGATTTTC-AACT--TCGAta
gi|9 : atcC-AAT-AACTC-TTGTCTA--T-TATG-CA-TTT--ACTT---AG--CAAAT-A-CATGTTTTTC-------------TTATTC-T-TTAAATTAtta
gi|15 : TT-TTTTCAC--T-GATG-CACATT--TATT---GG--CAA-A-AACCTAATTTTTAAACT--TCGA-TTTATTT-CCTTAAATCAA---ATATGACA--T--TTTTTATTTTTATA-T--ATTGA---AATGGAAA-TGTTT-T-----TATCTTTAAATTACAATAA-TTGAAA---------AC-TTCACT--G-GGAATA----GTTGCAT-A----A-TTTGTTTTAA-GTTGC-GT--GTG---AAAATA-GTA--------AATTTTTGT--AA---TGG---T-AAAATC--AAA--TA-AAC--C--T-GC---CA----TTAGAA-----AA-TGAATAAAT-GAAA--CA-GA--ACTCAGA-GTTTTGTTcaaactgacagctcaccatggaataagctgcattacgtttttaatttgccatgtgaaagagccaaaatcaggtataacccagtcaattaaaaaaatgaatagatgaaaccaggactaagatatttttttttcagaaatgacaatgagttaaatgttgatatttcaatcacttaagtgtccctagaacggtaattattagatatacctagctcattgataacaaagtgcaaaaaactcctttttttcacataagtgaatttatctaaaagaaaagaatgtatctgttaccaggaacgagtagatgtccaataactacatccatacattcaagtaatgattagtaatattctctgaaaatttcaatgaagattggtgacatgaccttgtccaacgatttgatgcttacagagaatggctctt
gi|6 : -AGCATAATTTTTAAA-T--TCGA-TTTATTT-CCTTAAATGAA---ATAT--GA--TAGTTCTGATTCTTTTA-T--AATTA---AATAAAAA-GG-TT-T-----TATCTTTAAATTAC---AA-TTGACT---------GC-TTCACT--T-GGAAAG----GTTGCAT-AAATTT-T---TTTTAA-TTTGT-AT--GTG---AAAATA-ATC--------ATTTTT--TTAAA---TGG---T--AAATT--GAATGTT-TAA--C--CTGC---CATTATTTAAAA-----GA-TGAAGAAATAA-AA--CA-G---GCTCAGA---TTTCTTTTCA--G-AATTGAC-AATGA-GTATTA--TATA-------------TATG-TTTTGCATCACTCACA-T-TT---A-GTAA--GAATTA---AATAC-T-CTAGCGTC-A--AT--CTGAGA------ACA-GAGTGGAAAA--CT-CG-TA----T---TTTA-C--C--ACATCAATGAA--TT---TT--T---AGC--CAAAA-GAAT----T----A-GCCCT--GTTCC--ACGCAAG--ATA--------------T--------------TG-C----C-AAATTT-AC--C--AAAC---TCA--T--ACAT--CTGAA-T-ATGA-TATTAAAGTAATA-AT-C-----GT-TG-A--A-AAT--TTC-ATGAAGATT-GGTGACATC-A-C-CTATGTAAC-C------T---------------A-TGC--TT-A-CTGAGAA
gi|20 : -TTAAAT--AT-GACAT---A--T--CTG--ATTTTCGTA-T--TTTTG---AATGAAAAATG-T--------------TAAATCAC---AA-CTGACA---------GCTT-CACT--G-AAGATA----GCTGCAC-A----C-C---TTTT------GT-AT--GTG---AAAATA-GTC--------AATTTTG-T--AA---TGG-----AAAATC--AAA--TA-T-A--T--A-CCCCGCA----TTAAGA-----AT-TGAATAAAT-G-AA---A-GAGTACTCAGA---TTTTTTTTC-----------------ATCTATTAGTAACGTTTG-TTGCCTTTTACA-TTCTCTATtggatctttaaaaatgtttaagatacacgga
gi|9 : CAAT-AAC-T--C---T--TGTCTATTAT-GCA-TTTACTTAGCAAAT--ACA-TG-TT-TTTCTTATTCTTTAAATTAC---AAACTGACA---------GCT--CACC--ATGGAATAA---GCTGCATTA----CGT---TTTTAA-TTTGCCAT--GTG---AAAG-A-GCC--------A------------------------AAATC--AGG--TA-TAA--CCCA-GT---CAA---TTAAAA-----AAATGAATAGAT-G-AAACCA-GG--ACTAAGATATTTTTTTTTCA--GAAA-TGACAA-TGAGTTAA-----ATGTT-------G----ATA-TTT-CAATCACTTAAG-TGTCCCTA-GAACGGTAATTATTAGATATAC-CTAGC-TC-A------TTGATA------ACA-AAGTGCAAAAAACT-CCTTT----T---TTT--C--A---CATAAGTGAA--TT---T-------ATC--TAAAA-GAAAAGAAT----G-TATCT--GTTAC-----CAGG--A--AC-GAG--TAGAT-----------------G-T----C-CAA--T-AA--CT-ACAT---CCAT----ACAT--TCAAG-TAATGA-T-T---AGTAATA-TT-C-----TC-TG-A--A-AAT--TTCAATGAAGATT-GGTGACATG-ACC-TTGTCCAAC--------------GAT----TTGA-TGC--TT-A-CAGAGAATGGCT
gi|8 : ATTAC---AA-CTGTAC---------AGCTTCACTT-G-GGAATA----GCGC-AT-A----CTT---TTTTAA-TTTGC-ATTAGTGAATAAAATACGTC--------AATTTT--T--AAAATTGG---T--AAATCAAAAA--TTGTGGACC--A-GC---CA----TTAAAAT----AA-AGAAG-AAT-GAAA--TAGG---ATTTAGA-----TTTTTTCAAGAAAAATGACAAATAG--TAAT---ACTGTTTA-TTTTctt
gi|16 : aactTTTTTTTTTTT--GAAT-TGACAA-TGAGT-AATA--TA-----------GTT--ATA-TTTTCCATCACACAAA-T-TC---A-GTAA--TAATTA---AATAC-T-TTACCGTC-A--AAACCTGATA------ACATAAGTGCAAAT--CTCC--TAGAGTT---TTT--CA-A--ACATAATATTA--TTTTCTT--T---ATC--TAAAA-GAC-----T----G-GCTCT--GT-----A-TCATGGAACTAC-GT---G-GAT-G--------------T--T----C-AA---------------------------ACAT--TCAAA-T-AT-A-TAT---AGTAATA-cctaatacacctcgttacccgaagttcccgatcccgtgtcctaatattacgaatattgattttttttaaacttttacatcacacaaaattcagaattaatagataccgctagcatcaaaactgataacaaagtgcaaactcctattttttcaacataagtgaattttttatctaaagaatgcgttctgtaaccatgacaacgaaggtgatattgtcaaacaaaccacacccatacattcaagtatcaatatagtaataattttcatgaaaatttcatgaagcattgtccaacggattttgatgcttgacagagaatgctct
gi|8 : ttagaaaataataaataaaacaggaacttagatttttttttttt--AATATTGA-TTTT-TTTTAAACTTTTACATCACACAAAAT-TC---A-GAAT--TAAT-A---GATAC-CGCTAGCATC-A--AAA-CTGATA------ACA-AAGTGCAAAC--TC-C--TA----T---TTTTTC--A--ACATAAGT-GAATTT---TT--T---ATC--TAAAG--AA-----T----GCGTTCT--GTAAC-----CATG--ACAAC-GAAGGT-GATAT--------------TG-T----C-AAA--C-AAACC--ACAC---CCAT----ACAT--TCAAG-T-ATCAATAT---AGTAATAATT-T-----TCATG-AAAA---T--TTC-ATGAAG---------CAT-------TGTCCAAC-G------G-----ATT----TTGA-TGC--TTGA-CAGAGAA-TGCTatct
gi|18 : aactattacaactgtacagcttcacttgggaatagcgcatacttttttaatttgcattagtgaataaaatacgtcaatttttaaaattggtaaatcaaaaattgtggaccagccattaaaataaagaagaatgaaataggatttagattttttcaagaaaaatgacaaatagtaatactgtttattttcctaatacacctcgttacccgaagttcccgatcccgtgtcctaatattacgACACAAA-T-TC---A-GAAT--TAATTA---GATAC-C-CCATCATCAA--A---CTAATA------ACA-AAGTGCAAAA--CTCC--TAT---T---TTT--C--ACCACATAAG--GA--AT---TT--TATAATC--TAAA--GAA-----T----G-GTTCT--GTTA------CATG--ACAAC-GAG--T-GGTAT--------------TG-T----CAAAA--T-AAC-C--ACAC---CCA--T--ACAT--TCAAG-TAATGA-TAT---AGTAATA-TT-C-----TC-TG-A--A-AAT--TTC-ATGAAGATTTGGTGACATG-A-C-TT-TCCAAC---------G----ATT----TTGA-TGC--TT-A-CAGAGAATGGCTct
gi|25 : AA-T-TC---A-GAAT--TAATTA---GATAC-C-CTA-CATC-AATA---CTGATA------ACA-AAGTGCAAAC--TC-C--TA----T---TTT--TCAA--ACATAAGTGAA--TT---TT--TA--ATC--TAAAG-GAA-----C----G-
gi|17 : -A--A---TTGATATAACGTA-A-AGGTGCAAAA--CTCC--TAT---T---TTT--C--A--ACATAAAGTGA--
gi|17 : aA--TT---CG--T---ATCGGCAAAG-AAA-----A----A-GCTG---GT-----A-G-ATG--GCA-C-GA---T-GATAT--------------TGGT----C-AAA--T-AA--CTTACAT---CCAT----ACAT--TCAAG---ATGA--GC---AGTAATA-GT-C-----TC-TG-AAAA-A-T--TTC-ATGAAGATTGGTTGACATG-A-C-T-GTCCAAC-G------CG----ATT----TTGAATGC--TT-A-CAGAAAgagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagatggcacgatgatattggtcaaataacttacatccatacattcaagatgagcagtaatagtctctgaaaaatttcatgaagattggttgacatgactgtccaacgcgattttgaatgcttacagaaatggctctt
gi|24 : aaattgatataacgtaaaggtgcaaaactcctatttttcaacataaagtgagagaagtcaaaagtagaagaaagacactagacA-----T----G-GCTCT--GTTAC-----CATG--ACAAC-GAG--T-GATAT--------------TG-TTCAAC-AAA--TTAC--C--ACAC---CC---T--ACATCTTCAAG-T-ATCA-TAT---G--AAAA-TT-T-----CA-TG-ACGA-ATT--Ttggctctt
gi|27 : ATA-CT-C-----CC-TACAAAA-AGT--TTA-ATCCAAATCGG-TGACATG-T-C-ATTTCCAACAT------TTGCCCATTGTGTTTGA-TGC--TT-A-CAGAGAAgtgccgttccttt
gi|29 : -----TC-TG-AAAA---T--TTC-ATTAAGATTGA-TGACATATA-A-TT-TCCAAC-C------TT-----CT----TTGA-TGC--TG-A-GACAGAAtgactct
gi|30 : cA-AAT--TTC-ATGAA-GTTTGGTGACATT-A-C-CTATGTAAC-T------T-----ATT----TTGA-TGC--TT-A-CTGAGAA-TGCtgtctctta
gi|32 : gaACATG-A-C-TTGTCCAAC--------CG----ATT----TTGA-TGCATTT-A-CAGAGAATGGCT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GATGTTTGCCCCACCCCCCCCTAGTTTAAAGCCAGTCCTACGCCTATGTTTGTTTGGGGGGGGGTTATTTTTTATAGGCCTAGAATCTAAACAGTTTCCATCAGGTTCTATTACATACTATGTATTATATATTACAAAATAAAAAGTTATGTTATATTTTGTTGGACATAACTTTTAATCATGAATCAGGACTAGAATTTTATGTCCCAGATTTTCATCTAATAAATTGTATAGATTTTATTACTAATTTTTCAAAGCATGTAACCTTTAGTCCCTACATACCAAAATCCCGTT
Unaligned ( gi|19 ): GGGGTGCCAAGTACTCTAAATATGCCTATGATTATGACCATATGCAGGTGATTTACCTACATATACGTACATTTAAAGGTTTTTTTTTTTAAATATATTTTTTTTAAAGTTTGCCTCAAGCCATTAGGCTAGAAATTCTAAACAGTTTCATCAGGATCTATAAATATACAATGTATATTACAAAATAAAAGTGTTGGACAAACTTCTTAAAAAATCATAAAATCACGACTAAAGTC
Unaligned ( gi|22 ): TTTGCCCCCCTCCCCCTCCACTTTTGGCGAATGTTCTAATACTTTTTTTGTCTTGTCATCACATTACTTAGATGTTTGTCCCCCCCATTTAAAGTCAGTCAGGGACTACGCCTATGTTAGGGGGAGGGGGGTTGTTTATTTTTTATTAGGCCTAGA
Unaligned ( gi|26 ): GGGGTGCCACTACCTCTAAATATAGCCGTATACGTATTTTATGACATGTTTTGCTCTGAATTAGAATATTATTAGTTTACCTTTACGATT
Unaligned ( gi|28 ): TAGAATTTGGGAAATCACTGTTTAGATAGTGTAGTTGCCTTTCAGTTGTAAGGAAAACTTAAATAGTGCAATT
Unaligned ( gi|31 ): CCACCCTCTAAATATACCTATGATTATGACCTTGTTTTGTCTAGATTAGATTGATTGAT
Alignments
lowQualScore : 1111111 111 11 11111 111111 111 11 2222 333333333 11111 111 11 1 1 11 1 1 111 222222 111 1111 111 1 1111 2222222222 11 111 22222222 11111 111 11111 3333333333333 1111 11111 1 22 11 222222222222 1 1111 777777777777777777 111 22222222 1111 11111111 111 11111 3333 11111111 11111 11 22222 2222 11 111 22222222
lowQualScore : 5 4 3333333 8 4 222 0 88 4 4 2 4 4 4 777 11111 222222 5 3 777 4 222 777 11 4 4 5555 4 444444444 4 4 4 4 33333 888 4 55 4 3 0 8 4 8 66 5 7 5 99 55 4 0 4 1 0 5 11 66 1 888 66 5 55 7 3 66 99 0 4 1 555 111111 77 0 5 33 5 000 6 6 6 4444 6 3 77 555 77 999 4 5 5555 5 5 77 5 7777777777 5 5 5 33 000 5 00000000 0 88888 000 77777 5 1111111111111 77 5 5 0000 5 77777 1 5 0 33 777 11 6 555555555555 1 5 1 2 6666 22 111111111111111111 5 5 000 5 5 888 777 888 5 5 2 6 00000000 66 777 4 66 8888 777 77777777 999 0 888 66 888 22222 77 4 9999 4 66 00 4444 999 66666666 33333 0 9999 4 9999 8 00 00000 5555 66 66 4 999 22 777 66 4 555 5 4 888 4 4 55 4 3 5 44444444 8888 4 55 4 5
lowQualScore : . . ....... . . ... . .. . . . . . . ... ..... ...... . . ... . ... ... .. . . .... . ......... . . . . ..... ... . .. . . . . . . .. . . . .. .. . . . . . . .. .. . ... .. . .. . . .. .. . . . ... ...... .. . . .. . ... . . . .... . . .. ... .. ... . . .... . . .. . .......... . . . .. ... . ........ . ..... ... ..... . ............. .. . . .... . ..... . . . .. ... .. . ............ . . . . .... .. .................. . . ... . . ... ... ... . . . . ........ .. ... . .. .... ... ........ ... . ... .. ... ..... .. . .... . .. .. .... ... ........ ..... . .... . .... . .. ..... .... .. .. . ... .. ... .. . ... . . ... . . .. . . . ........ .... . .. . .
