lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 11 2 1111111 888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111 2222222 11111111 22222 33333333333 1 1 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 44444444444444444 2
lowQualScore : 3 44 3 5 2 77 5 44 00 0 1 0000000 555555555555555555555555555555555555555555555555555555555555555555555555555555 44 7777777 55 44 3 2 4444444 00000000 5555 444 3 2 2 88888888 3 2 33 44444 2 444 444 88888888888 5555 5 2 5 55 4444 99999 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 0 222 0 66 2 2 55555555555555555 1
lowQualScore : . .. . . . .. . .. .. . . ....... .............................................................................. .. ....... .. .. . . ....... ........ .... ... . . . ........ . . .. ..... . ... ... ........... .... . . . .. .... ..... ............................................................................................... . . ... . .. . . ................. .
lowQualScore : 3 00 1 5 5 55 4 66 88 4 8 0000000 444444444444444444444444444444444444444444444444444444444444444444444444444444 22 7777777 88 22 1 4 8888888 99999999 0000 111 2 5 4 55555555 1 5 22 33333 4 111 111 44444444444 0000 3 7 0 55 1111 11111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 1 555 9 88 9 9 77777777777777777 2
consensus : NNGGCCATAATAAAA-AAAA-T-CCTA-GATTC-TCATCCA--AA-TTTTTTG-AAAAAT-------TGTGG--G---GGGGGG-G-TG-----GGGCGG-A---------------------T-T-------T---------T-----ATT--T-------CAC-GAAA--AA-TGTGTCCACT-T-C-----AAACA--------TCA----CGT---TCAACGTTG-ATAGAAAATGA-CAAT--------ATGGCGGGATT--AAAAACG-GAAATT-TC---A---T---G---A---GTTGAATAC----GGAACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAAC-----TGTAAAA-----N---CAGA------TTTTT--GGT-----ANTG------A-AATAAAAA-TAG-A--AAAAAATCGGGGCGGGCG-GAAA-ATC------GG-GGCGGGCGGGGATG--AGAATCT-A-GGA---ATTTTTTTTTT---ATTATGGCCTTAA
Reference ( gi|1 ) : TCGGCCATAATAAAA-AAAA-T-CCCA-GATTC-CCATACA--AG-TTTTTTGCAAAAAT-------TGTGA--A---AAAGGG-G-TG-----GGGTGG-A---------------------T-T-------T---------T-----ATT--T-------CAC-GAAA--AA-TGTGTCCACT-T-A-----AAACA--------TCA----CAT---TCAACATTG-ATAGAAAATGA-CAAT--------ATGGCGGAATT--AAAACCG-GAAATT-TC---A---T---G---A---GTTGAATAC----GGAACCCGAATATA-TTTGAGACGTAGTTTTACACC--AAA----GAAC-----TGTAAAA-----A---CAAA------T------GAT-----AATG------A-AATAAAAA-TAGAA--AAAAAATCGGAGCAGGTGTGAAA-ATC------GG-GGCGGACAGGAATG--AGAATCT-A-GGA--TGTTTTTTTTTTTC-ATTATGGCCGTAA
gi|5 : GGCCATAATAAAA-AAGATT-TCTA-GATTC-TCAT
gi|10 : taataaaaaaaaatcctagattatcatcaaaatttttgggaaaattgtgtgggggttgggggaatttaattttatttatttcacaaaaaaatgagtccccttcaaacataacgttcaacgttgatggagaatgacaatatggtgggattaaaagcggaaatttcaggacaaattgaatacggaaaccgattatattttaaacaaagctttaaaccaaagaactacagtgtaaaatttctggattttggggggcaaaaaaaaaagaagaaaaaaagggacgggtggggGGCCATAATTGAA-AAAA-C-CCTA-GATTCTCCATtta
gi|2 : tccacttcaaacaatccagtatcatgtgcatgttccaacgctgatagataatgacaattgaccaatatggcggaattaaaaatgagaaattttatacgatgtgaaaatggaacccgaatatattttgagtagttttaaacccaaaagaactgtaaaaatttcccggattttttttcggggaggggggtgggggcgtgcaggcgagaaatcaaaggtggacggaaGGCCGTAATAAAAAAAAA-T-CCTA-GATTC-TCATTCA--AATTTTTTTTTTTAAAT-------TGTTG--G---AGGGGG-G-GG-----GGGTAT-T---------------------T-T-------T---------T-----ATT--T-------CAC-------AA-TGTGTtta
gi|6 : ttgGGCCATAATGAAA-AAAA-TACTAA-GATTC-TCACAttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|2 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattgggcgagcagcgacgaaaatcaggtggacggaaaGCCATAATAAAA-AAAT-T-CCTA-GATTT-TCATctaa
gi|3 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaCCATCATAAAA-AAAT-T-CCTA-GATTC-TCATTCA--AA-ATATTTG-AAAAAT-------T----------AGGGGG-G-AG-----GGGACG-AATTTTATT-------------T-T-------T---------T-----ATT--T-------TAT-GAAA--AA-TGTGTCCACT-T-C-----AAACA--------TCC----CAT---TCAACGTTG-ATAGAAAATGA-CAAT--------ATGACAGGATT--AAA-------------C---A---T---GACAA---GTTGGATAC----AGAACTCGATTATA-TTTGAAACATATTTTTAAATC--ACAGATCGAAT-----TGTATAATTT--C---CAGA------TTTTTC-GGT-----AA--------A-AA-AAAAA-T------TAAAAATTGGGGCGGGCGGGAAA-ATC------AG-GGCAGGCGGAAAAG--AGAATCT-A-GGA---ATTTTTTTTTTCA-ACCATGGCC-TAAtt
gi|4 : CATAATAAAA-AATA-T-TCCTTGATTC-TCATCCATTAT-ATTTTTG-AAAAAT-------GTTGA--G---G--GGG-G-GG-----GGGCGG-A---------------------T-T-------T---------TTTTTTATT--T-------CAT-GAAA--AA-TGAGTCCACT-T-GTCTTCAAACA--------TCA----CGT---TCAATGTTG-ATAAACAATGA-CTAT--------TTGGTGGGATC--AAAA-------ATT-TT---A---T---G---ACGAGTTGAATAT----GGAACCTGATTATA-TTTGAGATGTAGTTTTAAACC--AAA----AAAC-----TGTAAAA-----ATTTCCGA------TTTTTTGGTT-----AA--------A-AAAAAAAA-TAATA--ATAATAT---AATAA----AAAATATT------GG-TGCG---AGG-ATT--AGAATCT-A-GGA---ATTTGTTT------ATTATGGCt
gi|5 : TAATAAAA-AAAAAT-CCTA-GATTA-TCAT-CA--AA-ATTTTTGGGAAAAT-------TGTGT--G------GGG-G-TT-----GGGGGA-A---------------------T-T-------TAATTTTATTT-----ATT--T-------CAC-AAAA--AAATGAGTCCCCT-T-C-----AAACA--------TAA----CGT---TCAACGTTG-ATGGAGAATGA-CAAT--------ATGGTGGGATT--AAAAGCG-GAAATT-TC---A---G---GACAA---ATTGAATAC----GGAAACCGATTATA-TTTTAAACAAAGCTTTAAACC--AAA----GAACTACAGTGTA-------------AAA------TTTCTG-GAT-----TTTGGGGGGCA-AA-AAAAA-AAGAA--GAAAAA--------------AA-----------GG-GACGGGTGGGGATG--AGAATCT-A-GAA---ATCTTTTTT-----ATTATGGCCTTAtt
gi|14 : TAATAAAT-AAT--T-CATA-GATTC-TCATCTA--AA-TTTTTGG-AAAAAT-------TGTGG--G---AGATGG-A-TG-----AGGCGA-A---------------------T-TATATTTTT---------T-----ATT--T-------CAA-TAAA--AA-TGTGTCCACT-T-CC----AAACA--------TCT----CGT---TAAACGTTG-CTAAAAAATGA-CAAT--------GTATTTGGATT--AAAAAC---AAATT-TT---A---TGCCG---A---GTTGAATGC----GGAACCTGATTATA-
gi|19 : ccATAAAA-AAAATT-CCTA-GATTC-TCATCTA--AA-ATTTTTGCAAAATTGTGGTGGTGTGG--G---AGAGGGTG-TGT----GTGTG----------------------------------T---------T-----ATT--T-------TAC-GAAA--AT-TGTACCCACG-T-A-----TAATA--------T-------AT---TC
gi|15 : AAA-AAAT-T-CTTA-GATTC-TCATCCA--AA-TTTTTGG-AAGAAT-------TGTGGCTG---GAGGGG-G-TG-----GGG-GC-AAATTCTATT------------T-T-------T---------T-----ATT--T-------TAC-GCAA--AA-TGTGTCCACT-T-C-----AAACA--------TCA----CAT---TCAATGTTG-ACAGAAATTGA-CAAT--------ATGATGGGATT--AAAAACA-GAAATT-TC---A---T---GACAA---ATTGAATAC----GGAACttttaaaaaaatgttgc
gi|22 : ttttAAA-AAAT-T-CCTA-GATTC-TCATCCA--AA-TTTTTTG-AAATAT-------TG
gi|16 : AAT-T-CTTA-GATTC-TCATCCA--AA-TTTT--G-AAGAAT-------TGTGG--GCTGGAGGGG-G-TG-----GGCCGGCAAATTTCTATT-----------T-T-------T---------T-----ATT--T-------TAC--CAA--AA-TGTGTCCACT-T-C-----AAACA--------TCA----CAT---TC-ATGTTGAACAGAAATTGACCAAT--------ATGATGGGATT--AAAA-CA-GAAATTCTA---A---T---GAC-A---ATTGAATAC----GGAACgtgggtggttgggattt
gi|8 : A-GATTC-TCATCCA--AA-TTTT--GGAAAAAT-------TG-GG--A---GATGGG-A-TGAGGATGGGCGA-A---------------------TAT-------T---------T-----ATT--TTTATT--CAA-TAAA--AA-TGTGTCCACT-TCC-----AAACAG-------TCT----CGT---TAAACGTTG-CTAAAAAATGA-ACAT--------GTTTTGGGATT--AAAAAC---AAATT-T----A---TGCCG---A---G-TGAATGC----GGAA-CTGATTATA--TTGAGGCGTAATTTTAAACC--AAA-----AAC-----CTTAAAA-----ATTTCTGGGTTTTTT------GGT-------TG---------ATTAAAA-TATAATTAAAAAATTG------------------------GG-GGTGG-C-GGAATG--AGAATCT-A-G
gi|7 : aattcat-GATTC-TCATCCA--AA-TTTTCT-CAAAAAT-------TGTGA--C------GGG-G-TG-----GGGTGG-AGACAAATTTTGTTTCTTTATCT-T-------T---------T-----ATT--T-------TAC-GAAA--TA-TGTGTCCACT-T-C-----AAACA--------TCA----CGT---CCAACGTTG-ATAGAAAATGA-CAAT--------ATGGCGGGATT--AAAGATG-GAAATT-TCAAGA---C---G---A---ATTGAATAC----GAAATTT-ATTGTA-TTAGCCACGCAGTCTTAAACC--AAACTT-AAAC-----TTTAAAATTCC-C---CGAT------T------TTT-------TG-----------AAAAA-T--------AAAATCGGGGCGGGTGAGAAA-ATT------GG-GGTGGGCGGGGATG--AGAATCT-A-GGAATTGTT
gi|9 : -GATTC-TCACCCA--AT-TTTTTTTTAAA--T-------TGTG--------------G-TT-----GGGTGA-A---------------------T-T-------T---------T-----ATT--TTTTCTTTCAT-GAAA--AA-TGTG----------------------------TCA----CAT---TCAACGTTG-ATAGAAAATTA-CAAT--------ATGGCAAGATT--AAAAGCG-GAAATT-TC---A---T---GACAA---GTTGAATAC----CG-ACCCAATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAAC-----TGTAAAA-----
gi|17 : AAAAT-------TATGA--A---ATTGAG-GATGAAA--GTGAGG-A---------------------T-T-------T---------G-----AATGCC-------CACTGAAATGGA-CGAGTTTTCTCT-A-----TAATA---------CA----TAT-----ACCACTG-A-----AATGA-CAAT--------ATA-CGGAACT--AAAAACA-AAAATT-TC---A---T---G---ACGAATTGAATAT----GGAACTCGATTATA-TTTGAGATGtatcctgctttttggggtaaactttttttttaaaaagttggggtgggccgggatgagaatatagggatgtttttattatgacct
gi|18 : GG-A-TG-----GGGCGA-A---------------------T-TATATTTTT---------T-----ATT--T-------TAC-GAAA--AA-TGTGTCCACT-T-CC----AAACA--------TCA----CGT---TAAACGTTG-CTAAAAAATGA-CAAT--------GTTTTTGGATT--AAAAAC---AAATT-TC---A---TGCCG---A---GTTGAATGC----GGAACCTGATTATA-
gi|11 : ggttGTGTCCACA-T-C-----AACTA--------TCA----TTC---TCGACGTTG-ACAGAAAATGA-CAAT--------ATGGCAGA-TT--AAAAGCG-GAAATT-TT---A---T---GGCAA---GTTGAATAC----CGAACCCAATTGTA-TTTGAGACATACTTTTAGACC--AAA----GAAC-----TGTAAAA-------------------TTCTG--GATTTTTTAGTA------A-AATTAAAA-TT--A--AACAAATCAGGGCGGGCATGAAA-ATCAGCCTGAG-GGCAGGTGGGGATG--AGAACCG-A-G
