lowQualScore : 1111111111111111111111111111111 111111111111111111111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111 1111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 4 3333333333333333333333333333333 55 111111111111111111111111111 4 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 444444 22 1 11 33333 2 111 11 33333333333 1 1 11 1 5555555555555555555555555555555555555555555555 2222 5555555555555555555 111 2222 1 2222 1 2222 1 1111 888888888888888888888888888888888888 2222222222222 1 1 11 33333333 1 222222 1 1111111 11 1 33333333333 22222222 1 11111 11 33333333333 1 11 1 1 1111111111 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111111111111 11 33333333333 2 999999999999999999999999999999999999999999 111111 666 11 22 11 3333
lowQualScore : 0 6666666666666666666666666666666 55 888888888888888888888888888 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 111111 22 3 7 88 44444 6 666 88 99999999999 3 3 88 0 6 3 6666666666666666666666666666666666666666666666 1 8888 7777777777777777777 999 8888 3 6 8888 3 7 9999 0 4 0 3333 777777777777777777777777777777777777 3 0000000000000 0 0 33 33333333 0 33 99 0 888888 7 0 7777777 33 2 0 8 0 00000000000 8 33333333 0 88888 33 22222222222 0 33 0 0 4444444444 6 6 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 0 555555555555 00 66666666666 4 8 8 666666666666666666666666666666666666666666 111111 6 222 88 6 9 8888 44 66 6 77 3333
lowQualScore : . ............................... .. ........................... . ................................................................................................................................................................... .................................................................................................................................................................................................. . ...... .. . . .. ..... . ... .. ........... . . .. . . . .............................................. . .... ................... ... .... . . .... . . .... . . . .... .................................... . ............. . . .. ........ . .. .. . ...... . . ....... .. . . . . ........... . ........ . ..... .. ........... . .. . . .......... . . . ....................................................................................................................................................................................................................................... . . ............ .. ........... . . . .......................................... ...... . ... .. . . .... .. .. . .. ....
lowQualScore : 0 0000000000000000000000000000000 00 000000000000000000000000000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 333333 77 3 3 33 00000 7 333 33 33333333333 3 3 33 7 7 3 7777777777777777777777777777777777777777777777 0 3333 0000000000000000000 000 3333 3 0 3333 3 3 8888 0 2 2 5555 333333333333333333333333333333333333 2 0000000000000 0 0 88 22222222 0 88 00 2 888888 0 0 2222222 88 5 0 0 8 00000000000 0 88888888 0 55555 88 22222222222 0 88 0 0 8888888888 0 0 3 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 666666666666 88 88888888888 0 0 0 111111111111111111111111111111111111111111 888888 7 555 33 7 2 3333 33 33 7 77 5555
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAAT-ATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACAT-CAATTTAAATCCCNCTCTATGCTCNCCTAATAACAATAGNAT---CTTAA-TGCAGG--TAAAATCA-------AAATCTCCAAAT-TATCT-T--T-ACTTT----GGAGCCAGA-CTCGG-ACGAACTA--TTC-AT-GCTA-AA----TT---AAGA-----TANAA-CTGTAGTGCTCT----T-AATCT-CATATGT-TTCAAAG--AAA--ATCGTGTAAATTC-ACCTCTTC--GTA---T-T--TG-TGGAG-AA-GTT--GAAAGTAC-TGAG------CGTTTT-TTTNNCACTGAGTATCACNCNAAGAATTACTCTAGAGTTAGGAGC----AATACAATA----CTG--ACA--CTT-CACATCA-ACTC----AAT-GTAGAATTATTGTT----ATATGGT-AAGGATAATTTATCC--GA-AAACGGAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CTTTG-TCGATGCTCAA------TTACG-TAAATAAC-TGATNTATTGTATAG--CACCCGGG-TGTA-ATAA-----G-----AACA-AAA-C----CTATA-TTTGT--T--TA--TATA-TA------CTT-CA--AC-ATTGTC-TATTGTTCA-----TNTATCTATGTGATCTGTATTTTTCTACTATG-TATACAT-GGATCAGCAGGTTCTCAGCAATAGGGTCTACANTACTATATTTTNTATTGTNTAG-AAC--C-GGG----TGTAAT-GATTACAAAACCTATATTTGCTTACATA---ACTTCAACA--NTGTNTATTGTTT-TA----TT-AC-C--TCAGTATAT---N-TATANT-TCGAAACTGCATTTGCNTGTATT-TGATCTACATTTACCTCATTATTAAGTTGTGAACTATTTGTTTTANGT-TCAA---C-A-C-TTTAGTA-TTTGT----GTGTAC-TATTTGTTTTAGCACT-CA-ATTCCAG---NATCACC----ATT-CCCCCTTTCATTTACNT--T-TATCTC---T--CTT-GTAGCACGCAGAGA--GCGAG--A-TTGATATAA-GC-CTTTTGGC-TTGTTT-CTCAA--TCTTTAAAATG
Reference ( gi|1 ) : TCGATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGA-----ACAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA--A-AACAT---CTTGA-TGCAGG--TAGAATCA-------AAATCTCAAAAT-TATTT-T--T-ACTT----AGGAGCCAGA-TTCCG-ACAAACTA--TTC-AT-GCTA-AA----TT---AAGAA----TAGAA--TGTAGTGCTAT----T-AATCTTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTC-AGCTCTTT--GTA---T-T--TG-TGGAG-AA-GTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCTG--TATTATATTA-----TACTCTAGAGTTAGAAGC----AATACAATC----CTG--ACA--CTAACACATCA-ACTC----AAT-GTAGAGTTATTGTT----ATATGGT-AAGGATAATTTATAT--GA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAA------TTACG-TAAATAAG-TGGTATATTGTATAG--CACCCGGG-TGTA-ATAA-----G-----AACA-AAA-C----CAATA-TTTGT--T--TA--TACA-TA------CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACAT-A-------------T--AC---A-----TACATTACTGTA----ATATTGTATAG-AAC--C-AGT----TGTAAT-GATTACAAAATCTGTATTTGCTTACATA---ATTGCAACA--ATGTGAATTGTTTATG----TTAGTGCGATCAGTATAT---C-TATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATATGT--CTCAATATT-----GTGAG----TTGTTTTATGT-TCAA---C-A-C-TTTAGTA-CTTGT----ATTTAA-TATTTGTTT-AGCACT-CA-ATTCCAG---AATCACCTTTTTTTTCCCGCTTTTATTTACATAAT-TATCTC---T--CTT-GTAGCACGCAGAGGATGCGAG--A-TTAATACAA-GCGTTTTTAGC-TTGTTT-TTC-A--TCTTTAAAATG
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAAT-ATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACAT-CAATTTAAATCTCA-TCTATGCTTTCCTAATAACAA-AAAATACACTTAAATGCAGGG-TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTTGGAAAAGCCAGA-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAAGAT----TAAAACCTGTAGTACTCT----A-AATCTTCATATGTGTTCAAAAGTAAACCATCATGTAA-TTCCACCTCTTTTGGTAACTT-TGGTG-TGAAG-AAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTTACCATTGAGTATCACCTAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTCCACATCATACTC----AATTGTAGAATTATTGTT----ATATGGTCAAGGATAA-TTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATA--ATATTGTATAGACCATCC-AT-TGTACATAACCCACGGTGATAACATAAA-TACTACAATACCTTGTAAT--TATGTAAA-TATTATACCTT-CAAGAC-ATTGTCGTAT
gi|11 : ttaCCTCTCTAT-CTCACTT--TAA--ATAGTAT---CTTAT-TGCAGG--TAAAATCA-------AAAT-TCCAAAT-TATTT-T--TTACTTT---CGGAGGCAG--TACTG-ACAA-CTA--TTCCAT-GCTAGAA----TT---AAGA-----TACAA--TGTAGTGCTCT----TGAATCT-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTC-ACCTCTTT--GTA---T-T--TGGTGGAG-AA-GTT--GAGAGTAC-TGAG------CATTTTCTT
gi|4 : T---CTTAA-TTCAGGCTTAGAATTA-------AAAATCCGAAAT--AT---------------------CCAGAACTCGG-AACAAC-A--CCC-AT-CGTACAA----TT---A-GAACGATTAGAAGTTGTATTGTTATGTATT-AATC--CATATAT-TTCAAAG--GAA---CTGTGCAAATCC-AACCCGTC--GTA---TAT--GG-TGGAGGAA-GTT--GCAA-TGC-TA----------------TTTGCACTG--------ACTA-----T---CTAGAATTAGAACA----AATACAATT----CTG--ACA--C-----CAT---ACTCTAATAAT-GATGAATTATTGTTACCAATATGAT-AAAAACAATTAATAC--GA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTG------TTACG-
gi|8 : TAGAGTTAGGAGC----AATACAATA----CTG--ACA--CTT-CACATCA-ACTC----AAT-GTAGAATTATTGTT----ATATGGT-AAGGATAATTTAT----GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAA------TTGCG-TTAATAAC-TGATTTATTGTATAG--CACCCGGG-TGTA-AT-A-----G-----AACA-AAA-C----CTATA-TTTGT--T--TA--TAT--TA------CTT-CA--AC-ATTGTC-TATTGattttgatctga
gi|14 : TTATCT--GA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAA------GT--G-TAAAATAC-TGATATATTGTATAG--CACCAGGGTTTTA-ATAA-----G-----AAGA-AAA-
gi|15 : -TGATTTATTGTATAG--CACCCGGG-TGTA-ATAA-----G-----AACA-AAA-C----CTATA-TTTGT--TTATA--TATA-TA------CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACAT-
gi|3 : GTA-ATAA-----G-----AACA-AAAAC----CTGTA-TTTGT--T--TA--TATAATA------CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACATGA-------------TCAGC---AGGGTCTACAATACTATATTTTATATTATTTCT-AAA--C--------TGCAAT---TTACA-----TGTATTTAC-TGC-TA---TTTAC------ATGTATCTTGATTACACCATTTAAC-CTCCCAATATAA---G-TATAGT---GAAACT--ATTTGTTTttgataagcagggttctacaat
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACAT-GGATCAGCAGGTTCT--ACAATA-----TATATT--TATA----TTATT-TCTA--AACTGC-ATTTACATGTATT-GATTACA-----TACATTTACCT-CATG---AT----ACAGTATGTG-ACTATTT-TG----TT-------TTAGCATCT---CATATAAT-TCtcagctctcaattgccagcatttacatttcgtttttccccatttttttttttgtattaattggttatatgacttattcgtttatacactttaatgttcaatctacctcatatcttcgtagtacatagagagcggattgatataaagccttttgcttgttttccaatcctttaaaattctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|8 : tgtacttgaaaattagtccTATTGTATAGCACC--C-GGG----TGTAATAGA--ACAAAACCTATATTTGTTTATATT---ACTTCAACA--TTGTCTATTGcatgcttctaccatttttcaaccca
gi|15 : tagagttaggagcaatacaatactgacacttcacatcaactcaatgtagaattattgttatatggtaaggataatttatgagaacgaaaaagcaatactttttattttagtccagaaatttcttctctaaagtaaaaggttctgagcctccttgtcaatgctcaattgcgttaataactgattTATTGTATAG-CAC--CCGGG----TGTAAT-AAGAACAAAACCTATATTTGTTTATATATATACTTCAACA--TTGTCTATTGTTTCTA----TCTATGTGATCTGTAT
gi|5 : tgattCAATATATATTT-TATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTATTAAGTTGTGAACTATTTGTTTTAGCTCTCAATTCC-AGC-TCTACCA-TTTTTTCCCATTTT--TATTTTTGT-A----T-TA-ATT--GG---TAT-ATGATTTATTGTACACTTTAATGTTCAT--C-TACCTA---TATCTT-GTAGTACACAGAGA--GCGAG--A-TTAATATAA-GC-CTTTTGGC-TTGTTT-CTCAA--TCTTTTAAATttttctactatgtatacatttgataagcagggttctacaat
gi|10 : atgtgatatgtatgttactactatgtatacatgtgatagcagggttctaATGT-TCAA---CGA-CACTTAGTA-TTTGT----GTGTAC-TATTTGTTT-TGCACTCCATATTCCAGCTTAACCCCC--------CCCCCTT---TTTATATTGT-TATtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|6 : GT-TCAA---C-A-C-TT-AGTA-TTTGT----GTGTAC-TATTTGTTTTAGCACT-CA-ATTCCAG---taattgtgtataatacttgaacatctttcataaaaatgcgtgtttcatttcctctctcttgtagcacgcagaagcgagatattgatataagccttttgctttgtttcttcaatctttaaaatgcattgtatgtaaaa
gi|7 : T-TCAA---C-A-G-CTTAGTAATTTGT----GTGTAACTATTTGTTTTAGCACT-CA-ATTCCActttaaccccccccccccctttttattgtttgtattaattggtataatacttgacattttacataaaaatgcgtgttcatttacctctctcttgtagcacgcagagagcgagatattgatataagccttttggcttgtttctcaatctttaaaatgcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|9 : AA---C-A-C-TT-AGTA-CTTGT----GAGTAC-TATTTGTTTTAGCACT-CA-ATTCCAG---CTTCACC----ATTTCCCCTTTTTATTTagcttataaccccccccctttttctatgattttagtattaattggttagatactttgacattttacataaaaatgcgtggttcatttatctctctcttgtacaacgcagagagcgagatttgatatagcctttggcttgtttctcaatctttaaacaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|6 : TTCATTTACCT-------CTC---T--CTT-GTAGCACGCAGAGA--GCGAGATA-TTGATATAA-GC-CTTTTGGC-TTGTTT-CTCAA--TCTTTAAAATGtttgtatcaattggtatatgacgagacattttccataaaaatattcatttacctctctcttgtagcacgcagagagtgagatcagccttttggcttgtttctcaatctttgaaatgcattgtatgtaaacaaaaattacacttatttctgaataaaattttgt
gi|9 : gttcaacacttagtatttgtgtgtactatttgttttagcactcaattccagctttaaccccccccccccctttttattgtttgtattaattggtataatacttgacattttacataaaaatgcgtgTTCATTTACCT-------CTC---T--CTT-GTAGCACGCAGAGA--GTGAG--A-TC------A-GC-CTTTTGGC-TTGTTT-CTCAA--TCTTTGAAATGcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|7 : aacacttagtacttgtgagtactatttgttttagcactcaattccagcttcaccatttcccctttttattttttgtatcaattggtatatgacgagacattttccataaaaataTTCATTTA-------TCTCTC---T--CTT-GTACAACGCAGAGA--GCGAG--ATTTGATATA----GCCTTTGGC-TTGTTT-CTCAA--TCTTTAAAcattgtatgtaaacaaaaattacacttatttctgaataaaattttgt