lowQualScore : 0 4 1111111 9 4 222 1 99 4 4 9 4 4 4 888 11111 888888 4 6 888 4 222 888 00 0 0 0000 0 666666666 4 4 4 4 99999 333 4 00 0 0 6 0 0 0 33 7 2 3 99 44 4 0 4 0 1 0 22 99 0 888 99 0 44 3 9 11 00 0 4 4 666 777777 99 1 7 11 7 000 7 7 7 2222 7 2 99 777 99 777 1 0 1111 7 7 99 7 0000000000 7 7 7 66 000 7 77777777 3 00000 000 11111 7 9999999999999 33 7 7 6666 0 55555 0 0 0 88 111 99 2 666666666666 7 7 9 0 9999 99 666666666666666666 7 7 000 0 0 888 999 888 0 0 5 2 88888888 11 888 4 11 3333 888 11111111 111 4 888 99 888 55555 22 4 4444 4 99 55 1111 777 11111111 66666 8 4444 4 4444 9 66 00000 8888 11 11 4 888 99 888 55 4 111 7 0 000 0 0 66 0 9 7 77777777 5555 0 55 0 3
consensus : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA-GT-TAACTAG-TA--NN-AATG---ACGTC-A--TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AACTC-TTGTCNATTTATG-CACNTT--TNTT---AG--C-AAA-AACATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TG-T-TTT----AT-CTTTAAAT--TAC---AACT--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-T---TTTT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT--T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAAT-G-AAA-CAGG-A-CTCAG--ATTTTTT------------TTTCAG-AAATGACAAATGA-GTANTANATG-TTT--TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTC-A--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACATAAGTGGATT---TT--T---ATCT-----AAAG-GAA-T----G-GCTCT--GTTAC--A-CATG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACACCCA--TACA--TT--CA-AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CNATT----TTG-ATGC--TT-ACAGAGAATGGCT
Reference ( family-4150 ) : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA-GT-TAATTAG-TA--NA-AATG---ACGTC-A--TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAN-TTTTACAAAGGGC-AAT-AACTC-TTGTCNATTTATG-CACNTT--TNTT---AG--C-AAN-AACATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TG-T-TTT----AT-CTTTAAAT--TAC---AACT--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-T---TTTT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT--T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAAT-G-AA--CAGG-A-CTCAG--ATTTTTT------------TTTCAG-AAATGACAAATGA-TTANTANATG-TTT-TTTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTC-A--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACATAAGTNGATT---TT--T---ATCT-----AAAG-GAA-T----G-GCTCT--GTTAC--AGCATG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACACCCAT-TACA--TT--CA-AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CTATT----TTG-ATGC--TT-ACAGAGAATNGCT
gi|1 : CAATGTT--ATTATTTA-T-----ATTT-ACA---TTTATTTTGTA-TTTT-GTTT-T-TCTAA-GT---TAA-----CACTGAAATTTG-ACTT---GTATAACAC---T---TTT--AAA-TATT-TA----TTTT--TG---A----CAATTCTA-GTCTAACTAG-TA--AA-ATTG---ACGTC-A--TTGGT-CAAA-CTGAT-GATG-TC-ATT-GTATTAAT-TTTAT-CAATTAT-TTTTACAAAGGGC-AATAAACTCTTTGTAATTTTATGTCATTTTAACCTT---TGCCC-AAT-TTCATAA-TTTCAAACTAATCGA-TTTATTT-C-CGTAATCAATAAACA---CT--T--TTTTTATT-TTGATATTATTTA---AATGAAAA-TG-TCTTT----AT-C--TGGATGGTGG---ACGTGGGATCAGCTT--ACTGCG-GAAAT-AGCATGCTGG-TGGT--T-T---TTTT-AATTTTG-CATC-GTGAA---AATG-GTCATTTTTAGAATTTT--C--AA---TGGGTTT-AAAGATCAGATG--------A-C--CA-GC-C-A----TT-AAGATAATTGATGATGAAAT-G-AAATTAGGCA-CTCAG--A--TTTT------------TTTCAG-AAATGACAAATG---TCGTATA----------TG--TTTTATA-TTGTTCCAATTTCACACAAA-T-TC---ATGA--ATA---ATTAGATAC-C-CTAGCATC-AT-A---CTGATA--AC---C-AAATGC--AAAACTCCTA----TTGATCT--C--A--ACAAACGT-GATT---TTAAT---ATTA-----AAAGCGAA-GAGGAG-GCTCTCCCTTACCAAGGTCG--ACAACTGAAATTCGA--GT-TACACTCTGTG-T----CAAAA--TAA--CCGACGCCGGC-CATA--TCAGCATAGTT-AT--ATAT---AGTAATA-TT
gi|10 : gttgaatagtagatgataagtttgtattatcagttcttcatggcaaagatcctaaatcgtgtacaatttgctttatataaatttagaacgctccagaaaatattgtttgctagtgatgtaaactgtgctggaaattttactcacAAAACTTTAAAAGATACTGTGCAA-ATT-TATCATTTA-T---G-AATTTA-A---TTTTTTG-GTA-TCTT-G--T-T-TCAAA-GTCCGAGT-----TA------TTTGCATTT---ATA-AACACTTTT---TTT--AAA-AACAGTAGTTTTTTT-GCA---gtaggtgtctggggatagtgattcgagttgtacatgacagtgtcaaccgccatatcacgttgagtgcttagcggggaggtgc
gi|11 : tactacttatcggtacattaaagctgggttttttaatttttttttaaaagttgcctcaagccatataggctagaattctaaaatagtttcacaagacatgtctatcattatattacaaaaaaagttcagttatgatattgtaggacaacgtttaaaaaaattcatgaatcaaccacagaagtacttcagatttctctgataaattgtatagatttcattactatttcaaaagtagaacttaggctatcatataccaaatcgtgtctttcgcaattgattattcattctattctcccaacatatttaggatatatgaagaggaaacatgcatagaaggcaagttgcttatacaaaatag-ATGTTGT----TATT-AAATATTTA-TGGAT-AGCT-A-A---TTTTTTTTGTA-TTTT-ATTTGT-TTTAA-GT---AAAAAATTTA------TATGCATTTTAAACC-AACAC---TCCCTCTGGAGA-AATA-TAACAATTTT-GCA--------CA-TTCTA-GT-TAACTAG-TAACAA-AGTG---ACGTC-A--TTGAT-C-AGACTGATGGATG-TCGATCTGTTTTGT
gi|12 : tgagatgttcataaacaacagaatttggggcaatcactgattagaatacttatttaagatatattttcttacagtgcatgtatgctatttgaaccacacgagtcctaattaaaatctgcatattatgcttatataaaagtttagaaacgaatgaatattcaaaatactttggcaagggaatggAACGTCGAAA--TATTGTGCAGTGTTGTATTATT---------AATT-A-A---ATTGTT--GTA-TTTTTGGTC-TCTTTAA-GG---AAC-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-GA-A-TA----TTTC-------A----CA-TTCTA-GT-TAATTTA-TA--TT-AATG---ACGTCCA--TTGAT-CAAA-CTGATTGATG-TC-ATC-GTTT-ATTGTTAA---AAT--G-CTTAACAAAGGGC-AAT-AACTC-TTGTCTA-TTATG-CA-TTT--ACTT---AG--C-AAA-TACATGTTTTTC-------------TTATTC-T-TTAAATTA
gi|14 : tacacccacatactcagtaattatttctgacaggaatttaaaataattccttctttcacaggtatcttacagttgttgagataattcgaactgagcagttgttgtaaaatatagacTTTAGT---T-AATT-A-AA--TTTGTT--ATA-TTTT-GGGT-T-TTTAA-GT---AAA-----TA------TTAGCATTT---ATA-AACAC---T---TTT--CAA-AATA-TA----TTTT-GCA--------CA-TTCTA-GT-TAATTAG-TA--TC-AATG---ACGTC-A--TTGAT-CAAA-CTGAT-GATG-TA-ATC-GTTT-ATTGTTAA--AAATTAGATTTTACAAAAGGC-AAT-AACTC-TTATCAATTTATG-TACATT--TATT---AG--C-ATA-AACATGATTTTCAAG-T--TCGA-TTTATTTCC-TTAAATCA---AATAT--GAATT--TTTTTATT-TTTGCA-TATTTA---AATGAAc
gi|15 : -TTTTTCACTGATG-CACATT--TATT---GG--C-AAA-AACCTAATTTTTAAACT--TCGA-TTTATTTCC-TTAAATCA---AATATGACA--T--TTTTTATT-TTTATA-TATTGA---AATGGAAA-TGTT-TTT----AT-CTTTAAAT--TACAATAATT--GAAA-AC-TTCACT--G-GGAAT-AGT-TGC--A-TA----A-TTTGTTTT-AA-GTTG-CGT--GTGAA---AATA-GTA--------AATTTTTGT--AA---TGG---T-AAA-ATCAAATA--A-----A-C--CT-GC-C-A----TT-AGAA-----AATGAATAAAT-GAAA--CAGA-A-CTCAG--AGTTTTG------------TT
gi|16 : t----TT-AGAA-----AAT-AATAAAT-A-AAA-CAGG-AACTTAG--ATTTTTTTTTTTTTTTTTTTTTTTG-AATTGAC-AATGA-GTAATATA-G--------------TTATA-TT-TTCCA---TCACACAAA-T-TC---AGTA--ATA---ATTAAATAC-T-TTACCGTC-A--AAACCTGATA--AC---ATAAGTGC--AAATCTCCTAGAGTT---TTT--CA-A--ACATAATATTATTTTCTT--T---ATCT-----AAAA-GAC-T----G-GCTCT--GT-----ATCATGGAACTA--------CGT--G--GATGT-------T----C-AA---------------------ACA--TT--CA-AA-T-AT--ATAT---AGTAATA-ATCT
gi|17 : -A--A---TTGATATAACGTAA-AGGTGC--AAAACTCCTAT---T---TTT--C--A--ACATAA
gi|17 : aATG--GCA---------CGA---T-GATAT----TGGT----C-AAA--TAA--CTTACATCCAT--ACA--TT--CA-AG---AT-GA-GC---AGTAATA-GTCTC-TG-AAAA-ATTTC-ATGAAG-A-TT-GGTTGACATG-A-C-TGTCCAACG-----CGATT----TTGAATGC--TT-ACAGA-AATGGCTagtgagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagatggcacgatgatattggtcaaataacttacatccatacattcaagatgagcagtaatagtctctgaaaaatttcatgaagattggttgacatgactgtccaacgcgattttgaatgcttacagaaatggctctt
gi|18 : aaattgatataacgtaaaggtgcaaaactcctatttttcaacataaagtgagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CCATCATCAA--A---CTAATA--AC---A-AAGTGC--AAAACTCCTAT---T---TTT--C--ACCACATAAG--GAAT---TT--TATAATCT-----AAA--GAA-T----G-GTTCT--GTTA-----CATG--ACAA--------CGA--GT-GGTAT----TG-T----CAAAA--TAAC-C--ACACCCA--TACA--TT--CA-AG-TAAT-GATAT---AGTAATA-TTCTC-TG---AAAATTTC-ATGAAG-ATTT-GG-TGACATG-A-CTT-TCCAA-------CGATT----TTG-ATGC--TT-ACAGAGAATGGCTctt
gi|2 : AAAA-ATATTGTGCAGTGTT-TGTTATTTA-T---TTAATT-A-A---ATTGTT--GTA-TTT--GGTC-T-CTTAA-GT---AAA-----TA------TCTGCA--T---ATA-AACAC---T---TTTTAAAA-AATA-TAT---TTTT-GC----A----CA-TTCTA-GT-TAATTAG-TA--TT-AATG---ACGTC-G--TTGAT-C-AAACTGAT-GACG-TCAATC-G-TTTATTGTTAA--AAAGTAG-CTTTACAAAGGGCAAATAAACTC-TTGTCTATCTATG-CACCAT--TTAC---AA--CAAAA-AACATA--TTTC--ACT--TCGA--TTATTT-C-
gi|20 : tttgccaccccccctccacttggcgcagtgtatctattactgttattggggggcttagttacagttatttagatgtttgccccctcaccccccctaatttaaagaacagtcctaaacgctatgtttgtttggggggggggttaaggttttgttataggcctagaatcttaaaacagttttcatcaggatctattacactacatatgtatgattattaacaaataaaagttatgttataatttttggaaaactttttcataatcaaggactagaaatttactgtccaatttctcaataaattgtatagatttattaacattttccaaacaatgtaaccttagcctacatcataccaaatcccgttcttacgtatgaattttcattcgatttttttatacacacacaattgcttcttaattctatagatacacacacatatactacacacattctcagtatttgatttctgacagaatttaagaaatgatttcctctttcataagtatcttaacagttgtttagaaaattcgaaaatagccagttgctgtttataatatacaaccgttg-TTAAAT--AT-GACAT---A--T--CTG--ATT-TTCGTA-TTTTTG---AATGAAAAATG-T-T-------------AAAT--CAC---AACT--GACA-GCTT-CACT--G-AAGAT-AGC-TGC--A-CA----C-C---TTTT-------G-TAT--GTGAA---AATA-GTC--------AATTTTG-T--AA---TGG-----AAA-ATCAAATA--T-----ATA--CC-CCGC-A----TT-AAGA-----ATTGAATAAAT-GAAA--GAGT-A-CTCAG--ATTTTTT------------TT-----------CATCT-A-TTAGTA-ACG--TT-TGTTGCCTTTTACA-TT-CTCTA---Tcga
gi|21 : TT--AAATCATA-TA----TTTTTGCA---ATA--CA-TTCTG-CT-TT-TTGG-TA--AATAATATAAACCTC-ACATTGAT----AATTCTC-GATG-T-------TTACATTGATTAG-AAACTGA-TTT-ACAAAGG-C-A-T-AACTC-TTGTCGATATATG-CATATA--TATT---AG--C-ACA-AACATGATTTTTAAACT--TCGA--TCATTT-C-CT
gi|23 : taaaaattaccctgtcgaatttaAT-CAAA-CTGAT-GATG-TC-ATT-GTTT-ATTGC-CAT-AAATAAG-TTTTACAAAGGGC-AAT-AACTC-TTGTCAATTTATG-CACTTT--TTTTAAAAG--C-AAA-AACATGATTTTC-AACT--TCGA-TTta
gi|24 : A-T----G-GCTCT--GTTAC----CATG--ACAA--------CGA--GT-GATAT----TG-TTCAAC-AAAT-TAC--C--ACACCC---TACATCTT--CA-AG-T-AT-CATAT---------------------GAAAATTTC-ATGACGAA-TT-TG-TGa
gi|25 : AA-T-TC---AGAA--TTA---ATTAGATAC-C-CTA-CATC-AATA---CTGATA--AC---A-AAGTGC---AAACTCCTA----T---TTT--TCAA--ACATAAGTGAATT---TT--TA--ATCT-----AAAG-GAA-C----G-ccgttccttt
gi|27 : ATA-CTCCC-TACAAAAAGTTTA-ATCCAA-A-TC-GG-TGACATG-T-CATTTCCAACATTTGCCCATTGTGTTTG-ATGC--TT-ACAGAGAATGACT
gi|29 : CTC-TG-AAAA--TTTC-ATTAAG-A-TT-GA-TGACATATA-ATT-TCCAAC------CTTCT----TTG-ATGC--TG-AGACAGAATGTCTct
gi|3 : AATTAGAACGTCAAAA-ATATTGTGCAGTGTG-TATCATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---ACA-----TA------TTTGCATTT---ATG-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCACATATGCCCA-TTCTA-GT-TAACTAGGTA--AA-AATGG--ACGTC-AG-TTGATGCAAAACTGAT-GATGGTC-ATT-GTTTTATTGTTTATCAAATTAT-TTTTACAAAGGGC-AAT-AACTC-TTGTCAATT-ATG-CACTTT--TCTT---AG--C-AATCAGCATGATTTTCAAACT--TCGAGTTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTTGTA-TATTTA---AATGAAAA-TG-T-CTA----AT-CTTTAAAT--TAC---AACT--GAAC-GCTTTCACT--G-GGAAT-AGC-TG---A-TA----C-T---TTTT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AGTTTT--T--AA---TGG---TAAAA-ATCAAATT--T-----G-A--CA-GC-C-A----TT-AAAA-----AATGAAGAAAT-G-AA--TA-G-A-TTCAGA-ATTTTTT------------TTTCAGAAAATGACAAATGATTTAATAAATGTTTT-TTTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CTAGCATC-A--A---CTGATA--A----A-AAGTGC--AAAACT-CTA----T---TTT--C--A--ACATAAGTTGATT---TT--T---ATCT-----AAAG-GAA-T----G-GCTGT--GTTAC--AGCATG--ACAA--------CGA---T-GAT-T----TG-T----C-AAA--TAA--C--ACACCCATGTACA--TT--CA-AG-T-AT-CATAT---GGTAATA-TTTTC-TG-AAGAAGTTTC-ATGAAA-G-TTGGG-TGACATG-A-CTTGTCCAACT-----TTATT----TTG-ATGC--TT-ACAGAGAACTGCTctta
gi|30 : AAAATTTC-ATGAAG-T-TT-GG-TGACATT-A-CCTATGTAAC------TTATT----TTG-ATGC--TT-ACTGAGAAT
gi|32 : gACATG-A-CTTGTCCAAC------CGATT----TTG-ATGCATTT-ACAGAGAATGGCTgc
gi|4 : ATTACAACGTCAAAA-ATATTGTGCAGTGTT-TGTTATTTAGT---T-AATTAA-A---TTTG-TT-GTA-TTTT-GATA-T-CTTAA-GT---AAA-----TA------TCTGCA-TT---ATA-AACAC---T---TTT--AAA-AACA-TA----TTTT-GC----A----CA-TTCTA-GT-TAATTAG-TA--TT-AATG---ACGTC-G--TTGAT-C-AAACTGAT-GATG-TC-ATC-G-TTTATTGTTAA--AAATTAG-CTTTACAAAGGCC-AAT-AACTC-TTGTct
gi|5 : ggggcttgctcgacaattcactaacagaggatgttgtgccaccactccccccaattcttaaaaagacagtccttacggcctcatacggtttgggggctcgcttgattgtttattttttatatattaggacctagaaatactaaaccgcttctcaggattctatactagtacacatgatattatcatatttacaaacaataaagttatctcaacattgttggacaagaacttttatcaataggaatcaggactagaaacttatatgtacattattttcatactattatagattgtattactatttcctcacacacatgttacctaatcatactaaaagcgccagttctacgtatcgataattaatatcaatatcgcatttattcttcatacaccacaccacattctcagtaattatttctgacagaatccttctttcaccgctatcttacagttgttgagaaaaatcaaacatagcaagttgctgttaaaatAATTAGAACGTCAAAA-ATATT-TGCAGTTCT-TATTATTTA-T---T-AATT-A-ATTTTTTTTTT-GTATTTTT-GGTG-T-CTTAAGGT---AAA-----TA------T-TGC-TTT----TA-AACACT--T---TTT--AAA-AATA-TAT---TTTT-GCA------------TCTAGGT-TAACTAG-TA--AA-AATGAC-ACGTC-AT-TTGAT-C-AAACTGAT-GATG-TC-AT--G-TTTATTGTT-AT-CAATTAT-TTTTACAAAGGGC-AA
gi|6 : ggggtgccaagtacctctaaatatgcctatgattatgacatgttttgcatggtccaggttagaatattattgatataccttaatgtacgtagccatttaaaggttggatttttttaatatattttttttaagttgcctcaagccatttaggccttagaattctgaaacagttttcatcaggattctatacatatagtgttgggacaaacttttaaaaattatgaatcacgactaaaatttaagtccaatctctctctaatagattgtatactagactcataactaaatccaaacattgtagactttgctattataccaagttcccattcttcggcattaatcacagattgtattttgagcatgtttctaatagaatttgggaaatcactgtttagtaagtgtagttgcctttcagttgtaaggaaaacctctaaatagtgcaatttgcttatata-AGCATAATTTTTAAA-T--TCGA-TTTATTT-CCTTAAATGAA---ATAT--GA--TAGTTCTGATT-CTTTTA-TAATTA---AATAAAAA-GG-T-TTT----AT-CTTTAAAT--TAC---AATT--GACT-GC-TTCACT--T-GGAAA-GGT-TGC--A-TAAATTT-T---TTTT-AA-TTTG-TAT--GTGAA---AATA-ATC--------ATTTTT--TTAAA---TGG---T--AA-ATTGAATGTTT-----A-A--CCTGC-C-ATTATTT-AAAA-----GATGAAGAAATAA-AA--CAGG---CTCAG--A-TTTCT------------TTTCAG-AATTGAC-AATGA-GTATTATATA---------------TATG-TT-TTGCA---TCACTCACA-T-TT---AGTA--AGA---ATTAAATAC-T-CTAGCGTC-A--AT--CTGAGA--AC---A-GAGTGG--AAAACTCGTA----T---TTTA-C--C--ACATCAATGAATT---TT--T---AGCC-----AAAA-GAATT----A-GCCCT--GTT-C----CACG---CAA----------------GATAT----TG-C----C-AAATTTAC--C--AAACTCA--TACA--TC--TG-AA-T-AT-GATATTAAAGTAATA-ATCGT-TG---AAAATTTC-ATGAAG-A-TT-GG-TGACATC-A-CCTATGTAAC------CT-----------ATGC--TT-ACTGAGAATG
gi|7 : AATTAGAACGTCAAAA-ATATTGTGCAGTTTT-TATTATTCA-T---T-AATatctttaaaaatgtttaagatacacgga
gi|8 : gaggtgccaagtacctctaaatatgccattgattatgaccatgttttgcatgtccaggttagatattattgatttaccttacatgacgtacatttaaagagttgtttttttttaaatatattttttttttaaggtttgcctcaagccattaggccctagaattctaaaccaaaaagttttttcaattttcgggggatttttcatatacatatattacaaaataaatggtgtggaccaaacttttaaaaaatcataaatcacgacttaaaatttaagtcatatcttctctaatagcattgtatatatagacttcatttactaaatttcaaacatgtagactttggctatgataccaaagtcccattcttgcgcatatcatatatttgctattttgagatgtttctaacagaatttgggaaatacctgtttagatagtagtttcttttcaattacagggaaatcctaaaagtgcatttgcttatataAT--TAC---AACT--GTAC-AGCTTCACTT-G-GGAAT-AGC--GC--A-TA----C-T---TTTTTAA-TTTG-CATTAGTGAATAAAATACGTC--------AATTTT--T--AAAATTGG---T-AAA--TCAAAAA--TTGTGGA-C--CA-GC-C-A----TT-AAAAT----AAAGAAGAA-T-G-AAA-TAGG-A-TTTAG--ATTTTTT------------CAAGAA-AAATGACAAAT-A-GTAATAC-TG-TTTATTTTaa
gi|8 : aactAAT-A-TTACGA-ATA-TTG-ATTTT--TTTTAAACTT-TTACA---TCACACAAAAT-TC---AGAA--TTA---AT-AGATAC-CGCTAGCATC-A--AAA-CTGATA--AC---A-AAGTGC--AAA-CTCCTA----T---TTTTTC--A--ACATAAGTGAATT---TT--TT--ATCT-----AAAG--AA-T----GCGTTCT--GTAAC----CATG--ACAA--------CGAAGGT-GATAT----TG-T----C-AAA--CAAACC--ACACCCAT--ACA--TT--CA-AG-T-ATCAATAT---AGTAATAATTTTCATG-AAAA--TTTC-ATGAAG------------CAT------TGTCCAAC------GGATT----TTG-ATGC--TTGACAGAGAAT-GCTcctaatacacctcgttacccgaagttcccgatcccgtgtcctaatattacgaatattgattttttttaaacttttacatcacacaaaattcagaattaatagataccgctagcatcaaaactgataacaaagtgcaaactcctattttttcaacataagtgaattttttatctaaagaatgcgttctgtaaccatgacaacgaaggtgatattgtcaaacaaaccacacccatacattcaagtatcaatatagtaataattttcatgaaaatttcatgaagcattgtccaacggattttgatgcttgacagagaatgctct
gi|9 : aactattacaactgtacagcttcacttgggaatagcgcatacttttttaatttgcattagtgaataaaatacgtcaatttttaaaattggtaaatcaaaaattgtggaccagccattaaaataaagaagaatgaaataggatttagattttttcaagaaaaatgacaaatagtaatactgtttattttcctaatacacctcgttacccgaagttcccgatcccgtgtcctCAAT-AAC-T--C---T--TGTCTATTATGCATT-TACTTAGCAAAT--ACA-TG-T-TTTTCTTATTCTTTAAAT--TACA--AACT--GACA-GC--TCACC--ATGGAATAAGC-TGC--ATTA----CGT---TTTT-AA-TTTGCCAT--GTGAA---AG-A-GCC--------------------------------AAA-ATCAGGTA--T-----A-ACCCA-GT-CAA----TTAAAAA-----AATGAATAGAT-G-AAACCAGG-A-CTAAGATATTTTTT------------TTTCAG-AAATGAC-AATGA-GT--TAAATG-------TTG------ATA--T-TTCAA---TCACTTAAG-TGTCCCTAGAACGGTAATTATTAGATATAC-CTAGC-TC----A---TTGATA--AC---A-AAGTGCAAAAAACTCCTT----T---TTT--T--C--ACATAAGTGAA-----TT--T---ATCTAAAAGAAAA-GAA-T----G-TATCT--GTTAC----CAGG----AA--------CGA--GTAGA-------TG-T----C-CAA--TAA--CT-ACATCCA--TACA--TT--CA-AG-TAAT-GAT-T---AGTAATA-TTCTC-TG---AAAATTTCAATGAAG-A-TT-GG-TGACATG-ACCTTGTCCAAC--------GAT----TTG-ATGC--TT-ACAGAGAATGGCTct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GATGTTTGCCCCACCCCCCCCTAGTTTAAAGCCAGTCCTACGCCTATGTTTGTTTGGGGGGGGGTTATTTTTTATAGGCCTAGAATCTAAACAGTTTCCATCAGGTTCTATTACATACTATGTATTATATATTACAAAATAAAAAGTTATGTTATATTTTGTTGGACATAACTTTTAATCATGAATCAGGACTAGAATTTTATGTCCCAGATTTTCATCTAATAAATTGTATAGATTTTATTACTAATTTTTCAAAGCATGTAACCTTTAGTCCCTACATACCAAAATCCCGTT
Unaligned ( gi|19 ): GGGGTGCCAAGTACTCTAAATATGCCTATGATTATGACCATATGCAGGTGATTTACCTACATATACGTACATTTAAAGGTTTTTTTTTTTAAATATATTTTTTTTAAAGTTTGCCTCAAGCCATTAGGCTAGAAATTCTAAACAGTTTCATCAGGATCTATAAATATACAATGTATATTACAAAATAAAAGTGTTGGACAAACTTCTTAAAAAATCATAAAATCACGACTAAAGTC
Unaligned ( gi|22 ): TTTGCCCCCCTCCCCCTCCACTTTTGGCGAATGTTCTAATACTTTTTTTGTCTTGTCATCACATTACTTAGATGTTTGTCCCCCCCATTTAAAGTCAGTCAGGGACTACGCCTATGTTAGGGGGAGGGGGGTTGTTTATTTTTTATTAGGCCTAGA
Unaligned ( gi|26 ): GGGGTGCCACTACCTCTAAATATAGCCGTATACGTATTTTATGACATGTTTTGCTCTGAATTAGAATATTATTAGTTTACCTTTACGATT
Unaligned ( gi|28 ): TAGAATTTGGGAAATCACTGTTTAGATAGTGTAGTTGCCTTTCAGTTGTAAGGAAAACTTAAATAGTGCAATT
Unaligned ( gi|31 ): CCACCCTCTAAATATACCTATGATTATGACCTTGTTTTGTCTAGATTAGATTGATTGAT
Alignments
lowQualScore : 1111111 111 22 11111 111111 111 11 2222 33333333 111111 11 1 1 11 11 222222 111 2222 111 111 1111 222222 111 11 111 22222222 1111 111 11111 3333333333333 1111 11111 1 11 222222222222 1 6666666666666666666666 111 222222 1111 11111111 111111 1111 11111 22 11111111 11111 11 22222 11 111 111111
lowQualScore : 5 4 3333333 4 4 666 0 44 4 4 2 4 4 4 777 11111 222222 5 9999 4 222 777 11 4 4 5555 4 55555555 4 777777 4 4 22 66 00 4 8 4 3 0 8 4 8 66 5 7 5 99 4 4 5 5 4 1 0 5 11 66 1 888 5 55 66 7 3 66 99 5 8 1 44 111111 77 0 5 33 5 000 6 6 0000 6 3 77 5 000 77 999 333 5555 5 5 77 5 333333 000 5 5 5 33 000 5 00000000 0 8888 000 77777 5 1111111111111 77 5 5 0000 5 77777 1 0 777 11 6 555555555555 66 1 5 1 5 7 5 77 7777777777777777777777 5 5 000 5 5 888 777 888 5 5 2 6 444444 66 777 4 66 8888 777 77777777 4 77 444444 7777 22222 77 4 9999 4 66 0 66 9999 66 66666666 33333 0 9999 4 9999 8 00 00000 777 66 66 9999 999 22 777 66 4 555 5 4 888 4 4 55 4 3 5 999999 1 8888 4 55 4
lowQualScore : . . ....... . . ... . .. . . . . . . ... ..... ...... . .... . ... ... .. . . .... . ........ . ...... . . .. .. .. . . . . . . . . .. . . . .. . . . . . . . . .. .. . ... . .. .. . . .. .. . . . .. ...... .. . . .. . ... . . .... . . .. . ... .. ... ... .... . . .. . ...... ... . . . .. ... . ........ . .... ... ..... . ............. .. . . .... . ..... . . ... .. . ............ .. . . . . . . .. ...................... . . ... . . ... ... ... . . . . ...... .. ... . .. .... ... ........ . .. ...... .... ..... .. . .... . .. . .. .... .. ........ ..... . .... . .... . .. ..... ... .. .. .... ... .. ... .. . ... . . ... . . .. . . . ...... . .... . .. .