gi|10 : TCCACT-T-C-----AAACAATCCAGTATCATGTGCATGTTCCAACGCTG-ATAGATAATGA-CAATTGACCAATATGGCGGAATT--AAAAATGAGAAATT-TT---A---TAC-G---A---TGTGAAAAT----GGAACCCGAATATATTTTGA---GTAGTTTTAAACCCAAAA----GAAC-----TGTAAAA-----A---
gi|20 : TCCACT-T-T-----AAACA--------TCG----CAG---TCAACGC---ACAG--------TAAT--------ATGGCGGGATTTCAGGACC--------------------------A---GTTGAACAC----CGAATTTGATTATA-TTTGAGACATAATTTtttcccggattttttttcggggaggggggtgggggcgtgcaggcgagaaatcaaaggtggacggaaatggagaatctagggttttttcaattatggcctta
gi|12 : ttcttttcttttttcatcacttgcACT-C-T-----AAACA--------TCA----CAT---TCAACATTG-ATAGAAACTGA-CAAT--------GTGGTGTGATT--AAAAACG-CAAATT-TC---A---TGACG---A---GTTGAACAC----AGAACCCAATTATA-TTTGAGACATAGTTTTAAACA--AAA----GAAC-----TGTAAAATT---C---CA---------------GAT-----TTTC------G-GGTAAACA--AACA--AAAAAAT---------TTTAAAA-ATA------GG-AACGGGCGAGGATA--AGAATCT-A-GGA--ACTTTTTTaaacc
gi|13 : ACT-T-C-----TAACA--------TCA----CGT---TCAATATTG-ACCGAAAATGA-CTGT--------ATGGTGGGATT--GATAACG-GAAATT-TC---ATGTT---G---A---GTTGAATACCAATTAAACCCTATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAAC-----TGTAAAA-----gatca
gi|21 : caAAATGA-CAAT--------ATA-CGGAACT--AAAAACA-AAAATT-TC---A---T---G---ACGAATTGAATAT----GGAACTCGATTATA-Ttttctggatttttgattaaaaaaatttaaatttatacaataggagcaggtggagattagga
gi|2 : AA----GAAC-----TGTAAAATTTTGG---GATA------TTTTT--GGT-----AAAA------ATAATAAAAATTAGAA--AAAAAATAGGGGCAGGTG--------------------------GGAATG--AAAATCT-A-GGA---ATTTTTTT------ATTATGGC
gi|6 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtGAGCAGCGACGAAA-ATC------AG-G-TGGACGGAAATGTGAGAATCTTA-GTA--T------TTTTTTC-ATTATGGCCCTAAtt
gi|10 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattgggcGCAGGCGAGAAA--TC------AAAGGTGGACGGAAATGG-AGAATCT-A-GGG---------TTTTTTCAATTATGGCCTTA
gi|9 : tccacttcaaacaatccagtatcatgtgcatgttccaacgctgatagataatgacaattgaccaatatggcggaattaaaaatgagaaattttatacgatgtgaaaatggaacccgaatatattttgagtagttttaaacccaaaagaactgtaaaaatttcccggattttttttcggggaggggggtgggggcgtAAA-GTT------GG-GGTGGGCCGGGATG--AGAATAT-AGGGA--TGTTTTT--------ATTATGACC
gi|23 : gattctcacccaatttttttttaaattgtggttgggtgaattttattttttctttcatgaaaaatgtgtcacattcaacgttgatagaaaattacaatatggcaagattaaaagcggaaatttcatgacaagttgaataccgacccaattatatttgagacatagttttaaaccaaagaactgtaaaatatcctgctttttggggtaaactttttttttaaAAA-ATC------GA-GGTGGACGGGGATG--AGAATCT-A-GGA---ATTTTTTTTTT---ATTATGACt
gi|3 : GAATG--AGAATCT-A-GGA---ATTTTTTT
gi|2 : ccatcatGAATG--AGAATCT-A-GGA-------TTTTTTTTT-ATTACGGCCaaaatatttgaaaaattaggggggaggggacgaattttattttttattttatgaaaaatgtgtccacttcaaacatcccattcaacgttgatagaaaatgacaatatgacaggattaaacatgacaagttggatacagaactcgattatatttgaaacatatttttaaatcacagatcgaattgtataatttccagatttttcggtaaaaaaaaaattaaaaattggggcgggcgggaaaatcagggcaggcggaaaagagaatctaggaattttttttttcaaccatggcctaat
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111111 555555555555555555555555555555555555555555555555555555 222222222222222 11111111 33333333333 1111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111111 2222 11
lowQualScore : 4 22 3 3 3 44 3 2 3 44 111111 555 1 77777 555 6 222222222222222222222222222222222222222222222222222222 555555555555555 0 3 8888888 99999999 2 8888888 2 00000000 2 999 2 333 333 44444444444 4444 2 44 2222 88888 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4444444 0 3 44 3 3333 22
lowQualScore : . .. . . . .. . . . .. ...... ... . ..... ... . ...................................................... ............... . . ....... ........ . ....... . ........ . ... . ... ... ........... .... . .. .... ..... ....................................................................................... ....... . . .. . .... ..
lowQualScore : 4 22 6 6 1 22 1 2 1 22 000000 444 6 11111 000 2 555555555555555555555555555555555555555555555555555555 111111111111111 8 1 9999999 11111111 5 1111111 5 33333333 4 888 2 999 999 77777777777 7777 5 66 9999 33333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5555555 2 3 66 3 5555 22
consensus : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGA---------A-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---A---T---G---A---GTTGAATAC----GGAACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAAC-----TGTAAAATTT--CC-----GGA-TTTTT-GG-T--A-TAA-AATAAAA----AT-AN-AAA-----AAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
Reference ( family-4078 ) : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGG---------A-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---A---T---G---A---GTTGAATAC----GGAACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAAC-----TGTAAAA-----NC-----AGA-TTTTT-GG-T--ANTGA-AATAAAA----AT-AG-AAA-----AAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
gi|1 : GGCCATAATAAAA-AAAA-T-CC-CAGATTCCCATACAA-G--T-TTTTTGCAAAAATTGTG--A--A---AA---AGGGGTG-----GG---G-TGG---------A-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----A-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAAATGA--------CAATATGGCGGAATTAAAACCG-GAAATT-TC---A---T---G---A---GTTGAATAC----GGAACCCGAATATA-TTTGAGACGTAGTTTTACACC--AAA----GAAC-----TGTAAAA-----AC-----AAA-----T-GA-T--AATGA-AATAAAA----AT-AGAAAA-----AAAATCGGAGCA----GGT-GTG-----AAAATC------GGGGCGGACAGGAAT-G--AGAATCT-AGGATGTTTTTTTTTTTCATTATGGCCGTAA
gi|10 : tcTCCACTT-----C-AAACAATCCAGTA-TCATGTGCATGTTCCAACGCTG-ATAGATAATGACAATTGACCAATATGGCGGAATTAAAAATGAGAAATT-TT---A---TAC-G---A---TGTGAAAAT----GGAACCCGAATATATTTTGA---GTAGTTTTAAACCCAAAA----GAAC-----TGTAAAAATTTCCC-----GGA-TTTTT----T--TTCGG---------------GG-AGG-----GGGGTGGGGGCGTGCAGGC-G-A-----GAAATCA-----AAGGTGGACGGAAATGG--AGAATCT-AGGG----TTTTTTCA--ATTATGGCCTTA
gi|11 : GTGTCCACAT-----C-AACT--------A-TCATT-------CTCGACGTTG-ACAGAAAATGA--------CAATATGGCAG-ATTAAAAGCG-GAAATT-TT---A---T---GGCAA---GTTGAATAC----CGAACCCAATTGTA-TTTGAGACATACTTTTAGACC--AAA----GAAC-----TGTAAAATT---CT-----GGA-TTTTT----T--AGTAA-AATTAAA----AT--T-AAA-----CAAATCAGGGCG----GGC-ATG-----AAAATCAGCCTGAGGGCAGGTGGGGAT-G--AGAACCG-AG
gi|12 : ACTC-----T-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAACTGA--------CAATGTGGTGTGATTAAAAACG-CAAATT-TC---A---TGACG---A---GTTGAACAC----AGAACCCAATTATA-TTTGAGACATAGTTTTAAACA--AAA----GAAC-----TGTAAAATT---CC-----AGA-TTTTC-GG-----------GTAAAC----AA-AC-AAA-----AAAATT------------T-T-A-----AAAATA------GGAACGGGCGAGGAT-A--AGAATCT-AGGA-ACTTTTTT
gi|13 : ACTT-----C-TAAC--------A-TCACG-------TTCAATATTG-ACCGAAAATGA--------CTGTATGGTGGGATTGATAACG-GAAATT-TC---ATGTT---G---A---GTTGAATACCAATTAAACCCTATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAAC-----TGTAAAATTT--CT-----GGA-TTTTT-G-----ATTAA----AAAA----AT-TT-AAATTTATACAATAGGAGCA----GGT-G-G-----AGAgatca
gi|14 : caTAATAAAT-AAT--T-CA-TAGATTCTCATCTAA-A--T-TTTTGG-AAAAATTGTG--G--G---AG---ATGGATG-----AG---G-CGA---------ATTATATTT-T-------T---------T---------------ATTT-------C-------AATAAAAA-TGTGTCCACTTC----C-AAAC--------A-TCTCG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTATTTGGATTAAAAAC---AAATT-TT---A---TGCCG---A---GTTGAATGC----GGAACCTGATTATA-ttagga
gi|15 : ccAAA-AAAT-T-CT-TAGATTCTCATCCAA-A--T-TTTTGG-AAGAATTGTG--GCTG---GA---GGGGGTG-----GG---GGCAA---------A-------T-TCTATTTTT---------T---------------ATTT-------T-------ACGCAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTCAATGTTG-ACAGAAATTGA--------CAATATGATGGGATTAAAAACA-GAAATT-TC---A---T---GACAA---ATTGAATAC----GGAAC
gi|16 : ttttAAT-T-CT-TAGATTCTCATCCAA-A--T-TTT--G-AAGAATTGTG--G--GCTGGA---GGGGGTG-----GG---C-CGGCAAATTTCTA-------T-T-------T---------TTT-------------ATTT-------T-------ACCAAAA--TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTC-ATGTTGAACAGAAATTGAC-------CAATATGATGGGATT-AAAACA-GAAATTCTA---A---T---GAC-A---ATTGAATAC----GGAAC
gi|17 : AAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---A---T---G---ACGAATTGAATAT----GGAACTCGATTATA-TTTGAGATG
gi|18 : aaaattatgaaattgaggatgaaagtgaggatttgaatgcccactgaaatggacgagttttctctataatacatataccactgGGATG-----GG---G-CGA---------A-------T-TATATTTTT---------T---------------ATTT-------T-------ACGAAAAA-TGTGTCCACTT-----CCAAAC--------A-TCACG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTTTTTGGATTAAAAAC---AAATT-TC---A---TGCCG---A---GTTGAATGC----GGAACCTGATTATA-
gi|19 : ggttATAAAA-AAAATT-CC-TAGATTCTCATCTAA-A--A-TTTTTG-CAAAATTGTG--G--T---GGTGTGGGAGAG-----GGTGTG-TGT---------G-------T-G-------T---------T---------------ATTT-------T-------ACGAAAAT-TGTACCCAC
gi|2 : GGCCGTAATAAAAAAAAA-T-CC-TAGATTCTCATTCAA-ATTT-TTTTTT-TTAAATTGTT--G--G---AG---GGGGGGG-----GG---G-TAT---------T-------T-T-------T---------T---------------ATTT-------C-------AC----AA-TGTGTgtataatatattcttttaaaaaaatgttgc
gi|2 : ttgAA----GAAC-----TGTAAAA-----TTTTGGGATA-TTTTT-GG-T--AAAAATAATAAAA----ATTAG-AAA-----AAAA---------------------------ATA------GGGGCAGGTGGGAAT-G--AAAATCT-AGGA-A---TTTTTTT--ATTATGGCTTttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|20 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtTCCACTT-----T-AAAC--------A-TCGCA-------GTCAACGC---ACAG---------------TAATATGGCGGGATT---------------TC---A---G---G---ACCAGTTGAACAC----CGAATTTGATTATA-TTTGAGACATAA-TTTAAACC--