gi|3 : ttcaacagcttagtaatttgtgtgtaactatttgttttagcactcaattccaagcttataaccccccccctttttctatgattttagtattaattggttagatactttgacattttacataaaaatgcgtggAATCTACCTCATAT--CTTCGTAGTACATAGAGA--GCG-G--A-TTGATATAAAGCCTTTT--GC-TTGTTT-TCC-AATCCTTTAAAATcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|10 : gtaataagaacaaaaacctgtatttgtttatataatactttcaacgattgttcattgttcataatctatgtgatctgtatttttctactatgtatacatgatcagcagggtctacaatactatattttatattatttctaaactgcaatttacatgtatttactgctatttacatgtatcttgattacaccatttaacctcccaatataagtatagtgaaactatttgttttcagctctcaattgccagcatttacatttcgtttttccccatttttttttttgtattaattggttatatgacttattcgtttatacactttaatgttcTCTC---T--CTT-GTAGCACGCAGAA---GCGAGATA-TTGATATAA-GCCTTTT--GCTTTGTTTCTTCAA--TCTTTAAAATGtctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TCTTGTATTAATTGGTTATAAGGCATTTGACTCTATTGTAACGACTTTTTAATGTTTCATCTTACCTTTCATATCTTGCTCCTTGTAGTACAGTAGAGAGCGTAGATTGATGATAAAGCCCTTTTGGCGTTGTTCTCTCGAATCTGTGTCGACAATCTTTGTATGTAATATGAAATGAATGTATTCTGAATAACATGATTGTT
Unaligned ( gi|16 ): AAAATATTTCATTCACCTCTTACTGGTACATGTAATATTGATTATGAACCTTTTAGCTTGTTTTCAATCCTTCATAATTCATAGTTTGTACATGTATGTATAATTATATGCACATGCATTTTCAAATAAAATAATGTTT
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|18 ): TGAGCCTGTTGGCTTGTTTATTAATCTTCTTATAATACATAGTAGGTAAAGATAAATATAAACTTAATTATTTCTGAATAAAATATTGTTTC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 2 1 1 11 2222222222 1 333333333 222 11 1 2 1 22222 7777777777777777777777 333333333 2222 1 2 11 2 333333333333 111 1 1 11 3333333 11 1 1 444444444444444444 111 1 1 111 1 1 333333 111 44444444444 222222 222 11 11 222222 111 3333333333 2 11 1 44444444444444 11 77777777777 2222 22222 44444444 1 2222 1 2222 1 2222 11 55555555555555555555555555555555 11 1111 11 22222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 22 1 444444444444444444444 11 111 11 4444444444444444444444444444444444 2 88888888888888888888888888888888888888888888888888 1 22222222 11 22222 1111 2222222 1111111 111 4444444444444444444444444444444 6666666666666666666666666666666666666666666666 33333333333 11
lowQualScore : 5 88 3333 88 000 4 88 5 66 88 66666 5 0 5 5 77 8888888888 5 3 888888888 000 4 4 2 77 2 4 5 0 5 77777 7777777777777777777777 777777777 4444 5 3 4 0 88 77 3 1 0 666666666666 777 0 0 33 2222222 22 0 0 111111111111111111 2 111 99 0 2 777 0 0 222222 777 55555555555 2 888888 333 33 33 222222 9 2 555 0000000000 0 33 2 0 3 66666666666666 22 44 33333333333 3 1111 44444 55555555 2 0 1111 0 1111 0 3 2222 8 2 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 33333333 8 4 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 44 8 8 33 5 666666666666666666666 1 22 777 1 33 8888888888888888888888888888888888 2 1 00000000000000000000000000000000000000000000000000 0 44444444 1 33 0 6 11 33333 7 4444 2222222 0 7777777 0 666 5 7777777777777777777777777777777 5 4 66 5 0 0 222 5 5 66 1111111111111111111111111111111111111111111111 0 4 0 00000000000 66 66 66 4 4 66 4 22 4 8 4 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . . . ............ ... . . .. ....... .. . . .................. . ... .. . . ... . . ...... ... ........... . ...... ... .. .. ...... . . ... .......... . .. . . . .............. .. .. ........... . .... ..... ........ . . .... . .... . . .... . . . . .. ................................ . .. .... . . .. ........ . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... .. . . .. . ..................... . .. ... . .. .................................. . . .................................................. . ........ . .. . . .. ..... . .... ....... . ....... . ... . ............................... . . .. . . . ... . . .. .............................................. . . . ........... .. .. .. . . .. . .. . . . .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 0 0 0 55 5555555555 5 0 555555555 555 0 0 5 55 5 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 0 55 77 3 0 7 000000000000 555 0 0 88 5555555 00 0 0 888888888888888888 5 000 00 0 8 000 0 0 222222 555 22222222222 5 888888 222 22 88 888888 8 5 888 2222222222 0 88 5 0 2 00000000000000 00 00 33333333333 7 2222 88888 55555555 5 0 2222 0 2222 0 2 4444 0 2 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 44444444 0 6 2 6 88 0 0 00 00 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 22 0 0 00 0 111111111111111111111 0 00 000 0 88 0000000000000000000000000000000000 0 5 44444444444444444444444444444444444444444444444444 5 55555555 0 22 7 7 77 00000 3 0000 3333333 8 0000000 8 555 0 5555555555555555555555555555555 0 5 11 0 1 5 000 0 0 99 2222222222222222222222222222222222222222222222 1 0 9 33333333333 11 11 11 4 4 11 4 22 4 9 0 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AA-AGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TA-TCT-T--TAC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATT-CA-TGCTA-A----ATT---AAGAN---TAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---T-GTGGAGGAAGTT--GAGAGTAC-TGAG------TATTTT-TTTTNCGCTGA-TATCAC-T-A-----TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTC----AA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATTTATN--CGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG-GATCAGCA-GGTTCT--ACAATAGG-TCTACANTACTATAT--TTTAT--ATTG--TTTANAACCG--TGTA-ATG-ATTACA-GATCTGCATTTACCT-CATNA-TNCAACA-NTG--T---ATN-TTGTTTA---TATT--ANC----T--CAATATA--TNT---ATANT-TCGAAACTGCATTTGTTTGCATT-TGATCTACATTTGCC-TCATTATTA-GTTGTGA--ACTATTTGTTTTAG-GT-TCAATTCC-AGC-TTTAG-----------------TA-TTTGTNTGTA-CT-ATTTGTTTTAGCACT-CA-A--TTCCAG----TAT-NAC----C-----NTC-----CCCCCT-------TTCAT-TTACNT--T-T---ATC--T--CT--C-TTGTAGCAC-GCAGAGA--GCG-AGAT--T-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAAT-ATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACAT-CAATTTAAATCCCNCTCTATGCTCNCCTAATAACAATAGNAT---CTT-AATGCA-GG--TAAAAT-------CAAAATCTCCAAAT-TA-TCT-T--TAC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATT-CA-TGCTA-A----ATT---AAGA----TANAA-CTGTAGTGCTCT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCGTGTAAATTCACCTCTTC--GTA--T-T---T-GTGGAG-AAGTT--GAAAGTAC-TGAG------CGTTTT-TTTNNCACTGAGTATCACNCNAAGAATTACTCTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTC----AA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATTTATC--CGA-AAACGGAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CTTTG-TCGATGCTCAATT-ACG-TA-AATAACT--GAT-NTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TNTATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG-GATCAGCA-GGTTCTCAGCAATAGGGTCTACANTACTATAT--TTTNT--ATTG--TNTAGAACCGGGTGTA-ATG-ATTACAAAACCTATATTTGCTTACATAACTTCAACA-NTG--T---NTA-TTGTTT----TATT--ACC----T--CAGTATA--TNT---ATANT-TCGAAACTGCATTTGCNTGTATT-TGATCTACATTTACC-TCATTATTAAGTTGTGA--ACTATTTGTTTTAN-GT-TCAA---C-A-C-TTTAG-----------------TA-TTTGTGTGTA-CT-ATTTGTTTTAGCACT-CA-A--TTCCAG----NAT-CAC----C-----ATT-----CCCCCT-------TTCAT-TTACNT--T-T---ATC--T--CT--C-TTGTAGCAC-GCAGAGA--GCG-AGAT--T-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGA-----ACAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAAAAA---CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TA-TTT-T--TAC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATT-CA-TGCTA-A----ATT---AAGAA---TAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---T-GTGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCTG--TATTATATTA-----TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTC----AA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATTTATA--TGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-T---AT--ACA--------------------TACATTACTGTA------AT--ATTG--TATAGAACCAGTTGTA-ATG-ATTACAAAATCTGTATTTGCTTACATAATTGCAACA-ATG--T---GAA-TTGTTTA---TGTT--AGTGCGAT--CAGTATA--TCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATATGT--C-TCAATA-----TTGTGA--G----TTGTTTTAT-GT-TCAA---C-A-C-TTTAG-----------------TA-CTTGTATTTA-AT-ATTTG-TTTAGCACT-CA-A--TTCCAG----AAT-CAC----CTTTTTTTT-----CCCGCT-------TTTAT-TTACATAAT-T---ATC--T--CT--C-TTGTAGCAC-GCAGAGGATGCG-AGAT--T-AAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgAT-GT-TCAA---CGA-CACTTAG-----------------TA-TTTGTGTGTA-CT-ATTTGTTTT-GCACTCCATA--TTCCAG----CTT-AAC----C-----CCC-----CCCCCT-------T---T-TTATAT--T-
gi|10 : T-------TTCAT-TTCC-----------TC--T--CT--C-TTGTAGCAC-GCAGA-A--GCG-AGATATT-GAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATGgttattaattgtgtataatacttgaacatctttcataaaaatgcgtgtttcatttcctctctcttgtagcacgcagaagcgagatattgatataagccttttgctttgtttcttcaatctttaaaatgcattgtatgtaaaa
gi|11 : atgttcaacgacacttagtatttgtgtgtactatttgttttgcactccatattccagcttaacccccccccctttttatattgttattaattgtgtataatacttgaacatctttcataaaaatgcgtgCCTCTCTAT-CTCACTT--TAA--ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTTT-T--TAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AAGA----TACAA--TGTAGTGCTCT----TGAATC-T-CATATG--TTCAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTT-CTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TG-GATCAGCA-GGTTCT--ACAATA-----TATATT--TATATTATTTCTAAACTGCATTTACA------TGTA-TTG-ATTACA-----TACATTTACCT-CATGA-TACAGTATGTGACT---ATT-TTGTTT----TAGC--ATC----T--CA-TATAATTCC---ATGCT-TC
gi|13 : tgtacttgaaaattagtccT-------TTCATCTTACCT--T-TCATATC--TTGCT--CCTTGTAGTACAGTAGAGA--GCGTAGAT--T-GATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTtaccatttttcaaccca
gi|14 : tcttgtattaattggttataaggcatttgactctattgtaacgactttttaatgTTATC--TGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTT-GATAAGCAGGGTTCT--ACAAT
gi|16 : AT-TT-CAT--T-C---ACC--T--CTTAC-TGGTA-CAT-GTA----------ATAT--T-GATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaatT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAAT-ATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACAT-CAATTTAAATCTCA-TCTATGCTTTCCTAATAACAA-AAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTA-TCTATAATACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATT-CATTGCTA-AACATATTCAAAAGAT---TAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGT-GTGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTTACCATTGAGTATCACCTAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTC----AATTGTAGAATTATTGTT----ATATGGTCAAGGATAA-TTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T--GATCAGC---------------AGGGTCTACAATACTATAT--TTTAT--ATTA--TTTCTAAAC---TGCA-AT---TTACA-----TGTATTTACTGCTAT---TT--ACA--TG--T---ATC-TTGATTACACCATTTAACC----TCCCAATATA--AGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCT-CAATTGCCAGCAT--TTACAT-----------TTCGTTT-----T-TCCC---C-A-T-TTT----------------------TTTTTTTGTA-TTAATTGGTTATATGACT-T--A--TTCGTT----TATACAC-----------TT-----TAATGT-------TCAAT-CTACCT--CAT---ATC--T--------TCGTAGTAC-ATAGAGA--GCG--GAT--T-GAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TA-TC---------------------CAG-AACTCGG-AACAAC---ACC-CA-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---G-GTGGAGGAAGTT--GCAA-TGC-TA----------------TTTGCACTGACTATC----------------TAGAATTAGAACA----AATACAAT----TCTGACAC----------CAT---ACTCTAATAA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATTAATA--CGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : ATGTGATATGTATGTTACTACTATG-TATACA-TGTGAT-AGCA-G-------------GGTTCTACAATA-TATAT--TTTAT--ATTA--TC-AAAACTGCATTTACATGTATT---TGATCTACATTTACCT-CATTA--TTAA-G-TTG--TGAACTATTTGTTT----TAattttgatctga