lowQualScore : 0 4 1111111 4 4 777 1 33 4 4 9 4 4 4 888 11111 888888 4 7777 4 222 888 00 0 0 0000 0 33333333 4 222222 4 4 00 11 66 4 9 0 0 6 0 0 0 33 7 2 3 99 4 4 0 0 4 0 1 0 22 99 0 888 0 22 11 3 9 11 00 0 9 4 11 777777 99 1 7 11 7 000 7 7 8888 7 2 99 7 000 99 777 666 1111 7 7 99 7 999999 000 7 7 7 66 000 7 77777777 3 0000 000 11111 7 9999999999999 33 7 7 6666 0 55555 0 0 111 99 2 666666666666 99 7 7 9 4 9 0 88 4444444444444444444444 7 7 000 0 0 888 999 888 0 0 5 2 333333 11 888 4 11 3333 888 11111111 4 00 444444 9999 55555 22 4 4444 4 99 1 66 4444 11 11111111 66666 8 4444 4 4444 9 66 00000 888 11 11 4444 888 99 888 55 4 111 7 0 000 0 0 66 0 9 7 555555 0 5555 0 55 0
consensus : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AAGTGAATT------TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
Reference ( family-4150 ) : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AAGTGGATT------TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CNATT----TTG-ATGC--TT-ACAGAGAATGGCT
gi|1 : CAATGTT--ATTATTTA-T-----ATTT-ACA---TTTATTTTGTA-TTTT-GTTT-T-TCTAA-GT---TAA-----CACTGAAATTTG-ACTT---GTATAACAC---T---TTT--AAA-TATT-TA----TTTT--TG---A----CAATTCTA------GTCTAACTAG-TAAAAT--TG--ACGTC-A-TTGGT-CAAA-CTGAT-GATG-TC-ATT-GTATTAAT-TTTAT-CAATTAT-TTTTACAAAGGGC-AAT-AAACTCTTTGTAATTTTATGTCATTTTAACCTT---TGC-CC-AATTTCATAATTT-CAAACTAATCGA-TTTATTT-C-CGTAATCAATAAACA---CT--T--TTTTTATT-TTGATATTATTTA---AATGAAAA-TGTCTTT----AT-C--TGGATGGTGG-ACG---TGGGATCAGCTT--ACTGCG-GAAAT-AGCATGCTGG-TGGT--T-TTT---TT-AATTTTG-CATC-GTGAA---AATG-GTCATTTTTAGAATTTT-C--AA---TGGGTTT-AAAGATCAGATG--------A-C--CA-GC-C-A----TT-AAGATAATTGATGATGAAATGAAATTAGGCA-CTCAG--A--TTTT------------TT--TCAG-AAATGACAAAT---GTCGTAT--A------------TG--TTTTATA-TTGTTCCAATTTCACACAAA-T-TC---ATGA--ATA---ATTAGATAC-C-CTAGCATCAT-A---CTGATA--AC---C-AAATGC--AAAACTCCTA----TTGATCT--C--A--ACAA-ACGT-GATT------TTAAT-ATTA-----AAAGCGAA-GAGGAG-GCTCTCCCTTAC--CAAGGTCG--ACAACTGAAATTCGA--GT-TACACTCTGTG-T----CAAAA--TAA--CCGACGCCGGCCA--TA-----TCAGCATAGTT-AT--ATAT---AGTAATA-TT
gi|10 : gttgaatagtagatgataagtttgtattatcagttcttcatggcaaagatcctaaatcgtgtacaatttgctttatataaatttagaacgctccagaaaatattgtttgctagtgatgtaaactgtgctggaaattttactcacAAAACTTTAAAAGATACTGTGCAA-ATT-TATCATTTA-T---G-AATTTA-A---TTTTTTG-GTA-TCTT-G--T-T-TCAAA-GTCCGAGT-----TA------TTTGCATTT---ATA-AACACTTTT---TTT--AAA-AACAGTAGTTTTTTT-GCA---gtaggtgtctggggatagtgattcgagttgtacatgacagtgtcaaccgccatatcacgttgagtgcttagcggggaggtgc
gi|11 : tactacttatcggtacattaaagctgggttttttaatttttttttaaaagttgcctcaagccatataggctagaattctaaaatagtttcacaagacatgtctatcattatattacaaaaaaagttcagttatgatattgtaggacaacgtttaaaaaaattcatgaatcaaccacagaagtacttcagatttctctgataaattgtatagatttcattactatttcaaaagtagaacttaggctatcatataccaaatcgtgtctttcgcaattgattattcattctattctcccaacatatttaggatatatgaagaggaaacatgcatagaaggcaagttgcttatacaaaatag-ATGTTGT----TATT-AAATATTTA-TGGAT-AGCT-A-A---TTTTTTTTGTA-TTTT-ATTTGT-TTTAA-GT---AAAAAATTTA------TATGCATTTTAAACC-AACAC---TCCCTCTGGAGA-AATA-TAACAATTTT-GCA--------CA-TTCTA------GT-TAACTAG-TAACAAAGTG--ACGTC-A-TTGAT-C-AGACTGATGGATG-TCGATCTGTTTTGT
gi|12 : tgagatgttcataaacaacagaatttggggcaatcactgattagaatacttatttaagatatattttcttacagtgcatgtatgctatttgaaccacacgagtcctaattaaaatctgcatattatgcttatataaaagtttagaaacgaatgaatattcaaaatactttggcaagggaatggAACGTCGAAA--TATTGTGCAGTGTTGTATTATT---------AATT-A-A---ATTGTT--GTA-TTTTTGGTC-TCTTTAA-GG---AAC-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-GA-A-TA----TTTC-------A----CA-TTCTA------GT-TAATTTA-TATTAA--TG--ACGTCCA-TTGAT-CAAA-CTGATTGATG-TC-ATC-GTTT-ATTGTTAA---AAT--G-CTTAACAAAGGGC-AAT-AA-CTCTT-GTCTA-TTATG-CA-TTT--ACTT---AGC-AA-ATA--CATGTTTTTC-------------TTATTC-T-TTAAATTA
gi|14 : tacacccacatactcagtaattatttctgacaggaatttaaaataattccttctttcacaggtatcttacagttgttgagataattcgaactgagcagttgttgtaaaatatagacTTTAGT---T-AATT-A-AA--TTTGTT--ATA-TTTT-GGGT-T-TTTAA-GT---AAA-----TA------TTAGCATTT---ATA-AACAC---T---TTT--CAA-AATA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTAG-TATCAA--TG--ACGTC-A-TTGAT-CAAA-CTGAT-GATG-TA-ATC-GTTT-ATTGTTAA--AAATTAGATTTTACAAAAGGC-AAT-AA-CTCTT-ATCAATTTATG-TACATT--TATT---AGC-AT-AAA--CATGATTTTCAAG-T--TCGA-TTTATTTCC-TTAAATCA---AATAT--GAATT--TTTTTATT-TTTGCA-TATTTA---AATGAAc
gi|15 : TT-TTTCACTGATG-CACATT--TATT---GGC-AA-AAA--CCTAATTTTTAAACT--TCGA-TTTATTT-CCTTAAATCAA---ATATGACA--T--TTTTTATT-TTTATA-TATTGA---AATGGAAA-TGT-TTTT---AT-CTTTAAAT--TAC-AATAATT--GAAA-ACTT-CACT--G-GGAAT-AGT-TGC--A-TA----A-TTTGTTTT-AA-GTTG-CGT--GTGAA---AATA-GTA--------AATTTT-TGTAA---TGG---T-AAA-ATCAAATA--A-----A-C--CT-GC-C-A----TT-AGAA-----AATGAATAAATGAAA-CAGA-A-CTCAG--AGTTTTG------------TT--
gi|16 : t----TT-AGAA-----AAT-AATAAATAAAA-CAGG-AACTTAG--ATTTTTTTTTTTTTTTTTTTT--TTTG-AATTGAC-AATGA-GTAATAT--A-G----------------TTATA-TT-TTCCA---TCACACAAA-T-TC---AGTA--ATA---ATTAAATAC-T-TTACCGTCA--AAACCTGATA--AC---ATAAGTGC--AAATCTCCTAGAGTT---TTT--CA-A--ACAT-AA-T--ATTATTTTCTT--T-ATCT-----AAAA-GAC-T----G-GCTCT--G-TAT--CA----TGGAACTA--------CGT--G--GATGT-------T----C-AA------------------------ACA--TTCA----AA-T-AT--ATAT---AGTAATA-ATCT
gi|17 : A--A---TTGATATAACGTAA-AGGTGC--AAAACTCCTAT---T---TTT--C--A--ACATAAAGTG
gi|17 : aA----TG--GCA---------CGA---T-GATAT----TGGT----C-AAA--TAA--CTTACAT---CCA--TACA--TTCA----AG---AT-GA-GC---AGTAATA-GTCTC-TG-AAAA-ATTTC-ATGAAG-A-TT-GGTTGACATG-A-C-TGTCCAACG-----CGATT----TTGAATGC--TT-ACAGA-AATGGCTagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagatggcacgatgatattggtcaaataacttacatccatacattcaagatgagcagtaatagtctctgaaaaatttcatgaagattggttgacatgactgtccaacgcgattttgaatgcttacagaaatggctctt
gi|18 : aaattgatataacgtaaaggtgcaaaactcctatttttcaacataaagtgagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CCATCATCA--AA--CTAATA--AC---A-AAGTGC--AAAACTCCTAT---T---TTT--C--ACCACAT-AAG-GAATT------TTA-TAATCT-----AAA--GAA-T----G-GTTCT--GTT--A-CA----TG--ACAA--------CGA--GT-GGTAT----TG-T----CAAAA--TAAC-C--ACAC---CCA--TACA--TTCA----AG-TAAT-GATAT---AGTAATA-TTCTC-TG---AAAATTTC-ATGAAG-ATTT-GG-TGACATG-A-CTT-TCCAA-------CGATT----TTG-ATGC--TT-ACAGAGAATGGCTctt
gi|2 : AAAA-ATATTGTGCAGTGTT-TGTTATTTA-T---TTAATT-A-A---ATTGTT--GTA-TTT--GGTC-T-CTTAA-GT---AAA-----TA------TCTGCA--T---ATA-AACAC---T---TTTTAAAA-AATA-TAT---TTTT-GC----A----CA-TTCTA------GT-TAATTAG-TATTAA--TG--ACGTC-G-TTGAT-C-AAACTGAT-GACG-TCAATC-G-TTTATTGTTAA--AAAGTAG-CTTTACAAAGGGCAAATAAA-CTCTT-GTCTATCTATG-CACCAT--TTAC---AACAAA-AAA--CATA--TTTC--ACT--TCGA--TTATTT-C-
gi|20 : tttgccaccccccctccacttggcgcagtgtatctattactgttattggggggcttagttacagttatttagatgtttgccccctcaccccccctaatttaaagaacagtcctaaacgctatgtttgtttggggggggggttaaggttttgttataggcctagaatcttaaaacagttttcatcaggatctattacactacatatgtatgattattaacaaataaaagttatgttataatttttggaaaactttttcataatcaaggactagaaatttactgtccaatttctcaataaattgtatagatttattaacattttccaaacaatgtaaccttagcctacatcataccaaatcccgttcttacgtatgaattttcattcgatttttttatacacacacaattgcttcttaattctatagatacacacacatatactacacacattctcagtatttgatttctgacagaatttaagaaatgatttcctctttcataagtatcttaacagttgtttagaaaattcgaaaatagccagttgctgtttataatatacaaccgttg-TTAAAT--AT-GACAT---A--T--CTG--ATT-TTCGTA-TTTTTG---AATGAAAAATGT-T-------------AAAT--CAC-AAC---T--GACA-GCTT-CACT--G-AAGAT-AGC-TGC--A-CA----C-CTT---TT-------G-TAT--GTGAA---AATA-GTC--------AATTTTGT--AA---TGG-----AAA-ATCAAATA--T-----ATA--CC-CCGC-A----TT-AAGA-----ATTGAATAAATGAAA-GAGT-A-CTCAG--ATTTTTT------------TTCATC------T-----ATTA-GTA------ACG--TT--T-GTTGCCTTTTACA-TT-CTCTA---Tcga
gi|21 : TT--AAATCATA-TA----TTTTTGCA---ATA--CA-TTCTGCTTTTTGG-TAAATAA-TATAAA--CC--TCA-C-A-TTGAT----AATTCTC-GATG-T-------TTACATTGATTAG-AAACT-G-ATTTACAAAGG-C-A-T-AA-CTCTT-GTCGATATATG-CATATA--TATT---AGC-AC-AAA--CATGATTTTTAAACT--TCGA--TCATTT-C-CT
gi|23 : taaaaattaccctgtcgaatttaAT-CAAA-CTGAT-GATG-TC-ATT-GTTT-ATTGC-CAT-AAATAAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATTTATG-CACTTT--TTTTAAAAGC-AA-AAA--CATGATTTTC-AACT--TCGA-TTta
gi|24 : A-T----G-GCTCT--GTTAC--CA----TG--ACAA--------CGA--GT-GATAT----TG-TTCAAC-AAAT-TAC--C--ACAC---CC---TACATCTTCA----AG-T-AT-CATAT---------------------GAAAATTTC-ATGACGAA-TT-TG-TGa
gi|25 : AA-T-TC---AGAA--TTA---ATTAGATAC-C-CTA-CATCAATA---CTGATA--AC---A-AAGTGC---AAACTCCTA----T---TTT--TCAA--ACAT-AAGTGAATT------TT--TAATCT-----AAAG-GAA-C----G-ccgttccttt
gi|27 : ATA-CTCCC-TACAAAAAGTTTA-ATCCAA-A-TC-GG-TGACATG-T-CATTTCCAACATTTGCCCATTGTGTTTG-ATGC--TT-ACAGAGAATGACT
gi|29 : CTC-TG-AAAA--TTTC-ATTAAG-A-TT-GA-TGACATATA-ATT-TCCAAC------CTTCT----TTG-ATGC--TG-AGACAGAATGTCTct
gi|3 : AATTAGAACGTCAAAA-ATATTGTGCAGTGTG-TATCATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---ACA-----TA------TTTGCATTT---ATG-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCACATATGCCCA-TTCTA------GT-TAACTAGGTAAAAA--TGG-ACGTC-AGTTGATGCAAAACTGAT-GATGGTC-ATT-GTTTTATTGTTTATCAAATTAT-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATT-ATG-CACTTT--TCTT---AGC-AATCAG--CATGATTTTCAAACT--TCGAGTTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTTGTA-TATTTA---AATGAAAA-TGT-CTA----AT-CTTTAAAT--TAC-AAC---T--GAAC-GCTTTCACT--G-GGAAT-AGC-TG---A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AGTTTT-T--AA---TGG---TAAAA-ATCAAATT--T-----G-A--CA-GC-C-A----TT-AAAA-----AATGAAGAAATG-AA-TA-G-A-TTCAGA-ATTTTTT------------TT--TCAGAAAATGACAAATGATTTAATAA--ATGTTTT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CTAGCATCA--A---CTGATA--A----A-AAGTGC--AAAACT-CTA----T---TTT--C--A--ACAT-AAGTTGATT------TT--T-ATCT-----AAAG-GAA-T----G-GCTGT--GTTACAGCA----TG--ACAA--------CGA---T-GAT-T----TG-T----C-AAA--TAA--C--ACAC---CCATGTACA--TTCA----AG-T-AT-CATAT---GGTAATA-TTTTC-TG-AAGAAGTTTC-ATGAAA-G-TTGGG-TGACATG-A-CTTGTCCAACT-----TTATT----TTG-ATGC--TT-ACAGAGAACTGCTctta
gi|30 : AAAATTTC-ATGAAG-T-TT-GG-TGACATT-A-CCTATGTAAC------TTATT----TTG-ATGC--TT-ACTGAGAATG
gi|32 : gACATG-A-CTTGTCCAAC------CGATT----TTG-ATGCATTT-ACAGAGAATGGCTc
gi|4 : ATTACAACGTCAAAA-ATATTGTGCAGTGTT-TGTTATTTAGT---T-AATT-A-AA--TTTGTT--GTA-TTTT-GATA-T-CTTAA-GT---AAA-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-AACA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTAG-TATTAA--TG--ACGTC-G-TTGAT-C-AAACTGAT-GATG-TC-ATC-G-TTTATTGTTAA--AAATTAG-CTTTACAAAGGCC-AAT-AA-CTCTT-GTct
gi|5 : ggggcttgctcgacaattcactaacagaggatgttgtgccaccactccccccaattcttaaaaagacagtccttacggcctcatacggtttgggggctcgcttgattgtttattttttatatattaggacctagaaatactaaaccgcttctcaggattctatactagtacacatgatattatcatatttacaaacaataaagttatctcaacattgttggacaagaacttttatcaataggaatcaggactagaaacttatatgtacattattttcatactattatagattgtattactatttcctcacacacatgttacctaatcatactaaaagcgccagttctacgtatcgataattaatatcaatatcgcatttattcttcatacaccacaccacattctcagtaattatttctgacagaatccttctttcaccgctatcttacagttgttgagaaaaatcaaacatagcaagttgctgttaaaatAATTAGAACGTCAAAA-ATATT-TGCAGTTCT-TATTATTTA-T---T-AATT-A-ATTTTTTTTTT-GTATTTTT-GGTG-T-CTTAAGGT---AAA-----TA------T-TGC-TTT----TA-AACACT--T---TTT--AAA-AATA-TAT---TTTT-GCA------------TCTAG-----GT-TAACTAG-TAAAAA--TGACACGTC-ATTTGAT-C-AAACTGAT-GATG-TC-AT--G-TTTATTGTT-AT-CAATTAT-TTTTACAAAGGGC-AA
gi|6 : ggggtgccaagtacctctaaatatgcctatgattatgacatgttttgcatggtccaggttagaatattattgatataccttaatgtacgtagccatttaaaggttggatttttttaatatattttttttaagttgcctcaagccatttaggccttagaattctgaaacagttttcatcaggattctatacatatagtgttgggacaaacttttaaaaattatgaatcacgactaaaatttaagtccaatctctctctaatagattgtatactagactcataactaaatccaaacattgtagactttgctattataccaagttcccattcttcggcattaatcacagattgtattttgagcatgtttctaatagaatttgggaaatcactgtttagtaagtgtagttgcctttcagttgtaaggaaaacctctaaatagtgcaatttgcttatataAG--CATAATTTTTAAA-T--TCGA-TTTATTT-CCTTAAATGAA---ATAT--GA--TAGTTCTGATT-CTTTTA-TAATTA---AATAAAAA-GGT-TTT----AT-CTTTAAAT--TAC-AAT---T--GACT-GC-TTCACT--T-GGAAA-GGT-TGC--A-TAAATTT-TTT---TT-AA-TTTG-TAT--GTGAA---AATA-ATC--------ATTTTT-TTAAA---TGG---T--AA-ATTGAATGTTT-----A-A--CCTGC-C-ATTATTT-AAAA-----GATGAAGAAATAAAA-CAGG---CTCAG--A-TTTCT------------TT--TCAG-AATTGAC-AATGA-GTATTAT--ATA-----------------TATG-TT-TTGCA---TCACTCACA-T-TT---AGTA--AGA---ATTAAATAC-T-CTAGCGTCA--AT--CTGAGA--AC---A-GAGTGG--AAAACTCGTA----T---TTTA-C--C--ACAT-CAATGAATT------TT--T-AGCC-----AAAA-GAATT----A-GCCCT--GTTCCA-C---------GCAA----------------GATAT----TG-C----C-AAATTTAC--C--AAAC---TCA--TACA--TCTG----AA-T-AT-GATATTAAAGTAATA-ATCGT-TG---AAAATTTC-ATGAAG-A-TT-GG-TGACATC-A-CCTATGTAAC------CT-----------ATGC--TT-ACTGAGAATGG