gi|21 : ttcttttcttttttcatcacttgcAAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---A---T---G---ACGAATTGAATAT----GGAACTCGATTATA-T
gi|22 : AAA-AAAT-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAATAT--TG--G--T---GG---GTGGTTG-----GG---
gi|23 : -----AAAATC------GAGGTGGACGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGACattt
gi|3 : CCATCATAAAA-AAAT-T-CC-TAGATTCTCATTCAA-A--A-TATTTG-AAAAATTA-------G---GG---GGGAG-G-----GG---A-CGA---------A-------T-T-------T---------T---------------ATTT-------TTTATTTTATGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCCCA-------TTCAACGTTG-ATAGAAAATGA--------CAATATGACAGGATTAAACATG-------------A---C---A---A---GTTGGATAC----AGAACTCGATTATA-TTTGAAACATATTTTTAAATC--ACAGATCGAAT-----TGTATAATTT--CC-----AGA-TTTTTCGG-T--A---A-AAAAAAA----AT-----TA-----AAAATTGGGGCG----GGCGG-G-----AAAATC------AGGGCAGGCGGAAAA-G--AGAATCT-AGGA-ATTTTTTTTTTCAACCATGGCCT
gi|4 : CATAATAAAA-AATA-TTCC-TTGATTCTCATCCATTA--TATTTTTG-AAAAAT-GTT--G--A---GG---GGGGG-G-----GG---G-CGG---------A-------T-T-------T---------TTTTTT----------ATTT-------C-------ATGAAAAA-TGAGTCCACTTGTCTTC-AAAC--------A-TCACG-------TTCAATGTTG-ATAAACAATGA--------CTATTTGGTGGGATCAAAAA-------TT-TT---A---T---G---ACGAGTTGAATAT----GGAACCTGATTATA-TTTGAGATGTAGTTTTAAACC--AAA----AAAC-----TGTAAAAATT--TC-----CGATTTTTT-GGTT--AA--A-AAAAAAA----AT-AATAAT-----AATAT-----------AAT-A-A-----AAAATA------TTGGT--GCGAGGAT-T--AGAATCT-AGGA-A---TTTGTTT--ATTATGGCTTaat
gi|5 : TAATAAAA-AAAAAT-CC-TAGATTATCATCAAA-A--T-TTTTGG-GAAAATTGTG--T--G---GG---GGT--TG-----GG---G--GA---------A-------T-T-------TAATTTTATTT---------------ATTT-------C-------ACAAAAAAATGAGTCCCCTT-----C-AAAC--------A-TAACG-------TTCAACGTTG-ATGGAGAATGA--------CAATATGGTGGGATTAAAAGCG-GAAATT-TC---A---G---GACAA---ATTGAATAC----GGAAACCGATTATA-TTTTAAACAAAGCTTTAAACC--AAA----GAACTACAGTGTAAAATTT--CT-----GGA-TTTTG-GG-G--GGCAA-AA-AAAA----A--AG-AAG-----AAAA------------------------AAA---------GGGACGGGTGGGGAT-G--AGAATCT-AGAA-A--TCTTTTTT--ATTATGGCCTTA
gi|6 : GGGCG----AGC-A-GCGACGAAAATC------AGG-TGGACGGAAAT-GTGAGAATCTTAGTA----TTTTTTTC--ATTATGGCCCTAA
gi|7 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattGATTCTCATCCAA-A--T-TTTCTC-AAAAATTGTGACG--G---GG---TGGGGTG-----GA---GACAA---------A-------T-T-------T---------TGTTTCTTTATCTTTTATTT-------T-------ACGAAATA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TCCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAGATG-GAAATT-TCAAGA---C---G---A---ATTGAATAC----GAAATTT-ATTGTA-TTAGCCACGCAGTCTTAAACC--AAACTT-AAAC-----TTTAAAATTC--CC-----CGA-TTTTT---------TG-----AAAA----AT------------AAAATCGGGGCG----GGT-GAG-----AAAATT------GGGGTGGGCGGGGAT-G--AGAATCT-AGGA-ATTGTT
gi|8 : AA-T-TCATAGATTCTCATCCAA-A--T-TTTG-G-AAAAATTG-G--G--A---GA---TGGGATGAGGATGG---G-CGA---------A-------TAT-------T---------T---------------ATTTTTATT--C-------AATAAAAA-TGTGTCCACTT-----CCAAAC--------AGTCTCG-------TTAAACGTTG-CTAAAAAATGA--------ACATGTTTTGGGATTAAAAAC---AAATT-T----A---TGCCG---A---G-TGAATGC----GGAA-CTGATTATA--TTGAGGCGTAATTTTAAACC--AAA-----AAC-----CTTAAAA-----ATTTCTGGGT-TTTTT-GG-TTGATTAA-AATATAA----TT-----AA-----AAAATTGGGGGT----GGC-G-G-----AA
gi|9 : GATTCTCACCCAA-T--T-TTTTTT-TAAA-TTGTG--G----------------TT-----GG---G-TGA---------A-------T-T-------T---------T---------------ATTTTTTCTTTC-------ATGAAAAA-TGTG----------------------------TCACA-------TTCAACGTTG-ATAGAAAATTA--------CAATATGGCAAGATTAAAAGCG-GAAATT-TC---A---T---GACAA---GTTGAATAC----CG-ACCCAATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAAC-----TGTAAAATAT--CC-----TGC-TTTTT-GG----------GGTAAACTTTTTT-TT-TAA-----AAAGTTGGGGTG----GGC--------------C----------------GGGAT-G--AGAATAT-AGGG-A---TGTTTTT--ATTATGACCTtgagaatctag
Alignments
lowQualScore : 11 111111 111 1111111 555555555555555555555555555555555 222222222222222 11111111 33333333333 1111 77777777777777777777777777777777777777777777777777777777777777777777777 1111111 2222 11
lowQualScore : 4 22 3 3 3 44 3 2 3 44 111111 555 1 77777 000 6 0000000 3 222222222222222222222222222222222 555555555555555 0 3 8888888 99999999 2 8888888 2 00000000 2 999 2 333 88888888888 4444 2 44 2222 88888 3 777 3 44 33333333333333333333333333333333333333333333333333333333333333333333333 4444444 0 3 44 3 3333 22
lowQualScore : . .. . . . .. . . . .. ...... ... . ..... ... . ....... . ................................. ............... . . ....... ........ . ....... . ........ . ... . ... ........... .... . .. .... ..... . ... . .. ....................................................................... ....... . . .. . .... ..
lowQualScore : 4 22 6 6 1 22 1 2 1 22 000000 444 6 11111 000 2 0000000 1 444444444444444444444444444444444 111111111111111 8 1 9999999 11111111 5 1111111 5 33333333 4 888 2 999 66666666666 7777 5 66 9999 33333 3 888 3 66 44444444444444444444444444444444444444444444444444444444444444444444444 5555555 2 3 66 3 5555 22
consensus : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TTTCCGGA-T--TTTT----GGT-A-TAAA--ATAAAAA----T-A-TA---AA-----AAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
Reference ( family-4078 ) : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TTTCCGGA-T--TTTT----GGT-A-TAAA--ATAAAAA----T-A-NA---AA-----AAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
gi|1 : GGCCATAATAAAA-AAAA-T-CC-CAGATTCCCATACAA-G--T-TTTTTGCAAAAATTGTG--A--A---AA---AGGGGTG-----GG---G-TGGA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----A-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAAATGA--------CAATATGGCGGAATTAAAACCG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGAATATA-TTTGAGACGTAGTTTTACACC--AAA----GAAC-----TGT-AAAA-----ACAAA-------T----GATAA-TGAA--ATAAAAA----T-AGAA---AA-----AAAATCGGAGCA----GGT-GTG-----AAAATC------GGGGCGGACAGGAAT-G--AGAATCT-AGGATGTTTTTTTTTTTCATTATGGCCGTAA
gi|10 : tcTCCACTT-----C-AAACAATCCAGTA-TCATGTGCATGTTCCAACGCTG-ATAGATAATGACAATTGACCAATATGGCGGAATTAAAAATGAGAAATT-TT---ATAC-G---A---TGTGAAAATGGA----ACCCGAATATATTTTGA---GTAGTTTTAAACCCAAAA----GAAC-----TGT-AAAAATTTCCCGGA-T--TTTTTTTCGG-----------------------G-GA---GG-----GGGGTGGGGGCGTGCAGGC-G-A-----GAAATCA-----AAGGTGGACGGAAATGG--AGAATCT-AGGG----TTTTTTCA--ATTATGGCCTTA
gi|11 : GTGTCCACAT-----C-AACT--------A-TCATT-------CTCGACGTTG-ACAGAAAATGA--------CAATATGGCAG-ATTAAAAGCG-GAAATT-TT---AT---GGCAA---GTTGAATACCGA----ACCCAATTGTA-TTTGAGACATACTTTTAGACC--AAA----GAAC-----TGT-AAAA---TTCTGGA-T--TTTT------T-AGTAAA--ATTAAAA----T---TA---AA-----CAAATCAGGGCG----GGC-ATG-----AAAATCAGCCTGAGGGCAGGTGGGGAT-G--AGAACCG-AG
gi|12 : ACTC-----T-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAACTGA--------CAATGTGGTGTGATTAAAAACG-CAAATT-TC---AT---G---ACGAGTTGAACACAGA----ACCCAATTATA-TTTGAGACATAGTTTTAAACA--AAA----GAAC-----TGT-AAAA---TTCCAGA-T--TTTC----GG----------GTAAACA----A-A-CA---AA-----AAAATT------------T-T-A-----AAAATA------GGAACGGGCGAGGAT-A--AGAATCT-AGGA-ACTTTTTT
gi|13 : ACTT-----C-TAAC--------A-TCACG-------TTCAATATTG-ACCGAAAATGA--------CTGTATGGTGGGATTGATAACG-GAAATT-TC---AT---GTTGA---GTTGAATACCAATTAAACCCTATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TTTCTGGA-T--TTTT----GAT---TAA-----AAAAA----T-T-TA---AATTTATACAATAGGAGCA----GGT-G-G-----AGAgatca
gi|14 : caTAATAAAT-AAT--T-CA-TAGATTCTCATCTAA-A--T-TTTTGG-AAAAATTGTG--G--G---AG---ATGGATG-----AG---G-CGAATTATATTT-T-------T---------T---------------ATTT-------C-------AATAAAAA-TGTGTCCACTTC----C-AAAC--------A-TCTCG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTATTTGGATTAAAAAC---AAATT-TT---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA-ttagga
gi|15 : ccAAA-AAAT-T-CT-TAGATTCTCATCCAA-A--T-TTTTGG-AAGAATTGTG--GCTG---GA---GGGGGTG-----GG---GGCAAA-------T-TCTATTTTT---------T---------------ATTT-------T-------ACGCAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTCAATGTTG-ACAGAAATTGA--------CAATATGATGGGATTAAAAACA-GAAATT-TC---AT---GACAA---ATTGAATACGGA----AC
gi|16 : ttttAAT-T-CT-TAGATTCTCATCCAA-A--T-TTT--G-AAGAATTGTG--G--GCTGGA---GGGGGTG-----GGCCGG-CAAA-------T-T-------TCTATTTTT-T---------------ATTT-------T-------ACCAAAA--TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTC-ATGTTGAACAGAAATTGAC-------CAATATGATGGGATT-AAAACA-GAAATTCTA---AT---GAC-A---ATTGAATACGGA----AC
gi|17 : AAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATA-TTTGAGATG
gi|18 : aaaattatgaaattgaggatgaaagtgaggatttgaatgcccactgaaatggacgagttttctctataatacatataccactgGGATG-----GG---G-CGAA-------T-TATATTTTT---------T---------------ATTT-------T-------ACGAAAAA-TGTGTCCACTT-----CCAAAC--------A-TCACG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTTTTTGGATTAAAAAC---AAATT-TC---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA-
gi|19 : ggttATAAAA-AAAATT-CC-TAGATTCTCATCTAA-A--A-TTTTTG-CAAAATTGTG--G--T---GGTGTGGGAGAG-----GGTGTG-TGTG-------T-G-------T---------T---------------ATTT-------T-------ACGAAAAT-TGTACCCAC