gi|5 : --CAATATA--TATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACC-TCATTATTAAGTTGTGA--ACTATTTGTTTTAG-CTCTCAATTCC-AGC-TCTAC-----------------CA-TTTTTTCCCA-TT--TTTATTTTTGTA-T-TA-A--TT--GG----TAT--AT----G-----ATTTATTGTACACT-------TTAAT-GTTCAT--C-T---ACCTAT--AT--C-TTGTAGTAC-ACAGAGA--GCG-AGAT--T-AAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATgctctcaattccagctctaccattttttcccatttttatttttgtattaattggtatatgatttattgtacactttaatgttcatctacctatatcttgtagtacacagagagcgagattaatataagccttttggcttgtttctcaatcttttaaattctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|6 : atgtgatatgtatgttactactatgtatacatgtgatagcagggttcta-GT-TCAA---C-A-C-TT-AG-----------------TA-TTTGTGTGTA-CT-ATTTGTTTTAGCACT-CA-A--TTCCAGCTTTAAC-CCC----C-----CCC-----CCCCCT-------TTtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|6 : TGTGT--ACTATTTGTTTTAGCAC-TCAATTCC-AGC-TTTAACCCCCCCCCCCCCTTTTTA-TT-GTTTGTA-TT-AATTGGTATAATACT-TG-ACATTTTA-----CAT-AAA----A-----ATG-----CGTG---------TTCAT-TTACCT----------C--T--CT--C-TTGTAGCAC-GCAGAGA--GCG-AGATATT-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGttattgtttgtattaattggtataatacttgacattttacataaaaatgcgtgttcatttacctctctcttgtagcacgcagagagcgagatattgatataagccttttggcttgtttctcaatctttaaaatgcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|7 : gttcaacacttagtatttgT-TCAA---C-A-G-CTTAG-----------------TAATTTGTGTGTAACT-ATTTGTTTTAGCACT-CA-A--TTCCAAGCT-TAT-AAC----C------CC-----CCCCCT-------TTcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|7 : -------TTCAT-TTA-------T---CTC--T--CT--C-TTGTACAAC-GCAGAGA--GCG-AGAT--TTGAT-AT-A-G--C-CTTT-GGC-TTGTT-TC-TC-AAT-CTTTAAAttctatgattttagtattaattggttagatactttgacattttacataaaaatgcgtggttcatttatctctctcttgtacaacgcagagagcgagatttgatatagcctttggcttgtttctcaatctttaaacaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|8 : ttcaacagcttagtaatttgtgtgtaactatttgttttagcactcaattccaagcttataaccccccccctttttctatgattttagtattaattggttagatactttgacattttacataaaaatgcgtggTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTC----AA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATTTAT----GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : TTGTGAGTACTATTTGTTTTAGCAC-TCAATTCC-AGC-TTCAC-----------------CA-TTTCCCCTTT-TT-ATTTTTTGTA----T-CA-A--TTGGTA----TAT-GACGAGAC-----ATT-----TTCCATAAAAATATTCAT-TTACCT----------C--T--CT--C-TTGTAGCAC-GCAGAGA--GTG-AGAT--C---------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 1 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333333333 88888888888888888888 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 111111 11111 777777777777777 111 333333 11111 6666666666666 1 2222222222 11 5555555555555555555 22222222 11111 11 222222 222222 11111 1111 222222 111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333 11
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 0 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 33 0 3 99999999999999 1 0 33333333333333333333 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 8 8 777777 77777 000000000000000 0 66 0 777 1 222222 55555 1111111111111 0 3 1 8888888888 33 55 4444444444444444444 0 0 33333333 1 11111 22 0 99 222222 0 3 9 777 1 5 1 222222 33333 1 5 2222 888888 5 111 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 6666666666666 66 777 66 4 4 4 66 4 4 22 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. .. . . .............. . . .................... .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . . ...... ..... ............... . .. . ... . ...... ..... ............. . . . .......... .. .. ................... . . ........ . ..... .. . .. ...... . . . ... . . . ...... ..... . . .... ...... . ... . ............................................................................................................... . ............. .. ... .. . . . .. . . .. . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 8 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 55 0 2 00000000000000 0 7 33333333333333333333 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 0 888888 22222 222222222222222 2 55 8 000 0 555555 55555 0000000000000 0 2 0 5555555555 88 00 5555555555555555555 8 8 88888888 0 33333 00 2 00 888888 2 2 8 333 6 7 4 666666 00000 4 7 1111 999999 0 444 4 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 4444444444444 11 888 11 4 4 4 11 4 4 22 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTT-TTTTNCGCTG--TATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG-GATCAGCAGGGTTCTACAATA----TACA---ATACTATATTTTATATTG--TTTANAACCG--CGTAATGATTAC-A-------GATCTGCATTTACCT-CATNA-TNCAACA-NTG--TGNNTTGTTTATA----TTAGC-TC----TCAATATA--TNT---ATAGT-TCGAAACTGCATTTGTTTNCATT-TGATCTACATTTGCC-TCATT-ATT-NGT-TGTGA--ACTATTT-GT----TTTAG-AC-TC-A-ATTCCAGCTTTAN-----------------TA-T-TTGTNC-GT-A-TT-ATTTGTTT-TAGTACTCGA-----TTCCAG---TA------TAAC----C-----GTNCCCNNT-------TTCAT-TTACCT---T---ATCT--C---T--C-TT-GTAGCAC-GCAGAGA--GCG-AGA-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GANTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTT-TTTTNCGCTGA-TATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG-GATCAGCA-GGTTCTACAATAGGTCTACA---NTACTATATTTTATATTG--TTTANAACCG--TGTAATGATTAC-A-------GATCTGCATTTACCT-CATNA-TNCAACA-NTG--TATNTTGTTTATA----TTA---NC----TCAATATA--TNT---ATANT-TCGAAACTGCATTTGTTTGCATT-TGATCTACATTTGCC-TCATT-ATT-AGT-TGTGA--ACTATTT-GT----TTTAG-GT-TC-A-ATTCCAGCTTTAG-----------------TA-T-TTGTNT-GT-A-CT-ATTTGTTT-TAGCACTCAA-----TTCCAG---TA------TNAC----C-----NTCCCCCCT-------TTCAT-TTACNT--TT---ATCT--C---T--C-TT-GTAGCAC-GCAGAGA--GCG-AGA-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCTG--TATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA---------------TACA-------TACA---TTACTGTA----ATATTG--TATAGAACCAGTTGTAATGATTACAA-------AATCTGTATTTGCTTACATAATTGCAACA-ATG--TGAATTGTTTATG----TTA---GTGCGATCAGTATA--TCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA--TGTC-TCAAT-A-----T-TGTGA--G----TT-GT----TTTAT-GT-TC-A-A---CA-CTTTAG-----------------TA-C-TTGTAT-TT-A-AT-ATTTG-TT-TAGCACTCAA-----TTCCAG---AA------TCAC----CTTTTTTTTCCCGCT-------TTTAT-TTACATAATT---ATCT--C---T--C-TT-GTAGCAC-GCAGAGGATGCG-AGA-T--TAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgC-TTAGT-ATT-TGT--GTGT--ACTATTT-GT----TTTGC-AC-TCCATATTCCAGC-TTAACCCCCCCCCC-------TT-T-TTATATTGTTA-TT-AATTGTGTATAATACTTGAACATCTTTCA----TA------AAAA----T-----G---CGTGT-------TTCAT-TTCC----------TCT--C---T--C-TT-GTAGCAC-GCAGA-A--GCG-AGA-TATTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GA-TACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTT-CTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TG-GATCAGCA-GGTTCTACAATA----TATATTTATATTAT-TTCTAAACTGCATTTACA------TGTATTGATTAC-A-----------TACATTTACCT-CATGA-TACAGTATGTGACTATTTTGTTT-TA----GCA---TC----TC-ATATAATTCC---ATGCT-TC
gi|13 : tgtacttgaaaattagtccT-------TTCATCTTACCT--TTCATATCTTGC---T--CCTT-GTAGTACAGTAGAGA--GCGTAGA-T--TGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTtaccatttttcaaccca
gi|14 : tcttgtattaattggttataaggcatttgactctattgtaacgactttttaatgT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTT-GATAAGCAGGGTTCTACAAT
gi|16 : AT-TT-CAT--TC---ACCT--C---TTAC-TG-GTA-CAT-GTA----------ATA-T--TGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaatT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTTACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T--GATCAGCA-G-----------GGTCTACA---ATACTATATTTTATATTA--TTTCTAAAC---TGCAAT--TTAC-A-----------TGTATTTACTG-C--TA-TTT-ACA--TG--TATCTTGATTACACCATTTAACCTC----CCAATATA--AGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCT-CAATTGCCAGCAT---TT-A------------CATTTCGT----TTT------------TCCCCATTTT----------------------T-TTTTTT-GT-A-TTAATTGGTTA-TATGACTT-A-----TTCGTT---TA------TA-----------------CACT-------TTAATGTTCAAT--CT---ACCT--CATAT--C-TTCGTAGTAC-ATAGAGA--GCG--GA-T--TGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--G-CAATGC-TA----------------TTTGCACTG------A-C--TA---------TCTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : ATGTGATATGTATGTTACTACTATG-TATACA-TGTGAT-AGCAGGGTTCTACAATA---------------TATATTTTATATTA---TCAAAACTG--CAT-----TTAC-ATGTATTTGATCTACATTTACCT-CATTA-TT-AA-G-TTG--TGAACTATTTGTT----TTAGC-TC----TCAAT-------T---CCAGC-TCT--AC--CATTTTTTCCCATT----TTTATTTTTG----TATTAATT-GGTATATGA--TTTA-TT-GTACACTTTAATGT-TC-A---TCTACCT---A-----------------TA-TCTTGTA--GT-A-Cattttgatctga
gi|5 : CAATATA--TATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACC-TCATT-ATTAAGT-TGTGA--ACTATTT-GT----TTTAG-CTCTC-A-ATTCCAGCTCTAC-----------------CA-T-TTTTTC-CC-A-TT--TTTATTT-TTGTA-TTAA-----TT--GG---TATATGATTTAT----T-----GTACACTTTAATG---TTCAT-CTACCT--AT---A---------T--C-TT-GTAGTAC-ACAGAGA--GCG-AGA-T--TAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATacagagagcgagattaatataagccttttggcttgtttctcaatcttttaaattctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|6 : atgtgatatgtatgttactactatgtatacatgtgatagcagggttctaC-TTAGT-ATT-TGT--GTGT--ACTATTT-GT----TTTAGCAC-TC-A-ATTCCAGCTTTAACCCCCCCCCCCCCTTTTTA-T-T-GTTT-GT-A-TT-AATTGGTA-TAATACTTGACA---TTTTA----CA------TAAA----A-----ATGCGTG---------TTCAT-TTACCT---------CT--C---T--C-TT-GTAGCAC-GCAGAGA--GCG-AGA-TATTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaT-TC-A-A---CAGCTT-AG-----------------TAAT-TTGTGT-GT-AACT-ATTTGTTT-TAGCACTCAA-----TTCCAAGCTTA------TAAC----C-----CCCCCCCTT-------TTcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|7 : -------TTCAT-TTA------T---CTCT--C---T--C-TT-GTACAAC-GCAGAGA--GCG-AGATT--TGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAtctatgattttagtattaattggttagatactttgacattttacataaaaatgcgtggttcatttatctctctcttgtacaacgcagagagcgagatttgatatagcctttggcttgtttctcaatctttaaacaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|8 : ttcaacagcttagtaatttgtgtgtaactatttgttttagcactcaattccaagcttataaccccccccctttttctatgattttagtattaattggttagatactttgacattttacataaaaatgcgtggTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : TT-AGT-ACT-TGTGAGTACTATTT-GT----TTTAGCAC-TC-A-ATTCCAGCTTCAC-----------------CA-T-TTCCCC-TT-T-TT-ATTTTTTG-TA----TCAA-----TTGGTA---TA------TGACGAGAC-----ATTTTCCATAAAAATATTCAT-TTACCT---------CT--C---T--C-TT-GTAGCAC-GCAGAGA--GTG-AGA-T--C--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333333333 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 11111 222222222222 111 66666666666666666666666666666666 1 1 2222 22222 1 1111 111 11111 11 222222 2222222222222 2222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 44444444 11
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 55555555555555 1 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 8 8 99999 5 5 222222222222 0 66 0 777 1 88888888888888888888888888888888 0 3 1 0 77 8888 22 0 99999 6 3333 0 0 88 777 77777 22 0 77 222222 0 3 9 6 55 5 5 0 2222222222222 3 5 1111 555 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 777 22222222 66 4 4 66 4 22 4 8 4 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . .............. . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . . ..... . . ............ . .. . ... . ................................ . . . . .. .... .. . ..... . .... . . .. ... ..... .. . .. ...... . . . . .. . . . ............. . . .... ... . .............................................................................................................................. . . ... ........ .. . . .. . .. . . . .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 55555555555555 0 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 0 66666 0 0 333333333333 2 55 8 000 0 88888888888888888888888888888888 0 2 0 0 55 8888 00 2 00000 0 0000 8 8 00 555 00000 00 2 55 888888 2 2 8 5 33 0 0 1 4444444444444 1 0 4444 999 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 4 888 44444444 11 4 4 11 4 22 4 9 0 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTT-NTTTACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG-GATCAGCAGGGTTCTACAATATACA---ATACTATATTTTATATTG--TTTANAA-CCG--CGTAATGATTAC-A-------GATCTGCATTTACCT-CATNA-TNCAACA-TGTGANTTGTTTGTN----TTAGC-TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTNCATT-TGATCTACATTTGCCTTANT-ATTT-GT-TGTG-A--ACTATTT-GTTTTAGCA-CTC-A-ATTCCA-GCTT-------------------TAC-----------------TAT-TTNTNCGTATTAATTGGTTATA--GTACTC-GA-----TTCTAGTATA------AN----C-----GTNCNCNN-T-------TTCA-T-TTAC---CT------ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGAT--T-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTT-TTTTNCGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG-GATCAGCAGGGTTCTACAATATACA---ATACTATATTTTATATTG--TTTANAA-CCG--CGTAATGATTAC-A-------GATCTGCATTTACCT-CATNA-TNCAACANTGTGNNTTGTTTATA----TTAGC-TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTNCATT-TGATCTACATTTGCCTCATT-ATTN-GT-TGTG-A--ACTATTT-GTTTTAG-A-CTC-A-ATTCCA-GCTT-------------------TAN-----------------TAT-TTGTNCGTATTATTTGTTT-TA--GTACTC-GA-----TTCCAGTATA------AC----C-----GTNCCCNN-T-------TTCA-T-TTAC---CT-T----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGAT--T-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA---------------TAC---ATACA---TTACTGTA----ATATTG--TATAGAA-CCAGTTGTAATGATTACAA-------AATCTGTATTTGCTTACATAATTGCAACAATGTGAATTGTTTATG----TTAGT-GCGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA--TGTCTCAAT-A-----T-TGTG-A--G----TT-GTTTTAT-G-TTC-A-A---CA--CTT-------------------TAG-----------------TAC-TTGTATTTAATATTTG-TT-TA--GCACTC-AA-----TTCCAGAATC------AC----CTTTTTTTTCCCGC-T-------TTTA-T-TTACATAAT-T----ATCT--CTC-TTGTAGCAC-GCAGAGGATGCG-AGAT--T-AAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGT-ATTT-GT--GTG-T--ACTATTT-GTTTTGC-A-CTCCATATTCCA-GCTT-------------------AACCCCCCCCCCTTTT----TATATTGT---TATTAATTGTGTATA--ATACTT-GAACATCTTTCA-TAAA------AA----T-----G---CGTG-T-------TTCA-T-TT-C---CT--------CT--CTC-TTGTAGCAC-GCAGA-A--GCG-AGATATT-GAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTT-CTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TG-GATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTACA-------TGTATTGATTAC-A-----------TACATTTACCT-CATGA-TACAGTA-TGTGACTATTTTGTT----TTAGCATC--T-C-ATATA