gi|7 : AATTAGAACGTCAAAA-ATATTGTGCAGTTTT-TATTATTCA-T---T-AATatctttaaaaatgtttaagatacacgga
gi|8 : gaggtgccaagtacctctaaatatgccattgattatgaccatgttttgcatgtccaggttagatattattgatttaccttacatgacgtacatttaaagagttgtttttttttaaatatattttttttttaaggtttgcctcaagccattaggccctagaattctaaaccaaaaagttttttcaattttcgggggatttttcatatacatatattacaaaataaatggtgtggaccaaacttttaaaaaatcataaatcacgacttaaaatttaagtcatatcttctctaatagcattgtatatatagacttcatttactaaatttcaaacatgtagactttggctatgataccaaagtcccattcttgcgcatatcatatatttgctattttgagatgtttctaacagaatttgggaaatacctgtttagatagtagtttcttttcaattacagggaaatcctaaaagtgcatttgcttatataAT--TAC-AAC---T--GTAC-AGCTTCACTT-G-GGAAT-AGC--GC--A-TA----C-TTT---TTTAA-TTTG-CATTAGTGAATAAAATACGTC--------AATTTT-T--AAAATTGG---T-AAA--TCAAAAA--TTGTGGA-C--CA-GC-C-A----TT-AAAAT----AAAGAAG-AATGAAA-TAGG-A-TTTAG--ATTTTTT------------CA--AGAA-AAATGACAAAT-A-GTAATAC---TG--TT--TATTTaa
gi|8 : aactA-ATATTACGAATA--TTGAT-TTT---TTTTAAACTT-TTACA---TCACACAAAAT-TC---AGAA--TTA---AT-AGATAC-CGCTAGCATCA--AAA-CTGATA--AC---A-AAGTGC--AAA-CTCCTA----T---TTTTTC--A--ACAT-AAGTGAATT------TT--TTATCT-----AAAG--AA-T----GCGTTCT--GTAAC--CA----TG--ACAA--------CGAAGGT-GATAT----TG-T----C-AAA--CAAACC--ACAC---CCA--TACA--TTCA----AG-T-ATCAATAT---AGTAATAATTTTCATG-AAAA--TTTC-ATGAAG------------CAT------TGTCCAAC------GGATT----TTG-ATGC--TTGACAGAGAATGtcctaatacacctcgttacccgaagttcccgatcccgtgtcctaatattacgaatattgattttttttaaacttttacatcacacaaaattcagaattaatagataccgctagcatcaaaactgataacaaagtgcaaactcctattttttcaacataagtgaattttttatctaaagaatgcgttctgtaaccatgacaacgaaggtgatattgtcaaacaaaccacacccatacattcaagtatcaatatagtaataattttcatgaaaatttcatgaagcattgtccaacggattttgatgcttgacagagaatgctct
gi|9 : aactattacaactgtacagcttcacttgggaatagcgcatacttttttaatttgcattagtgaataaaatacgtcaatttttaaaattggtaaatcaaaaattgtggaccagccattaaaataaagaagaatgaaataggatttagattttttcaagaaaaatgacaaatagtaatactgtttattttcctaatacacctcgttacccgaagttcccgatcccgtgtcctCAAT-AAC-T--C---T--TGTCTATTATGCATT-TACTTAGCAAAT--ACA-TGT-TTTTCTTATTCTTTAAAT--TACAAAC---T--GACA-GC--TCACC--ATGGAATAAGC-TGC--ATTA----CGTTT---TT-AA-TTTGCCAT--GTGAA---AG-A-GCC-------------------------------AAA-ATCAGGTA--T-----A-ACCCA-GT-CAA----TTAAAAA-----AATGAATAGATGAAACCAGG-A-CTAAGATATTTTTT------------TT--TCAG-AAATGAC-AATGA-GT--TAA--ATG---------TTG------ATA--T-TTCAA---TCACTTAAG-TGTCCCTAGAACGGTAATTATTAGATATAC-CTAGC-TC---A---TTGATA--AC---A-AAGTGCAAAAAACTCCTT----T---TTT--T--C--ACAT-AAGTGAA--------TT--T-ATCTAAAAGAAAA-GAA-T----G-TATCT--GTTAC--CA----GG----AA--------CGA--GTAGA-------TG-T----C-CAA--TAA--CT-ACAT---CCA--TACA--TTCA----AG-TAAT-GAT-T---AGTAATA-TTCTC-TG---AAAATTTCAATGAAG-A-TT-GG-TGACATG-ACCTTGTCCAA-------CGA-T----TTG-ATGC--TT-ACAGAGAATGGCTctct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GATGTTTGCCCCACCCCCCCCTAGTTTAAAGCCAGTCCTACGCCTATGTTTGTTTGGGGGGGGGTTATTTTTTATAGGCCTAGAATCTAAACAGTTTCCATCAGGTTCTATTACATACTATGTATTATATATTACAAAATAAAAAGTTATGTTATATTTTGTTGGACATAACTTTTAATCATGAATCAGGACTAGAATTTTATGTCCCAGATTTTCATCTAATAAATTGTATAGATTTTATTACTAATTTTTCAAAGCATGTAACCTTTAGTCCCTACATACCAAAATCCCGTT
Unaligned ( gi|19 ): GGGGTGCCAAGTACTCTAAATATGCCTATGATTATGACCATATGCAGGTGATTTACCTACATATACGTACATTTAAAGGTTTTTTTTTTTAAATATATTTTTTTTAAAGTTTGCCTCAAGCCATTAGGCTAGAAATTCTAAACAGTTTCATCAGGATCTATAAATATACAATGTATATTACAAAATAAAAGTGTTGGACAAACTTCTTAAAAAATCATAAAATCACGACTAAAGTC
Unaligned ( gi|22 ): TTTGCCCCCCTCCCCCTCCACTTTTGGCGAATGTTCTAATACTTTTTTTGTCTTGTCATCACATTACTTAGATGTTTGTCCCCCCCATTTAAAGTCAGTCAGGGACTACGCCTATGTTAGGGGGAGGGGGGTTGTTTATTTTTTATTAGGCCTAGA
Unaligned ( gi|26 ): GGGGTGCCACTACCTCTAAATATAGCCGTATACGTATTTTATGACATGTTTTGCTCTGAATTAGAATATTATTAGTTTACCTTTACGATT
Unaligned ( gi|28 ): TAGAATTTGGGAAATCACTGTTTAGATAGTGTAGTTGCCTTTCAGTTGTAAGGAAAACTTAAATAGTGCAATT
Unaligned ( gi|31 ): CCACCCTCTAAATATACCTATGATTATGACCTTGTTTTGTCTAGATTAGATTGATTGAT
Alignments
lowQualScore : 1111111 111 22 11111 111111 111 11 2222 33333333 111111 11 1 1 11 11 222222 111 2222 111 111 1111 222222 111 11 111 22222222 1111 111 11111 3333333333333 1111 11111 1 11 222222222222 1 6666666666666666666666 111 222222 1111 11111111 1111 11111 22 11111111 11111 11 22222 11 111 22222222
lowQualScore : 5 4 3333333 4 4 666 0 44 4 4 2 4 4 4 777 11111 222222 5 9999 4 222 777 11 4 4 5555 4 55555555 4 777777 4 4 22 66 00 4 8 4 3 0 8 4 8 66 5 7 5 99 4 4 5 5 4 1 0 5 11 66 1 888 5 55 66 7 3 66 99 5 8 1 44 111111 77 0 5 33 5 000 6 6 0000 6 3 77 5 000 77 999 333 5555 5 5 77 5 333333 000 5 5 5 33 000 5 00000000 0 8888 000 77777 5 1111111111111 77 5 5 0000 5 77777 1 0 777 11 6 555555555555 66 1 5 1 5 7 5 77 7777777777777777777777 5 5 000 5 5 888 777 888 5 5 2 6 444444 66 777 4 66 8888 777 77777777 4 4 66 7777 22222 77 4 9999 4 66 0 66 9999 66 66666666 33333 0 9999 4 9999 8 00 00000 777 66 66 9999 999 22 777 66 4 555 5 4 888 4 4 55 4 3 5 00000000 8888 4 55 4
lowQualScore : . . ....... . . ... . .. . . . . . . ... ..... ...... . .... . ... ... .. . . .... . ........ . ...... . . .. .. .. . . . . . . . . .. . . . .. . . . . . . . . .. .. . ... . .. .. . . .. .. . . . .. ...... .. . . .. . ... . . .... . . .. . ... .. ... ... .... . . .. . ...... ... . . . .. ... . ........ . .... ... ..... . ............. .. . . .... . ..... . . ... .. . ............ .. . . . . . . .. ...................... . . ... . . ... ... ... . . . . ...... .. ... . .. .... ... ........ . . .. .... ..... .. . .... . .. . .. .... .. ........ ..... . .... . .... . .. ..... ... .. .. .... ... .. ... .. . ... . . ... . . .. . . . ........ .... . .. .
lowQualScore : 0 4 1111111 4 4 777 1 33 4 4 9 4 4 4 888 11111 888888 4 7777 4 222 888 00 0 0 0000 0 33333333 4 222222 4 4 00 11 66 4 9 0 0 6 0 0 0 33 7 2 3 99 4 4 0 0 4 0 1 0 22 99 0 888 0 22 11 3 9 11 00 0 9 4 11 777777 99 1 7 11 7 000 7 7 8888 7 2 99 7 000 99 777 666 1111 7 7 99 7 999999 000 7 7 7 66 000 7 77777777 3 0000 000 11111 7 9999999999999 33 7 7 6666 0 55555 0 0 111 99 2 666666666666 99 7 7 9 4 9 0 88 4444444444444444444444 7 7 000 0 0 888 999 888 0 0 5 2 333333 11 888 4 11 3333 888 11111111 4 4 99 9999 55555 22 4 4444 4 99 1 66 4444 11 11111111 66666 8 4444 4 4444 9 66 00000 888 11 11 4444 888 99 888 55 4 111 7 0 000 0 0 66 0 9 7 22222222 5555 0 55 0
consensus : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
Reference ( family-4150 ) : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
gi|1 : CAATGTT--ATTATTTA-T-----ATTT-ACA---TTTATTTTGTA-TTTT-GTTT-T-TCTAA-GT---TAA-----CACTGAAATTTG-ACTT---GTATAACAC---T---TTT--AAA-TATT-TA----TTTT--TG---A----CAATTCTA------GTCTAACTAG-TAAAAT--TG--ACGTC-A-TTGGT-CAAA-CTGAT-GATG-TC-ATT-GTATTAAT-TTTAT-CAATTAT-TTTTACAAAGGGC-AAT-AAACTCTTTGTAATTTTATGTCATTTTAACCTT---TGC-CC-AATTTCATAATTT-CAAACTAATCGA-TTTATTT-C-CGTAATCAATAAACA---CT--T--TTTTTATT-TTGATATTATTTA---AATGAAAA-TGTCTTT----AT-C--TGGATGGTGG-ACG---TGGGATCAGCTT--ACTGCG-GAAAT-AGCATGCTGG-TGGT--T-TTT---TT-AATTTTG-CATC-GTGAA---AATG-GTCATTTTTAGAATTTT-C--AA---TGGGTTT-AAAGATCAGATG--------A-C--CA-GC-C-A----TT-AAGATAATTGATGATGAAATGAAATTAGGCA-CTCAG--A--TTTT------------TT--TCAG-AAATGACAAAT---GTCGTAT--A------------TG--TTTTATA-TTGTTCCAATTTCACACAAA-T-TC---ATGA--ATA---ATTAGATAC-C-CTAGCATCAT-A---CTGATA--AC---C-AAATGC--AAAACTCCTA----TTGATCT--C--A--ACAA-AC-GTG-ATT--TTAAT-ATTA-----AAAGCGAA-GAGGAG-GCTCTCCCTTAC--CAAGGTCG--ACAACTGAAATTCGA--GT-TACACTCTGTG-T----CAAAA--TAA--CCGACGCCGGCCA--TA-----TCAGCATAGTT-AT--ATAT---AGTAATA-TT
gi|10 : gttgaatagtagatgataagtttgtattatcagttcttcatggcaaagatcctaaatcgtgtacaatttgctttatataaatttagaacgctccagaaaatattgtttgctagtgatgtaaactgtgctggaaattttactcacAAAACTTTAAAAGATACTGTGCAA-ATT-TATCATTTA-T---G-AATTTA-A---TTTTTTG-GTA-TCTT-G--T-T-TCAAA-GTCCGAGT-----TA------TTTGCATTT---ATA-AACACTTTT---TTT--AAA-AACAGTAGTTTTTTT-GCA---gtaggtgtctggggatagtgattcgagttgtacatgacagtgtcaaccgccatatcacgttgagtgcttagcggggaggtgc
gi|11 : tactacttatcggtacattaaagctgggttttttaatttttttttaaaagttgcctcaagccatataggctagaattctaaaatagtttcacaagacatgtctatcattatattacaaaaaaagttcagttatgatattgtaggacaacgtttaaaaaaattcatgaatcaaccacagaagtacttcagatttctctgataaattgtatagatttcattactatttcaaaagtagaacttaggctatcatataccaaatcgtgtctttcgcaattgattattcattctattctcccaacatatttaggatatatgaagaggaaacatgcatagaaggcaagttgcttatacaaaatag-ATGTTGT----TATT-AAATATTTA-TGGAT-AGCT-A-A---TTTTTTTTGTA-TTTT-ATTTGT-TTTAA-GT---AAAAAATTTA------TATGCATTTTAAACC-AACAC---TCCCTCTGGAGA-AATA-TAACAATTTT-GCA--------CA-TTCTA------GT-TAACTAG-TAACAAAGTG--ACGTC-A-TTGAT-C-AGACTGATGGATG-TCGATCTGTTTTGT
gi|12 : tgagatgttcataaacaacagaatttggggcaatcactgattagaatacttatttaagatatattttcttacagtgcatgtatgctatttgaaccacacgagtcctaattaaaatctgcatattatgcttatataaaagtttagaaacgaatgaatattcaaaatactttggcaagggaatggAACGTCGAAA--TATTGTGCAGTGTTGTATTATT---------AATT-A-A---ATTGTT--GTA-TTTTTGGTC-TCTTTAA-GG---AAC-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-GA-A-TA----TTTC-------A----CA-TTCTA------GT-TAATTTA-TATTAA--TG--ACGTCCA-TTGAT-CAAA-CTGATTGATG-TC-ATC-GTTT-ATTGTTAA---AAT--G-CTTAACAAAGGGC-AAT-AA-CTCTT-GTCTA-TTATG-CA-TTT--ACTT---AGC-AA-ATA--CATGTTTTTC-------------TTATTC-T-TTAAATTA
gi|14 : tacacccacatactcagtaattatttctgacaggaatttaaaataattccttctttcacaggtatcttacagttgttgagataattcgaactgagcagttgttgtaaaatatagacTTTAGT---T-AATT-A-AA--TTTGTT--ATA-TTTT-GGGT-T-TTTAA-GT---AAA-----TA------TTAGCATTT---ATA-AACAC---T---TTT--CAA-AATA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTAG-TATCAA--TG--ACGTC-A-TTGAT-CAAA-CTGAT-GATG-TA-ATC-GTTT-ATTGTTAA--AAATTAGATTTTACAAAAGGC-AAT-AA-CTCTT-ATCAATTTATG-TACATT--TATT---AGC-AT-AAA--CATGATTTTCAAG-T--TCGA-TTTATTTCC-TTAAATCA---AATAT--GAATT--TTTTTATT-TTTGCA-TATTTA---AATGAAc
gi|15 : TT-TTTCACTGATG-CACATT--TATT---GGC-AA-AAA--CCTAATTTTTAAACT--TCGA-TTTATTT-CCTTAAATCAA---ATATGACA--T--TTTTTATT-TTTATA-TATTGA---AATGGAAA-TGT-TTTT---AT-CTTTAAAT--TAC-AATAATT--GAAA-ACTT-CACT--G-GGAAT-AGT-TGC--A-TA----A-TTTGTTTT-AA-GTTG-CGT--GTGAA---AATA-GTA--------AATTTT-TGTAA---TGG---T-AAA-ATCAAATA--A-----A-C--CT-GC-C-A----TT-AGAA-----AATGAATAAATGAAA-CAGA-A-CTCAG--AGTTTTG------------TT--
gi|16 : t----TT-AGAA-----AAT-AATAAATAAAA-CAGG-AACTTAG--ATTTTTTTTTTTTTTTTTTTT--TTTG-AATTGAC-AATGA-GTAATAT--A-G----------------TTATA-TT-TTCCA---TCACACAAA-T-TC---AGTA--ATA---ATTAAATAC-T-TTACCGTCA--AAACCTGATA--AC---ATAAGTGC--AAATCTCCTAGAGTT---TTT--CA-A--ACAT-AATATTATTTTCTT--T-ATCT-----AAAA-GAC-T----G-GCTCT--G-TAT--CA----TGGAACTA--------CGT--G--GATGT-------T----C-AA------------------------ACA--TTCA----AA-T-AT--ATAT---AGTAATA-ATCT
gi|17 : A--A---TTGATATAACGTAA-AGGTGC--AAAACTCCTAT---T---TTT--C--A--ACATAAA-GTGA
gi|17 : aA----TG--GCA---------CGA---T-GATAT----TGGT----C-AAA--TAA--CTTACAT---CCA--TACA--TTCA----AG---AT-GA-GC---AGTAATA-GTCTC-TG-AAAA-ATTTC-ATGAAG-A-TT-GGTTGACATG-A-C-TGTCCAACG-----CGATT----TTGAATGC--TT-ACAGA-AATGGCTgagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagatggcacgatgatattggtcaaataacttacatccatacattcaagatgagcagtaatagtctctgaaaaatttcatgaagattggttgacatgactgtccaacgcgattttgaatgcttacagaaatggctctt
gi|18 : aaattgatataacgtaaaggtgcaaaactcctatttttcaacataaagtgagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CCATCATCA--AA--CTAATA--AC---A-AAGTGC--AAAACTCCTAT---T---TTT--C--ACCACAT-AA-G-GAATT--TTA-TAATCT-----AAA--GAA-T----G-GTTCT--GTT--A-CA----TG--ACAA--------CGA--GT-GGTAT----TG-T----CAAAA--TAAC-C--ACAC---CCA--TACA--TTCA----AG-TAAT-GATAT---AGTAATA-TTCTC-TG---AAAATTTC-ATGAAG-ATTT-GG-TGACATG-A-CTT-TCCAA-------CGATT----TTG-ATGC--TT-ACAGAGAATGGCTctt
gi|2 : AAAA-ATATTGTGCAGTGTT-TGTTATTTA-T---TTAATT-A-A---ATTGTT--GTA-TTT--GGTC-T-CTTAA-GT---AAA-----TA------TCTGCA--T---ATA-AACAC---T---TTTTAAAA-AATA-TAT---TTTT-GC----A----CA-TTCTA------GT-TAATTAG-TATTAA--TG--ACGTC-G-TTGAT-C-AAACTGAT-GACG-TCAATC-G-TTTATTGTTAA--AAAGTAG-CTTTACAAAGGGCAAATAAA-CTCTT-GTCTATCTATG-CACCAT--TTAC---AACAAA-AAA--CATA--TTTC--ACT--TCGA--TTATTT-C-
gi|20 : tttgccaccccccctccacttggcgcagtgtatctattactgttattggggggcttagttacagttatttagatgtttgccccctcaccccccctaatttaaagaacagtcctaaacgctatgtttgtttggggggggggttaaggttttgttataggcctagaatcttaaaacagttttcatcaggatctattacactacatatgtatgattattaacaaataaaagttatgttataatttttggaaaactttttcataatcaaggactagaaatttactgtccaatttctcaataaattgtatagatttattaacattttccaaacaatgtaaccttagcctacatcataccaaatcccgttcttacgtatgaattttcattcgatttttttatacacacacaattgcttcttaattctatagatacacacacatatactacacacattctcagtatttgatttctgacagaatttaagaaatgatttcctctttcataagtatcttaacagttgtttagaaaattcgaaaatagccagttgctgtttataatatacaaccgttg-TTAAAT--AT-GACAT---A--T--CTG--ATT-TTCGTA-TTTTTG---AATGAAAAATGT-T-------------AAAT--CAC-AAC---T--GACA-GCTT-CACT--G-AAGAT-AGC-TGC--A-CA----C-CTT---TT-------G-TAT--GTGAA---AATA-GTC--------AATTTTGT--AA---TGG-----AAA-ATCAAATA--T-----ATA--CC-CCGC-A----TT-AAGA-----ATTGAATAAATGAAA-GAGT-A-CTCAG--ATTTTTT------------TTCATC------T-----ATTA-GTA------ACG--TT--T-GTTGCCTTTTACA-TT-CTCTA---Tcga
gi|21 : TT--AAATCATA-TA----TTTTTGCA---ATA--CA-TTCTGCTTTTTGG-TAAATAA-TATAAA--CC--TCA-C-A-TTGAT----AATTCTC-GATG-T-------TTACATTGATTAG-AAACT-G-ATTTACAAAGG-C-A-T-AA-CTCTT-GTCGATATATG-CATATA--TATT---AGC-AC-AAA--CATGATTTTTAAACT--TCGA--TCATTT-C-CT
gi|23 : taaaaattaccctgtcgaatttaAT-CAAA-CTGAT-GATG-TC-ATT-GTTT-ATTGC-CAT-AAATAAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATTTATG-CACTTT--TTTTAAAAGC-AA-AAA--CATGATTTTC-AACT--TCGA-TTta
gi|24 : A-T----G-GCTCT--GTTAC--CA----TG--ACAA--------CGA--GT-GATAT----TG-TTCAAC-AAAT-TAC--C--ACAC---CC---TACATCTTCA----AG-T-AT-CATAT---------------------GAAAATTTC-ATGACGAA-TT-TG-TGa
gi|25 : AA-T-TC---AGAA--TTA---ATTAGATAC-C-CTA-CATCAATA---CTGATA--AC---A-AAGTGC---AAACTCCTA----T---TTT--TCAA--ACAT-AA-GTGAATT--TT--TAATCT-----AAAG-GAA-C----G-ccgttccttt
gi|27 : ATA-CTCCC-TACAAAAAGTTTA-ATCCAA-A-TC-GG-TGACATG-T-CATTTCCAACATTTGCCCATTGTGTTTG-ATGC--TT-ACAGAGAATGACT
gi|29 : CTC-TG-AAAA--TTTC-ATTAAG-A-TT-GA-TGACATATA-ATT-TCCAAC------CTTCT----TTG-ATGC--TG-AGACAGAATGTCTct
gi|3 : AATTAGAACGTCAAAA-ATATTGTGCAGTGTG-TATCATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---ACA-----TA------TTTGCATTT---ATG-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCACATATGCCCA-TTCTA------GT-TAACTAGGTAAAAA--TGG-ACGTC-AGTTGATGCAAAACTGAT-GATGGTC-ATT-GTTTTATTGTTTATCAAATTAT-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATT-ATG-CACTTT--TCTT---AGC-AATCAG--CATGATTTTCAAACT--TCGAGTTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTTGTA-TATTTA---AATGAAAA-TGT-CTA----AT-CTTTAAAT--TAC-AAC---T--GAAC-GCTTTCACT--G-GGAAT-AGC-TG---A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AGTTTT-T--AA---TGG---TAAAA-ATCAAATT--T-----G-A--CA-GC-C-A----TT-AAAA-----AATGAAGAAATG-AA-TA-G-A-TTCAGA-ATTTTTT------------TT--TCAGAAAATGACAAATGATTTAATAA--ATGTTTT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CTAGCATCA--A---CTGATA--A----A-AAGTGC--AAAACT-CTA----T---TTT--C--A--ACAT-AA-GTTGATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTGT--GTTACAGCA----TG--ACAA--------CGA---T-GAT-T----TG-T----C-AAA--TAA--C--ACAC---CCATGTACA--TTCA----AG-T-AT-CATAT---GGTAATA-TTTTC-TG-AAGAAGTTTC-ATGAAA-G-TTGGG-TGACATG-A-CTTGTCCAACT-----TTATT----TTG-ATGC--TT-ACAGAGAACTGCTctta
gi|30 : AAAATTTC-ATGAAG-T-TT-GG-TGACATT-A-CCTATGTAAC------TTATT----TTG-ATGC--TT-ACTGAGAATG
gi|32 : gACATG-A-CTTGTCCAAC------CGATT----TTG-ATGCATTT-ACAGAGAATGGCTc
gi|4 : ATTACAACGTCAAAA-ATATTGTGCAGTGTT-TGTTATTTAGT---T-AATT-A-AA--TTTGTT--GTA-TTTT-GATA-T-CTTAA-GT---AAA-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-AACA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTAG-TATTAA--TG--ACGTC-G-TTGAT-C-AAACTGAT-GATG-TC-ATC-G-TTTATTGTTAA--AAATTAG-CTTTACAAAGGCC-AAT-AA-CTCTT-GTct
gi|5 : ggggcttgctcgacaattcactaacagaggatgttgtgccaccactccccccaattcttaaaaagacagtccttacggcctcatacggtttgggggctcgcttgattgtttattttttatatattaggacctagaaatactaaaccgcttctcaggattctatactagtacacatgatattatcatatttacaaacaataaagttatctcaacattgttggacaagaacttttatcaataggaatcaggactagaaacttatatgtacattattttcatactattatagattgtattactatttcctcacacacatgttacctaatcatactaaaagcgccagttctacgtatcgataattaatatcaatatcgcatttattcttcatacaccacaccacattctcagtaattatttctgacagaatccttctttcaccgctatcttacagttgttgagaaaaatcaaacatagcaagttgctgttaaaatAATTAGAACGTCAAAA-ATATT-TGCAGTTCT-TATTATTTA-T---T-AATT-A-ATTTTTTTTTT-GTATTTTT-GGTG-T-CTTAAGGT---AAA-----TA------T-TGC-TTT----TA-AACACT--T---TTT--AAA-AATA-TAT---TTTT-GCA------------TCTAG-----GT-TAACTAG-TAAAAA--TGACACGTC-ATTTGAT-C-AAACTGAT-GATG-TC-AT--G-TTTATTGTT-AT-CAATTAT-TTTTACAAAGGGC-AA
gi|6 : ggggtgccaagtacctctaaatatgcctatgattatgacatgttttgcatggtccaggttagaatattattgatataccttaatgtacgtagccatttaaaggttggatttttttaatatattttttttaagttgcctcaagccatttaggccttagaattctgaaacagttttcatcaggattctatacatatagtgttgggacaaacttttaaaaattatgaatcacgactaaaatttaagtccaatctctctctaatagattgtatactagactcataactaaatccaaacattgtagactttgctattataccaagttcccattcttcggcattaatcacagattgtattttgagcatgtttctaatagaatttgggaaatcactgtttagtaagtgtagttgcctttcagttgtaaggaaaacctctaaatagtgcaatttgcttatataAG--CATAATTTTTAAA-T--TCGA-TTTATTT-CCTTAAATGAA---ATAT--GA--TAGTTCTGATT-CTTTTA-TAATTA---AATAAAAA-GGT-TTT----AT-CTTTAAAT--TAC-AAT---T--GACT-GC-TTCACT--T-GGAAA-GGT-TGC--A-TAAATTT-TTT---TT-AA-TTTG-TAT--GTGAA---AATA-ATC--------ATTTTT-TTAAA---TGG---T--AA-ATTGAATGTTT-----A-A--CCTGC-C-ATTATTT-AAAA-----GATGAAGAAATAAAA-CAGG---CTCAG--A-TTTCT------------TT--TCAG-AATTGAC-AATGA-GTATTAT--ATA-----------------TATG-TT-TTGCA---TCACTCACA-T-TT---AGTA--AGA---ATTAAATAC-T-CTAGCGTCA--AT--CTGAGA--AC---A-GAGTGG--AAAACTCGTA----T---TTTA-C--C--ACAT-CA-ATGAATT--TT--T-AGCC-----AAAA-GAATT----A-GCCCT--GTTCCA-C---------GCAA----------------GATAT----TG-C----C-AAATTTAC--C--AAAC---TCA--TACA--TCTG----AA-T-AT-GATATTAAAGTAATA-ATCGT-TG---AAAATTTC-ATGAAG-A-TT-GG-TGACATC-A-CCTATGTAAC------C--T---------ATGC--TT-ACTGAGAATGG
gi|7 : AATTAGAACGTCAAAA-ATATTGTGCAGTTTT-TATTATTCA-T---T-AATatctttaaaaatgtttaagatacacgga
gi|8 : gaggtgccaagtacctctaaatatgccattgattatgaccatgttttgcatgtccaggttagatattattgatttaccttacatgacgtacatttaaagagttgtttttttttaaatatattttttttttaaggtttgcctcaagccattaggccctagaattctaaaccaaaaagttttttcaattttcgggggatttttcatatacatatattacaaaataaatggtgtggaccaaacttttaaaaaatcataaatcacgacttaaaatttaagtcatatcttctctaatagcattgtatatatagacttcatttactaaatttcaaacatgtagactttggctatgataccaaagtcccattcttgcgcatatcatatatttgctattttgagatgtttctaacagaatttgggaaatacctgtttagatagtagtttcttttcaattacagggaaatcctaaaagtgcatttgcttatataAT--TAC-AAC---T--GTAC-AGCTTCACTT-G-GGAAT-AGC--GC--A-TA----C-TTT---TTTAA-TTTG-CATTAGTGAATAAAATACGTC--------AATTTT-T--AAAATTGG---T-AAA--TCAAAAA--TTGTGGA-C--CA-GC-C-A----TT-AAAAT----AAAGAAG-AATGAAA-TAGG-A-TTTAG--ATTTTTT------------CA--AGAA-AAATGACAAAT-A-GTAATAC---TG--TT--TATTTaa
gi|8 : aactA-ATATTACGAATA--TTGAT-TTT---TTTTAAACTT-TTACA---TCACACAAAAT-TC---AGAA--TTA---AT-AGATAC-CGCTAGCATCA--AAA-CTGATA--AC---A-AAGTGC--AAA-CTCCTA----T---TTTTTC--A--ACAT-AA-GTGAATT--TT--TTATCT-----AAAG--AA-T----GCGTTCT--GTAAC--CA----TG--ACAA--------CGAAGGT-GATAT----TG-T----C-AAA--CAAACC--ACAC---CCA--TACA--TTCA----AG-T-ATCAATAT---AGTAATAATTTTCATG-AAAA--TTTC-ATGAAG------------CAT------TGTCCAAC------GGATT----TTG-ATGC--TTGACAGAGAATGtcctaatacacctcgttacccgaagttcccgatcccgtgtcctaatattacgaatattgattttttttaaacttttacatcacacaaaattcagaattaatagataccgctagcatcaaaactgataacaaagtgcaaactcctattttttcaacataagtgaattttttatctaaagaatgcgttctgtaaccatgacaacgaaggtgatattgtcaaacaaaccacacccatacattcaagtatcaatatagtaataattttcatgaaaatttcatgaagcattgtccaacggattttgatgcttgacagagaatgctct
gi|9 : aactattacaactgtacagcttcacttgggaatagcgcatacttttttaatttgcattagtgaataaaatacgtcaatttttaaaattggtaaatcaaaaattgtggaccagccattaaaataaagaagaatgaaataggatttagattttttcaagaaaaatgacaaatagtaatactgtttattttcctaatacacctcgttacccgaagttcccgatcccgtgtcctCAAT-AAC-T--C---T--TGTCTATTATGCATT-TACTTAGCAAAT--ACA-TGT-TTTTCTTATTCTTTAAAT--TACAAAC---T--GACA-GC--TCACC--ATGGAATAAGC-TGC--ATTA----CGTTT---TT-AA-TTTGCCAT--GTGAA---AG-A-GCC-------------------------------AAA-ATCAGGTA--T-----A-ACCCA-GT-CAA----TTAAAAA-----AATGAATAGATGAAACCAGG-A-CTAAGATATTTTTT------------TT--TCAG-AAATGAC-AATGA-GT--TAA--ATG---------TTG------ATA--T-TTCAA---TCACTTAAG-TGTCCCTAGAACGGTAATTATTAGATATAC-CTAGC-TC---A---TTGATA--AC---A-AAGTGCAAAAAACTCCTT----T---TTT--T--C--ACAT-AA-GTGAA----TT--T-ATCTAAAAGAAAA-GAA-T----G-TATCT--GTTAC--CA----GG----AA--------CGA--GTAGA-------TG-T----C-CAA--TAA--CT-ACAT---CCA--TACA--TTCA----AG-TAAT-GAT-T---AGTAATA-TTCTC-TG---AAAATTTCAATGAAG-A-TT-GG-TGACATG-ACCTTGTCCAA-------CGA-T----TTG-ATGC--TT-ACAGAGAATGGCTctct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GATGTTTGCCCCACCCCCCCCTAGTTTAAAGCCAGTCCTACGCCTATGTTTGTTTGGGGGGGGGTTATTTTTTATAGGCCTAGAATCTAAACAGTTTCCATCAGGTTCTATTACATACTATGTATTATATATTACAAAATAAAAAGTTATGTTATATTTTGTTGGACATAACTTTTAATCATGAATCAGGACTAGAATTTTATGTCCCAGATTTTCATCTAATAAATTGTATAGATTTTATTACTAATTTTTCAAAGCATGTAACCTTTAGTCCCTACATACCAAAATCCCGTT
Unaligned ( gi|19 ): GGGGTGCCAAGTACTCTAAATATGCCTATGATTATGACCATATGCAGGTGATTTACCTACATATACGTACATTTAAAGGTTTTTTTTTTTAAATATATTTTTTTTAAAGTTTGCCTCAAGCCATTAGGCTAGAAATTCTAAACAGTTTCATCAGGATCTATAAATATACAATGTATATTACAAAATAAAAGTGTTGGACAAACTTCTTAAAAAATCATAAAATCACGACTAAAGTC
Unaligned ( gi|22 ): TTTGCCCCCCTCCCCCTCCACTTTTGGCGAATGTTCTAATACTTTTTTTGTCTTGTCATCACATTACTTAGATGTTTGTCCCCCCCATTTAAAGTCAGTCAGGGACTACGCCTATGTTAGGGGGAGGGGGGTTGTTTATTTTTTATTAGGCCTAGA
Unaligned ( gi|26 ): GGGGTGCCACTACCTCTAAATATAGCCGTATACGTATTTTATGACATGTTTTGCTCTGAATTAGAATATTATTAGTTTACCTTTACGATT
Unaligned ( gi|28 ): TAGAATTTGGGAAATCACTGTTTAGATAGTGTAGTTGCCTTTCAGTTGTAAGGAAAACTTAAATAGTGCAATT
Unaligned ( gi|31 ): CCACCCTCTAAATATACCTATGATTATGACCTTGTTTTGTCTAGATTAGATTGATTGAT
Alignments
lowQualScore : 1111111 111 22 11111 111111 111 11 2222 33333333 111111 11 1 1 11 11 222222 111 2222 111 111 1111 222222 111 11 111 22222222 1111 111 11111 3333333333333 1111 11111 1 11 222222222222 1 6666666666666666666666 111 222222 1111 11111111 1111 11111 22 11111111 11111 11 22222 11 111 22222222
lowQualScore : 5 4 3333333 4 4 666 0 44 4 4 2 4 4 4 777 11111 222222 5 9999 4 222 777 11 4 4 5555 4 55555555 4 777777 4 4 22 66 00 4 8 4 3 0 8 4 8 66 5 7 5 99 4 4 5 5 4 1 0 5 11 66 1 888 5 55 66 7 3 66 99 5 8 1 44 111111 77 0 5 33 5 000 6 6 0000 6 3 77 5 000 77 999 333 5555 5 5 77 5 333333 000 5 5 5 33 000 5 00000000 0 8888 000 77777 5 1111111111111 77 5 5 0000 5 77777 1 0 777 11 6 555555555555 66 1 5 1 5 7 5 77 7777777777777777777777 5 5 000 5 5 888 777 888 5 5 2 6 444444 66 777 4 66 8888 777 77777777 4 4 66 7777 22222 77 4 9999 4 66 0 66 9999 66 66666666 33333 0 9999 4 9999 8 00 00000 777 66 66 9999 999 22 777 66 4 555 5 4 888 4 4 55 4 3 5 00000000 8888 4 55 4
lowQualScore : . . ....... . . ... . .. . . . . . . ... ..... ...... . .... . ... ... .. . . .... . ........ . ...... . . .. .. .. . . . . . . . . .. . . . .. . . . . . . . . .. .. . ... . .. .. . . .. .. . . . .. ...... .. . . .. . ... . . .... . . .. . ... .. ... ... .... . . .. . ...... ... . . . .. ... . ........ . .... ... ..... . ............. .. . . .... . ..... . . ... .. . ............ .. . . . . . . .. ...................... . . ... . . ... ... ... . . . . ...... .. ... . .. .... ... ........ . . .. .... ..... .. . .... . .. . .. .... .. ........ ..... . .... . .... . .. ..... ... .. .. .... ... .. ... .. . ... . . ... . . .. . . . ........ .... . .. .
lowQualScore : 0 4 1111111 4 4 777 1 33 4 4 9 4 4 4 888 11111 888888 4 7777 4 222 888 00 0 0 0000 0 33333333 4 222222 4 4 00 11 66 4 9 0 0 6 0 0 0 33 7 2 3 99 4 4 0 0 4 0 1 0 22 99 0 888 0 22 11 3 9 11 00 0 9 4 11 777777 99 1 7 11 7 000 7 7 8888 7 2 99 7 000 99 777 666 1111 7 7 99 7 999999 000 7 7 7 66 000 7 77777777 3 0000 000 11111 7 9999999999999 33 7 7 6666 0 55555 0 0 111 99 2 666666666666 99 7 7 9 4 9 0 88 4444444444444444444444 7 7 000 0 0 888 999 888 0 0 5 2 333333 11 888 4 11 3333 888 11111111 4 4 99 9999 55555 22 4 4444 4 99 1 66 4444 11 11111111 66666 8 4444 4 4444 9 66 00000 888 11 11 4444 888 99 888 55 4 111 7 0 000 0 0 66 0 9 7 22222222 5555 0 55 0
consensus : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
Reference ( family-4150 ) : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
gi|1 : CAATGTT--ATTATTTA-T-----ATTT-ACA---TTTATTTTGTA-TTTT-GTTT-T-TCTAA-GT---TAA-----CACTGAAATTTG-ACTT---GTATAACAC---T---TTT--AAA-TATT-TA----TTTT--TG---A----CAATTCTA------GTCTAACTAG-TAAAAT--TG--ACGTC-A-TTGGT-CAAA-CTGAT-GATG-TC-ATT-GTATTAAT-TTTAT-CAATTAT-TTTTACAAAGGGC-AAT-AAACTCTTTGTAATTTTATGTCATTTTAACCTT---TGC-CC-AATTTCATAATTT-CAAACTAATCGA-TTTATTT-C-CGTAATCAATAAACA---CT--T--TTTTTATT-TTGATATTATTTA---AATGAAAA-TGTCTTT----AT-C--TGGATGGTGG-ACG---TGGGATCAGCTT--ACTGCG-GAAAT-AGCATGCTGG-TGGT--T-TTT---TT-AATTTTG-CATC-GTGAA---AATG-GTCATTTTTAGAATTTT-C--AA---TGGGTTT-AAAGATCAGATG--------A-C--CA-GC-C-A----TT-AAGATAATTGATGATGAAATGAAATTAGGCA-CTCAG--A--TTTT------------TT--TCAG-AAATGACAAAT---GTCGTAT--A------------TG--TTTTATA-TTGTTCCAATTTCACACAAA-T-TC---ATGA--ATA---ATTAGATAC-C-CTAGCATCAT-A---CTGATA--AC---C-AAATGC--AAAACTCCTA----TTGATCT--C--A--ACAA-AC-GTG-ATT--TTAAT-ATTA-----AAAGCGAA-GAGGAG-GCTCTCCCTTAC--CAAGGTCG--ACAACTGAAATTCGA--GT-TACACTCTGTG-T----CAAAA--TAA--CCGACGCCGGCCA--TA-----TCAGCATAGTT-AT--ATAT---AGTAATA-TT
gi|10 : gttgaatagtagatgataagtttgtattatcagttcttcatggcaaagatcctaaatcgtgtacaatttgctttatataaatttagaacgctccagaaaatattgtttgctagtgatgtaaactgtgctggaaattttactcacAAAACTTTAAAAGATACTGTGCAA-ATT-TATCATTTA-T---G-AATTTA-A---TTTTTTG-GTA-TCTT-G--T-T-TCAAA-GTCCGAGT-----TA------TTTGCATTT---ATA-AACACTTTT---TTT--AAA-AACAGTAGTTTTTTT-GCA---gtaggtgtctggggatagtgattcgagttgtacatgacagtgtcaaccgccatatcacgttgagtgcttagcggggaggtgc
gi|11 : tactacttatcggtacattaaagctgggttttttaatttttttttaaaagttgcctcaagccatataggctagaattctaaaatagtttcacaagacatgtctatcattatattacaaaaaaagttcagttatgatattgtaggacaacgtttaaaaaaattcatgaatcaaccacagaagtacttcagatttctctgataaattgtatagatttcattactatttcaaaagtagaacttaggctatcatataccaaatcgtgtctttcgcaattgattattcattctattctcccaacatatttaggatatatgaagaggaaacatgcatagaaggcaagttgcttatacaaaatag-ATGTTGT----TATT-AAATATTTA-TGGAT-AGCT-A-A---TTTTTTTTGTA-TTTT-ATTTGT-TTTAA-GT---AAAAAATTTA------TATGCATTTTAAACC-AACAC---TCCCTCTGGAGA-AATA-TAACAATTTT-GCA--------CA-TTCTA------GT-TAACTAG-TAACAAAGTG--ACGTC-A-TTGAT-C-AGACTGATGGATG-TCGATCTGTTTTGT
gi|12 : tgagatgttcataaacaacagaatttggggcaatcactgattagaatacttatttaagatatattttcttacagtgcatgtatgctatttgaaccacacgagtcctaattaaaatctgcatattatgcttatataaaagtttagaaacgaatgaatattcaaaatactttggcaagggaatggAACGTCGAAA--TATTGTGCAGTGTTGTATTATT---------AATT-A-A---ATTGTT--GTA-TTTTTGGTC-TCTTTAA-GG---AAC-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-GA-A-TA----TTTC-------A----CA-TTCTA------GT-TAATTTA-TATTAA--TG--ACGTCCA-TTGAT-CAAA-CTGATTGATG-TC-ATC-GTTT-ATTGTTAA---AAT--G-CTTAACAAAGGGC-AAT-AA-CTCTT-GTCTA-TTATG-CA-TTT--ACTT---AGC-AA-ATA--CATGTTTTTC-------------TTATTC-T-TTAAATTA
gi|14 : tacacccacatactcagtaattatttctgacaggaatttaaaataattccttctttcacaggtatcttacagttgttgagataattcgaactgagcagttgttgtaaaatatagacTTTAGT---T-AATT-A-AA--TTTGTT--ATA-TTTT-GGGT-T-TTTAA-GT---AAA-----TA------TTAGCATTT---ATA-AACAC---T---TTT--CAA-AATA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTAG-TATCAA--TG--ACGTC-A-TTGAT-CAAA-CTGAT-GATG-TA-ATC-GTTT-ATTGTTAA--AAATTAGATTTTACAAAAGGC-AAT-AA-CTCTT-ATCAATTTATG-TACATT--TATT---AGC-AT-AAA--CATGATTTTCAAG-T--TCGA-TTTATTTCC-TTAAATCA---AATAT--GAATT--TTTTTATT-TTTGCA-TATTTA---AATGAAc
gi|15 : TT-TTTCACTGATG-CACATT--TATT---GGC-AA-AAA--CCTAATTTTTAAACT--TCGA-TTTATTT-CCTTAAATCAA---ATATGACA--T--TTTTTATT-TTTATA-TATTGA---AATGGAAA-TGT-TTTT---AT-CTTTAAAT--TAC-AATAATT--GAAA-ACTT-CACT--G-GGAAT-AGT-TGC--A-TA----A-TTTGTTTT-AA-GTTG-CGT--GTGAA---AATA-GTA--------AATTTT-TGTAA---TGG---T-AAA-ATCAAATA--A-----A-C--CT-GC-C-A----TT-AGAA-----AATGAATAAATGAAA-CAGA-A-CTCAG--AGTTTTG------------TT--
gi|16 : t----TT-AGAA-----AAT-AATAAATAAAA-CAGG-AACTTAG--ATTTTTTTTTTTTTTTTTTTT--TTTG-AATTGAC-AATGA-GTAATAT--A-G----------------TTATA-TT-TTCCA---TCACACAAA-T-TC---AGTA--ATA---ATTAAATAC-T-TTACCGTCA--AAACCTGATA--AC---ATAAGTGC--AAATCTCCTAGAGTT---TTT--CA-A--ACAT-AATATTATTTTCTT--T-ATCT-----AAAA-GAC-T----G-GCTCT--G-TAT--CA----TGGAACTA--------CGT--G--GATGT-------T----C-AA------------------------ACA--TTCA----AA-T-AT--ATAT---AGTAATA-ATCT
gi|17 : A--A---TTGATATAACGTAA-AGGTGC--AAAACTCCTAT---T---TTT--C--A--ACATAAA-GTGA
gi|17 : aA----TG--GCA---------CGA---T-GATAT----TGGT----C-AAA--TAA--CTTACAT---CCA--TACA--TTCA----AG---AT-GA-GC---AGTAATA-GTCTC-TG-AAAA-ATTTC-ATGAAG-A-TT-GGTTGACATG-A-C-TGTCCAACG-----CGATT----TTGAATGC--TT-ACAGA-AATGGCTgagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagatggcacgatgatattggtcaaataacttacatccatacattcaagatgagcagtaatagtctctgaaaaatttcatgaagattggttgacatgactgtccaacgcgattttgaatgcttacagaaatggctctt
gi|18 : aaattgatataacgtaaaggtgcaaaactcctatttttcaacataaagtgagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CCATCATCA--AA--CTAATA--AC---A-AAGTGC--AAAACTCCTAT---T---TTT--C--ACCACAT-AA-G-GAATT--TTA-TAATCT-----AAA--GAA-T----G-GTTCT--GTT--A-CA----TG--ACAA--------CGA--GT-GGTAT----TG-T----CAAAA--TAAC-C--ACAC---CCA--TACA--TTCA----AG-TAAT-GATAT---AGTAATA-TTCTC-TG---AAAATTTC-ATGAAG-ATTT-GG-TGACATG-A-CTT-TCCAA-------CGATT----TTG-ATGC--TT-ACAGAGAATGGCTctt
gi|2 : AAAA-ATATTGTGCAGTGTT-TGTTATTTA-T---TTAATT-A-A---ATTGTT--GTA-TTT--GGTC-T-CTTAA-GT---AAA-----TA------TCTGCA--T---ATA-AACAC---T---TTTTAAAA-AATA-TAT---TTTT-GC----A----CA-TTCTA------GT-TAATTAG-TATTAA--TG--ACGTC-G-TTGAT-C-AAACTGAT-GACG-TCAATC-G-TTTATTGTTAA--AAAGTAG-CTTTACAAAGGGCAAATAAA-CTCTT-GTCTATCTATG-CACCAT--TTAC---AACAAA-AAA--CATA--TTTC--ACT--TCGA--TTATTT-C-
gi|20 : tttgccaccccccctccacttggcgcagtgtatctattactgttattggggggcttagttacagttatttagatgtttgccccctcaccccccctaatttaaagaacagtcctaaacgctatgtttgtttggggggggggttaaggttttgttataggcctagaatcttaaaacagttttcatcaggatctattacactacatatgtatgattattaacaaataaaagttatgttataatttttggaaaactttttcataatcaaggactagaaatttactgtccaatttctcaataaattgtatagatttattaacattttccaaacaatgtaaccttagcctacatcataccaaatcccgttcttacgtatgaattttcattcgatttttttatacacacacaattgcttcttaattctatagatacacacacatatactacacacattctcagtatttgatttctgacagaatttaagaaatgatttcctctttcataagtatcttaacagttgtttagaaaattcgaaaatagccagttgctgtttataatatacaaccgttg-TTAAAT--AT-GACAT---A--T--CTG--ATT-TTCGTA-TTTTTG---AATGAAAAATGT-T-------------AAAT--CAC-AAC---T--GACA-GCTT-CACT--G-AAGAT-AGC-TGC--A-CA----C-CTT---TT-------G-TAT--GTGAA---AATA-GTC--------AATTTTGT--AA---TGG-----AAA-ATCAAATA--T-----ATA--CC-CCGC-A----TT-AAGA-----ATTGAATAAATGAAA-GAGT-A-CTCAG--ATTTTTT------------TTCATC------T-----ATTA-GTA------ACG--TT--T-GTTGCCTTTTACA-TT-CTCTA---Tcga
gi|21 : TT--AAATCATA-TA----TTTTTGCA---ATA--CA-TTCTGCTTTTTGG-TAAATAA-TATAAA--CC--TCA-C-A-TTGAT----AATTCTC-GATG-T-------TTACATTGATTAG-AAACT-G-ATTTACAAAGG-C-A-T-AA-CTCTT-GTCGATATATG-CATATA--TATT---AGC-AC-AAA--CATGATTTTTAAACT--TCGA--TCATTT-C-CT
gi|23 : taaaaattaccctgtcgaatttaAT-CAAA-CTGAT-GATG-TC-ATT-GTTT-ATTGC-CAT-AAATAAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATTTATG-CACTTT--TTTTAAAAGC-AA-AAA--CATGATTTTC-AACT--TCGA-TTta
gi|24 : A-T----G-GCTCT--GTTAC--CA----TG--ACAA--------CGA--GT-GATAT----TG-TTCAAC-AAAT-TAC--C--ACAC---CC---TACATCTTCA----AG-T-AT-CATAT---------------------GAAAATTTC-ATGACGAA-TT-TG-TGa
gi|25 : AA-T-TC---AGAA--TTA---ATTAGATAC-C-CTA-CATCAATA---CTGATA--AC---A-AAGTGC---AAACTCCTA----T---TTT--TCAA--ACAT-AA-GTGAATT--TT--TAATCT-----AAAG-GAA-C----G-ccgttccttt
gi|27 : ATA-CTCCC-TACAAAAAGTTTA-ATCCAA-A-TC-GG-TGACATG-T-CATTTCCAACATTTGCCCATTGTGTTTG-ATGC--TT-ACAGAGAATGACT
gi|29 : CTC-TG-AAAA--TTTC-ATTAAG-A-TT-GA-TGACATATA-ATT-TCCAAC------CTTCT----TTG-ATGC--TG-AGACAGAATGTCTct
gi|3 : AATTAGAACGTCAAAA-ATATTGTGCAGTGTG-TATCATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---ACA-----TA------TTTGCATTT---ATG-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCACATATGCCCA-TTCTA------GT-TAACTAGGTAAAAA--TGG-ACGTC-AGTTGATGCAAAACTGAT-GATGGTC-ATT-GTTTTATTGTTTATCAAATTAT-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATT-ATG-CACTTT--TCTT---AGC-AATCAG--CATGATTTTCAAACT--TCGAGTTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTTGTA-TATTTA---AATGAAAA-TGT-CTA----AT-CTTTAAAT--TAC-AAC---T--GAAC-GCTTTCACT--G-GGAAT-AGC-TG---A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AGTTTT-T--AA---TGG---TAAAA-ATCAAATT--T-----G-A--CA-GC-C-A----TT-AAAA-----AATGAAGAAATG-AA-TA-G-A-TTCAGA-ATTTTTT------------TT--TCAGAAAATGACAAATGATTTAATAA--ATGTTTT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CTAGCATCA--A---CTGATA--A----A-AAGTGC--AAAACT-CTA----T---TTT--C--A--ACAT-AA-GTTGATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTGT--GTTACAGCA----TG--ACAA--------CGA---T-GAT-T----TG-T----C-AAA--TAA--C--ACAC---CCATGTACA--TTCA----AG-T-AT-CATAT---GGTAATA-TTTTC-TG-AAGAAGTTTC-ATGAAA-G-TTGGG-TGACATG-A-CTTGTCCAACT-----TTATT----TTG-ATGC--TT-ACAGAGAACTGCTctta
gi|30 : AAAATTTC-ATGAAG-T-TT-GG-TGACATT-A-CCTATGTAAC------TTATT----TTG-ATGC--TT-ACTGAGAATG
gi|32 : gACATG-A-CTTGTCCAAC------CGATT----TTG-ATGCATTT-ACAGAGAATGGCTc
gi|4 : ATTACAACGTCAAAA-ATATTGTGCAGTGTT-TGTTATTTAGT---T-AATT-A-AA--TTTGTT--GTA-TTTT-GATA-T-CTTAA-GT---AAA-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-AACA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTAG-TATTAA--TG--ACGTC-G-TTGAT-C-AAACTGAT-GATG-TC-ATC-G-TTTATTGTTAA--AAATTAG-CTTTACAAAGGCC-AAT-AA-CTCTT-GTct
gi|5 : ggggcttgctcgacaattcactaacagaggatgttgtgccaccactccccccaattcttaaaaagacagtccttacggcctcatacggtttgggggctcgcttgattgtttattttttatatattaggacctagaaatactaaaccgcttctcaggattctatactagtacacatgatattatcatatttacaaacaataaagttatctcaacattgttggacaagaacttttatcaataggaatcaggactagaaacttatatgtacattattttcatactattatagattgtattactatttcctcacacacatgttacctaatcatactaaaagcgccagttctacgtatcgataattaatatcaatatcgcatttattcttcatacaccacaccacattctcagtaattatttctgacagaatccttctttcaccgctatcttacagttgttgagaaaaatcaaacatagcaagttgctgttaaaatAATTAGAACGTCAAAA-ATATT-TGCAGTTCT-TATTATTTA-T---T-AATT-A-ATTTTTTTTTT-GTATTTTT-GGTG-T-CTTAAGGT---AAA-----TA------T-TGC-TTT----TA-AACACT--T---TTT--AAA-AATA-TAT---TTTT-GCA------------TCTAG-----GT-TAACTAG-TAAAAA--TGACACGTC-ATTTGAT-C-AAACTGAT-GATG-TC-AT--G-TTTATTGTT-AT-CAATTAT-TTTTACAAAGGGC-AA
gi|6 : ggggtgccaagtacctctaaatatgcctatgattatgacatgttttgcatggtccaggttagaatattattgatataccttaatgtacgtagccatttaaaggttggatttttttaatatattttttttaagttgcctcaagccatttaggccttagaattctgaaacagttttcatcaggattctatacatatagtgttgggacaaacttttaaaaattatgaatcacgactaaaatttaagtccaatctctctctaatagattgtatactagactcataactaaatccaaacattgtagactttgctattataccaagttcccattcttcggcattaatcacagattgtattttgagcatgtttctaatagaatttgggaaatcactgtttagtaagtgtagttgcctttcagttgtaaggaaaacctctaaatagtgcaatttgcttatataAG--CATAATTTTTAAA-T--TCGA-TTTATTT-CCTTAAATGAA---ATAT--GA--TAGTTCTGATT-CTTTTA-TAATTA---AATAAAAA-GGT-TTT----AT-CTTTAAAT--TAC-AAT---T--GACT-GC-TTCACT--T-GGAAA-GGT-TGC--A-TAAATTT-TTT---TT-AA-TTTG-TAT--GTGAA---AATA-ATC--------ATTTTT-TTAAA---TGG---T--AA-ATTGAATGTTT-----A-A--CCTGC-C-ATTATTT-AAAA-----GATGAAGAAATAAAA-CAGG---CTCAG--A-TTTCT------------TT--TCAG-AATTGAC-AATGA-GTATTAT--ATA-----------------TATG-TT-TTGCA---TCACTCACA-T-TT---AGTA--AGA---ATTAAATAC-T-CTAGCGTCA--AT--CTGAGA--AC---A-GAGTGG--AAAACTCGTA----T---TTTA-C--C--ACAT-CA-ATGAATT--TT--T-AGCC-----AAAA-GAATT----A-GCCCT--GTTCCA-C---------GCAA----------------GATAT----TG-C----C-AAATTTAC--C--AAAC---TCA--TACA--TCTG----AA-T-AT-GATATTAAAGTAATA-ATCGT-TG---AAAATTTC-ATGAAG-A-TT-GG-TGACATC-A-CCTATGTAAC------C--T---------ATGC--TT-ACTGAGAATGG
gi|7 : AATTAGAACGTCAAAA-ATATTGTGCAGTTTT-TATTATTCA-T---T-AATatctttaaaaatgtttaagatacacgga
gi|8 : gaggtgccaagtacctctaaatatgccattgattatgaccatgttttgcatgtccaggttagatattattgatttaccttacatgacgtacatttaaagagttgtttttttttaaatatattttttttttaaggtttgcctcaagccattaggccctagaattctaaaccaaaaagttttttcaattttcgggggatttttcatatacatatattacaaaataaatggtgtggaccaaacttttaaaaaatcataaatcacgacttaaaatttaagtcatatcttctctaatagcattgtatatatagacttcatttactaaatttcaaacatgtagactttggctatgataccaaagtcccattcttgcgcatatcatatatttgctattttgagatgtttctaacagaatttgggaaatacctgtttagatagtagtttcttttcaattacagggaaatcctaaaagtgcatttgcttatataAT--TAC-AAC---T--GTAC-AGCTTCACTT-G-GGAAT-AGC--GC--A-TA----C-TTT---TTTAA-TTTG-CATTAGTGAATAAAATACGTC--------AATTTT-T--AAAATTGG---T-AAA--TCAAAAA--TTGTGGA-C--CA-GC-C-A----TT-AAAAT----AAAGAAG-AATGAAA-TAGG-A-TTTAG--ATTTTTT------------CA--AGAA-AAATGACAAAT-A-GTAATAC---TG--TT--TATTTaa
gi|8 : aactA-ATATTACGAATA--TTGAT-TTT---TTTTAAACTT-TTACA---TCACACAAAAT-TC---AGAA--TTA---AT-AGATAC-CGCTAGCATCA--AAA-CTGATA--AC---A-AAGTGC--AAA-CTCCTA----T---TTTTTC--A--ACAT-AA-GTGAATT--TT--TTATCT-----AAAG--AA-T----GCGTTCT--GTAAC--CA----TG--ACAA--------CGAAGGT-GATAT----TG-T----C-AAA--CAAACC--ACAC---CCA--TACA--TTCA----AG-T-ATCAATAT---AGTAATAATTTTCATG-AAAA--TTTC-ATGAAG------------CAT------TGTCCAAC------GGATT----TTG-ATGC--TTGACAGAGAATGtcctaatacacctcgttacccgaagttcccgatcccgtgtcctaatattacgaatattgattttttttaaacttttacatcacacaaaattcagaattaatagataccgctagcatcaaaactgataacaaagtgcaaactcctattttttcaacataagtgaattttttatctaaagaatgcgttctgtaaccatgacaacgaaggtgatattgtcaaacaaaccacacccatacattcaagtatcaatatagtaataattttcatgaaaatttcatgaagcattgtccaacggattttgatgcttgacagagaatgctct
gi|9 : aactattacaactgtacagcttcacttgggaatagcgcatacttttttaatttgcattagtgaataaaatacgtcaatttttaaaattggtaaatcaaaaattgtggaccagccattaaaataaagaagaatgaaataggatttagattttttcaagaaaaatgacaaatagtaatactgtttattttcctaatacacctcgttacccgaagttcccgatcccgtgtcctCAAT-AAC-T--C---T--TGTCTATTATGCATT-TACTTAGCAAAT--ACA-TGT-TTTTCTTATTCTTTAAAT--TACAAAC---T--GACA-GC--TCACC--ATGGAATAAGC-TGC--ATTA----CGTTT---TT-AA-TTTGCCAT--GTGAA---AG-A-GCC-------------------------------AAA-ATCAGGTA--T-----A-ACCCA-GT-CAA----TTAAAAA-----AATGAATAGATGAAACCAGG-A-CTAAGATATTTTTT------------TT--TCAG-AAATGAC-AATGA-GT--TAA--ATG---------TTG------ATA--T-TTCAA---TCACTTAAG-TGTCCCTAGAACGGTAATTATTAGATATAC-CTAGC-TC---A---TTGATA--AC---A-AAGTGCAAAAAACTCCTT----T---TTT--T--C--ACAT-AA-GTGAA----TT--T-ATCTAAAAGAAAA-GAA-T----G-TATCT--GTTAC--CA----GG----AA--------CGA--GTAGA-------TG-T----C-CAA--TAA--CT-ACAT---CCA--TACA--TTCA----AG-TAAT-GAT-T---AGTAATA-TTCTC-TG---AAAATTTCAATGAAG-A-TT-GG-TGACATG-ACCTTGTCCAA-------CGA-T----TTG-ATGC--TT-ACAGAGAATGGCTctct
blockSeqs : . G TGGAT T . TTT TT T T T G C G CCG AAATT . T TTAA . TTT CCC GG T G GTTT T CATATGCC . CTTTTT . G AC AG AC C G G A A G G G CT T T A TC A A A . . T . CA . C AAA A AT . A C . GT C C T T GAAT AG A TG . GCA A . TCTT T T . A AAT . AA TTT TG A . . T AATTT GTT T . C TA TAA C . TGT AAT TA . TTGTGGAC CT G A TTAT A T T C AA AT G TTTTTTTTTTTT CA T A T A G T AA CGAATATTGATTTTTT C . . A G CCT CGG ATT A G C G AAAC TA GTA T AA GAGT . CACC A T TC ATA AAAAG A T . C . AG . GA . AGGT . G TCAA A TT CTT . TG TC . TA CA TAA AT A CAA A A AT G . AT C T T ATTTGCCC GTGT . AT G
blockSeqs : . . GTT . . A G . . G . . . . . . A T . T . TA . . ACAA . ATA . G . . TT . G . T . A A T . A C T T A G . . . . . A . CA . A . . A . A C . T . C C T GACA . . TA . . . . T . T . . . . CA CTT AT . . . . CG . . . . . . . . TTA . T . TTTAA T . . . . . T . A A T . . A . A A T . AA AATGTTTTTTTTGTT . . . . . . A . . . T A ATA . . . . T . TCAA . . . TA . G . . . . A . . . GTA . . . . T ACC . . . . TA G . A . AA A . AA . . G . A G TTT . . . .
blockSeqs : . . TTT . . A T . . G . . . . . . C T . . . . . . T . A . . . . TC . . . . . A A . . . C T C A T . . . . . C . CC . A . . T . A C . T . . C T CA . . CG . . . . . . T . . . . AC TT G . . . . A . . . . . . . . GT . T . TAACC C . . . . . T . A . T . . A . T . G . AT ACGTTTGTTGCCTT . . . . . . T . . . G A AAA . . . . T . TTCA . . . TT . G . . . . A . . . GT . . . . . CC . . . . T G . G . AA A . A . . G . T A CG . . . .
blockSeqs : . . GTT . . . T . . G . . . . . . T T . . . . . . T . A . . . . TT . . . . . A A . . . C T T T T . . . . . T . TA . T . . A . A C . T . . C . GA . . TG . . . . . . T . . . . CT TT G . . . . C . . . . . . . . T . T . TATA A . . . . . G . A . T . . A . A . G . AA AATGTTG . . . . . . T . . . G A AA . . . . . . CAA . . . T . A . . . . . . . . GT . . . . . CT . . . . T C . T . AA A . A . . G . T G CT . . . .
blockSeqs : . . TG . . . . . . G . . . . . . C T . . . . . . . . . . . . . TA . . . . . . A . . . T T T C . . . . . . G . CT . A . . A . A C . T . . G . A . . TT . . . . . . . . . . . AC TT G . . . . C . . . . . . . . T . . . AAC A . . . . . G . A . T . . A . A . G . AT TATA . . . . . . T . . . G G AT . . . . . . ACC . . . T . G . . . . . . . . G . . . . . C . . . . T C . C . G A . G . . T . C A TT . . . .
blockSeqs : . . TT . . . . . . A . . . . . . T T . . . . . . . . . . . . . AA . . . . . . A . . . T T T T . . . . . . A . CT . T . . C . . . . . . . C . C . . CA . . . . . . CA T T . . . . C . . . . . . . . . . . . TGA A . . . . . G . A . T . . . . . . . . A TAG . . . . . . A . . . G A A . . . . . . CA . . . T . A . . . . . . . . T . . . . . C . . . . T G . T . . A . T . . G . T G CG . . . .
blockSeqs : . . TT . . . . . . G . . . . . . C . . . . . . . . . . . . . . TT . . . . . . . . . . C . . A . . . . . . A . T . C . . A . . . . . . . . . . . T . . . . . . . . . . . T . . . . . A . . . . . . CA . . . T . . . . . . . . . . T . . . . . C . . . . T G . A . . A . A . . C . C G GG . . . .
blockSeqs : . TT . . . . . . . . . . . . . . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . TC . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . G . T . CG . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . C . . . .
blockSeqCons : TT***** T* ****** A******* T* ** ** ** T* NA**** ** ** NN* G*** ** C***** ** ******** T*** T**** TTAAC******** ***** A** AATGTTGTTT************ *** AA**** *** CA****** T*** G* **** ** **** ******** GT*** **** C**** *** **** T** G* CG******
originalCons : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA---A----CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACAT--CA--T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANC-GCTTTCACT--G-GGAAT-AGC-TGC--A-TA----C-TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTT-T--AA---TGG---T-AAA-ATCAAATA--T-----A-A--CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAN--ATG--TT--T-TTTG--TTTTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCA--A---CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
finalCons : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTATT-----AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCAA-------CA-TTCTA------GT-TAACTAG-TANNAA--TG--ACGTC-A-TTGAT-CAAAACTGAT-GATG-TC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAAT-AACATNA----T--TTTTTATT-TTCGTA-TATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---T--GANN-GCTTTCACTG---GGAAT-AGC-TGC--A-TAC-----TTT---TT-AA-TTTG-CAT--GTGAA---AATA-GTC--------AATTTTT---AA---TGGT----AAA-ATCAAATATTAAC--------CA-GC-C-A----TT-AAAA-----AATGAANAAATGAAA-CAGGA--CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTAAATGTTGTTT------------TTATA-TT-TTCCA---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCAAA----CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTTCA------ACAT-AA-GTGAATT--TTT---ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGAGT---GATAT----TG-T----C-AAA--TAAC----ACAC---CCA--TACA--TTCA----AGT--ATG-ATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAACCG------ATT----TTG-ATGC--TT-ACAGAGAATGGCT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GATGTTTGCCCCACCCCCCCCTAGTTTAAAGCCAGTCCTACGCCTATGTTTGTTTGGGGGGGGGTTATTTTTTATAGGCCTAGAATCTAAACAGTTTCCATCAGGTTCTATTACATACTATGTATTATATATTACAAAATAAAAAGTTATGTTATATTTTGTTGGACATAACTTTTAATCATGAATCAGGACTAGAATTTTATGTCCCAGATTTTCATCTAATAAATTGTATAGATTTTATTACTAATTTTTCAAAGCATGTAACCTTTAGTCCCTACATACCAAAATCCCGTT
Unaligned ( gi|19 ): GGGGTGCCAAGTACTCTAAATATGCCTATGATTATGACCATATGCAGGTGATTTACCTACATATACGTACATTTAAAGGTTTTTTTTTTTAAATATATTTTTTTTAAAGTTTGCCTCAAGCCATTAGGCTAGAAATTCTAAACAGTTTCATCAGGATCTATAAATATACAATGTATATTACAAAATAAAAGTGTTGGACAAACTTCTTAAAAAATCATAAAATCACGACTAAAGTC
Unaligned ( gi|22 ): TTTGCCCCCCTCCCCCTCCACTTTTGGCGAATGTTCTAATACTTTTTTTGTCTTGTCATCACATTACTTAGATGTTTGTCCCCCCCATTTAAAGTCAGTCAGGGACTACGCCTATGTTAGGGGGAGGGGGGTTGTTTATTTTTTATTAGGCCTAGA
Unaligned ( gi|26 ): GGGGTGCCACTACCTCTAAATATAGCCGTATACGTATTTTATGACATGTTTTGCTCTGAATTAGAATATTATTAGTTTACCTTTACGATT
Unaligned ( gi|28 ): TAGAATTTGGGAAATCACTGTTTAGATAGTGTAGTTGCCTTTCAGTTGTAAGGAAAACTTAAATAGTGCAATT
Unaligned ( gi|31 ): CCACCCTCTAAATATACCTATGATTATGACCTTGTTTTGTCTAGATTAGATTGATTGAT
Alignments
lowQualScore : 1111111 111 22 11111 111111 111 11 2222 33333333 111111 1 1 11 1 3333333 111 2222 111 11111 1 1111 222222 111 11 111 222222222 11111 111 11111 222222222 1111 11111 11 2222222222222222 1 666666666666666666666 11 1111 11111111 1111 11111 22 11111111 11111 11 22222 11 111 22222222
lowQualScore : 5 4 3333333 4 4 666 0 44 4 4 2 4 4 4 777 11111 222222 5 9999 4 222 777 11 4 4 5555 4 55555555 4 777777 4 4 22 66 4 66 4 8 4 3 0 8 4 8 66 5 7 5 99 4 4 5 5 4 1 5 5 11 66 1 888 5 55 66 7 3 66 99 0 4 1 99 5 1111111 5 33 5 000 6 6 0000 6 3 77 5 000 5 22222 5 9 5555 5 5 77 5 333333 000 5 5 5 33 000 5 111111111 88888 000 77777 5 999999999 1 5 0000 5 77777 1 999 777 11 0 5555555555555555 1 5 1 5 0 5 22 777777777777777777777 5 5 66 888 5 5 888 777 888 5 5 2 6 1 4 00 66 777 4 66 8888 777 77777777 4 4 66 7777 22222 77 4 9999 4 66 0 66 9999 66 66666666 33333 0 9999 4 9999 8 00 00000 777 66 66 9999 999 22 777 66 4 555 5 4 888 4 4 55 4 3 5 00000000 8888 4 55 4
lowQualScore : . . ....... . . ... . .. . . . . . . ... ..... ...... . .... . ... ... .. . . .... . ........ . ...... . . .. .. . .. . . . . . . . . .. . . . .. . . . . . . . . .. .. . ... . .. .. . . .. .. . . . .. . ....... . .. . ... . . .... . . .. . ... . ..... . . .... . . .. . ...... ... . . . .. ... . ......... ..... ... ..... . ......... . . .... . ..... . ... ... .. . ................ . . . . . . .. ..................... . . .. ... . . ... ... ... . . . . . . .. .. ... . .. .... ... ........ . . .. .... ..... .. . .... . .. . .. .... .. ........ ..... . .... . .... . .. ..... ... .. .. .... ... .. ... .. . ... . . ... . . .. . . . ........ .... . .. .
lowQualScore : 0 4 1111111 4 4 777 1 33 4 4 9 4 4 4 888 11111 888888 4 7777 4 222 888 00 0 0 0000 0 77777777 4 222222 4 4 00 11 4 11 4 9 0 0 6 0 0 0 33 7 2 3 99 4 4 0 0 4 0 1 0 22 99 0 888 0 22 11 3 9 11 00 0 4 4 99 7 0000000 7 11 7 000 7 7 8888 7 2 99 7 000 7 00000 0 0 1111 7 7 99 7 999999 000 7 7 7 66 000 7 000000000 00000 000 11111 7 000000000 9 7 6666 0 55555 0 111 111 99 1 8888888888888888 7 7 9 4 7 0 99 555555555555555555555 0 0 99 888 0 0 888 999 888 0 0 5 2 9 4 66 11 888 4 11 3333 888 11111111 4 4 99 9999 55555 22 4 4444 4 99 1 66 4444 11 11111111 66666 8 4444 4 4444 9 66 00000 888 11 11 4444 888 99 888 55 4 111 7 0 000 0 0 66 0 9 7 22222222 5555 0 55 0
consensus : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA-A------CA-TTCTA------GT-TAACTA-GTANNAA--T-G--ACGTC-A-TTGAT-CAAAACTGAT-GAT-GTC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAATAA-CATNA--T--TTTTTATT-TTCGTAT-ATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---TG-ACA---GCTTTCACT-G--GGAAT-AGC-TGC--A-TA----C-TTT---TT-AATTT-G-CAT--GTGAA---AATA-GTCA--------ATTTT--T--AA---TGG---T-AAA-ATCAAATA-T-TA---ACCAGCC-A----TT-AAAA-----AATGAANAAATGAAA-C-AGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTAATA--NATGTTG----T-----TTTTATA-TT-TTCC--A---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCAA-A--CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
Reference ( family-4150 ) : AATTAGAACGTCAAAA-ATATTGTGCAGTGTT-TATTATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---AAA-----TA------TCTGCATTT---ATA-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCA-A------CA-TTCTA------GT-TAACTA-GTANNAA--T-G--ACGTC-A-TTGAT-CAAAACTGAT-GAT-GTC-ATC-GTTTTATTGTTNAT-AAATTAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCNATTTATG-CACNTT--TNTT---AGC-AA-AAA--CATGATTTTCAAACT--TCGA-TTTATTT-C-TTAAATCAATAA-CATNA--T--TTTTTATT-TTCGTAT-ATTTA---AATGAAAA-TGT-TTT----AT-CTTTAAAT--TAC-AAC---TG-ANN---GCTTTCACT-G--GGAAT-AGC-TGC--A-TA----C-TTT---TT-AATTT-G-CAT--GTGAA---AATA-GTCA--------ATTTT--T--AA---TGG---T-AAA-ATCAAATA-T-TA---ACCAGCC-A----TT-AAAA-----AATGAANAAATGAAA-C-AGG-A-CTCAG--ATTTTTT------------TT--TCAG-AAATGACAAATGA-GTANTA--AATGTTG----T-----TTTTATA-TT-TTCC--A---TCACACAAA-T-TC---AGAA--NTA---ATTAGATAC-C-CTAGCGTCAA-A--CTGATA--AC---A-AAGTGC--AAAACTCCTA----T---TTT--C--A--ACAT-AA-GTGAATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTCT--GTTACA-CA----TG--ACAA--------CGA--GT-GATAT----TG-T----C-AAA--TAA--C--ACAC---CCA--TACA--TTCA----AG-T-AT-GATAT---AGTAATA-TTCTC-TG-AAAAAATTTC-ATGAAG-A-TT-GG-TGACATG-A-CTTGTCCAAC------CGATT----TTG-ATGC--TT-ACAGAGAATGGCT
gi|1 : CAATGTT--ATTATTTA-T-----ATTT-ACA---TTTATTTTGTA-TTTT-GTTT-T-TCTAA-GT---TAA-----CACTGAAATTTG-ACTT---GTATAACAC---T---TTT--AAA-TATT-TA----TTTT--TG-A------CAATTCTA------GTCTAACTA-GTAAAAT--T-G--ACGTC-A-TTGGT-CAAA-CTGAT-GAT-GTC-ATT-GTATTAAT-TTTAT-CAATTAT-TTTTACAAAGGGC-AAT-AAACTCTTTGTAATTTTATGTCATTTTAACCTT---TGC-CC-AATTTCATAATTT-CAAACTAATCGA-TTTATTT-C-CGTAATCAATAAACACT---T--TTTTTATT-TTGATATTATTTA---AATGAAAA-TGTCTTT----AT-CT--GGATGGTGG-ACG---TG-GGATCAGCTT--ACT-GCGGAAAT-AGCATGCTGG-TGGT--T-TTT---TT-AATTTTG-CATC-GTGAA---AATG-GTCATTTTTAGAATTTT--C--AA---TGGGTTT-AAAGATCAGATG--------ACCAGCC-A----TT-AAGATAATTGATGATGAAATGAAA-TTAGGCA-CTCAG--ATTTTTT------------T----CAG-AAATGACAAATG---TCGTA--TATGTT-------------TTATA-TTGTTCC--AATTTCACACAAA-T-TC---ATGA--ATA---ATTAGATAC-C-CTAGCATCAT-A--CTGATA--AC---C-AAATGC--AAAACTCCTA----TTGATCT--C--A--ACAA-AC-GTG-ATT--TTAAT-ATTA-----AAAGCGAA-GAGGAG-GCTCTCCCTTAC--CAAGGTCG--ACAACTGAAATTCGA--GT-TACACTCTGTG-T----CAAAA--TAA--CCGACGCCGGCCA--TA-----TCAGCATAGTT-AT--ATAT---AGTAATA-TT
gi|10 : gttgaatagtagatgataagtttgtattatcagttcttcatggcaaagatcctaaatcgtgtacaatttgctttatataaatttagaacgctccagaaaatattgtttgctagtgatgtaaactgtgctggaaattttactcacAAAACTTTAAAAGATACTGTGCAA-ATT-TATCATTTA-T---G-AATTTA-A---TTTTTTG-GTA-TCTT-G--T-T-TCAAA-GTCCGAGT-----TA------TTTGCATTT---ATA-AACACTTTT---TTT--AAA-AACAGTAGTTTTTTT-GCA-gtaggtgtctggggatagtgattcgagttgtacatgacagtgtcaaccgccatatcacgttgagtgcttagcggggaggtgc
gi|11 : tactacttatcggtacattaaagctgggttttttaatttttttttaaaagttgcctcaagccatataggctagaattctaaaatagtttcacaagacatgtctatcattatattacaaaaaaagttcagttatgatattgtaggacaacgtttaaaaaaattcatgaatcaaccacagaagtacttcagatttctctgataaattgtatagatttcattactatttcaaaagtagaacttaggctatcatataccaaatcgtgtctttcgcaattgattattcattctattctcccaacatatttaggatatatgaagaggaaacatgcatagaaggcaagttgcttatacaaaatag-ATGTTGT----TATT-AAATATTTA-TGGAT-AGCT-A-A---TTTTTTTTGTA-TTTT-ATTTGT-TTTAA-GT---AAAAAATTTA------TATGCATTTTAAACC-AACAC---TCCCTCTGGAGA-AATA-TAACAATTTT-GCA--------CA-TTCTA------GT-TAACTA-GTAACAAAGT-G--ACGTC-A-TTGAT-C-AGACTGATGGAT-GTCGATCTGTTTTGT
gi|12 : tgagatgttcataaacaacagaatttggggcaatcactgattagaatacttatttaagatatattttcttacagtgcatgtatgctatttgaaccacacgagtcctaattaaaatctgcatattatgcttatataaaagtttagaaacgaatgaatattcaaaatactttggcaagggaatggAACGTCGAAA--TATTGTGCAGTGTTGTATTATT---------AATT-A-A---ATTGTT--GTA-TTTTTGGTC-TCTTTAA-GG---AAC-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-GA-A-TA----TTTC-----A------CA-TTCTA------GT-TAATTT-ATATTAA--T-G--ACGTCCA-TTGAT-CAAA-CTGATTGAT-GTC-ATC-GTTT-ATTGTTAA---AAT--G-CTTAACAAAGGGC-AAT-AA-CTCTT-GTCTA-TTATG-CA-TTT--ACTT---AGC-AA-ATA--CATGTTTTTC-------------TTATTC-T-TTAAATTA
gi|14 : tacacccacatactcagtaattatttctgacaggaatttaaaataattccttctttcacaggtatcttacagttgttgagataattcgaactgagcagttgttgtaaaatatagacTTTAGT---T-AATT-A-AA--TTTGTT--ATA-TTTT-GGGT-T-TTTAA-GT---AAA-----TA------TTAGCATTT---ATA-AACAC---T---TTT--CAA-AATA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTA-GTATCAA--T-G--ACGTC-A-TTGAT-CAAA-CTGAT-GAT-GTA-ATC-GTTT-ATTGTTAA--AAATTAGATTTTACAAAAGGC-AAT-AA-CTCTT-ATCAATTTATG-TACATT--TATT---AGC-AT-AAA--CATGATTTTCAAG-T--TCGA-TTTATTTCC-TTAAATCA--AA-TATGAATT--TTTTTATT-TTTGCAT-ATTTA---AATGAAc
gi|15 : TT-TTTCACTGATG-CACATT--TATT---GGC-AA-AAA--CCTAATTTTTAAACT--TCGA-TTTATTT-CCTTAAATCAA--A-TATGACAT--TTTTTATT-TTTATAT-ATTGA---AATGGAAA-TGT-TTTT---AT-CTTTAAAT--TAC-AATAATTG-AAA---ACTT-CACT-G--GGAAT-AGT-TGC--A-TA----A-TTTGTTTT-AAGTT-G-CGT--GTGAA---AATA-GTAA--------ATTTTTGT--AA---TGG---T-AAA-ATCAAATA----A---ACCTGCC-A----TT-AGAA-----AATGAATAAATGAAA-C-AGA-A-CTCAG--AGTTTTG------------TT--
gi|16 : t----TT-AGAA-----AAT-AATAAATAAAA-C-AGG-AACTTAG--ATTTTTTTTTTTTTTTTTTTT--TTTG-AATTGAC-AATGA-GTAATA--TA-G---------------TTATA-TT-TTCC--A---TCACACAAA-T-TC---AGTA--ATA---ATTAAATAC-T-TTACCGTCAA-AACCTGATA--AC---ATAAGTGC--AAATCTCCTAGAGTT---TTT--CA-A--ACAT-AATATTATTTTCTT--T-ATCT-----AAAA-GAC-T----G-GCTCT--G-TAT--CA----TGGAACTA--------CGT--G--GATGT-------T----C-AA------------------------ACA--TTCA----AA-T-AT--ATAT---AGTAATA-ATCT
gi|17 : AA-A--TTGATATAACGTAA-AGGTGC--AAAACTCCTAT---T---TTT--C--A--ACATAAA-GTGA
gi|17 : A----TG--GCA---------CGA---T-GATAT----TGGT----C-AAA--TAA--CTTACAT---CCA--TACA--TTCA----AG---AT-GA-GC---AGTAATA-GTCTC-TG-AAAA-ATTTC-ATGAAG-A-TT-GGTTGACATG-A-C-TGTCCAACG-----CGATT----TTGAATGC--TT-ACAGA-AATGGCTgagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagatggcacgatgatattggtcaaataacttacatccatacattcaagatgagcagtaatagtctctgaaaaatttcatgaagattggttgacatgactgtccaacgcgattttgaatgcttacagaaatggctctt
gi|18 : aaattgatataacgtaaaggtgcaaaactcctatttttcaacataaagtgagagaagtcaaaagtagaagaaagacactagacattcgtatcggcaaagaaaaagctggtagACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CCATCATCAA-A--CTAATA--AC---A-AAGTGC--AAAACTCCTAT---T---TTT--C--ACCACAT-AA-G-GAATT--TTA-TAATCT-----AAA--GAA-T----G-GTTCT--GTT--A-CA----TG--ACAA--------CGA--GT-GGTAT----TG-T----CAAAA--TAAC-C--ACAC---CCA--TACA--TTCA----AG-TAAT-GATAT---AGTAATA-TTCTC-TG---AAAATTTC-ATGAAG-ATTT-GG-TGACATG-A-CTT-TCCAA-------CGATT----TTG-ATGC--TT-ACAGAGAATGGCTctt
gi|2 : AAAA-ATATTGTGCAGTGTT-TGTTATTTA-T---TTAATT-A-A---ATTGTT--GTA-TTT--GGTC-T-CTTAA-GT---AAA-----TA------TCTGCA--T---ATA-AACAC---T---TTTTAAAA-AATA-TAT---TTTT-GC--A------CA-TTCTA------GT-TAATTA-GTATTAA--T-G--ACGTC-G-TTGAT-C-AAACTGAT-GAC-GTCAATC-G-TTTATTGTTAA--AAAGTAG-CTTTACAAAGGGCAAATAAA-CTCTT-GTCTATCTATG-CACCAT--TTAC---AACAAA-AAA--CATA--TTTC--ACT--TCGA--TTATTT-C-
gi|20 : tttgccaccccccctccacttggcgcagtgtatctattactgttattggggggcttagttacagttatttagatgtttgccccctcaccccccctaatttaaagaacagtcctaaacgctatgtttgtttggggggggggttaaggttttgttataggcctagaatcttaaaacagttttcatcaggatctattacactacatatgtatgattattaacaaataaaagttatgttataatttttggaaaactttttcataatcaaggactagaaatttactgtccaatttctcaataaattgtatagatttattaacattttccaaacaatgtaaccttagcctacatcataccaaatcccgttcttacgtatgaattttcattcgatttttttatacacacacaattgcttcttaattctatagatacacacacatatactacacacattctcagtatttgatttctgacagaatttaagaaatgatttcctctttcataagtatcttaacagttgtttagaaaattcgaaaatagccagttgctgtttataatatacaaccgttg-TTAAAT--ATGA-CATA-------TCTGATT-TTCGTAT-TTTTG---AATGAAAAATGT-T-------------AAAT--CAC-AAC---TG-ACA---GCTT-CACT-G--AAGAT-AGC-TGC--A-CA----C-CTT---TT-------G-TAT--GTGAA---AATA-GTCA--------ATTTTG-T--AA---TGG-----AAA-ATCAAATA-TATA---CCCCG-C-A----TT-AAGA-----ATTGAATAAATGAAA-G-AGT-A-CTCAG--ATTTTTT------------TTCATC------T-----ATTA-GTAACG--TTTGTTGC---C-----TTTTACA-TT-CTCT--A---Tcga
gi|21 : TT--AAATCATA-TA----TTTTTGCA-ATA----CA-TTCTGCTTTTTGG-TAAATA-ATATAAA--C-C--TCA-C-A-TTGAT----AATTCTC-GAT-GT-------TTACATTGATTAG-AAACT-G-ATTTACAAAGG-C-A-T-AA-CTCTT-GTCGATATATG-CATATA--TATT---AGC-AC-AAA--CATGATTTTTAAACT--TCGA--TCATTT-C-CT
gi|23 : taaaaattaccctgtcgaatttaAT-CAAA-CTGAT-GAT-GTC-ATT-GTTT-ATTGC-CAT-AAATAAG-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAATTTATG-CACTTT--TTTTAAAAGC-AA-AAA--CATGATTTTC-AACT--TCGA-TTta
gi|24 : A-T----G-GCTCT--GTTAC--CA----TG--ACAA--------CGA--GT-GATAT----TG-TTCAAC-AAAT-TAC--C--ACAC---CC---TACATCTTCA----AG-T-AT-CATAT---------------------GAAAATTTC-ATGACGAA-TT-TG-TGa
gi|25 : AA-T-TC---AGAA--TTA---ATTAGATAC-C-CTA-CATCAATA--CTGATA--AC---A-AAGTGC---AAACTCCTA----T---TTT--TCAA--ACAT-AA-GTGAATT--TT--TAATCT-----AAAG-GAA-C----G-ccgttccttt
gi|27 : ATA-CTCCC-TACAAAAAGTTTA-ATCCAA-A-TC-GG-TGACATG-T-CATTTCCAACATTTGCCCATTGTGTTTG-ATGC--TT-ACAGAGAATGACT
gi|29 : CTC-TG-AAAA--TTTC-ATTAAG-A-TT-GA-TGACATATA-ATT-TCCAAC------CTTCT----TTG-ATGC--TG-AGACAGAATGTCTct
gi|3 : AATTAGAACGTCAAAA-ATATTGTGCAGTGTG-TATCATTTA-T---T-AATT-A-A---TTTGTTT-GTA-TTTT-GGTT-T-TTTAA-GT---ACA-----TA------TTTGCATTT---ATG-AACAC---T---TTT--AAA-AATA-TA----TTTT-GCACATATGCCCA-TTCTA------GT-TAACTAGGTAAAAA--TGG--ACGTC-AGTTGATGCAAAACTGAT-GATGGTC-ATT-GTTTTATTGTTTATCAAATTAT-TTTTACAAAGGGC-AAT-AA-CTCTT-GTCAA-TTATG-CACTTT--TCTT---AGC-AATCAG--CATGATTTTCAAACT--TCGAGTTTATTT-C-TTAAATCAATAA-CATCA--T--TTTTTATT-TTTGTAT-ATTTA---AATGAAAA-TGT-CTA----AT-CTTTAAAT--TAC-AAC---TG-AAC---GCTTTCACT-G--GGAAT-AGC-TG---A-TA----C-TTT---TT-AATTT-G-CAT--GTGAA---AATA-GTCA--------GTTTT--T--AA---TGG---TAAAA-ATCAAAT--T-TG---A-CAGCC-A----TT-AAAA-----AATGAAGAAATG-AA-T-A-G-A-TTCAGA-ATTTTTT------------TT--TCAGAAAATGACAAATGATTTAATA--AATGTTT----TTTTTGTTTTATA-TT-TTCC--A---TCACACAAA-T-TC---AGAA--TTA---ATTAGATAC-C-CTAGCATC-A-A--CTGATA--A----A-AAGTGC--AAAACT-CTA----T---TTT--C--A--ACAT-AA-GTTGATT--TT--T-ATCT-----AAAG-GAA-T----G-GCTGT--GTTACAGCA----TG--ACAA--------CGA---T-GAT-T----TG-T----C-AAA--TAA--C--ACAC---CCATGTACA--TTCA----AG-T-AT-CATAT---GGTAATA-TTTTC-TG-AAGAAGTTTC-ATGAAA-G-TTGGG-TGACATG-A-CTTGTCCAACT-----TTATT----TTG-ATGC--TT-ACAGAGAACTGCTctta
gi|30 : AAAATTTC-ATGAAG-T-TT-GG-TGACATT-A-CCTATGTAAC------TTATT----TTG-ATGC--TT-ACTGAGAATG
gi|32 : gACATG-A-CTTGTCCAAC------CGATT----TTG-ATGCATTT-ACAGAGAATGGCTc
gi|4 : ATTACAACGTCAAAA-ATATTGTGCAGTGTT-TGTTATTTAGT---T-AATT-A-AA--TTTGTT--GTA-TTTT-GATA-T-CTTAA-GT---AAA-----TA------TCTGCATT----ATA-AACAC---T---TTT--AAA-AACA-TA----TTTT-GCA--------CA-TTCTA------GT-TAATTA-GTATTAA--T-G--ACGTC-G-TTGAT-C-AAACTGAT-GAT-GTC-ATC-G-TTTATTGTTAA--AAATTAG-CTTTACAAAGGCC-AAT-AA-CTCTT-GTct
gi|5 : ggggcttgctcgacaattcactaacagaggatgttgtgccaccactccccccaattcttaaaaagacagtccttacggcctcatacggtttgggggctcgcttgattgtttattttttatatattaggacctagaaatactaaaccgcttctcaggattctatactagtacacatgatattatcatatttacaaacaataaagttatctcaacattgttggacaagaacttttatcaataggaatcaggactagaaacttatatgtacattattttcatactattatagattgtattactatttcctcacacacatgttacctaatcatactaaaagcgccagttctacgtatcgataattaatatcaatatcgcatttattcttcatacaccacaccacattctcagtaattatttctgacagaatccttctttcaccgctatcttacagttgttgagaaaaatcaaacatagcaagttgctgttaaaatAATTAGAACGTCAAAA-ATATT-TGCAGTTCT-TATTATTTA-T---T-AATT-A-ATTTTTTTTTT-GTATTTTT-GGTG-T-CTTAAGGT---AAA-----TA------T-TGC-TTT----TA-AACACT--T---TTT--AAA-AATA-TAT---TTTT-GCA------------TCTAG-----GT-TAACTA-GTAAAAA--T-GACACGTC-ATTTGAT-C-AAACTGAT-GAT-GTC-AT--G-TTTATTGTT-AT-CAATTAT-TTTTACAAAGGGC-AA
gi|6 : ggggtgccaagtacctctaaatatgcctatgattatgacatgttttgcatggtccaggttagaatattattgatataccttaatgtacgtagccatttaaaggttggatttttttaatatattttttttaagttgcctcaagccatttaggccttagaattctgaaacagttttcatcaggattctatacatatagtgttgggacaaacttttaaaaattatgaatcacgactaaaatttaagtccaatctctctctaatagattgtatactagactcataactaaatccaaacattgtagactttgctattataccaagttcccattcttcggcattaatcacagattgtattttgagcatgtttctaatagaatttgggaaatcactgtttagtaagtgtagttgcctttcagttgtaaggaaaacctctaaatagtgcaatttgcttatataAG--CATAATTTTTAAA-T--TCGA-TTTATTTCC-TTAAATGA--AA-TATGA--TAGTTCTGATT-CTTTTAT-AATTA---AATAAAAA-GGT-TTT----AT-CTTTAAAT--TAC-AAT---TG-ACT---GC-TTCACT-T--GGAAA-GGT-TGC--A-TAAATTT-TTT---TT-AATTT-G-TAT--GTGAA---AATA-ATCA--------TTTTT--TTAAA---TGG---T--AA-ATTGAATGTT-TA---ACCTGCC-ATTATTT-AAAA-----GATGAAGAAATAAAA-C-AGG---CTCAG--A-TTTCT------------TT--TCAG-AATTGAC-AATGA-GTATTA--TATA----------------TATG-TT-TTGC--A---TCACTCACA-T-TT---AGTA--AGA---ATTAAATAC-T-CTAGCGTCAA-T--CTGAGA--AC---A-GAGTGG--AAAACTCGTA----T---TTTA-C--C--ACAT-CA-ATGAATT--TT--T-AGCC-----AAAA-GAATT----A-GCCCT--GTTCCA-C---------GCAA----------------GATAT----TG-C----C-AAATTTAC--C--AAAC---TCA--TACA--TCTG----AA-T-AT-GATATTAAAGTAATA-ATCGT-TG---AAAATTTC-ATGAAG-A-TT-GG-TGACATC-A-CCTATGTAAC------C--T---------ATGC--TT-ACTGAGAATGG
gi|7 : AATTAGAACGTCAAAA-ATATTGTGCAGTTTT-TATTATTCA-T---T-AATatctttaaaaatgtttaagatacacgga
gi|8 : gaggtgccaagtacctctaaatatgccattgattatgaccatgttttgcatgtccaggttagatattattgatttaccttacatgacgtacatttaaagagttgtttttttttaaatatattttttttttaaggtttgcctcaagccattaggccctagaattctaaaccaaaaagttttttcaattttcgggggatttttcatatacatatattacaaaataaatggtgtggaccaaacttttaaaaaatcataaatcacgacttaaaatttaagtcatatcttctctaatagcattgtatatatagacttcatttactaaatttcaaacatgtagactttggctatgataccaaagtcccattcttgcgcatatcatatatttgctattttgagatgtttctaacagaatttgggaaatacctgtttagatagtagtttcttttcaattacagggaaatcctaaaagtgcatttgcttatataAT--TAC-AAC---TGTACA---GCTT-CACTTG--GGAAT-AGC--GC--A-TA----C-TTT---TTTAATTT-G-CATTAGTGAATAAAATACGTCA--------ATTTT--T--AAAATTGG---T-AAA--TCAAAAA-T-TGTGGACCAGCC-A----TT-AAAAT----AAAGAAG-AATGAAA-T-AGG-A-TTTAG--ATTTTTT------------CA--AGAA-AAATGACAAAT-A-GTAATA------CTG----T-----T----TA-TT-TTCCTAA---T-ACACaa
gi|8 : aactA-ATATTACGAATATTGATTTT-----TTTTAAACTT-TTAC--A---TCACACAAAAT-TC---AGAA--TTA---AT-AGATAC-CGCTAGCATCAA-AA-CTGATA--AC---A-AAGTGC--AAA-CTCCTA----T---TTTTTC--A--ACAT-AA-GTGAATT--TT--TTATCT-----AAAG--AA-T----GCGTTCT--GTAAC--CA----TG--ACAA--------CGAAGGT-GATAT----TG-T----C-AAA--CAAACC--ACAC---CCA--TACA--TTCA----AG-T-ATCAATAT---AGTAATAATTTTCATG-AAAA--TTTC-ATGAAG------------CAT------TGTCCAAC------GGATT----TTG-ATGC--TTGACAGAGAATGctcgttacccgaagttcccgatcccgtgtcctaatattacgaatattgattttttttaaacttttacatcacacaaaattcagaattaatagataccgctagcatcaaaactgataacaaagtgcaaactcctattttttcaacataagtgaattttttatctaaagaatgcgttctgtaaccatgacaacgaaggtgatattgtcaaacaaaccacacccatacattcaagtatcaatatagtaataattttcatgaaaatttcatgaagcattgtccaacggattttgatgcttgacagagaatgctct
gi|9 : aactattacaactgtacagcttcacttgggaatagcgcatacttttttaatttgcattagtgaataaaatacgtcaatttttaaaattggtaaatcaaaaattgtggaccagccattaaaataaagaagaatgaaataggatttagattttttcaagaaaaatgacaaatagtaatactgtttattttcctaatacacctcgttacccgaagttcccgatcccgtgtcctCAATAA-C-TC---T--TGTCTATTATGCATTT-ACTTAGCAAAT--ACA-TGT-TTTTCTTATTCTTTAAAT--TACAAAC---TG-ACA---GC--TCACC-AT-GGAATAAGC-TGC--ATTA----CGTTT---TT-AATTT-GCCAT--GTGAA---AG-A-GCC--------------------------------AAA-ATCAGGTA-T-AA---CCCAGTCAA----TTAAAAA-----AATGAATAGATGAAACC-AGG-A-CTAAGATATTTTTT------------TT--TCAG-AAATGAC-AATGA-GT--TA--AATGTTG--------------ATA--T-TTCA--A---TCACTTAAG-TGTCCCTAGAACGGTAATTATTAGATATAC-CTAGC-TC---A--TTGATA--AC---A-AAGTGCAAAAAACTCCTT----T---TTT--T--C--ACAT-AA-GTGAA----TT--T-ATCTAAAAGAAAA-GAA-T----G-TATCT--GTTAC--CA----GG----AA--------CGA--GTAGA-------TG-T----C-CAA--TAA--CT-ACAT---CCA--TACA--TTCA----AG-TAAT-GAT-T---AGTAATA-TTCTC-TG---AAAATTTCAATGAAG-A-TT-GG-TGACATG-ACCTTGTCCAA-------CGA-T----TTG-ATGC--TT-ACAGAGAATGGCTctct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GATGTTTGCCCCACCCCCCCCTAGTTTAAAGCCAGTCCTACGCCTATGTTTGTTTGGGGGGGGGTTATTTTTTATAGGCCTAGAATCTAAACAGTTTCCATCAGGTTCTATTACATACTATGTATTATATATTACAAAATAAAAAGTTATGTTATATTTTGTTGGACATAACTTTTAATCATGAATCAGGACTAGAATTTTATGTCCCAGATTTTCATCTAATAAATTGTATAGATTTTATTACTAATTTTTCAAAGCATGTAACCTTTAGTCCCTACATACCAAAATCCCGTT
Unaligned ( gi|19 ): GGGGTGCCAAGTACTCTAAATATGCCTATGATTATGACCATATGCAGGTGATTTACCTACATATACGTACATTTAAAGGTTTTTTTTTTTAAATATATTTTTTTTAAAGTTTGCCTCAAGCCATTAGGCTAGAAATTCTAAACAGTTTCATCAGGATCTATAAATATACAATGTATATTACAAAATAAAAGTGTTGGACAAACTTCTTAAAAAATCATAAAATCACGACTAAAGTC
Unaligned ( gi|22 ): TTTGCCCCCCTCCCCCTCCACTTTTGGCGAATGTTCTAATACTTTTTTTGTCTTGTCATCACATTACTTAGATGTTTGTCCCCCCCATTTAAAGTCAGTCAGGGACTACGCCTATGTTAGGGGGAGGGGGGTTGTTTATTTTTTATTAGGCCTAGA
Unaligned ( gi|26 ): GGGGTGCCACTACCTCTAAATATAGCCGTATACGTATTTTATGACATGTTTTGCTCTGAATTAGAATATTATTAGTTTACCTTTACGATT
Unaligned ( gi|28 ): TAGAATTTGGGAAATCACTGTTTAGATAGTGTAGTTGCCTTTCAGTTGTAAGGAAAACTTAAATAGTGCAATT
Unaligned ( gi|31 ): CCACCCTCTAAATATACCTATGATTATGACCTTGTTTTGTCTAGATTAGATTGATTGAT