gi|2 : GGCCGTAATAAAAAAAAA-T-CC-TAGATTCTCATTCAA-ATTT-TTTTTT-TTAAATTGTT--G--G---AG---GGGGGGG-----GG---G-TATT-------T-T-------T---------T---------------ATTT-------C-------AC----AA-TGTGTgtataatatattcttttaaaaaaatgttgc
gi|2 : ttgAA----GAAC-----TGT-AAAA--TTTTGGGA-TATTTTT----GGT-A-AAAATAATAAAAA----T---TA---GA-----AAAA-------------------------AAATA------GGGGCAGGTGGGAAT-G--AAAATCT-AGGA-A---TTTTTTT--ATTATGGCTTttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|20 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtTCCACTT-----T-AAAC--------A-TCGCA-------GTCAACGC---ACAG---------------TAATATGGCGGGATT---------------TC---AG---G---ACCAGTTGAACACCGA----ATTTGATTATA-TTTGAGACATAA-TTTAAACC--
gi|21 : ttcttttcttttttcatcacttgcAAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATA-T
gi|22 : AAA-AAAT-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAATAT--TG--G--T---GG---GTGGTTG-----GG---
gi|23 : -----AAAATC------GAGGTGGACGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGACattt
gi|3 : CCATCATAAAA-AAAT-T-CC-TAGATTCTCATTCAA-A--A-TATTTG-AAAAATTA-------G---GG---GGGAG-G-----GG---A-CGAA-------T-T-------T---------T---------------ATTT-------TTTATTTTATGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCCCA-------TTCAACGTTG-ATAGAAAATGA--------CAATATGACAGGATTAAACATG-------------AC---A---A---GTTGGATACAGA----ACTCGATTATA-TTTGAAACATATTTTTAAATC--ACAGATCGAAT-----TGT-ATAA--TTTCCAGA-T--TTTTC---GGT-A--AAA--A-AAAAA----T--------TA-----AAAATTGGGGCG----GGCGG-G-----AAAATC------AGGGCAGGCGGAAAA-G--AGAATCT-AGGA-ATTTTTTTTTTCAACCATGGCCT
gi|4 : CATAATAAAA-AATA-TTCC-TTGATTCTCATCCATTA--TATTTTTG-AAAAAT-GTT--G--A---GG---GGGGG-G-----GG---G-CGGA-------T-T-------T---------TTTTTT----------ATTT-------C-------ATGAAAAA-TGAGTCCACTTGTCTTC-AAAC--------A-TCACG-------TTCAATGTTG-ATAAACAATGA--------CTATTTGGTGGGATCAAAAA-------TT-TT---AT---G---ACGAGTTGAATATGGA----ACCTGATTATA-TTTGAGATGTAGTTTTAAACC--AAA----AAAC-----TGTAAAAA--TTTCCGAT-T--TTTT----GGT-T-AAAA--AAAAAAA----TAA-TA---AT-----AATAT-----------AAT-A-A-----AAAATA------TTGGT--GCGAGGAT-T--AGAATCT-AGGA-A---TTTGTTT--ATTATGGCTTaat
gi|5 : TAATAAAA-AAAAAT-CC-TAGATTATCATCAAA-A--T-TTTTGG-GAAAATTGTG--T--G---GG---GGT--TG-----GG---G--GAA-------T-T-------TAATTTTATTT---------------ATTT-------C-------ACAAAAAAATGAGTCCCCTT-----C-AAAC--------A-TAACG-------TTCAACGTTG-ATGGAGAATGA--------CAATATGGTGGGATTAAAAGCG-GAAATT-TC---AG---GACAA---ATTGAATACGGA----AACCGATTATA-TTTTAAACAAAGCTTTAAACC--AAA----GAACTACAGTGT-AAAA--TTTCTGGA-T--TTTG----GGG-G-GCAA--A-AAAAA----A-A-GA---AG-----AAAA------------------------AAA---------GGGACGGGTGGGGAT-G--AGAATCT-AGAA-A--TCTTTTTT--ATTATGGCCTTA
gi|6 : GGGCG----AGC-A-GCGACGAAAATC------AGG-TGGACGGAAAT-GTGAGAATCTTAGTA----TTTTTTTC--ATTATGGCCCTAA
gi|7 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattGATTCTCATCCAA-A--T-TTTCTC-AAAAATTGTGACG--G---GG---TGGGGTG-----GA---GACAAA-------T-T-------T---------TGTTTCTTTATCTTTTATTT-------T-------ACGAAATA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TCCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAGATG-GAAATT-TCAAGAC---G---A---ATTGAATACGAA----ATTT-ATTGTA-TTAGCCACGCAGTCTTAAACC--AAACTT-AAAC-----TTT-AAAA--TTCCCCGA-T--TTTT----TG------------AAAAA----T---------------AAAATCGGGGCG----GGT-GAG-----AAAATT------GGGGTGGGCGGGGAT-G--AGAATCT-AGGA-ATTGTT
gi|8 : AA-T-TCATAGATTCTCATCCAA-A--T-TTTG-G-AAAAATTG-G--G--A---GA---TGGGATGAGGATGG---G-CGAA-------TAT-------T---------T---------------ATTTTTATT--C-------AATAAAAA-TGTGTCCACTT-----CCAAAC--------AGTCTCG-------TTAAACGTTG-CTAAAAAATGA--------ACATGTTTTGGGATTAAAAAC---AAATT-T----AT---GCCGA---GT-GAATGCGGA----ACT-GATTATA-TT-GAGGCGTAATTTTAAACC--AAA----AACC-----TTA-AAAA--TTTCTGGGTT--TTTT----GGT---T--G--ATTAAAA----T-A-TAATTAA-----AAAATTGGGGGT----GGC-G-G-----AA
gi|9 : GATTCTCACCCAA-T--T-TTTTTT-TAAA-TTGTG--G----------------TT-----GG---G-TGAA-------T-T-------T---------T---------------ATTTTTTCTTTC-------ATGAAAAA-TGTG----------------------------TCACA-------TTCAACGTTG-ATAGAAAATTA--------CAATATGGCAAGATTAAAAGCG-GAAATT-TC---AT---GACAA---GTTGAATACCG-----ACCCAATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TATCCTGC-T--TTTT----GGG-G-TAAA--CT-----TTTTT-T-TT---AA-----AAAGTTGGGGTG----GGC--------------C----------------GGGAT-G--AGAATAT-AGGG-A---TGTTTTT--ATTATGACCTtgagaatctag
Alignments
lowQualScore : 11 111111 111 1111111 555555555555555555555555555555555 222222222222222 11111111 33333333333 1111 1111 77777777777777777777777777777777777777777777777777777777777777777 111111111 2222 11
lowQualScore : 4 22 3 3 3 44 3 2 3 44 111111 555 1 77777 000 6 0000000 3 222222222222222222222222222222222 555555555555555 0 3 8888888 11111111 8888888 2 2 88888888 2 999 2 333 88888888888 4444 3 0 44 2222 88888 3 777 3 1111 3 3 11111111111111111111111111111111111111111111111111111111111111111 111111111 0 77 3 3333 22
lowQualScore : . .. . . . .. . . . .. ...... ... . ..... ... . ....... . ................................. ............... . . ....... ........ ....... . . ........ . ... . ... ........... .... . . .. .... ..... . ... . .... . . ................................................................. ......... . .. . .... ..
lowQualScore : 4 22 6 6 1 22 1 2 1 22 000000 444 6 11111 000 2 0000000 1 444444444444444444444444444444444 111111111111111 8 1 9999999 66666666 1111111 5 2 11111111 4 888 2 999 66666666666 7777 1 5 66 9999 33333 3 888 3 7777 3 3 33333333333333333333333333333333333333333333333333333333333333333 333333333 2 99 3 5555 22
consensus : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAACA--------TCACGT-------TCAACGTTG-ATAGAAAATGA-CAAT--------ATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATATTT-GAGACGTAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TTTCCGGA-T----TTT-T-GGT-G-TAAA--ATAAAAA----T--T-A---AA-----AAAATCGGGGCG----GGC-G-G-----AAAATC------GG-GGCGGGCGGGGATG--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
Reference ( family-4078 ) : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAACA--------TCACGT-------TCAACGTTG-ATAGAAAATGA-CAAT--------ATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATATTT-GAGACGTAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TTTCCGGA-T----TTT-T-GGT-A-TAAA--ATAAAAA----T-AT-A---AA-----AAAATCGGGGCG----GGC-G-G-----AAAATC------GG-GGCGGGCGGGGATG--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
gi|1 : GGCCATAATAAAA-AAAA-T-CC-CAGATTCCCATACAA-G--T-TTTTTGCAAAAATTGTG--A--A---AA---AGGGGTG-----GG---G-TGGA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----A-AAACA--------TCACAT-------TCAACATTG-ATAGAAAATGA-CAAT--------ATGGCGGAATTAAAACCG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGAATATATTT-GAGACGTAGTTTTACACC--AAA----GAAC-----TGT-AAAA-----ACAAA----------T-GATAA-TGAA--ATAAAAA----T-AGAA---AA-----AAAATCGGAGCA----GGT-GTG-----AAAATC------GG-GGCGGACAGGAATG--AGAATCT-AGGATGTTTTTTTTTTTCATTATGGCCGTAA
gi|10 : tcTCCACTT-----C-AAACAATCCAGTATCATGTGCATGTTCCAACGCTG-ATAGATAATGA-CAATTGACCAATATGGCGGAATTAAAAATGAGAAATT-TT---ATAC-G---A---TGTGAAAATGGA----ACCCGAATATATTTTGAG---TAGTTTTAAACCCAAAA----GAAC-----TGT-AAAAATTTCCCGGA-TTTTTTTT-C-GGG-G-----------------------A---GG-----GGGGTGGGGGCGTGCAGGC-G-A-----GAAATC------AAAGGTGGACGGAAATGG-AGAATCT-AGGG----TTTTTTCA--ATTATGGCCTTA
gi|11 : GTGTCCACAT-----C-AACTA--------TCATTC-------TCGACGTTG-ACAGAAAATGA-CAAT--------ATGGCAG-ATTAAAAGCG-GAAATT-TT---AT---GGCAA---GTTGAATACCGA----ACCCAATTGTATTT-GAGACATACTTTTAGACC--AAA----GAAC-----TGT-AAAA---TTCTGGA-T----TTT-T---T-AGTAAA--ATTAAAA----T--T-A---AA-----CAAATCAGGGCG----GGC-ATG-----AAAATCAGCCTGAG-GGCAGGTGGGGATG--AGAACCG-AG
gi|12 : ACTC-----T-AAACA--------TCACAT-------TCAACATTG-ATAGAAACTGA-CAAT--------GTGGTGTGATTAAAAACG-CAAATT-TC---AT---G---ACGAGTTGAACACAGA----ACCCAATTATATTT-GAGACATAGTTTTAAACA--AAA----GAAC-----TGT-AAAA---TTCCAGA-T----TTT-C-GG----------GTAAACA----A-AC-A---AA-----AAAATT------------T-T-A-----AAAATA------GG-AACGGGCGAGGATA--AGAATCT-AGGA-ACTTTTTT
gi|13 : ACTT-----C-TAACA--------TCACGT-------TCAATATTG-ACCGAAAATGA-CTGT--------ATGGTGGGATTGATAACG-GAAATT-TC---AT---GTTGA---GTTGAATACCAATTAAACCCTATTATATTT-GAGACATAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TTTCTGGA-T----TTT-T-GAT---TAA-----AAAAA----T-TT-A---AATTTATACAATAGGAGCA----GGT-G-G-----AGAgatca
gi|14 : caTAATAAAT-AAT--T-CA-TAGATTCTCATCTAA-A--T-TTTTGG-AAAAATTGTG--G--G---AG---ATGGATG-----AG---G-CGAATTATATTT-T-------T---------T---------------ATTT-------C-------AATAAAAA-TGTGTCCACTTC----C-AAACA--------TCTCGT-------TAAACGTTG-CTAAAAAATGA-CAAT--------GTATTTGGATTAAAAAC---AAATT-TT---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATAttagga
gi|15 : ccAAA-AAAT-T-CT-TAGATTCTCATCCAA-A--T-TTTTGG-AAGAATTGTG--GCTG---GA---GGGGGTG-----GG---GGCAAA-------T-TCTATTTTT---------T---------------ATTT-------T-------ACGCAAAA-TGTGTCCACTT-----C-AAACA--------TCACAT-------TCAATGTTG-ACAGAAATTGA-CAAT--------ATGATGGGATTAAAAACA-GAAATT-TC---AT---GACAA---ATTGAATACGGA----AC
gi|16 : ttttAAT-T-CT-TAGATTCTCATCCAA-A--T-TTT--G-AAGAATTGTG--G--GCTGGA---GGGGGTG-----GGCCGG-CAAA-------T-T-------TCTATTTTT-T---------------ATTT-------T-------ACCAAAA--TGTGTCCACTT-----C-AAACA--------TCACAT-------TC-ATGTTGAACAGAAATTGACCAAT--------ATGATGGGATT-AAAACA-GAAATTCTA---AT---GAC-A---ATTGAATACGGA----AC
gi|17 : AAATGA-CAAT--------ATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATATTT-GAGATG
gi|18 : aaaattatgaaattgaggatgaaagtgaggatttgaatgcccactgaaatggacgagttttctctataatacatataccactgGGATG-----GG---G-CGAA-------T-TATATTTTT---------T---------------ATTT-------T-------ACGAAAAA-TGTGTCCACTT-----CCAAACA--------TCACGT-------TAAACGTTG-CTAAAAAATGA-CAAT--------GTTTTTGGATTAAAAAC---AAATT-TC---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA
gi|19 : ggttATAAAA-AAAATT-CC-TAGATTCTCATCTAA-A--A-TTTTTG-CAAAATTGTG--G--T---GGTGTGGGAGAG-----GGTGTG-TGTG-------T-G-------T---------T---------------ATTT-------T-------ACGAAAAT-TGTACCCAC
gi|2 : GGCCGTAATAAAAAAAAA-T-CC-TAGATTCTCATTCAA-ATTT-TTTTTT-TTAAATTGTT--G--G---AG---GGGGGGG-----GG---G-TATT-------T-T-------T---------T---------------ATTT-------C-------AC----AA-TGTGTgtataatatattcttttaaaaaaatgttgc
gi|2 : ttgAA----GAAC-----TGT-AAAA--TTTTGGGA-TAT--TTT-T-GGT-A-AAAATAATAAAAA----T--T-A---GA-----AAAA-------------------------AAATA------GG-GGCAGGTGGGAATG--AAAATCT-AGGA-A---TTTTTTT--ATTATGGCTTttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|20 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtTCCACTT-----T-AAACA--------TCGCAG-------TCAACGC---ACAG--------TAAT--------ATGGCGGGATT---------------TC---AG---G---ACCAGTTGAACACCGA----ATTTGATTATATTT-GAGACATAA-TTTAAACC--
gi|21 : ttcttttcttttttcatcacttgcAAATGA-CAAT--------ATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATAT
gi|22 : AAA-AAAT-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAATAT--TG--G--T---GG---GTGGTTG-----GG---
gi|23 : -----AAAATC------GA-GGTGGACGGGGATG--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGACattt
gi|3 : CCATCATAAAA-AAAT-T-CC-TAGATTCTCATTCAA-A--A-TATTTG-AAAAATTA-------G---GG---GGGAG-G-----GG---A-CGAA-------T-T-------T---------T---------------ATTT-------TTTATTTTATGAAAAA-TGTGTCCACTT-----C-AAACA--------TCCCAT-------TCAACGTTG-ATAGAAAATGA-CAAT--------ATGACAGGATTAAACATG-------------AC---A---A---GTTGGATACAGA----ACTCGATTATATTT-GAAACATATTTTTAAATC--ACAGATCGAAT-----TGT-ATAA--TTTCCAGA-T----TTT-TCGGT-A--AAA--A-AAAAA----T--T------A-----AAAATTGGGGCG----GGCGG-G-----AAAATC------AG-GGCAGGCGGAAAAG--AGAATCT-AGGA-ATTTTTTTTTTCAACCATGGCCT
gi|4 : CATAATAAAA-AATA-TTCC-TTGATTCTCATCCATTA--TATTTTTG-AAAAAT-GTT--G--A---GG---GGGGG-G-----GG---G-CGGA-------T-T-------T---------TTTTTT----------ATTT-------C-------ATGAAAAA-TGAGTCCACTTGTCTTC-AAACA--------TCACGT-------TCAATGTTG-ATAAACAATGA-CTAT--------TTGGTGGGATCAAAAA-------TT-TT---AT---G---ACGAGTTGAATATGGA----ACCTGATTATATTT-GAGATGTAGTTTTAAACC--AAA----AAAC-----TGTAAAAA--TTTCCGAT-T----TTT-T-GGT-T-AAAA--AAAAAAA----TAAT-A---AT-----AATAT-----------AAT-A-A-----AAAATA------TT-GGT--GCGAGGATT--AGAATCT-AGGA-A---TTTGTTT--ATTATGGCTTaat
gi|5 : TAATAAAA-AAAAAT-CC-TAGATTATCATCAAA-A--T-TTTTGG-GAAAATTGTG--T--G---GG---GGT--TG-----GG---G--GAA-------T-T-------TAATTTTATTT---------------ATTT-------C-------ACAAAAAAATGAGTCCCCTT-----C-AAACA--------TAACGT-------TCAACGTTG-ATGGAGAATGA-CAAT--------ATGGTGGGATTAAAAGCG-GAAATT-TC---AG---GACAA---ATTGAATACGGA----AACCGATTATATTT-TAAACAAAGCTTTAAACC--AAA----GAACTACAGTGT-AAAA--TTTCTGGA-T----TTTGG-GGG-G-CAAA--AAAAAAA---------G---AA-----GAAA------------------------AAAA--------GG-GACGGGTGGGGATG--AGAATCT-AGAA-A--TCTTTTTT--ATTATGGCCTTA
gi|6 : GGGCG----AGC-A-GCGACGAAAATC------AG-G-TGGACGGAAATGTGAGAATCTTAGTA----TTTTTTTC--ATTATGGCCCTAA
gi|7 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattGATTCTCATCCAA-A--T-TTTCTC-AAAAATTGTGACG--G---GG---TGGGGTG-----GA---GACAAA-------T-T-------T---------TGTTTCTTTATCTTTTATTT-------T-------ACGAAATA-TGTGTCCACTT-----C-AAACA--------TCACGT-------CCAACGTTG-ATAGAAAATGA-CAAT--------ATGGCGGGATTAAAGATG-GAAATT-TCAAGAC---G---A---ATTGAATACGAA----ATTT-ATTGTATTA-GCCACGCAGTCTTAAACC--AAACTT-AAAC-----TTT-AAAA--TTCCCCGA-T----TTT-T-TG------------AAAAA----T---------------AAAATCGGGGCG----GGT-GAG-----AAAATT------GG-GGTGGGCGGGGATG--AGAATCT-AGGA-ATTGTT
gi|8 : AA-T-TCATAGATTCTCATCCAA-A--T-TTTG-G-AAAAATTG-G--G--A---GA---TGGGATGAGGATGG---G-CGAA-------TAT-------T---------T---------------ATTTTTATT--C-------AATAAAAA-TGTGTCCACTT-----CCAAACAG-------TCTCGT-------TAAACGTTG-CTAAAAAATGA-ACAT--------GTTTTGGGATTAAAAAC---AAATT-T----AT---GCCGA---GT-GAATGCGGA----ACT-GATTATATT--GAGGCGTAATTTTAAACC--AAA----AACC-----TTA-AAAA--TTTCTGGGTT----TTT-T-GGT---T--G--ATTAAAA----T-AT-AATTAA-----AAAATTGGGGGT----GGC-G-G-----AA
gi|9 : GATTCTCACCCAA-T--T-TTTTTT-TAAA-TTGTG--G----------------TT-----GG---G-TGAA-------T-T-------T---------T---------------ATTTTTTCTTTC-------ATGAAAAA-TGTG---------------------------TCACAT-------TCAACGTTG-ATAGAAAATTA-CAAT--------ATGGCAAGATTAAAAGCG-GAAATT-TC---AT---GACAA---GTTGAATACCG-----ACCCAATTATATTT-GAGACATAGTTTTAAACC--AAA----GAAC-----TGT-AAAA--TATCCTGC-T----TTT-T-GGG-G-TAAA--CT-----TTTTT-TT-T---AA-----AAAGTTGGGGTG----GGC--------------C-----------------GGGATG--AGAATAT-AGGG-A---TGTTTTT--ATTATGACCTtgagaatctag
Alignments
lowQualScore : 11 111111 111 1111111 555555555555555555555555555555555 222222222222222 11111111 33333333333 1111 4444444444444444444444444444444444444444444444444444444444444444 1111111 2222 11
lowQualScore : 4 22 3 3 3 44 3 2 3 44 111111 555 1 77777 000 6 0000000 3 222222222222222222222222222222222 555555555555555 0 3 8888888 99999999 2 8888888 2 00000000 2 999 2 333 88888888888 4444 2 44 2222 88888 3 777 3 44 5555555555555555555555555555555555555555555555555555555555555555 4444444 0 3 44 3 3333 22
lowQualScore : . .. . . . .. . . . .. ...... ... . ..... ... . ....... . ................................. ............... . . ....... ........ . ....... . ........ . ... . ... ........... .... . .. .... ..... . ... . .. ................................................................ ....... . . .. . .... ..
lowQualScore : 4 22 6 6 1 22 1 2 1 22 000000 444 6 11111 000 2 0000000 1 444444444444444444444444444444444 111111111111111 8 1 9999999 11111111 5 1111111 5 33333333 4 888 2 999 66666666666 7777 5 66 9999 33333 3 888 3 66 2222222222222222222222222222222222222222222222222222222222222222 5555555 2 3 66 3 5555 22
consensus : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
Reference ( family-4078 ) : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ATAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
gi|1 : GGCCATAATAAAA-AAAA-T-CC-CAGATTCCCATACAA-G--T-TTTTTGCAAAAATTGTG--A--A---AA---AGGGGTG-----GG---G-TGGA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----A-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAAATGA--------CAATATGGCGGAATTAAAACCG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGAATATA-TTTGAGACGTAGTTTTACACC--AAA----GAACT-----GT-AAAA-----ACAAA-------T----GA-TAA--TGAA--ATAA---AAATAGAAA-AAAAATCGGAGCA----GGT-GTG-----AAAATC------GGGGCGGACAGGAAT-G--AGAATCT-AGGATGTTTTTTTTTTTCATTATGGCCGTAA
gi|10 : tcTCCACTT-----C-AAACAATCCAGTA-TCATGTGCATGTTCCAACGCTG-ATAGATAATGACAATTGACCAATATGGCGGAATTAAAAATGAGAAATT-TT---ATAC-G---A---TGTGAAAATGGA----ACCCGAATATATTTTGA---GTAGTTTTAAACCCAAAA----GAACT-----GT-AAAAATTTCCCGGA-T--TTTTTTTCGG-G-G----------------------AG-GGGGGTGGGGGCGTGCAGGC-G-A-----GAAATCA-----AAGGTGGACGGAAATGG--AGAATCT-AGGG----TTTTTTCA--ATTATGGCCTTA
gi|11 : GTGTCCACAT-----C-AACT--------A-TCATT-------CTCGACGTTG-ACAGAAAATGA--------CAATATGGCAG-ATTAAAAGCG-GAAATT-TT---AT---GGCAA---GTTGAATACCGA----ACCCAATTGTA-TTTGAGACATACTTTTAGACC--AAA----GAACT-----GT-AAAA---TTCTGGA-T--TTTT-------TAG--TAAA--ATTA---AAAT--TAA-ACAAATCAGGGCG----GGC-ATG-----AAAATCAGCCTGAGGGCAGGTGGGGAT-G--AGAACCG-AG
gi|12 : ACTC-----T-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAACTGA--------CAATGTGGTGTGATTAAAAACG-CAAATT-TC---AT---G---ACGAGTTGAACACAGA----ACCCAATTATA-TTTGAGACATAGTTTTAAACA--AAA----GAACT-----GT-AAAA---TTCCAGA-T--TTTC----GG---G--T-AA--ACAA---A-----CAA-AAAAATT------------T-T-A-----AAAATA------GGAACGGGCGAGGAT-A--AGAATCT-AGGA-ACTTTTTT
gi|13 : ACTT-----C-TAAC--------A-TCACG-------TTCAATATTG-ACCGAAAATGA--------CTGTATGGTGGGATTGATAACG-GAAATT-TC---AT---GTTGA---GTTGAATACCAATTAAACCCTATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCTGGA-T--TTTT----GA-T----TAAA--AAAATTTAAAT--TTA-TACAATAGGAGCA----GGT-G-G-----AGAgatca
gi|14 : caTAATAAAT-AAT--T-CA-TAGATTCTCATCTAA-A--T-TTTTGG-AAAAATTGTG--G--G---AG---ATGGATG-----AG---G-CGAATTATATTT-T-------T---------T---------------ATTT-------C-------AATAAAAA-TGTGTCCACTTC----C-AAAC--------A-TCTCG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTATTTGGATTAAAAAC---AAATT-TT---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA-ttagga
gi|15 : ccAAA-AAAT-T-CT-TAGATTCTCATCCAA-A--T-TTTTGG-AAGAATTGTG--GCTG---GA---GGGGGTG-----GG---GGCAAA-------T-TCTATTTTT---------T---------------ATTT-------T-------ACGCAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTCAATGTTG-ACAGAAATTGA--------CAATATGATGGGATTAAAAACA-GAAATT-TC---AT---GACAA---ATTGAATACGGA----AC
gi|16 : ttttAAT-T-CT-TAGATTCTCATCCAA-A--T-TTT--G-AAGAATTGTG--G--GCTGGA---GGGGGTG-----GGCCGG-CAAA-------T-T-------TCTATTTTT-T---------------ATTT-------T-------ACCAAAA--TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTC-ATGTTGAACAGAAATTGAC-------CAATATGATGGGATT-AAAACA-GAAATTCTA---AT---GAC-A---ATTGAATACGGA----AC
gi|17 : AAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATA-TTTGAGATG
gi|18 : aaaattatgaaattgaggatgaaagtgaggatttgaatgcccactgaaatggacgagttttctctataatacatataccactgGGATG-----GG---G-CGAA-------T-TATATTTTT---------T---------------ATTT-------T-------ACGAAAAA-TGTGTCCACTT-----CCAAAC--------A-TCACG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTTTTTGGATTAAAAAC---AAATT-TC---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA-
gi|19 : ggttATAAAA-AAAATT-CC-TAGATTCTCATCTAA-A--A-TTTTTG-CAAAATTGTG--G--T---GGTGTGGGAGAG-----GGTGTG-TGTG-------T-G-------T---------T---------------ATTT-------T-------ACGAAAAT-TGTACCCAC
gi|2 : GGCCGTAATAAAAAAAAA-T-CC-TAGATTCTCATTCAA-ATTT-TTTTTT-TTAAATTGTT--G--G---AG---GGGGGGG-----GG---G-TATT-------T-T-------T---------T---------------ATTT-------C-------AC----AA-TGTGTgtataatatattcttttaaaaaaatgttgc
gi|2 : ttgAA----GAACT-----GT-AAAA--TTTTGGGA-TATTTTT----GG-T-A--AAAATAATAA---AAAT--TAG-AAAAA-------------------------AAATA------GGGGCAGGTGGGAAT-G--AAAATCT-AGGA-A---TTTTTTT--ATTATGGCTTttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|20 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtTCCACTT-----T-AAAC--------A-TCGCA-------GTCAACGC---ACAG---------------TAATATGGCGGGATT---------------TC---AG---G---ACCAGTTGAACACCGA----ATTTGATTATA-TTTGAGACATAA-TTTAAACC--
gi|21 : ttcttttcttttttcatcacttgcAAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATA-T
gi|22 : AAA-AAAT-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAATAT--TG--G--T---GG---GTGGTTG-----GG---
gi|23 : -----AAAATC------GAGGTGGACGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGACattt
gi|3 : CCATCATAAAA-AAAT-T-CC-TAGATTCTCATTCAA-A--A-TATTTG-AAAAATTA-------G---GG---GGGAG-G-----GG---A-CGAA-------T-T-------T---------T---------------ATTT-------TTTATTTTATGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCCCA-------TTCAACGTTG-ATAGAAAATGA--------CAATATGACAGGATTAAACATG-------------AC---A---A---GTTGGATACAGA----ACTCGATTATA-TTTGAAACATATTTTTAAATC--ACAGATCGAATT-----GT-ATAA--TTTCCAGA-T--TTTT----CG---G--TAAA--AAAA---AAAT--T---AAAAATTGGGGCG----GGCGG-G-----AAAATC------AGGGCAGGCGGAAAA-G--AGAATCT-AGGA-ATTTTTTTTTTCAACCATGGCCT
gi|4 : CATAATAAAA-AATA-TTCC-TTGATTCTCATCCATTA--TATTTTTG-AAAAAT-GTT--G--A---GG---GGGGG-G-----GG---G-CGGA-------T-T-------T---------TTTTTT----------ATTT-------C-------ATGAAAAA-TGAGTCCACTTGTCTTC-AAAC--------A-TCACG-------TTCAATGTTG-ATAAACAATGA--------CTATTTGGTGGGATCAAAAA-------TT-TT---AT---G---ACGAGTTGAATATGGA----ACCTGATTATA-TTTGAGATGTAGTTTTAAACC--AAA----AAACT-----GTAAAAA--TTTCCGAT-T--TTTT----GG-T----TAAA--AAAA---AAAA--TAATAATAAT-----AT----AAT-A-A-----AAAATA------TTGGT--GCGAGGAT-T--AGAATCT-AGGA-A---TTTGTTT--ATTATGGCTTaat
gi|5 : TAATAAAA-AAAAAT-CC-TAGATTATCATCAAA-A--T-TTTTGG-GAAAATTGTG--T--G---GG---GGT--TG-----GG---G--GAA-------T-T-------TAATTTTATTT---------------ATTT-------C-------ACAAAAAAATGAGTCCCCTT-----C-AAAC--------A-TAACG-------TTCAACGTTG-ATGGAGAATGA--------CAATATGGTGGGATTAAAAGCG-GAAATT-TC---AG---G---ACAAATTGAATACGGA----AACCGATTATA-TTTTAAACAAAGCTTTAAACC--AAA----GAACTACAGTGT-AAAA--TTTCTGGA-T--TTTG----GG-G-GG-CAAA--AAAA---AAA----GA-AGAAA------------------------AAAA--------GGGACGGGTGGGGAT-G--AGAATCT-AGAA-A--TCTTTTTT--ATTATGGCCTTA
gi|6 : GGGCG----AGC-A-GCGACGAAAATC------AGG-TGGACGGAAAT-GTGAGAATCTTAGTA----TTTTTTTC--ATTATGGCCCTAA
gi|7 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattGATTCTCATCCAA-A--T-TTTCTC-AAAAATTGTGACG--G---GG---TGGGGTG-----GA---GACAAA-------T-T-------T---------TGTTTCTTTATCTTTTATTT-------T-------ACGAAATA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TCCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAGATG-GAAATT-TCAAGAC---G---A---ATTGAATACGAA----ATTT-ATTGTA-TTAGCCACGCAGTCTTAAACC--AAACTT-AAACT-----TT-AAAA--TTCCCCGA-T--TTTT-------T-G----------AA---AAAT-------AAAATCGGGGCG----GGT-GAG-----AAAATT------GGGGTGGGCGGGGAT-G--AGAATCT-AGGA-ATTGTT
gi|8 : AA-T-TCATAGATTCTCATCCAA-A--T-TTTG-G-AAAAATTG-G--G--A---GA---TGGGATGAGGATGG---G-CGAA-------TAT-------T---------T---------------ATTTTTATT--C-------AATAAAAA-TGTGTCCACTT-----CCAAAC--------AGTCTCG-------TTAAACGTTG-CTAAAAAATGA--------ACATGTTTTGGGATTAAAAAC---AAATT-T----AT---GCCGA---GT-GAATGCGGA----ACT-GATTATA-TT-GAGGCGTAATTTTAAACC--AAA----AACCT-----TA-AAAA--TTTCTGGGTT--TTTT----GGTT-GATTAAA--AT-A---TAAT--T-A-AAAAATTGGGGGT----GGC-G-G-----AA
gi|9 : GATTCTCACCCAA-T--T-TTTTTT-TAAA-TTGTG--G----------------TT-----GG---G-TGAA-------T-T-------T---------T---------------ATTTTTTCTTTC-------ATGAAAAA-TGTG----------------------------TCACA-------TTCAACGTTG-ATAGAAAATTA--------CAATATGGCAAGATTAAAAGCG-GAAATT-TC---AT---GACAA---GTTGAATACCG-----ACCCAATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TATCCTGC-T--TTTT----GG-G-G--TAAA--CTTT---TTTT--TTA-AAAAGTTGGGGTG----GGC--------------C----------------GGGAT-G--AGAATAT-AGGG-A---TGTTTTT--ATTATGACCTtgagaatctag
Alignments
lowQualScore : 11 111111 111 1111111 555555555555555555555555555555555 222222222222222 11111111 33333333333 1111 4444444444444444444444444444444444444444444444444444444444444444 1111111 2222 11
lowQualScore : 4 22 3 3 3 44 3 2 3 44 111111 555 1 77777 000 6 0000000 3 222222222222222222222222222222222 555555555555555 0 3 8888888 99999999 2 8888888 2 00000000 2 999 2 333 88888888888 4444 2 44 2222 88888 3 777 3 44 3333333333333333333333333333333333333333333333333333333333333333 4444444 0 3 44 3 3333 22
lowQualScore : . .. . . . .. . . . .. ...... ... . ..... ... . ....... . ................................. ............... . . ....... ........ . ....... . ........ . ... . ... ........... .... . .. .... ..... . ... . .. ................................................................ ....... . . .. . .... ..
lowQualScore : 4 22 6 6 1 22 1 2 1 22 000000 444 6 11111 000 2 0000000 1 444444444444444444444444444444444 111111111111111 8 1 9999999 11111111 5 1111111 5 33333333 4 888 2 999 66666666666 7777 5 66 9999 33333 3 888 3 66 6666666666666666666666666666666666666666666666666666666666666666 5555555 2 3 66 3 5555 22
consensus : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
Reference ( family-4078 ) : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
gi|1 : GGCCATAATAAAA-AAAA-T-CC-CAGATTCCCATACAA-G--T-TTTTTGCAAAAATTGTG--A--A---AA---AGGGGTG-----GG---G-TGGA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----A-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAAATGA--------CAATATGGCGGAATTAAAACCG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGAATATA-TTTGAGACGTAGTTTTACACC--AAA----GAACT-----GT-AAAA-----ACAAA-------T----GA-TAA--TGAA--ATAA---AAATAGAAA-AAAAATCGGAGCA----GGT-GTG-----AAAATC------GGGGCGGACAGGAAT-G--AGAATCT-AGGATGTTTTTTTTTTTCATTATGGCCGTAA
gi|10 : tcTCCACTT-----C-AAACAATCCAGTA-TCATGTGCATGTTCCAACGCTG-ATAGATAATGACAATTGACCAATATGGCGGAATTAAAAATGAGAAATT-TT---ATAC-G---A---TGTGAAAATGGA----ACCCGAATATATTTTGA---GTAGTTTTAAACCCAAAA----GAACT-----GT-AAAAATTTCCCGGA-T--TTTTTTTCGG-G-G----------------------AG-GGGGGTGGGGGCGTGCAGGC-G-A-----GAAATCA-----AAGGTGGACGGAAATGG--AGAATCT-AGGG----TTTTTTCA--ATTATGGCCTTA
gi|11 : GTGTCCACAT-----C-AACT--------A-TCATT-------CTCGACGTTG-ACAGAAAATGA--------CAATATGGCAG-ATTAAAAGCG-GAAATT-TT---AT---GGCAA---GTTGAATACCGA----ACCCAATTGTA-TTTGAGACATACTTTTAGACC--AAA----GAACT-----GT-AAAA---TTCTGGA-T--TTTT-------TAG--TAAA--ATTA---AAAT--TAA-ACAAATCAGGGCG----GGC-ATG-----AAAATCAGCCTGAGGGCAGGTGGGGAT-G--AGAACCG-AG
gi|12 : ACTC-----T-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAACTGA--------CAATGTGGTGTGATTAAAAACG-CAAATT-TC---AT---G---ACGAGTTGAACACAGA----ACCCAATTATA-TTTGAGACATAGTTTTAAACA--AAA----GAACT-----GT-AAAA---TTCCAGA-T--TTTC----GG---G--T-AA--ACAA---A-----CAA-AAAAATT------------T-T-A-----AAAATA------GGAACGGGCGAGGAT-A--AGAATCT-AGGA-ACTTTTTT
gi|13 : ACTT-----C-TAAC--------A-TCACG-------TTCAATATTG-ACCGAAAATGA--------CTGTATGGTGGGATTGATAACG-GAAATT-TC---AT---GTTGA---GTTGAATACCAATTAAACCCTATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCTGGA-T--TTTT----GA-T----TAAA--AAAATTTAAAT--TTA-TACAATAGGAGCA----GGT-G-G-----AGAgatca
gi|14 : caTAATAAAT-AAT--T-CA-TAGATTCTCATCTAA-A--T-TTTTGG-AAAAATTGTG--G--G---AG---ATGGATG-----AG---G-CGAATTATATTT-T-------T---------T---------------ATTT-------C-------AATAAAAA-TGTGTCCACTTC----C-AAAC--------A-TCTCG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTATTTGGATTAAAAAC---AAATT-TT---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA-ttagga
gi|15 : ccAAA-AAAT-T-CT-TAGATTCTCATCCAA-A--T-TTTTGG-AAGAATTGTG--GCTG---GA---GGGGGTG-----GG---GGCAAA-------T-TCTATTTTT---------T---------------ATTT-------T-------ACGCAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTCAATGTTG-ACAGAAATTGA--------CAATATGATGGGATTAAAAACA-GAAATT-TC---AT---GACAA---ATTGAATACGGA----AC
gi|16 : ttttAAT-T-CT-TAGATTCTCATCCAA-A--T-TTT--G-AAGAATTGTG--G--GCTGGA---GGGGGTG-----GGCCGG-CAAA-------T-T-------TCTATTTTT-T---------------ATTT-------T-------ACCAAAA--TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTC-ATGTTGAACAGAAATTGAC-------CAATATGATGGGATT-AAAACA-GAAATTCTA---AT---GAC-A---ATTGAATACGGA----AC
gi|17 : AAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATA-TTTGAGATG
gi|18 : aaaattatgaaattgaggatgaaagtgaggatttgaatgcccactgaaatggacgagttttctctataatacatataccactgGGATG-----GG---G-CGAA-------T-TATATTTTT---------T---------------ATTT-------T-------ACGAAAAA-TGTGTCCACTT-----CCAAAC--------A-TCACG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTTTTTGGATTAAAAAC---AAATT-TC---ATGCCG---A---GTTGAATGCGGA----ACCTGATTATA-
gi|19 : ggttATAAAA-AAAATT-CC-TAGATTCTCATCTAA-A--A-TTTTTG-CAAAATTGTG--G--T---GGTGTGGGAGAG-----GGTGTG-TGTG-------T-G-------T---------T---------------ATTT-------T-------ACGAAAAT-TGTACCCAC
gi|2 : GGCCGTAATAAAAAAAAA-T-CC-TAGATTCTCATTCAA-ATTT-TTTTTT-TTAAATTGTT--G--G---AG---GGGGGGG-----GG---G-TATT-------T-T-------T---------T---------------ATTT-------C-------AC----AA-TGTGTgtataatatattcttttaaaaaaatgttgc
gi|2 : ttgAA----GAACT-----GT-AAAA--TTTTGGGA-TATTTTT----GG-T-A--AAAATAATAA---AAAT--TAG-AAAAA-------------------------AAATA------GGGGCAGGTGGGAAT-G--AAAATCT-AGGA-A---TTTTTTT--ATTATGGCTTttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|20 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtTCCACTT-----T-AAAC--------A-TCGCA-------GTCAACGC---ACAG---------------TAATATGGCGGGATT---------------TC---AG---G---ACCAGTTGAACACCGA----ATTTGATTATA-TTTGAGACATAA-TTTAAACC--
gi|21 : ttcttttcttttttcatcacttgcAAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TC---AT---G---ACGAATTGAATATGGA----ACTCGATTATA-T
gi|22 : AAA-AAAT-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAATAT--TG--G--T---GG---GTGGTTG-----GG---
gi|23 : -----AAAATC------GAGGTGGACGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGACattt
gi|3 : CCATCATAAAA-AAAT-T-CC-TAGATTCTCATTCAA-A--A-TATTTG-AAAAATTA-------G---GG---GGGAG-G-----GG---A-CGAA-------T-T-------T---------T---------------ATTT-------TTTATTTTATGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCCCA-------TTCAACGTTG-ATAGAAAATGA--------CAATATGACAGGATTAAACATG-------------AC---A---A---GTTGGATACAGA----ACTCGATTATA-TTTGAAACATATTTTTAAATC--ACAGATCGAATT-----GT-ATAA--TTTCCAGA-T--TTTT----CG---G--TAAA--AAAA---AAAT--T---AAAAATTGGGGCG----GGCGG-G-----AAAATC------AGGGCAGGCGGAAAA-G--AGAATCT-AGGA-ATTTTTTTTTTCAACCATGGCCT
gi|4 : CATAATAAAA-AATA-TTCC-TTGATTCTCATCCATTA--TATTTTTG-AAAAAT-GTT--G--A---GG---GGGGG-G-----GG---G-CGGA-------T-T-------T---------TTTTTT----------ATTT-------C-------ATGAAAAA-TGAGTCCACTTGTCTTC-AAAC--------A-TCACG-------TTCAATGTTG-ATAAACAATGA--------CTATTTGGTGGGATCAAAAA-------TT-TT---AT---G---ACGAGTTGAATATGGA----ACCTGATTATA-TTTGAGATGTAGTTTTAAACC--AAA----AAACT-----GTAAAAA--TTTCCGAT-T--TTTT----GG-T----TAAA--AAAA---AAAA--TAATAATAAT-----AT----AAT-A-A-----AAAATA------TTGGT--GCGAGGAT-T--AGAATCT-AGGA-A---TTTGTTT--ATTATGGCTTaat
gi|5 : TAATAAAA-AAAAAT-CC-TAGATTATCATCAAA-A--T-TTTTGG-GAAAATTGTG--T--G---GG---GGT--TG-----GG---G--GAA-------T-T-------TAATTTTATTT---------------ATTT-------C-------ACAAAAAAATGAGTCCCCTT-----C-AAAC--------A-TAACG-------TTCAACGTTG-ATGGAGAATGA--------CAATATGGTGGGATTAAAAGCG-GAAATT-TC---AG---G---ACAAATTGAATACGGA----AACCGATTATA-TTTTAAACAAAGCTTTAAACC--AAA----GAACTACAGTGT-AAAA--TTTCTGGA-T--TTTG----GG-G-GG-CAAA--AAAA---AAA----GA-AGAAA------------------------AAAA--------GGGACGGGTGGGGAT-G--AGAATCT-AGAA-A--TCTTTTTT--ATTATGGCCTTA
gi|6 : GGGCG----AGC-A-GCGACGAAAATC------AGG-TGGACGGAAAT-GTGAGAATCTTAGTA----TTTTTTTC--ATTATGGCCCTAA
gi|7 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattGATTCTCATCCAA-A--T-TTTCTC-AAAAATTGTGACG--G---GG---TGGGGTG-----GA---GACAAA-------T-T-------T---------TGTTTCTTTATCTTTTATTT-------T-------ACGAAATA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TCCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAGATG-GAAATT-TCAAGAC---G---A---ATTGAATACGAA----ATTT-ATTGTA-TTAGCCACGCAGTCTTAAACC--AAACTT-AAACT-----TT-AAAA--TTCCCCGA-T--TTTT-------T-G----------AA---AAAT-------AAAATCGGGGCG----GGT-GAG-----AAAATT------GGGGTGGGCGGGGAT-G--AGAATCT-AGGA-ATTGTT
gi|8 : AA-T-TCATAGATTCTCATCCAA-A--T-TTTG-G-AAAAATTG-G--G--A---GA---TGGGATGAGGATGG---G-CGAA-------TAT-------T---------T---------------ATTTTTATT--C-------AATAAAAA-TGTGTCCACTT-----CCAAAC--------AGTCTCG-------TTAAACGTTG-CTAAAAAATGA--------ACATGTTTTGGGATTAAAAAC---AAATT-T----AT---GCCGA---GT-GAATGCGGA----ACT-GATTATA-TT-GAGGCGTAATTTTAAACC--AAA----AACCT-----TA-AAAA--TTTCTGGGTT--TTTT----GGTT-GATTAAA--AT-A---TAAT--T-A-AAAAATTGGGGGT----GGC-G-G-----AA
gi|9 : GATTCTCACCCAA-T--T-TTTTTT-TAAA-TTGTG--G----------------TT-----GG---G-TGAA-------T-T-------T---------T---------------ATTTTTTCTTTC-------ATGAAAAA-TGTG----------------------------TCACA-------TTCAACGTTG-ATAGAAAATTA--------CAATATGGCAAGATTAAAAGCG-GAAATT-TC---AT---GACAA---GTTGAATACCG-----ACCCAATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TATCCTGC-T--TTTT----GG-G-G--TAAA--CTTT---TTTT--TTA-AAAAGTTGGGGTG----GGC--------------C----------------GGGAT-G--AGAATAT-AGGG-A---TGTTTTT--ATTATGACCTtgagaatctag
blockSeqs : A AT T A T TT A G . AC GCTG TGT T AGGAT CCG G TTATATT A TTGTTTCTTTATCTTTT TTTATTTT A GTCTTC AATCCAGT G TGCATGT A CAATTGAC G GAG C AAG GGCAA TTAA T CA GATC ACAGT A ATT T AT GATTAAAAAAATTTAAATTTATACAATAGGAGCAGGTGG AGCCTGA G TG T ACT CA
blockSeqs : . AA . . . . . G . . CTG . T . TGT A . . TAATTTTATTT TTTCTTTC . CC . . . . C G GG . . GACGA . . . CTT . . T . . GGTTGATTAAAATATAATTAAAAAATTGGGGGTGGCGG AA . . . ATT .
blockSeqs : . T . . . . . T . . G . T . . . . . TCTATTTTTT TTATTC . CC . . . . . G GC . . GTTGA . . . . . . T . . TAGTAAAATTAAAATTAAACAAATCAGGGCGGGCATG G . . . ATT .
blockSeqs : . T . . . . . T . . T . T . . . . . CTATTTTTT C . CC . . . . . G GG . . GCCGA . . . . . . T . . CGGTAAAAAAAAAATTAAAAATTGGGGCGGGCGGG G . . . ATT .
blockSeqs : . A . . . . . T . . G . A . . . . . ATATTTTTT T . C . . . . . T AG . . GACAA . . . . . . T . . GGGGTAAACTTTTTTTTTAAAAAGTTGGGGTGGGC G . . . A .
blockSeqs : . T . . . . . T . . T . G . . . . . TTTTTTT T . C . . . . . A AG . . GACGA . . . . . . T . . TTTCGGGGAGGGGGGTGGGGGCGTGCAGGCGA A . . . A .
blockSeqs : . T . . . . . T . . G . T . . . . . TT T . T . . . . . A AA . . GCCGA . . . . . . T . . GGTTAAAAAAAAAAATAATAATAATATAATAA T . . . A .
blockSeqs : . A . . . . . G . . A . T . . . . . TT T . C . . . . . T AA . . GACCA . . . . . . T . . GGTAAAAATAATAAAAATTAGAAAAA G . . . A .
blockSeqs : A . . . . . T . . G . T . . . . . TT C . C . . . . . G GG . . GACGA . . . . . . T . . TGAAAAATAAAATCGGGGCGGGTGAG A . . . .
blockSeqs : . . . . . . T . . G . T . . . . . TT C . C . . . . . A GG . . GACGA . . . . . . . . . GGGTAAACAAACAAAAAAATTTTA G . . . .
blockSeqs : . . . . . . A . T . . . . . TT C . T . . . . . G GG . . GACAA . . . . . . . . . GGGGGCAAAAAAAAAAGAAGAAA . . . .
blockSeqs : . . . . . . . . . . . . . . TT T . C . . . . . G G . . GCCGA . .
blockSeqs : . . . C . . . . . G . . . GACAA . .
blockSeqs : C . . . . . T . . . ACGA . .
blockSeqs : . . . . . . G . . . GACA . .
blockSeqs : . . . . . AA .
blockSeqs : . . . . . GA .
blockSeqCons : GACGA****** T** A*** **
originalCons : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---AT---G---A---GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGA-ATTTTTTTTTT--ATTATGGCCTTAA
finalCons : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TC---ATGACGA------GTTGAATACGGA----ACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAAT--TTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCT-AGGAA---TTTTTTTT--ATTATGGCCTTAA
Alignments
lowQualScore : 11 111111 111 1111111 555555555555555555555555555555555 222222222222222 11111111 1111 4444444444444444444444444444444444444444444444444444444444444444 1111111 111 1111
lowQualScore : 4 22 3 3 3 44 3 2 3 44 111111 555 1 77777 000 6 0000000 3 222222222222222222222222222222222 555555555555555 0 3 8888888 99999999 2 8888888 2 00000000 2 999 2 4444 2 44 2222 88888 3 777 3 44 3333333333333333333333333333333333333333333333333333333333333333 4444444 0 3 44 3 000 7777
lowQualScore : . .. . . . .. . . . .. ...... ... . ..... ... . ....... . ................................. ............... . . ....... ........ . ....... . ........ . ... . .... . .. .... ..... . ... . .. ................................................................ ....... . . .. . ... ....
lowQualScore : 4 22 6 6 1 22 1 2 1 22 000000 444 6 11111 000 2 0000000 1 444444444444444444444444444444444 111111111111111 8 1 9999999 11111111 5 1111111 5 33333333 4 888 2 7777 5 66 9999 33333 3 888 3 66 6666666666666666666666666666666666666666666666666666666666666666 5555555 2 3 66 6 777 0000
consensus : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TCATGACGAGTTGAATAC----GGAACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCTAGGA-A--TTTTTTTT----ATTATGGCCTTAA
Reference ( family-4078 ) : NNGGCCATAATAAAA-AAAA-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAAAATTGTG--G--G---GG---GGGGGTG-----GG---G-CGAA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TTCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAAACG-GAAATT-TCATGACGAGTTGAATAC----GGAACCCGATTATA-TTTGAGACGTAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCCGGA-T--TTTT----GG-T-G--TAAA--ANAA---AAAT--TAA-AAAAATCGGGGCG----GGC-G-G-----AAAATC------GGGGCGGGCGGGGAT-G--AGAATCTAGGA-A--TTTTTTTT----ATTATGGCCTTAA
gi|1 : GGCCATAATAAAA-AAAA-T-CC-CAGATTCCCATACAA-G--T-TTTTTGCAAAAATTGTG--A--A---AA---AGGGGTG-----GG---G-TGGA-------T-T-------T---------T---------------ATTT-------C-------ACGAAAAA-TGTGTCCACTT-----A-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAAATGA--------CAATATGGCGGAATTAAAACCG-GAAATT-TCAT---GAGTTGAATAC----GGAACCCGAATATA-TTTGAGACGTAGTTTTACACC--AAA----GAACT-----GT-AAAA-----ACAAA-------T----GA-TAA--TGAA--ATAA---AAATAGAAA-AAAAATCGGAGCA----GGT-GTG-----AAAATC------GGGGCGGACAGGAAT-G--AGAATCTAGGATG--TTTTTTTTTTTCATTATGGCCGTAA
gi|10 : tcTCCACTT-----C-AAACAATCCAGTA-TCATGTGCATGTTCCAACGCTG-ATAGATAATGACAATTGACCAATATGGCGGAATTAAAAATGAGAAATT-TTAT-ACGATGTGAAAAT----GGAACCCGAATATATTTTGA---GTAGTTTTAAACCCAAAA----GAACT-----GT-AAAAATTTCCCGGA-T--TTTTTTTCGG-G-G----------------------AG-GGGGGTGGGGGCGTGCAGGC-G-A-----GAAATCA-----AAGGTGGACGGAAATGG--AGAATCTAGG--G--TTTTTTCA----ATTATGGCCTTA
gi|11 : GTGTCCACAT-----C-AACT--------A-TCATT-------CTCGACGTTG-ACAGAAAATGA--------CAATATGGCAG-ATTAAAAGCG-GAAATT-TTATGGCAAGTTGAATAC----CGAACCCAATTGTA-TTTGAGACATACTTTTAGACC--AAA----GAACT-----GT-AAAA---TTCTGGA-T--TTTT-------TAG--TAAA--ATTA---AAAT--TAA-ACAAATCAGGGCG----GGC-ATG-----AAAATCAGCCTGAGGGCAGGTGGGGAT-G--AGAACCGAG
gi|12 : ACTC-----T-AAAC--------A-TCACA-------TTCAACATTG-ATAGAAACTGA--------CAATGTGGTGTGATTAAAAACG-CAAATT-TCATGACGAGTTGAACAC----AGAACCCAATTATA-TTTGAGACATAGTTTTAAACA--AAA----GAACT-----GT-AAAA---TTCCAGA-T--TTTC----GG---G--T-AA--ACAA---A-----CAA-AAAAATT------------T-T-A-----AAAATA------GGAACGGGCGAGGAT-A--AGAATCTAGGA-A--CTTTTTTG----ATCA
gi|13 : ACTT-----C-TAAC--------A-TCACG-------TTCAATATTG-ACCGAAAATGA--------CTGTATGGTGGGATTGATAACG-GAAATT-TCATGTTGAGTTGAATACCAATTAAACCCTATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TTTCTGGA-T--TTTT----GA-T----TAAA--AAAATTTAAAT--TTA-TACAATAGGAGCA----GGT-G-G-----AGA
gi|14 : caTAATAAAT-AAT--T-CA-TAGATTCTCATCTAA-A--T-TTTTGG-AAAAATTGTG--G--G---AG---ATGGATG-----AG---G-CGAATTATATTT-T-------T---------T---------------ATTT-------C-------AATAAAAA-TGTGTCCACTTC----C-AAAC--------A-TCTCG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTATTTGGATTAAAAAC---AAATT-TTATGCCGAGTTGAATGC----GGAACCTGATTATA-ttagga
gi|15 : ccAAA-AAAT-T-CT-TAGATTCTCATCCAA-A--T-TTTTGG-AAGAATTGTG--GCTG---GA---GGGGGTG-----GG---GGCAAA-------T-TCTATTTTT---------T---------------ATTT-------T-------ACGCAAAA-TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTCAATGTTG-ACAGAAATTGA--------CAATATGATGGGATTAAAAACA-GAAATT-TCATGACAAATTGAATAC----GGAAC
gi|16 : ttttAAT-T-CT-TAGATTCTCATCCAA-A--T-TTT--G-AAGAATTGTG--G--GCTGGA---GGGGGTG-----GGCCGG-CAAA-------T-T-------TCTATTTTT-T---------------ATTT-------T-------ACCAAAA--TGTGTCCACTT-----C-AAAC--------A-TCACA-------TTC-ATGTTGAACAGAAATTGAC-------CAATATGATGGGATT-AAAACA-GAAATTCTAATGAC-AATTGAATAC----GGAAC
gi|17 : AAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TCATGACGAATTGAATAT----GGAACTCGATTATA-TTTGAGATG
gi|18 : aaaattatgaaattgaggatgaaagtgaggatttgaatgcccactgaaatggacgagttttctctataatacatataccactgGGATG-----GG---G-CGAA-------T-TATATTTTT---------T---------------ATTT-------T-------ACGAAAAA-TGTGTCCACTT-----CCAAAC--------A-TCACG-------TTAAACGTTG-CTAAAAAATGA--------CAATGTTTTTGGATTAAAAAC---AAATT-TCATGCCGAGTTGAATGC----GGAACCTGATTATA-
gi|19 : ggttATAAAA-AAAATT-CC-TAGATTCTCATCTAA-A--A-TTTTTG-CAAAATTGTG--G--T---GGTGTGGGAGAG-----GGTGTG-TGTG-------T-G-------T---------T---------------ATTT-------T-------ACGAAAAT-TGTACCCAC
gi|2 : GGCCGTAATAAAAAAAAA-T-CC-TAGATTCTCATTCAA-ATTT-TTTTTT-TTAAATTGTT--G--G---AG---GGGGGGG-----GG---G-TATT-------T-T-------T---------T---------------ATTT-------C-------AC----AA-TGTGTgtataatatattcttttaaaaaaatgttgc
gi|2 : ttgAA----GAACT-----GT-AAAA--TTTTGGGA-TATTTTT----GG-T-A--AAAATAATAA---AAAT--TAG-AAAAA-------------------------AAATA------GGGGCAGGTGGGAAT-G--AAAATCTAGGA-A---TTTTTTT----ATTATGGCTTttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtaagaactgtaaaattttgggatatttttggtaaaaataataaaaattagaaaaaaaataggggcaggtgggaatgaaaatctaggaatttttttattatggctt
gi|20 : ttgggccgtaataaaaaaaaatcctagattctcattcaaatttttttttttaaattgttggagggggggggggtattttttatttcacaatgtgtttaatattgtgactgtcatcagaaaggaacaagttatcaattttcccagaataaaagtaaagtctttgtacagttctaatgggttgtatgtatctttaactatacatccatatcagtccttaatgactcagtTCCACTT-----T-AAAC--------A-TCGCA-------GTCAACGC---ACAG---------------TAATATGGCGGGATT---------------TCAGGACCAGTTGAACAC----CGAATTTGATTATA-TTTGAGACATAA-TTTAAACC--
gi|21 : ttcttttcttttttcatcacttgcAAATGA--------CAATATA-CGGAACTAAAAACA-AAAATT-TCATGACGAATTGAATAT----GGAACTCGATTATA-T
gi|22 : AAA-AAAT-T-CC-TAGATTCTCATCCAA-A--T-TTTTTG-AAATAT--TG--G--T---GG---GTGGTTG-----GG---
gi|23 : -----AAAATC------GAGGTGGACGGGGAT-G--AGAATCTAGGA-ATTTTTTTTTT----ATTATGACattt
gi|3 : CCATCATAAAA-AAAT-T-CC-TAGATTCTCATTCAA-A--A-TATTTG-AAAAATTA-------G---GG---GGGAG-G-----GG---A-CGAA-------T-T-------T---------T---------------ATTT-------TTTATTTTATGAAAAA-TGTGTCCACTT-----C-AAAC--------A-TCCCA-------TTCAACGTTG-ATAGAAAATGA--------CAATATGACAGGATTAAA-------------CATGACAAGTTGGATAC----AGAACTCGATTATA-TTTGAAACATATTTTTAAATC--ACAGATCGAATT-----GT-ATAA--TTTCCAGA-T--TTTT----CG---G--TAAA--AAAA---AAAT--T---AAAAATTGGGGCG----GGCGG-G-----AAAATC------AGGGCAGGCGGAAAA-G--AGAATCTAGGA-A--TTTTTTTTTTCAACCATGGCCT
gi|4 : CATAATAAAA-AATA-TTCC-TTGATTCTCATCCATTA--TATTTTTG-AAAAAT-GTT--G--A---GG---GGGGG-G-----GG---G-CGGA-------T-T-------T---------TTTTTT----------ATTT-------C-------ATGAAAAA-TGAGTCCACTTGTCTTC-AAAC--------A-TCACG-------TTCAATGTTG-ATAAACAATGA--------CTATTTGGTGGGATCAAAAA-------TT-TTATGACGAGTTGAATAT----GGAACCTGATTATA-TTTGAGATGTAGTTTTAAACC--AAA----AAACT-----GTAAAAA--TTTCCGAT-T--TTTT----GG-T----TAAA--AAAA---AAAA--TAATAATAAT-----AT----AAT-A-A-----AAAATA------TTGGT--GCGAGGAT-T--AGAATCTAGGA-A---TTTGTTT----ATTATGGCTTaat
gi|5 : TAATAAAA-AAAAAT-CC-TAGATTATCATCAAA-A--T-TTTTGG-GAAAATTGTG--T--G---GG---GGT--TG-----GG---G--GAA-------T-T-------TAATTTTATTT---------------ATTT-------C-------ACAAAAAAATGAGTCCCCTT-----C-AAAC--------A-TAACG-------TTCAACGTTG-ATGGAGAATGA--------CAATATGGTGGGATTAAAAGCG-GAAATT-TCAGGACAAATTGAATAC----GGAAACCGATTATA-TTTTAAACAAAGCTTTAAACC--AAA----GAACTACAGTGT-AAAA--TTTCTGGA-T--TTTG----GG-G-GG-CAAA--AAAA---AAA----GA-AGAAA------------------------AAAA--------GGGACGGGTGGGGAT-G--AGAATCTAGAA-A--TCTTTTTT----ATTATGGCCTTA
gi|6 : GGGCG----AGC-A-GCGACGAAAATC------AGG-TGGACGGAAAT-GTGAGAATCTTAGT-A--TTTTTTTC----ATTATGGCCCTAA
gi|7 : gtattgatgttagcattgtcatacggctgcgacagataatgcgaatttgcagctattcgacggataattaaaaatagcgtattttttataatctgaggttgaaatgatgaactccaattatatttgatatagtgcacagtgtttaaccaagaacgtgttaggataatattccgggtgattttattttcttctttcaagttcggccttagggtgccgggggggtggcaggagcatgaggagggcattGATTCTCATCCAA-A--T-TTTCTC-AAAAATTGTGACG--G---GG---TGGGGTG-----GA---GACAAA-------T-T-------T---------TGTTTCTTTATCTTTTATTT-------T-------ACGAAATA-TGTGTCCACTT-----C-AAAC--------A-TCACG-------TCCAACGTTG-ATAGAAAATGA--------CAATATGGCGGGATTAAAGATG-GAAATT-TCAAGACGAATTGAATAC----GAAATTT-ATTGTA-TTAGCCACGCAGTCTTAAACC--AAACTT-AAACT-----TT-AAAA--TTCCCCGA-T--TTTT-------T-G----------AA---AAAT-------AAAATCGGGGCG----GGT-GAG-----AAAATT------GGGGTGGGCGGGGAT-G--AGAATCTAGGA-A--TTGTT
gi|8 : AA-T-TCATAGATTCTCATCCAA-A--T-TTTG-G-AAAAATTG-G--G--A---GA---TGGGATGAGGATGG---G-CGAA-------TAT-------T---------T---------------ATTTTTATT--C-------AATAAAAA-TGTGTCCACTT-----CCAAAC--------AGTCTCG-------TTAAACGTTG-CTAAAAAATGA--------ACATGTTTTGGGATTAAAAAC---AAATT-T-ATGCCGAGT-GAATGC----GGAACT-GATTATA-TT-GAGGCGTAATTTTAAACC--AAA----AACCT-----TA-AAAA--TTTCTGGGTT--TTTT----GGTT-GATTAAA--AT-A---TAAT--T-A-AAAAATTGGGGGT----GGC-G-G-----AA
gi|9 : GATTCTCACCCAA-T--T-TTTTTT-TAAA-TTGTG--G----------------TT-----GG---G-TGAA-------T-T-------T---------T---------------ATTTTTTCTTTC-------ATGAAAAA-TGTG----------------------------TCACA-------TTCAACGTTG-ATAGAAAATTA--------CAATATGGCAAGATTAAAAGCG-GAAATT-TCATGACAAGTTGAATAC----CG-ACCCAATTATA-TTTGAGACATAGTTTTAAACC--AAA----GAACT-----GT-AAAA--TATCCTGC-T--TTTT----GG-G-G--TAAA--CTTT---TTTT--TTA-AAAAGTTGGGGTG----GGC--------------C----------------GGGAT-G--AGAATATAGGG-A---TGTTTTT----ATTATGACCTtgagaatctag