gi|13 : tgtacttgaaaattagtccGTATTAATTGGTTATAAGGCATTT-GA-----CTCTATTGTA------ACGA--C-----TTTTTAATGT-------TTCA-TCTTAC---CT-TTCATATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAGAT--T-GATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : tcttT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTT-GATAAGCAGGGTTCTACAAT
gi|16 : -T-------TTCA-T-TCAC---CT--------CT--TAC-TGGTA-CAT-GTA----------ATAT--T-GATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaataT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTT-ATTTACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TG--ATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTAC-A-----------TGTATTTACTG-C--TA-TTTA-CA-TGTATCTTGATTACACCATTTAACCTC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCT-CAATTGCC--AGC-ATTT------------AC-ATTTCGTTTT------------TCCCC-ATTT-------------------T---------------------T-TTTTTTGTATTAATTGGTTATA--TGACTT--A-----TTC--GTTTA-------------------TACACTT-TAATG---TTCAAT-CTAC---CT-C----ATAT--CT--TCGTAGTAC-ATAGAGA--GCG--GAT--T-GAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-TGC-TA----------------TTTGCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : ATGTGATATGTATGTTACTACTATG-TATACA-TGTGAT-AGCAGGGTTCTACAATA-----------TATATTTTATATTA---TCAAAA-CTG--CAT-----TTAC-ATGTATTTGATCTACATTTACCT-CATTA-TT-AA-GTTGTGAACTATTTGTT----TTAGC-TC--T-CAAT-----T---CCAGC-TCT--AC--CATTTTTTCCCATT----TTTATTTTTG---TATTAATTG-GTATATG-------ATTT-ATTGTAC-A-CTattttgatctga
gi|5 : GT-TC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATT-ATTAAGT-TGTG-A--ACTATTT-GTTTTAG-CTCTC-A-ATTCCA-GCTC-------------------TAC-----------------CAT-TTTTTCCCATT-TTTATTT-TT--GTATT--AA-----TT--GGTATATGATTTAT----T-----GTACACTT-TAATG---TTCA-T-CTAC---CTAT----ATCT-------TGTAGTAC-ACAGAGA--GCG-AGAT--T-AAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATttaatgttcatctacctatatcttgtagtacacagagagcgagattaatataagccttttggcttgtttctcaatcttttaaattctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|6 : atgtgatatgtatgttactactatgtatacatgtgatagcaggCTTAGT-ATTT-GT--GTG-T--ACTATTT-GTTTTAGCA-CTC-A-ATTCCA-GCTT-------------------TAACCCCCCCCCCCCCTTTTTAT-T-GTTTGTATTAATTGGTA-TA--ATACTT-GACA---TTTTA-CATA------AA----A-----ATGC--GT-G-------TTCA-T-TTAC---CT--------CT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGATATT-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaaca-ATTT-GT--GTGTA--ACTATTT-GTTTTAGCA-CTC-A-ATTCCAAGCTTATAACCCCCCCCCTTTTTCTAT-----------------GAT-TT-TA-GTATTAATTGGTT-AG--ATACTTTGACA---TTTTA-CATA------AA----A-----ATGCGTGG-T-------T-CA-T-TTAT---CT--------CT--CTC-TTGTACAAC-GCAGAGA--GCG-AGAT--TTGAT-AT-A-G--C-CTTT-GGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagcttagtaTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : TT-AGTA-CT-TGTG-AGTACTATTT-GTTTTAGCA-CTC-A-ATTCCA-GCTT-------------------CAC-----------------CAT-TTCCCCTTTTTATTT--TT-T---GTA-TC-AA-----TT--GGTATATG----ACGAGAC-----ATTTTCCA-TAAAAATATTCA-T-TTAC---CT--------CT--CTC-TTGTAGCAC-GCAGAGA--GTG-AGAT--C---------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 111 222 1111 11 44444444444 333333 1 22222222222222 1 5555555555555555555555555555555 222 22 222222 1 2222 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3333333333333
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 6666 2 8 99 555 333 7777 88 44444444444 6 888888 2 0 66666666666666 0 8888888888888888888888888888888 3 1 333 00 0 6 333333 7 6 1 55 3333 11 1 5 55 0 555 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 5555555555555 66 4 4 66 4 66 4 66 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ...... . . .............. . ............................... . . ... .. . . ...... . . . .. .... .. . . .. . ... . ......................................................................................................................... . . ............. .. . . .. . .. . .. . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 55 222 333 7777 33 00000000000 7 111111 0 0 88888888888888 0 2222222222222222222222222222222 2 0 333 77 7 7 777777 3 0 0 99 3333 33 4 7 77 3 999 7 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 8888888888888 11 4 4 11 4 11 4 11 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTAC-AGAT-TGTAT-TTACTT-CATNA-TGCA-AC-ATGTGACTTGTTT-----ATTTTAGCA----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTACA-TTGCCTTAGTA-TTT-GT-GTG-NACTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TA---------------C---------TAT--TTNTN---C-GT-ATTAATTGGTTATA--GTAC-TTG--A--T--TCTAGCATA------AAC-----G----TNCGCNNT-------TTC-AT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TGGATCAGCAGGGTTCTACAATATACA---ATACTATATTTTATATTG--TTTA-NAACCG--CGTAATGATTAC-AGATCTGCAT-TTACCT-CATNA-TNCA-AC-ATGTGANTTGTTT-----GTNTTAGC-----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTNCATT-TGATCTACATTTGCCTTANTA-TTT-GTTGTG-AACTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TA---------------C---------TAT--TTNTN---C-GT-ATTAATTGGTTATA--GTAC-TCG--A--T--TCTAGTATA------ANC-----G----TNCNCNNT-------TTC-AT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA--------------TAC---ATACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATCTGTAT-TTGCTTACATAATTGCA-ACAATGTGAATTGTTT-----ATGTTAGT-----GCGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA--TGTCTCAATA------TTGTG-AG----TT-GTTTTA-TGTTC-A-A---C-A-CTT-TA---------------G---------TAC--TTGTA---T-TT-AAT-ATTTGTT-TA--GCAC-TCA--A--T--TCCAGAATC------ACCTTTTTT----TTCCCGCT-------TTT-AT-TTACATAATT-----ATCT--CTC-TTGTAGCAC-GCAGAGGATGCG-AG--A-T--TAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGTA-TTT-GT-GTG-TACTATTT-GTTTT-GCACTCCATATTCC-AGCTT-AA---------------CCCCCCCCCCTTT--TTATA---TTGTTATTAATTGTGTATA--ATAC-TTG--A--ACATCTTTCATA------AAA-----A----TGCG-TGT-------TTC-AT-TT-C----CT-------CT--CTC-TTGTAGCAC-GCAGA-A--GCG-AG--A-TATTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTAC-A----TACAT-TTACCT-CATGA-TACA-GT-ATGTGACTATTTT-----GTTTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtcc-GT-ATTAATTGGTTATAAGGCAT-TTG--A--C--TCTATTGTA------A-C-----GACTTTTTAATGT-------TTC-ATCTTAC----CTTTCATATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAG--A-T--TGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : tcttT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTTGATAAGCAGGGTTCTACAAT
gi|16 : T-------TTC-AT-TCAC----CT-------CT--TAC-TGGTA-CAT-GTA----------AT--A-T--TGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaataT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T-GATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTAC-A----TGTAT-TTACTG-C--TA-TTT--AC-ATGTATCTTGATTACACCATTTAACC-----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCT-CAATTGCC--AGCA-TTT---------AC-ATTTCGTTTT-----------TCCC-CATTT-T----------------------------T--TTTTT---T-GT-ATTAATTGGTTATA--TGAC-TT---A--T--TC--GTTTA-------------------TACACTTTAATG---TTCAAT-CTAC----CTC----ATAT--CT--TCGTAGTAC-ATAGAGA--GCG--G--A-T--TGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : GATATGTATGTTACT---ACTA-TGTATAC-ATGTGA----------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-TTAAGTTGTG-AACTATTT-GTTTTAGCTCTC-A-ATTCC-AGCTC-TA---------------C---------CAT--TTTTT---C-CC-ATT--TTTATTTTT--GTA--TTA--A--T----TGGTATATGATTTATT-----G----TACACTTTAATG---TTC-AT-CTAC----CT-----A--T--ATC-TTGTAGTAC-ACAGAGA--GCG-AG--A-T--TAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtCTTAGTA-TTT-GT-GTG-TACTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TAACCCCCCCCCCCC--C---------TTT--TTATTGTTT-GT-ATTAATTGGT-ATA--ATAC-TTG--ACAT--TTTA-CATA------AAA-----A----TGCGTG---------TTC-AT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGATA-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAATTT-GT-GTGTAACTATTT-GTTTTAGCACTC-A-ATTCCAAGCTTATAACCCCCCCCCTTTTTC---------TATGATTTTA-----GT-ATTAATTGGTTAGA---TACTTTGACA--T--TTTA-CATA------AAA-----A----TGCGTGG--------TTC-AT-TTAT----C-------TCT--CTC-TTGTACAAC-GCAGAGA--GCG-AG--ATT--TGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-CTT-GT-GAG-TACTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-CA---------------C---------CAT--TTCCC---C-TT-TTTA-TTTTTTGTA-------TCA--A--T--T--GGTATATGACGAGAC-----A----TTTTCCATAAAAATATTC-AT-TTAC----CT-------CT--CTC-TTGTAGCAC-GCAGAGA--GTG-AG--A-T--C--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 111 222 1111 11 44444444444 555555 1 33333333333333 1 333333333333333333333333333333 222 22 22222 1 111 44444444444444444444444444444444444444444444444444444444 888888888888888888888888888888888888888888888888888888 3333333333333
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 4444 2 8 99 555 333 7777 88 44444444444 6 222222 0 00000000000000 0 555555555555555555555555555555 3 1 333 00 0 6 22222 3 7 3 55 000 4 77777 1 5 55 0 555 5 22222222222222222222222222222222222222222222222222222222 5 6 999999999999999999999999999999999999999999999999999999 4 5555555555555 66 4 4 66 4 66 4 66 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ...... . .............. . .............................. . . ... .. . . ..... . . . .. ... . ..... . . .. . ... . ........................................................ . . ...................................................... . ............. .. . . .. . .. . .. . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 55 222 333 3333 33 00000000000 7 555555 0 22222222222222 0 888888888888888888888888888888 2 0 333 77 7 7 77777 7 3 3 99 000 3 44444 4 7 77 3 999 7 77777777777777777777777777777777777777777777777777777777 0 2 111111111111111111111111111111111111111111111111111111 4 8888888888888 11 4 4 11 4 11 4 11 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACAGA--C-TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TA---------------C---------TAT--TTNTN---C--------------GT-ATTAATTGGTTATA--NNAC-TTG--A----T--TCTATCATAAAN-----A----TNCGNTGT----TTCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACAGA--T-TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCA----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTACATT-GCCTTAGTA-TT---TGTGTGNA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TA---------------C---------TAT--TTNTN---C--------------GT-ATTAATTGGTTATA--GTAC-TTG--A----T--TCTAGCATAAAC-----G----TNCGCNNT----TTCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA--------------TAC---ATACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATC-TGTAT-TTGCTTAC-ATAATTGCA-ACAATGTGAATTGTTTAT----GTTAGTG-----CGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA-T-GTCTCAATA--T---TGTG-------AGTT-GTTTTA-TGTTC-A-A---C-A-CTT-TA---------------G---------TAC--TTGTA---T--------------TT-AAT-ATTTGTT-TA--GCAC-TCA--A----T--TCCAGAATCACCTTTTTT----TTCCCGCT----TTTAT-TTACATAATT-----ATCT--CTC-TTGTAGCAC-GCAGAGGATGCG-AG--A-T--TAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTT-GCACTCCATATTCC-AGCTT-AA---------------CCCCCCCCCCTTT--TTATA---TT-------------GTTATTAATTGTGTATA--ATAC-TTG--A----ACATCTTTCATAAAA-----A----TGCG-TGT----TTCAT-TT-C----CT-------CT--CTC-TTGTAGCAC-GCAGA-A--GCG-AG--A-TATTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTACA------TACAT-TTACCT-C-ATGA-TACA-GT-ATGTGACTATTTTGT----TTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtcc--------------GT-ATTAATTGGTTATAAGGCAT-TTG--A----C--TCTATTGTAA-C-----GACTTTTTAATGT----TTCATCTTAC----CTTTCATATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAG--A-T--TGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : tcttT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTTGATAAGCAGGGTTCTACAAT
gi|16 : T----TTCAT-TCAC----CT-------CT--TAC-TGGTA-CAT-GTA----------AT--A-T--TGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaataT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T-GATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTACA------TGTAT-TTACTG-CTATT--T----AC-ATGTATCTTGATTACACCATTTAACC----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCTCAATT-GCC--AGCA-TT---T------A-C-ATTTCGTTTT-----------TCCC-CATTT-T----------------------------T--TTTTT---T--------------GT-ATTAATTGGTTATA--TGAC-TT---A----T--TCGTTTATACAC----------TTTAATGT----TCAAT-CTAC----CTC----ATAT--CT--TCGTAGTAC-ATAGAGA--GCG--G--A-T--TGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : GA--TATGTATGTTACT----ACTA-TGTATAC-ATGTGA---------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-TTAAGT-TGTGAA-CTATTT-GTTTTAGCTCTC-A-ATTCC-AGCTC-TA---------------C---------CAT--TTTTT---CCCATTTTTATTTTTGT-ATTAATTGG-TATA--------TG--A----T--T----TAT---T-----G----TACACTTTAATGTTCAT-CTAC----CT-----A--T--ATC-TTGTAGTAC-ACAGAGA--GCG-AG--A-T--TAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TAACCCCCCCCCCCC--C---------TTT--TTATTGTTT--------------GT-ATTAATTGGT-ATA--ATAC-TTG--ACA--T--TTTA-CATAAAA-----A----TGCGTG------TTCAT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGATA-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAATT---TGTGTGTAACTATTT-GTTTTAGCACTC-A-ATTCCAAGCTTATAACCCCCCCCCTTTTTC---------TATGATTTTA------------------GT-ATTAATTGGTTAGA---TACTTTGACA----T--TTTA-CATAAAA-----A----TGCGTGG-----TTCAT-TTAT----C-------TCT--CTC-TTGTACAAC-GCAGAGA--GCG-AG--ATT--TGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-CT---TGTGAGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-CA---------------C---------CAT--TTCCC---CTTTTTATTTTTT--GT-ATCAATTGG-TATA--TGAC-GAG--ACATTT--TC---CATAAAA-----A----TA----------TTCAT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GTG-AG--A-T--C--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 111 222 1111 11 44444444444 333333 1 33333333333333 1 333333333333333333333333333333 222 22 22222 1 111 44444444444444444444444444444444444444444444444444444444 2222222222 3333333333 11111111 3333333333333
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 4444 2 8 99 555 333 7777 88 44444444444 6 999999 0 00000000000000 0 999999999999999999999999999999 3 1 333 00 0 6 22222 1 7 3 55 000 0 5 5 1 5 55 0 555 5 22222222222222222222222222222222222222222222222222222222 5 9 999999 66 4444444444 0000000000 3 66666666 4 1111111111111 66 55 4 66 4 66 4 66 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ...... . .............. . .............................. . . ... .. . . ..... . . . .. ... . . . . . .. . ... . ........................................................ . . ...... .. .......... .......... . ........ . ............. .. .. . .. . .. . .. . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 55 222 333 3333 33 00000000000 7 333333 0 22222222222222 0 222222222222222222222222222222 2 0 333 77 7 7 77777 0 3 3 99 000 7 1 7 4 7 77 3 999 7 77777777777777777777777777777777777777777777777777777777 0 4 555555 99 9999999999 8888888888 6 11111111 4 3333333333333 11 66 4 11 4 11 4 11 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-A--CTGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TA---------------C---------TAT--TTNTN---C--------------GT-ATTAATTGGTTATANNAC--TTG--A--T--TCTATCGTAAANA---TNCG-TGTTTC--------AT-TTAC----C-----T-ATCT--CT-CTTGTAGCAC-GCAGAGA--GCG-AG--A-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACAGA--CTGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TA---------------C---------TAT--TTNTN---C--------------GT-ATTAATTGGTTATANNAC--TTG--A--T--TCTATCATAAANA---TNCGNTGTTTC--------AT-TTAC----C-----T-ATCT--CT-CTTGTAGCAC-GCAGAGA--GCG-AG--A-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA--------------TAC---ATACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATCTGTAT-TTGCTTAC-ATAATTGCA-ACAATGTGAATTGTTTAT----GTTAGTG-----CGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA-T-GTCTCAATA--T---TGTG-------AGTT-GTTTTA-TGTTC-A-A---C-A-CTT-TA---------------G---------TAC--TTGTA---T--------------TT-AAT-ATTTGTT-TAGCAC--TCA--A--T--TC---CAGAATCA---CCTTTTTTTTCCCGCTTTTAT-TTACATAAT-----T-ATCT--CT-CTTGTAGCAC-GCAGAGGATGCG-AG--A-T--TAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTT-GCACTCCATATTCC-AGCTT-AA---------------CCCCCCCCCCTTT--TTATA---TT-------------GTTATTAATTGTGTATAATAC--TTG--A--ACATCTTTCATAAAAA---TGCG-TGTTTC--------AT-TT-C----C-----T---CT--CT-CTTGTAGCAC-GCAGA-A--GCG-AG--A-TATTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTACATA--C---AT-TTACCT-C-ATGA-TACA-GT-ATGTGACTATTTTGT----TTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtcc--------------GT-ATTAATTGGTTATAAGGCATTTG--A--C--TCTATTGTAACGACTTTTTAATGTTTC--------ATCTTAC----CTTTCAT-ATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAG--A-T--TGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : tcttT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTTGATAAGCAGGGTTCTACAAT
gi|16 : TATTTC--------AT-TCAC----C-----T---CT--TA-CTGGTA-CAT-GTA----------AT--A-T--TGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaaT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T-GATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTACA-----TGTAT-TTACTG-CTATT--T----AC-ATGTATCTTGATTACACCATTTAACC----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCTCAATT-GCC--AGCA-TT---------TA-C-ATTTCGTTTT-----------TCCC-CATTT-T----------------------------T--TTTTT---T--------------GT-ATTAATTGGTTATATGAC--TT---A--T--TCGTTTATACAC----TTTAATGTTCA--------AT-CTAC----C-----TCATAT--CT--TCGTAGTAC-ATAGAGA--GCG--G--A-T--TGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : TGTATGTTACT----ACTA-TGTATAC-ATGTGA---------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-TTAAGT-TGTGAA-CTATTT-GTTTTAGCTCTC-A-ATTCC-AGCTC-TA---------------C---------CAT--TTTTT---CCCATTTTTATTTTTGT-ATTAATTGGT-ATA-------TG--A--T--T-TATTGTACAC----TTTAATGTT-C--------AT-CTAC----C-----T-ATAT--CT---TGTAGTAC-ACAGAGA--GCG-AG--A-T--TAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtgataCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-TAACCCCCCCCCCCC--C---------TTT--TTATTGTTT--------------GT-ATTAATTGGT-ATAATAC--TTG--ACAT--TTTA-CATAAAAA---TGCG-TGTT-C--------AT-TTAC----C--------TCT--CT-CTTGTAGCAC-GCAGAGA--GCG-AGATA-T--TGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAATT---TGTGTGTAACTATTT-GTTTTAGCACTC-A-ATTCCAAGCTTATAACCCCCCCCCTTTTTC---------TATGATTTTA------------------GT-ATTAATTGGTTAGATACT--TTGACA--T--TTTA-CATAAAAA---TGCG-TGGTTC--------AT-TTAT----C--------TCT--CT-CTTGTACAAC-GCAGAGA--GCG-AG--ATT--TGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-CT---TGTGAGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-CA---------------C---------CAT--TTCCC---CTTTTTATTTTTT--GT-ATCAATTGGT-ATATGAC--GAG--ACAT--TTT-CCATAAAAA---TA------TTC--------AT-TTAC----C-----T---CT--CT-CTTGTAGCAC-GCAGAGA--GTG-AG--A-T--C--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 111 222 1111 11 44444444444 55555 1 33333333333333 1 333333333333333333333333333333 222 22 22222 1 111 444444444444444444444444444444444444444444444444 333333333333333333333333 33333333333333
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 4444 2 8 99 555 333 7777 88 44444444444 6 33333 0 00000000000000 0 999999999999999999999999999999 3 1 333 00 0 6 22222 1 7 3 55 000 0 5 5 1 5 55 0 5 5 5 333333333333333333333333333333333333333333333333 5 33 999999 666666666666666666666666 888 66 4 55555555555555 66 4 4 66 4 66 66 4 8 4 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ..... . .............. . .............................. . . ... .. . . ..... . . . .. ... . . . . . .. . . . . ................................................ . .. ...... ........................ ... .. . .............. .. . . .. . .. .. . . . .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 55 222 333 3333 33 00000000000 7 77777 0 22222222222222 0 222222222222222222222222222222 2 0 333 77 7 7 77777 0 3 3 99 000 7 1 7 4 7 77 3 7 7 7 444444444444444444444444444444444444444444444444 0 44 555555 444444444444444444444444 999 22 4 88888888888888 11 4 4 11 4 11 11 4 9 0 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCCA-GCTT-TA-CCCCCCCC------CTAT--TTNT-T---C--------------G-TATTAATTGGTTATANNAC--TTGACATTCTATCGTAAANA--------TNCGTG-TTTCAT-TTAC----C-----T-ATCT--CT-CTTGTAGCAC-GCAGAGA--GCG-AG--AT--T-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACAA---CTGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCCA-GCTT-TA---------------CTAT--TTNT-N---C--------------G-TATTAATTGGTTATANNAC--TTGA--TTCTATCGTAAANA--------TNCGTG-TTTCAT-TTAC----C-----T-ATCT--CT-CTTGTAGCAC-GCAGAGA--GCG-AG--AT--T-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA--------------TAC---ATACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATCTGTAT-TTGCTTAC-ATAATTGCA-ACAATGTGAATTGTTTAT----GTTAGTG-----CGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA-T-GTCTCAATA--T---TGTG-------AGTT-GTTTTA-TGTT-CA-A---CA--CTT-TA---------------GTAC--TTGT-A---T--------------T-TAAT-ATTTGTT-TAGCAC--TCAA--TTCCA--G-AATCACCTTTTTTTTCCCGCTTTTAT-TTACATAAT-----T-ATCT--CT-CTTGTAGCAC-GCAGAGGATGCG-AG--AT--T-AAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTT-GCACTCCATATTCCA-GCTT-AACCCCCCCCC------CTTT--TTATAT---T--------------GTTATTAATTGTGTATAATAC--TTGAACATCTTTCATAAAAA--------TGCGTG-TTTCAT-TT-C----C--------TCT--CT-CTTGTAGCAC-GCAGA-A--GCG-AGATAT--T-GAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTACA-----TACAT-TTACCT-C-ATGA-TACA-GT-ATGTGACTATTTTGT----TTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtcc--------------G-TATTAATTGGTTATAAGGCATTTGA--CTCTATTGTAACGACTTT----TTAATG-TTTCATCTTAC----CTTTCAT-ATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAG--AT--T-GATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : tcttT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTTGATAAGCAGGGTTCTACAAT
gi|16 : TA-TTTCAT-TCAC----C-----T---CT--TA-CTGGTA-CAT-GTA----------AT--AT--T-GATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaaT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T-GATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTACA-----TGTAT-TTACTG-CTATT--T----AC-ATGTATCTTGATTACACCATTTAACC----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCTCAATT-GCC--AGCA-TT---------TA-C-ATTTCGTTTT-----------TCCCC-ATTT-T-------------------T--TTTT-T---T--------------G-TATTAATTGGTTATATGAC--TT-A--TTCGTTTATACACT--------TTAATG-TTCAAT-CTAC----C-----TCATAT--CT--TCGTAGTAC-ATAGAGA--GCG--G--AT--T-GAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : TGTATGTTACT----ACTA-TGTATAC-ATGTGA---------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-TTAAGT-TGTGAA-CTATTT-GTTTTAGCTCT-CA-ATTCCA-GCTC-TA---------------CCAT--TTTT-T---CCCATTTTTATTTTTG-TATTAATTGG-TATA-------TGA--TT-TATTGTACACT--------TTAATG--TTCAT-CTAC----C-----T-A--T--AT-CTTGTAGTAC-ACAGAGA--GCG-AG--AT--T-AAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtgataCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCCA-GCTT-TAACCCCCCCCCCCC--CTTT--TTAT-TGTTT--------------G-TATTAATTGGT-ATAATAC--TTGACATTTTA-CATAAAAA--------TGCGTG-TT-CAT-TTAC----C-----T---CT--CT-CTTGTAGCAC-GCAGAGA--GCG-AG--ATATT-GAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAATT---TGTGTGTAACTATTT-GTTTTAGCACT-CA-ATTCCAAGCTTATAACCCCCCCCCTTTTTCTATGATTTT-A------------------G-TATTAATTGGTTAGATACT--TTGACATTTTA-CATAAAAA--------TGCGTG-GTTCAT-TTAT----C-----T---CT--CT-CTTGTACAAC-GCAGAGA--GCG-AG--AT--TTGAT-AT-A-G--C-CTTT-GGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-CT---TGTGAGTA-CTATTT-GTTTTAGCACT-CA-ATTCCA-GCTT-CA---------------CCAT--TTCC-C---CTTTTTATTTTTT--G-TATCAATTGGT-ATATGAC--GAGACATTTT-CCATAAAAA--------TA------TTCAT-TTAC----C-----T---CT--CT-CTTGTAGCAC-GCAGAGA--GTG-AG--AT--C---------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 111 222 1111 11 44444444444 22222 1 33333333333333 1 333333333333333333333333333333 222 22 22222 1 111 7777777777777777777777777777777777777777777777777 11 22222222 333333333333 11
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 4444 2 8 99 555 333 7777 88 44444444444 6 55555 0 00000000000000 0 999999999999999999999999999999 3 1 333 00 0 6 22222 1 7 3 55 000 0 5 5 1 5 55 0 555 5 5555555555555555555555555555555555555555555555555 5 5 66 6 999999 7777 44 1 88888888 888 3 4 4 666666666666 66 55 4 66 4 22 4 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ..... . .............. . .............................. . . ... .. . . ..... . . . .. ... . . . . . .. . ... . ................................................. . . .. . ...... .... .. . ........ ... . . . ............ .. .. . .. . .. . . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 55 222 333 3333 33 00000000000 7 00000 0 22222222222222 0 222222222222222222222222222222 2 0 333 77 7 7 77777 0 3 3 99 000 7 1 7 4 7 77 3 999 7 8888888888888888888888888888888888888888888888888 0 0 99 2 555555 8888 99 0 88888888 999 4 4 4 777777777777 11 66 4 11 4 22 4 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-T-A-----C-----C--CCCCCCC-TNT---T-------TTT----TTGT-A-TTA--ATTGGTTATANNAC--TTGA-CATTCTATCGTAAANA--------TNCGTGTT-TCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-T-A-----C-----C--CCCCCCC-TAT---T-------TNT----TCGT-A-TTA--ATTGGTTATANNAC--TTGA-CATTCTATCGTAAANA--------TNCGTGTT-TCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA--------------TAC---ATACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATCTGTAT-TTGCTTAC-ATAATTGCA-ACAATGTGAATTGTTTAT----GTTAGTG-----CGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA-T-GTCTCAATA--T---TGTG-------AGTT-GTTTTA-TGTTC-A-A---C-A-CTT-T-A--------------------G-TAC---T-------T--------GT-ATTTAATATTTGTT-TAGCAC--TCA---ATTCCA--G-AATCACCTTTTTTTTCCCGCTTTTAT-TTACATAATT-----ATCT--CTC-TTGTAGCAC-GCAGAGGATGCG-AG--A-TTAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTT-GCACTCCATATTCC-AGCTT-A-A-----C-----C--CCCCCCCCTTT---T-------TATA---TTGTTA-TTA--ATTGTGTATAATAC--TTGAACAT-CTTTCATAAAAA--------TGCGTGTT-TCAT-TT-C----C-------TCT--CTC-TTGTAGCAC-GCAGA-A--GCG-AGATA-TTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTACA-----TACAT-TTACCT-C-ATGA-TACA-GT-ATGTGACTATTTTGT----TTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtcc----TTGT-A-TTA--ATTGGTTATAAGGCATTTGA-C--TCTATTGTAACGACTTT----TTAATGTT-TCATCTTAC----CTTTCATATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAG--A-TTGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : tcT-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTTGATAAGCAGGGTTCTACAAT
gi|16 : TATT-TCAT-TCAC----CT-------CT--TAC-TGGTA-CAT-GTA----------AT--A-TTGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaaT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T-GATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTACA-----TGTAT-TTACTG-CTATT--T----AC-ATGTATCTTGATTACACCATTTAACC----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCTCAATT-GCC--AGCA-TT---------TA-C-ATTTCGTTTT-----------TCCC-CATTT-T--------------------------T---T-------TTT----TTGT-A-TTA--ATTGGTTATATGAC--TT----ATTCGTTTATACACT--------TTAATGTT-CAAT-CTAC----CTC----ATAT--CT--TCGTAGTAC-ATAGAGA--GCG--G--A-TTGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : ATA-----TGTATGTTACT----ACTA-TGTATAC-ATGTGA---------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-TTAAGT-TGTGAA-CTATTT-GTTTTAGCTCTC-A-ATTCC-AGCTC-T-A-----C-----CATTTTTTCC-CAT---T-------TTTATTTTTGT-A-TTA--ATTGGT-ATA-------TGA----TTTATTGTACACT--------TTAATGTT--CAT-CTAC----CT-----ATAT--CT---TGTAGTAC-ACAGAGA--GCG-AG--A-TTAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-T-AACCCCC-----C--CCCCCCC-TTTTTAT-------TGT----TTGT-A-TTA--ATTGG-TATAATAC--TTGA-CATTTTA-CATAAAAA--------TGCGTG-T-TCAT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGATA-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAATT---TGTGTGTAACTATTT-GTTTTAGCACTC-A-ATTCCAAGCTTATAA-----C-----C--CCCCCCC-TTT---TTCTATGATTT----TAGT-A-TTA--ATTGGTTAGATACT--TTGA-CATTTTA-CATAAAAA--------TGCGTGGT-TCAT-TTAT----C-------TCT--CTC-TTGTACAAC-GCAGAGA--GCG-AG--ATTTGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-CT---TGTGAGTA-CTATTT-GTTTTAGCACTC-A-ATTCC-AGCTT-C-A-----CCATTTC--CCCTTTT-TAT---T-------TTT----T-GT-A-TCA--ATTGG-TATATGAC--GAGA-CATTTT-CCATAAAAA--------TA-----T-TCAT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GTG-AG--A-TC--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 55555555555555555555555555555555 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 111 222 1111 11 44444444444 22222 1 33333333333333 1 333333333333333333333333333333 222 22 22222 22 11111 33333333333333333333333333333333333333333333 111 11 22222222 333333333333 11
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 8 11 99999999999999999999999999999999 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 4444 2 8 99 999 333 7777 88 44444444444 6 55555 0 00000000000000 0 999999999999999999999999999999 3 1 333 00 0 6 22222 1 00 5 99999 1 5 1 5 55 0 5 5 1 5 0 55555555555555555555555555555555555555555555 5 5 66 5 6 999999 5 111 44 1 88888888 888 66 4 666666666666 66 55 4 66 4 22 4 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . . .. ................................ . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ..... . .............. . .............................. . . ... .. . . ..... . .. . ..... . . . . .. . . . . . . ............................................ . . .. . . ...... . ... .. . ........ ... .. . ............ .. .. . .. . .. . . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 0 00 00000000000000000000000000000000 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 55 222 333 3333 33 00000000000 7 00000 0 22222222222222 0 222222222222222222222222222222 2 0 333 77 7 7 77777 0 77 7 33333 7 7 4 7 77 3 7 7 4 7 7 88888888888888888888888888888888888888888888 0 0 99 0 2 555555 0 999 99 0 88888888 999 22 4 777777777777 11 66 4 11 4 22 4 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAAT-TACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNAT-GCA-ACA-TGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCC-AGCTT-T-A---CC-----CCCCCCCTTT---T-T------T-----T-TT-G-TATT--A-ATTGGTTATANNAC--TTG-ACATTCTATCGTAAANA--------TNCGTG-TTTCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAATATACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNAT-GCA-ACA-TGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCC-AGCTT-T-A---CC-----CCCCCCCTNT---T-T------T-----T-TT-G-TATT--A-ATTGGTTATANNAC--TTG-ACATTCTATCGTAAANA--------TNCGTG-TTTCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTG-TATACA-TA--------------TACA---TACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATCTGTAT-TTGCTTAC-ATAATTGCA-ACAATGTGAATTGTTTAT----GTTAGTG-----CGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATAT--GTCTCAATA-TT------GTG-----AGTT-GTTTTA-TGTT-CA-A---C-A-CTT-T-A---GT-----AC----------------------------TT-G-TATTTAATATTTGTT-TAGCAC--TCA-A--TTCCA--G-AATCACCTTTTTTTTCCCGCTTTTAT-TTACATAATT-----ATCT--CTC-TTGTAGCAC-GCAGAGGATGCG-AG--A-TTAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATG
gi|10 : tcgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTT-GCACTCCATATTCC-AGCTT-A-A---CC-----CCCCCCCCTT---T-T------TA----TATT-GTTATT--A-ATTGTGTATAATAC--TTGAACA-TCTTTCATAAAAA--------TGCGTG-TTTCAT-TT-C----C-------TCT--CTC-TTGTAGCAC-GCAGA-A--GCG-AGATA-TTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTACA-----TACAT-TTACCT-C-ATGAT-ACA-GTA-TGTGACTATTTTGT----TTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtcc------T-----C-TT-G-TATT--A-ATTGGTTATAAGGCATTTG-AC--TCTATTGTAACGACTTT----TTAATG-TTTCATCTTAC----CTTTCATATCTTGCTCCTTGTAGTACAGTAGAGA--GCGTAG--A-TTGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : T-TATCTGA-AAGCAAAA-AC-AGC--AA-------TA--------T-----TTTTGATTTAGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATG-TATACATTTGATAAGCAGGGTTCTACAAT
gi|16 : TA-TTTCAT-TCAC----CT-------CT--TAC-TGGTA-CAT-GTA----------AT--A-TTGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaaT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-AC-AGCTTAATATTTTTTA--------T-----TT-------AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATG-TATACA-T-GATCAGCAGGGTC--------TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTACA-----TGTAT-TTACTG-CTATT-T-----ACA-TGTATCTTGATTACACCATTTAACC----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCTCAATT-GCC--AGCA-TT---------TA-C-ATTTCGTTTT-----------------------------T-----CCCCATTTTT---T-T------T-----T-TT-G-TATT--A-ATTGGTTATATGAC--TT----ATTCGTTTATACACT--------TTAATG-TTCAAT-CTAC----CTC----ATAT--CT--TCGTAGTAC-ATAGAGA--GCG--G--A-TTGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAAAC--TA-------CA--------TGTCAGTT-------AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : ATA-----TGTATGTTACT----ACTAT-GTATACA-TGTGA---------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-TTAAGT-TGTGAA-CTATTT-GTTTTAGCTCT-CA-ATTCC-AGCTC-T-A---CCATTTTTTCCCATTTT---TAT------T-----T-TT-G-TATT--A-ATTGGT-ATA-------TG-A---TTTATTGTACACT--------TTAATG-TT-CAT-CTAC----CT-----ATAT--CT---TGTAGTAC-ACAGAGA--GCG-AG--A-TTAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtgCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCC-AGCTT-T-AACCCC-----CCCCCCCCCT---T-T------TTATTGT-TT-G-TATT--A-ATTGG-TATAATAC--TTG-ACATTTTA-CATAAAAA--------TGCGTG--TTCAT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AGATA-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAATT---TGTGTGTAACTATTT-GTTTTAGCACT-CA-ATTCCAAGCTTATAA---CC-----CCCCCCCTTT---T-TCTATGAT-----T-TTAG-TATT--A-ATTGGTTAGATACT--TTG-ACATTTTA-CATAAAAA--------TGCGTG-GTTCAT-TTAT----C-------TCT--CTC-TTGTACAAC-GCAGAGA--GCG-AG--ATTTGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A--AGC--AA-------TACTTTTTATT-----TT-------AGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-CT---TGTGAGTA-CTATTT-GTTTTAGCACT-CA-ATTCC-AGCTT-C-A---CCA----TTTCCCCTTTTTAT-T------T-----T-TT-G-TATC--A-ATTGG-TATATGAC--GAG-ACATTTT-CCATAAAAA--------TA------TTCAT-TTAC----C-------TCT--CTC-TTGTAGCAC-GCAGAGA--GTG-AG--A-TC--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
blockSeqs : C AC CTTC TG CAC T AA A AA AC CCATC C . C C CC AGCGATTCAG A A ACAACTTAA GGT T T C CC C T T . G AAAAA TTTATTATCTTTAATATCATTC TCCCAGCAA ACAT G A A . TT TC G AA C GT ACA A G CT CACTACA TC G TATAATACTTTTGGAAA G TA TG C G TAA CA AACAT CAAAA T CC C GTATT TT G T GT CCATC A C TG ACTTTGG G A CG G A A ATGTCATG C . C TGAGTATCACCTAAAGAAT A TTCA AATGA ATTCTTC A T C T ACCA C A CT G G T A TT TACTTTTTATTTT AA ACGA T T AA TTTACC A T T AA T C AA AA AC TTGTACATAACCCAC T A T TACT A T TAT TTA C T AG G G CA T T TTTG C G TC ATA TTT ATTT CA TAAACTGC G . G TCATGATACA . CTTGATTACACCATTTAACCTCC A G TTT AT G TATT A TT A AAGT T A T C AG C T T A TAACCCCCCCCCCCCCTTTTTATTGT A T . . G AGGCAT A CAT TT A CTTT GCG T C CTTTCATA TG CC A . T AT T G AA GC . G C CT G C
blockSeqs : A . . . AA . . . . . T . TTTTACTTTCGG C AA CG . C T AT GA AGAAC T GT C TG T . T . AT T C . TAT . G . G . A CA A . A GACTA . . T CA A . C . . . . TC . A . . . TATTTTTGATTT . CG . . . . T . C A . . . A . . . . . . . . TAA TAA . . . . . . T . TGG A G TC . . TTC . CATG . . . ACTATGTAT . CTATTTTGTTTTAGCATCT A A . . . CA C T . TG T . T . AG . . T . ATAACCCCCCCCCTTTTTCTATGATT . . . . T ATAC . CAT AT G . TAA T . CTCA . C . . . AT . T A . . . . C . .
blockSeqs : . . . . . A . . . A . . . . A CA AA . . A A . . . . CT A A . TT . . . . . . . A . A TT . . . . . . . AC . T . . . TATTTTTTATTT . CT . . . . T . C G . . . T . . . . . . . . T TA . . . . . . . TG C . C . . GCTATTT . TAGCAGGGTTCTA . . TG A . T . AG . . T . TACCATTTTTTCCCATTTTTATTT . . . . T TGAC . CAT TT C . TAA T . CTA . C . . . . . . A . . . . A . .
blockSeqs : . . . A . . . CATGTCAGTT . . . . . . C . . . . . T . . . . . . . . T T . . . . . . TG T . T . AG . . T . CACCATTTCCCCTTTTTATTTT . . . . T ATAC . CA AT C . TAA T . CT . C . . . . . . G . . . . T . .
blockSeqs : . . . . . TG T . T . G . . T . AACCCCCCCCCCTTTTTATA . . . . T TACT . AT A A . GCG T . C . C . . . . . . G . . . . C . .
blockSeqs : . . T . . . . . . . . TCCCCATTTTTTTTT . . . . . TGAC . C A A . GCG G . C . C . . . . . . A . . . . C . .
blockSeqs : . . . . . . . . C A . A . . C . . . . . . . . A . . . . C . .
blockSeqs : . . C . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . .
blockSeqCons : TATTTTTATTT********************* TA** TG*** AG NACCCCCCCCCCTTTTTATTTT********************** ** CAT NT ******** T* CT********** **
originalCons : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AA-------TA--------T-----TT-------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAAT-TACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNAT-GCA-ACA-TGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TT---TGTGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCC-AGCTT-T-A---CC-----CCCCCCCTTT---T-T------T-----T-TT-G-TATT--A-ATTGGTTATANNAC--TTG-ACATTCTATCGTAAANA--------TNCGTG-TTTCAT-TTAC----CT-----ATCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
finalCons : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-AC-AGC--AATATTTTTATTT---------------------AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATATA--TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATG-TATACA-TNGATCAGCAGGGTTCTACAAT-TACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNAT-GCA-ACA-TGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-TTTG---TGTGTA-CTATTT-GTTTTAGCACT-CA-ATTCC-AGCTTNACCCCCCCCCCTTTTTATTTT----------------------TT-G-TATT--A-ATTGGTTATANNAC--TTG-ACATTCTNTCGTAAANA--------TNCGTGT-TTCAT-TTACCT----------TCT--CTC-TTGTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 11 2222 11 222 11 1 11 22222 1 1 1 1 11 2222222222 1 333333333 222 11 1 1 1 22222 7777777777777777777777 333333333 2222 1 1 11 1 11 1 11 111 1 1 11 3333333 11 1 5555555555555555555 111 1 1 111 111 333333 22222222 33 222222 222 1 11 22222 11 22222222 1 1 11 1 33333333 1 666666666666666666666 2222 22222 33333333 1 1 2222 1 11 11 111 11 1111 11 222222 11 1 11 11 555555555555555 1111 11111 1111 11 4444444 1 1111 11 222 222 1111 11 44444444444 22222 1 33333333333333 1 333333333333333333333333333333 222 22 22222 1 44444444444444444444444444444444 111 111 111 22222222222222222 11 2222 11111111 333333333333 11111 11
lowQualScore : 5 88 3333 88 000 1 88 5 22 88 66666 5 5 5 5 66 8888888888 5 1 888888888 000 1 1 1 77 1 1 5 5 5 77777 7777777777777777777777 777777777 4444 5 1 1 5 66 77 3 88 3 33 777 0 0 33 2222222 22 0 1111111111111111111 2 111 99 0 2 777 111 222222 00000000 3 0 99 1 888888 333 0 3 33 00000 9 1 33 33333333 0 9 33 2 0 3 00000000 1 3 3 000000000000000000000 7 1111 22222 00000000 3 0 2 0 1111 0 8 00 8 1 8 11 888 8888 0 8 0 11 1111 8 8 11 333333 1 8 3 0 11 8 0 11 99 11 000000000000000 8 6 6 4444 6 8 33333 0000 8 8 11 8 8 4444444 3 0 4444 2 8 11 000 333 7777 88 44444444444 6 55555 0 00000000000000 0 999999999999999999999999999999 3 1 333 00 0 6 22222 1 7 3 11111111111111111111111111111111 5 000 000 5 000 5 5 5 5 55555555555555555 3 5 77 1 8 22 77 00 1 0000 1 1 22222222 1 4 000000000000 11111 4 4 66 4 22 4 8 55 55 4 4 4 44 4 4
lowQualScore : . .. .... .. ... . .. . .. .. ..... . . . . .. .......... . . ......... ... . . . .. . . . . . ..... ...................... ......... .... . . . . .. .. . .. . .. ... . . .. ....... .. . ................... . ... .. . . ... ... ...... ........ . . .. . ...... ... . . .. ..... . . .. ........ . . .. . . . ........ . . . ..................... . .... ..... ........ . . . . .... . . .. . . . .. ... .... . . . .. .... . . .. ...... . . . . .. . . .. .. .. ............... . . . .... . . ..... .... . . .. . . ....... . . .... . . .. ... ... .... .. ........... . ..... . .............. . .............................. . . ... .. . . ..... . . . ................................ . ... ... . ... . . . . ................. . . .. . . .. .. .. . .... . . ........ . . ............ ..... . . .. . .. . . .. .. . . . .. . .
lowQualScore : 0 00 5555 00 555 0 55 5 00 00 55555 0 5 0 0 00 5555555555 5 0 555555555 555 0 0 0 55 0 0 5 0 0 55555 0000000000000000000000 000000000 0000 0 0 0 5 55 77 3 33 3 00 555 0 0 88 5555555 00 0 8888888888888888888 5 000 00 0 8 000 000 222222 88888888 2 2 00 0 888888 222 0 2 88 88888 8 0 88 22222222 0 0 88 5 0 2 22222222 0 3 7 777777777777777777777 3 2222 22222 88888888 2 0 5 0 2222 0 0 22 0 4 0 00 000 2222 6 0 8 00 0000 0 0 00 000000 4 0 2 6 88 0 0 00 44 00 000000000000000 0 7 7 2222 7 0 00000 8888 0 0 00 0 0 3333333 2 0 2222 5 8 88 000 333 3333 33 00000000000 7 00000 0 22222222222222 0 222222222222222222222222222222 2 0 333 77 7 7 77777 0 3 3 33333333333333333333333333333333 7 000 000 7 000 0 7 7 7 44444444444444444 0 7 99 7 4 00 99 00 4 3333 4 0 44444444 8 4 444444444444 11111 4 4 11 4 22 4 9 33 55 0 0 0 77 0 0
consensus : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-ACAGC--AATA-T-TTTT-ATTT-AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATGT-ATACA-TNGATCAGCAGGGTTCTACAAT-TACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-----------TT---TGTGT-----------GTA-C---TATT---T-GTT---TTAGCACT-CA-ATTCC-AGCT--TNA----CC----CCCCCCCNTTTT-TAT--TTTTTGTATTAATTGGTTATANGAC--TTG-ACATTCTNTCGTAAAAA----TNCGTGTTTCAT-TTACCT-----TC----TCT-----CTT-GTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
Reference ( family-4135 ) : NNNATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACGANAATCATCGTTCAATGATCCAAACTNNAACCAAGATGTACCATCAATTCGCATGACTCCAAATTATCTAACCCAATCATTNCTCAAGCGATTCAGACAATAGAAANCAACAACTTAAGGTCATGGTAATTATNACNANACCGAAGANAACCCCGANCATAATCCACTGCAGGAAATCAAGCTCTGGAAAAAAACAAAGCTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACNCCGAANCGTTCAATNTAAATCCCNCTCTAT-CTCACTT--TAA-AAAGNAT---CTT-AATGCA-GG--TAGAAT-------CAAAATCTCCAAAT-TATCT-T--T-AC-TTT-GG---AGCCAG-A-CTCGG-ACGAACT--ATTC-A-TGCTA-A----ATT---AA---GATTAGAA-CTGTAGTGCTNT----T-AATC-T-CATATGT-TTCAAAG--AAA--ATCATGTAAATCCANCTCTTT--GTA--T-T---TG-TGGAGGAAGTT--GAGAGTAC-TGAG------TATTTTNTTT-ACGCT---GTATCA-C--TA------TACTCTAGAGTTAGGAGC----AATACAAT----NCTGACAC-----TN-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TATNCGA-AAGCGAAA-ACAGC--AATA-T-TTTT-ATTT-AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAACT--GAT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTT--T--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTTCA-----TATATCTATGTGATCTGTATTTTTCTACTATGT-ATACA-TNGATCAGCAGGGTTCTACAAT-TACA---ATACTATATTCTATATTG--TTTA-NAACCG--CGTAATGATTACA-----TGTAT-TTACTT-C-ATNA-TGCA-AC-ATGTGACTTGTTTAT----TTTAGCG----TC--T-CAATATATNT---ATAGT-TCGAAACTGCATTTGTTTGCATT-TGATCTANATT-GCCTTAGTA-----------TT---TGTGT-----------GTA-C---TATT---T-GTT---TTAGCACT-CA-ATTCC-AGCT--TNA----CC----CCCCCCCCTTTT-TAT--TTTTTGTATTAATTGGTTATANNAC--TTG-ACATTCTNTCGTAAANA----TNCGTGTTTCAT-TTACCT-----TC----TCT-----CTT-GTAGCAC-GCAGAGA--GCG-AG--A-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATG
gi|1 : ATAAAGAAA-TGGATGGGAAC--CATTA----ATAAAG--CGTAGA---GAAAATCATCGTTC--TGATCCAA-CTCCA--CAAGATGTA--A--AATT-GCATGACTCCAAATTATCTAACC-AAT-ATTA-TCA-----TT---ACA-TAGAAACCA---------GGTCAT---AATTATAACAAAA--AAAAAAAACCCCAAACA-AATCCACTGCAGGAAATCAA-CTCTAGAA-----CAAAGC----------------------TTAAC---------AATAAGGAAATGGAATA----CAC-TACCTCGAATTGTTCAATG-AAATCCCCCTCTAT-CTCACTT--TAA-AAA-CAT---CTT-GATGCA-GG--TAGAAT-------CAAAATCTCAAAAT-TATTT-T--T-AC-TTA-GG---AGCCAG-A-TTCCG-ACAAACT--ATTC-A-TGCTA-A----ATT---AA---GAATAGAA--TGTAGTGCTAT----T-AATC-TTCATATGT-TTCAAAG--AAA--ATTATGTAA-TTCAGCTCTTT--GTA--T-T---TG-TGGAG-AAGTT--GAGAGTAC-TGAG------TATTTTCTTTTACGCT---GTATTA-TATTA------TACTCTAGAGTTAGAAGC----AATACAAT----CCTGACAC-----TAACACATCA-ACTCAA-TGTAGAGTTATTGTT----ATATGGT-AAGGATAATT-TATATGA-AAGCGAAA-ACAGC--AATA-T-T-------T-AGTCCAGAAAT--TTCTTGT-CG-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-ACG-TA-AATAAGT--GGT-ATATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-AATATTTGTT--T--ATA-CA-TA-CTT-CA--AC-ATTGTC-TATTGTTTAATGAGTATATCTATGTGATTTGTATTTTTCTACTGTGT-ATACA-TA--------------TACA---TACA---TTACTGTA----ATATTG--TATA-GAACCAGTTGTAATGATTACAAAATCTGTAT-TTGCTTAC-ATAATTGCA-ACAATGTGAATTGTTTAT----GTTAGTG-----CGAT-CAGTATATCT---ATAGT-TCAAAACTGCATTTGTTTG-ATTATAATGTATA-T-GTCTCAATATTGTGAGTTGTTT---TATGTTCAACACTTTAGTA-CTTGTATTTAAT-ATTTGTTTAGCACT-CA-ATTCC-AGAA--TCA----CCTTTTTTTTCCCGCTTT-TAT--TT
gi|1 : tcgTTTTAT-TTACATAATTATC----TCT-----CTT-GTAGCAC-GCAGAGGATGCG-AG--A-TTAAT-AC-AAG--CGTTTTTAGC-TTGTT-TT-TC--AT-CTTTAAAATGacataattatctctcttgtagcacgcagaggatgcgagattaatacaagcgtttttagcttgtttttcatctttaaaatg
gi|10 : tcgataaagaaatggatgggaaccattaataaagcgtagagaaaatcatcgttctgatccaactccacaagatgtaaaattgcatgactccaaattatctaaccaatattatcattacatagaaaccaggtcataattataacaaaaaaaaaaaaccccaaacaaatccactgcaggaaatcaactctagaacaaagcttaacaataaggaaatggaatacactacctcgaattgttcaatgaaatccccctctatctcactttaaaaacatcttgatgcaggtagaatcaaaatctcaaaattatttttacttaggagccagattccgacaaactattcatgctaaattaagaatagaatgtagtgctattaatcttcatatgtttcaaagaaaattatgtaattcagctctttgtatttgtggagaagttgagagtactgagtattttcttttacgctgtattatattatactctagagttagaagcaatacaatcctgacactaacacatcaactcaatgtagagttattgttatatggtaaggataatttatatgaaagcgaaaacagcaatatttagtccagaaatttcttgtcgaaagtaaaaggttctgagcctccttgtcaatgctcaattacgtaaataagtggtatattgtatagcacccgggtgtaataagaacaaaaccaatatttgtttatacatacttcaacattgtctattgtttaatgagtatatctatgtgatttgtatttttctactgtgtatacatatacatacattactgtaatattgtatagaaccagttgtaatgattacaaaatctgtatttgcttacataattgcaacaatgtgaattgtttatgttagtgcgatcagtatatctatagttcaaaactgcatttgtttgattataatgtatatgtctcaatattgtgagttgttttatgttcaacactttagtacttgtatttaatatttgtttagcactcaattccagaatcaccttttttttcccgcCTTAGTA-----------TT---TGTGT-----------GTA-C---TATT---T-GTT---TT-GCACTCCATATTCC-AGCT--TAA----CC----CCCCCCCCTTTT-TAT--ATTGT-TATTAATTGTGTATAATAC--TTGAACA-TCTTTCATAAAAA----TGCGTGTTTCAT-TT--CC-----TC----TCT-----CTT-GTAGCAC-GCAGA-A--GCG-AGATA-TTGAT-AT-AAG--C-CTTTTGCT-TTGTT-TCTTC-AAT-CTTTAAAATG
gi|11 : atgttcaacgacaCCTCTCTAT-CTCACTT--TAA-ATAGTAT---CTT-ATTGCA-GG--TAAAAT-------CAAAAT-TCCAAAT-TATTT-T--TTAC-TTTCGG---AGGCAGTA-CT--G-AC-AACT--ATTCCA-TGCTAGA----ATT---AA---GAT-ACAA--TGTAGTGCTCT----TGAATC-T-CATATGT-T-CAAAG--AAA--AT-ATGTAAATTCACCTCTTT--GTA--T-T---TGGTGGAG-AAGTT--GAGAGTAC-TGAG------CATTTTCTTcattgtatgtaaaa
gi|12 : TATCTATGTGATCTGTATTTTTCTACTATGTTATACA-TGGATCAGCA-GGTTCTACAATATATATTTATATTAT-TTCTAAACTGCATTTA-CA------TGTATTGATTACA-----TACAT-TTACCT-C-ATGA-TACA-GT-ATGTGACTATTTTGT----TTTAGCA----TC--T-C-ATATA
gi|13 : tgtacttgaaaattagtccTCTTGTATTAATTGGTTATAAGGCATTTG-AC--TCTATTGTAACGACTTTTTAATGTTTCATCTTACCT-----TTCATATCTTGCTCCTT-GTAGTACAGTAGAGA--GCGTAG--A-TTGATGAT-AAAGCC-CTTTTGGCGTTGTTCTC-TCGAAT-CTattccatgcttctaccatttttcaaccca
gi|14 : T-TATCTGA-AAGCAAAA-ACAGC--AATA-T-TTTTGATTT-AGTACAGAAAT--CTCTTGT-CG-AATATAAA-AGC-TTCTG--AGCCT------AATTGTTCTAT-TTTAAGT---G-TA-AAATACT--GAT-ATATTGTATAG--CACCAG---------------GGTTT-TAATA-AGA----AGAAAA-gtgtcgacaatctttgtatgtaatatgaaatgaatgtattctgaataacatgattgtt
gi|15 : T--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAATA-AGA----ACAAAA-CC-TATATTTGTTTAT--ATA-TA-TA-CTT-CA--AC-ATTGTC-TATTGTT-------TCTATCTATGTGATCTGTATTTTTCTACTATGT-ATACATTTGATAAGCAGGGTTCTACAAT-
gi|16 : TATTTCAT-TCACCT------C----TTA-----CTG-GTA-CAT-GTA----------AT--A-TTGATTAT-GAA--C-CTTTTAGC-TTGTT-T--TC-AAT-CCTT
gi|18 : aaaaT-GAG--C-CTGTTGGC-TTGTT-TA-TT-AAT-CTTcataattcatagtttgtacatgtatgtataattatatgcacatgcattttcaaataaaataatgttt
gi|2 : ATAAAGAAACTGGATGGGAACACCATTACTTCACAAAGTGCGTAGACACAATAATCATCGTTCAATGATCCAAACTAAAACCAAGATGTACCATCAATTCGCATGACTCCAAA-TATCTAACCCAATCATTCCTCAAGCGATTCAGACAATAGAAAACAACAACTTAAGGTCATGGTAATTATTATTACACCGAAGACAATTCCGATCATAATCCACT-CAGGAAATCAAGCTCTGGAAAAAAACAAAACTTTATTATCTTTAATATCATTCTTAACTCCCAGCAAAATAAGGAAATGGAATAACATCACGCACACCGAAACA-TCAATTTAAATCTCA-TCTATGCTTTCCTAATAACAAAAAATACACTTAAATGCAGGG--TAAGACCACTACACAAAATCTCCAAATGTATCTATAAT-ACTTTT-GGAAAAGCCAG-A-CTTGGCACGAACTAAATTC-ATTGCTA-AACATATTCAAAA---GATTAAAACCTGTAGTACTCT----A-AATCTT-CATATGTGTTCAAAAGTAAACCATCATGTAATTCCACCTCTTTTGGTAACT-TTGGTG-TGAAGAAAGTTCGAAAAGTACATGAGATGTCATGTTTTATTT-ACCATTGAGTATCACC--TAAAGAATTACTTAAGAGATAGGAGCTTCAAATACAATAATGACTGCCACATTCTTC-CACATCATACTCAATTGTAGAATTATTGTT----ATATGGTCAAGGATAATTATCTTCGAGAAACTGAA-ACAGCTTAATATT-TTTT-ATTT-AGTCCAGAAATAATTCTTGTACGAAAAGTAAATAGGTTTCTGAAAGCCTTTTACCCTTTG-TCAAAGCTAAAGTAACGTTACACTAACTAAGATAATATTGTATAGACCATCCATTGTACATAACCCACGG-TGATAACATAAATACTACAATA-CCTTGTAATTATG--TAAATATTA-TACCTT-CAAGAC-ATTGTCGTATcttataatacatagtaggtaaagataaatataaacttaattatttctgaataaaatattgtttc
gi|3 : ttaG-TAATA-AGA----ACAAAAACC-TGTATTTGTT--T--ATA-TAATA-CTTTCA--ACGATTGTT-CATTGTTCA-----TA-ATCTATGTGATCTGTATTTTTCTACTATGT-ATACA-T-GATCAGCAGGGT-------C-TACA---ATACTATATTTTATATTA--TTTCTAAACTG--C--AAT--TTACA-----TGTAT-TTACTG-CTATT--T----AC-ATGTATCTTGATTACACCATTTAACC----TC--C-CAATATAAGT---ATAGT---GAAACT--ATTTGTTTTCA----GCTCTCAATT-GCC--AGCA-----------TT--------------------TA-C----ATT---TCGTT---TT-------------------------------------TCCCCATTTT-T-T--TTTTTGTATTAATTGGTTATATGAC--TT----ATTCGTTTATACACT----TTAATGTTCAAT-CTACCT-----CA----TAT-----CTTCGTAGTAC-ATAGAGA--GCG--G--A-TTGAT-ATAAAG--C-CTTTT-GC-TTGTT-TT-CC-AATCCTTTAAAAT
gi|4 : T---CTT-AATTCA-GGCTTAGAAT-------TAAAA-ATCCGAAA-TATC----------------------CAG-AACTCGG-AACAAC---ACCC-A-TCGTACA----ATT---AGAACGATTAGAAGTTGTATTGTTATGTATT-AATC---CATATAT-TTCAAAG--GAA--CT-GTGCAAATCCAACCCGTC--GTA--TAT---GG-TGGAGGAAGTT--GCAA-----TG------------CTATTT-GCACT---G----A-C--TA------T---CTAGAATTAGAACA----AATACAAT----TCTGACAC-----CA-TAC-TCT-AAT-AA-TGATGAATTATTGTTACCAATATGAT-AAAAACAATT-AATACGA-ACTTGGAATACAA---ACTA-CATGTC-AGTT-AGTCCAG------------------AAGTAAA-AGG-TTCTG--AACTG------TTCTG-T-GATG-TCTGTT-ACG-tctttgtgatgtaatgatgaaatgaatgtatttctgaataaatattgtttaa
gi|5 : ATA-----TGTATGTTACT----ACTA-TGTATAC-ATGTGA---------------TAGCAGGGTTC--TACAATATATATTTTATATTATCAAAACTGCATTTACATGTATT-TGATCTACATTTACCTCATTA-----------TTAAGT-TGT-----------GAA-C---TATT---T-GTT---TTAGCTCT-CA-ATTCC-AGCT--CTA----CCATT-TTTTCCCATTTT-TAT--TTTT-GTATTAATTGGT-ATATGAT--TT----ATT-----GTACACT----TTAATGTT-CAT-CTACCT------A----TAT-----CTT-GTAGTAC-ACAGAGA--GCG-AG--A-TTAAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTTAAATattttgatctga
gi|6 : atgtgCTTAGTA-----------TT---TGTGT-----------GTA-C---TATT---T-GTT---TTAGCACT-CA-ATTCC-AGCT--TTAACCCCC----CCCCCCCCTTTT-TAT--TGTTTGTATTAATTGG-TATAATAC--TTG-ACATTTTA-CATAAAAA----TGCGTG-TTCAT-TTACC------TC----TCT-----CTT-GTAGCAC-GCAGAGA--GCG-AGATA-TTGAT-AT-AAG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTAAAATGtctttgtatgtaatatgaaatgaatgtatttctgaataaatattgttt
gi|7 : gttcaacaCTTAGTAA----------TT---TGTGT-----------GTAAC---TATT---T-GTT---TTAGCACT-CA-ATTCCAAGCTTATAA----CC----CCCCCCCTTTTTCTATGATTTTAGTATTAATTGGTTAGATACT--TTG-ACATTTTA-CATAAAAA----TGCGTGGTTCAT-TTATC------TC----TCT-----CTT-GTACAAC-GCAGAGA--GCG-AG--ATTTGAT-AT--AG--C-C-TTTGGC-TTGTT-TC-TC-AAT-CTTTAAAcattgtatgtaaaaatgaactacatatactgtttaatctaagatgacgg
gi|8 : ttcaacagTAGAGTTAGGAGC----AATACAAT----ACTGACAC-----TT-CACATCA-ACTCAA-TGTAGAATTATTGTT----ATATGGT-AAGGATAATT-TAT--GA-GAACGAAA-A-AGC--AATACT-TTTT-ATTTTAGTCCAGAAAT--TTCTTCT-CT-AAAGTAAA-AGG-TTCTG--AGCCT------CCTTG-TCAATGCTCAATT-GCG-TT-AATAACT--GAT-TTATTGTATAG--CACCCG---------------GG-TG-TAAT--AGA----ACAAAA-CC-TATATTTGTT--T--ATA-T--TA-CTT-CA--AC-ATTGTC-TATTGcaattggcttgtatgtaaaaatgactacatactgttaattaagatga
gi|9 : CTTAGTA-----------CT---TGTGA-----------GTA-C---TATT---T-GTT---TTAGCACT-CA-ATTCC-AGCT--TCA----CC----ATTTCCCCTTTT-TAT--TTTTTGTATCAATTGG-TATATGAC--GAG-ACATT-TTCCATAAAAA----TA-----TTCAT-TTACC------TC----TCT-----CTT-GTAGCAC-GCAGAGA--GTG-AG--A-TC--------AG--C-CTTTTGGC-TTGTT-TC-TC-AAT-CTTTGAAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT