lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888 3333333333 1111 1111111 1111 6666666666666666666666666 111 11111 11 111111 2222222 1 222222222222 333333 111 1111 111 11 33333333333 888888888888 3333333333 111111 2222222 1 8888 2222222 1 777777777777777777777 77777777777777777777 2222 1 33 1 5555555555555 11 0000000000000000000000000 33 1 1111 6666666666666666 11 2 000000000000000000000000000000000000000000000000000000000000000000000000 11 11 2222222222 222222222222222222222222222222222222222 33333333333 6666666666666666666 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 555555 888888888888888888888 1 222 4
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999 1111111111 99 6 44 8888888 3 77777 1 6666 0 66 333 333 88888888 333 66666666 4444 55 8888888 5555 5555 33 33 777777 1111 33 33 4444444444444444444444444 33 222 2 888888 4 4 2 5 5 66 4 00000 22 55 444444 9 7777777 5 7 1 6 0 9 66 555555555555 1 8 77 1 777777 6 5 7 0 444 6666 111 3 55 99999999999 1 111111111111 2 99 8888888888 999999 1111111 2 7 6 5555 6666666 3 3 0 111111111111111111111 3 88888888888888888888 6 0 2222 0 33 0 3 0 2 7777777777777 0 2 33 5555555555555555555555555 77 0 6 4444 0 5555555555555555 2 8 00 2 3 0 2 222222222222222222222222222222222222222222222222222222222222222222222222 88 00 9999999999 0 1 777777777777777777777777777777777777777 1 99999999999 0 3333333333333333333 5 6 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111 8 8 777777777777777777777 3 7 3 11 666 0
lowQualScore : ..................................................................... .......... .. . .. ....... . ..... . .... . .. ... ... ........ ... ........ .... .. ....... .... .... .. .. ...... .... .. .. ......................... .. ... . ...... . . . . . .. . ..... .. .. ...... . ....... . . . . . . .. ............ . . .. . ...... . . . . ... .... ... . .. ........... . ............ . .. .......... ...... ....... . . . .... ....... . . . ..................... . .................... . . .... . .. . . . . ............. . . .. ......................... .. . . .... . ................ . . .. . . . . ........................................................................ .. .. .......... . . ....................................... . ........... . ................... . . .. ....................................................................................................... ...... . . ..................... . . . .. ... .
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999 9999999999 22 7 22 0000000 1 77777 1 1111 6 33 999 999 88888888 999 44444444 7777 33 8888888 3333 3333 44 44 777777 0000 77 77 8888888888888888888888888 99 999 3 222222 4 0 8 7 0 11 4 44444 22 55 444444 6 0000000 0 4 4 8 2 3 44 888888888888 4 9 99 8 777777 0 0 8 8 000 6666 777 5 00 00000000000 0 333333333333 2 22 2222222222 333333 7777777 8 0 6 0000 8888888 2 2 0 555555555555555555555 2 55555555555555555555 8 2 8888 0 88 0 2 8 5 2222222222222 2 5 88 8888888888888888888888888 22 0 5 8888 8 0000000000000000 0 8 88 8 2 8 2 888888888888888888888888888888888888888888888888888888888888888888888888 33 33 1111111111 2 4 888888888888888888888888888888888888888 4 00000000000 8 4444444444444444444 0 0 00 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444 0 0 000000000000000000000 0 3 3 77 333 0
consensus : AAGTTGANCGGTTTANAGTAGTTNGAATTGAATTGAATNANAGCCCATTGAATACTTA-TAT---ATAAAT---ATTGAAT-ATT------AT--AGG-ATTGAA--TATA----T-GA-A-----TTAT----TTTGTTCA--TCG---A---A-------GGCT---T--TC----A----T--AAAAA---A-GTTT----GCGATTCGGTTTTTATATT----CA--TTTCTCGAT--GAGCAAAATA------AT----T--TA--TATAT------T---------------CAA--TG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAA----CAC--TACCGAAATAGA------AATAAACATTT-ACGAACAGCT-GTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGAAATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGA---C-TTGTACATCAATAAACAAAATTGTCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG---T----ATGGGTGCCCGACACACACT-----TTCAGAC--TAGGCTCAATGTTTTG-C-GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTACTTATTATTTATTTATTTTTAATCAAA-ATTAT-TG------TG--TTTA--T-GTAAAACTCTCAGTAGATA---TTAAC-CATCTC-A-CTGGTCANTTATGGTATGATTATACACGAA-TGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGGTTTTGTGTTTCGTTTANTA--GAGCTAA----AACTGCCGGCCA-CC-GTCCTGCAGATATCTGAA-TTT-CTTTTNTTA--T-GTTTTTAATCGCTTTGGGTC--CTCAATCATAGTATTTTCAGAATTTGATCCTCT--CGG-TGTAATT-CCATTTC-TTCGAGCAGTCTT--TTTTNTTTT-GTTTT-----AT--T-GAAGAC-ACG--TACGTCACCAATA--T----CAGAGAAAGGATCTTCTATCTC------------A--TCTAT-AAA-ATT-----------TGTTCGTCGACTTATTAACTTTCAAATAAT---CA-T-C----GCTTCGAGATTTTTCTTCCAT--TTTTAATTTTACA-GT-CAAATN--CNCATA-AC--------TCGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCTA-GCGTCATAGTTTCAGTTTAGAGTTATCTCCCTTTCC---T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTAT-TTCCGCGATTTTGTT-NAGCTTCCAACAAGA
Reference ( gi|1 ) : AAGTTGG--GGTTT-T--T--TTTCAATAGGATTCA-TTAT----CATTGGTGGCTTA-GATTTAATAAATGGCATTGAATCATT------AT--AGG-ATTGAA--TATA----T-GA-A-----TTGT----TTTGTTCA--TCG---A---A-------GGCT---T--TC----A----T--AAAAA---A-GTTT----GCGATTCGGTTTTTATATT----CA--TTTCTCGAT--GAGCAAAATA------AT----T--TA--TA---------T---------------CAA--TG--CTTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAA----TAC--TACTGAAATAGA------AATACACATGC-ACATACAGCT-GTAGATCTGCAGAATAATTTACACGCTTGGTG-CCGTCAGCAGAAATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGA---A-ATGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG---T----ATGGGTGCCTGACACACACTGATAATCCAGGC--TAGGCTCAATGTTTTGCCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTACTTGTTATTTATTTATTTTTAATCAAA-ATTAT-TG------T---TTTA--TCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATACAAA-TGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTGTTTCGTTTAGTA--GAGCTAATAT-AACTGCTGGCCA-CT-GTC-TGCAGATATCTGAAATTT-TTTTTCTTA--T-GTTTTTAATCG-TCTGGGTA--C--AGTCATAGCATATTCAGAATTTGATCTTC---CGG-TACAATT-CCATTT--TTCGAGCAGTTTTTGTTTTGTTTT-GTTTTTTTAAATCATTGAAGA--ACG--TACGTCACCAGTA--T----CAGAGAAAGGATCTTCTATCTC------------A-ACCT-T-----ATT-----------TGTTCGTTG-CTTATTAACTTTCAAATAAT---TA-T-C----GCTCCAAGATTTTTCTCCCAT--TTCTAATTATCAA-GT-CAAATA--CACTTA-ACGGCCTTAACCGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C---T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTAT-TTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|12 : AAGTTGAC-GGTTTATAGT--TTGAAATTGAATT-A-TAAG----CATTGAATACTTA-TAT---ATAAATA----TGAATTATTTTGTTCATCGAGA-AATGAA--TATA----A-AA-ACAAAATCGCAAACTTTATGGAAGCCG---A---A-------TGCT---T--TC----A----T--AAAAA---A-GTTT----GTGATTCGGTTTTTATATT----AA--TTTCTCGAT--GAACAAAATA------AT----T--CA--TATAT------T---------------CAA--T---CCTA------TAAT
gi|10 : AAGTTGAACGGTTT-A--TAGTTTGAA----ATTGAATTATAGCCCATTGAATACTTA-TAT---ATAAAT---ATTGAAT-ATTTTGCTCATCGAGA-AATGA---TATAAAAAC-GA-A-----TCGCAAACTTTATGGAA-GCG---A---A-------TGCT---T---C----A----T--AAAAA-----GTTT----GTGACTTCGTTTTTATATT----CATTTTTCTCGAT--GAACAAAATA------ATTCCAT--TA--T----------T---------------CAA--T---CCTA------TAATtccatgaaacttatcagcaacacactatcgaaatagaaatatatatttacgaacagctgtagatctgcggactaatatacatgcttggtgacgtcagcagaaattaacagc
gi|6 : ATTGACGGTTTATAATTTG-TAA------TTGAAT---T------AT--AAGCATTGAA--TATA----T-CA-A-----TTAT----TTTGCTCA--TCGAGAA---A-------AGAT---T--------A----T--AAAAA---tccatgaaacttatcagcaacacactatcgaaatagaaatatatattttacgaacagcttgtagatctgcggacaatatacatgcttggtgacgtcagcagaaattaacagcaaatgcgctgctattgttactacaaagaatac
gi|5 : attataggattgaatatataaatcattttactcatcgagaaataagtataaaaacctaatcgcaaactttttttatgaaagccttcagccttcataaagtgtgctattcggATTGTAT-ATC------AT--AGG-ATTGAA--TATA----T-AA-A-----TTAT----TTTGTTCA--TCG---AGAAA-------TGCT---T--TC----A----T--AAAAA---A-GTTTAATTGCGATTCGGTTTTTATATT----CA--TTTCTCAAT--GAGCAAAATA------AT----T--TA--TATAT------T---------------CAA--TG--CTTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAA----TAC--TACtttccatgaaatttatcagtaacactacagaaatagaaataaacatttacgaacagctgcagatctcttgagtgatttacacgcatggtgccgtcggcagaaattaattaacagcaattgcagtttatcacaagatactgagattaggacttgtacatcaataaacaaaattgtcaatcagactcccatttgggctaaataaacgcttcttaggacttgtttgttcgtagacatatttagtgtgcatgtgtgcccgacacactgggctcaatgttttgccggtagatctagtataaatagaagtgtaccttata
gi|5 : atcactgtagatgacctgaccgacggATTGAAT---T------AT--AAGCATTGAA--TATA----T-AA-A-----TTAT----TTTGCTCA--TTG---A---G-------AAATGAAT--------A----T--AAAAACCGA-ATC-----GCAATTAAACTTTTTTATGAAAGCA--TTTCTCGAT--GAACAAAATA------AT----T--TA--TATAT------T---------------CAA--T---CCTA------TGATcctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|2 : atcactgtagatgacctgaccgacggattgtatTCATT------AT--AGA-ATTGAA--TATA----T-GA-A-----TTAT----TTTGCTCA--TCG---A---tacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : aagtttcacatttacacgaagtttacaatttctttttATT------AT--AGG-ATTGAA--TATA----T-AA-A-----TCAT----TTTACTCA--TCG---A---gaaatgaatataaaaaccgaatcgcaaaatttatgaaagccaaaggctttcattaaaaagtttgtgattcgttttctacattcatttcttaataagggcaaaataatctatagatatatattcaatgcttacacgtttaattcaattacaaactaaaaacaattttccatgaaaatcggaaacattgtggatttgcaaacagctgcatatccgcggagtaatttacacgcatgttggccatcaacagaaattaacaccctggtttactacaaggccatcagcttaggacttgtacatcaataacaaaattgccaatcagactcgaatttggggctaaagaaacgctcgccgcttgctggtcaatgtatatttaaaacttatgggtgcctgacacttttgagactaggccggtagtataaaaaacatacatgtatgtacattattctattcgcttgttgtaataactacattatatttcctttttcaaacaatattgtgtgtttatgtaaaacccttaggagtaactttaacccagctggtcacttatggtatggctatatacagagtgaaattctaagaaattaccttgaattattttgacggcccatgttgtgttttgtttagtatagagctaaactgtcgcctgtcctgcagatatttgatttcttttgttgttgtttttcatagctttgggtcctcaatacagtattttcagaattctttccatttcttcgatcagttttggaagacacgtattactatacgtcagagaaaggatcttttatccccggcttttatcgatatctcactataaaaaaacatgttcgttgacttaatcaatatctcgggacttttcttccatatttaattttacagtcaaattcgcataacttcagcaattacatttagcacttctcatcctacgtaatgttttcaat
gi|12 : ATT------AT--AGG-ATTGAA--TATA----T-GA-A-----TTAT----TTTGTTCA--TCG---A---G-------AAAT---TAAT-----A----T--AAAAA---gaaataagtataaaaacctaatcgcaaactttttttatgaaagccttcagccttcataaagtgtgctattcggtttttataatcttttctcgatgagcaaaataattgatatattcaatgcttataattcaattacaaattataaaccgtcaattttccatgaaatttatcagtaacactacagaaatagaaataaacatttacgaacagctgcagatctcttgagtgatttacacgcatggtgccgtcggcagaaattaattaacagcaattgcagtttatcacaagatactgagattaggacttgtacatcaataaacaaaattgtcaatcagactcccatttgggctaaataaacgcttcttaggacttgtttgttcgtagacatatttagtgtgcatgtgtgcccgacacactgggctcaatgttttgccggtagatctagtataaatagaagtgtaccttata
gi|10 : ATT------AT--AGG-ATTGAA--TA-A----TGGA-A-----TTAT----TTTGTTCA--TCG---A---ccgaatcacaaacttttttatgaaagcattcggcttccataaagtttgcgattttgtttttatattcatttctcgatgaacaaaataattcatatttatatataagtattcaatgcttataattcaatttcaaactataaaccgtcaactttccatgaaacttatcagcaacacactatcgaaatagaaatatatatttacgaacagctgtagatctgcggactaatatacatgcttggtgacgtcagcagaaattaacagc
gi|17 : T------AT--GGT-ATTGAA--TAGA----T-AA-A-----TTAT----TTTCCTCA--TCG---A---gaaaaatgaatataaaaacgaagtcacaaactttttatgaagcattcgcttccataaagtttgcgattcgtttttatatcatttctcgatgagcaaaatattcaatatttatatataagtattcaatgggctataattcaatttcaaactataaaccgttcaactttccatgaaacttatcagcaacacactatcgaaatagaaatatatattttacgaacagcttgtagatctgcggacaatatacatgcttggtgacgtcagcagaaattaacagcaaatgcgctgctattgttactacaaagaatac
gi|19 : gaatcgcaaactttttttttatgaatttaaagtctttggctttcataaagtttgcgattcatttttatattcatttcT------AT--AGG-TTTGAACATATA----T-TATA-----TTAT----TCTGTTCA--TCG---A---tcaaatatt
gi|11 : aa--AGA-AATGAA--TATA----G-AA-A-----CTG-----------AA--TCG---C---A-------AACT---T--TTTTTGG----T--GAAAA------TTT----GCGATTCGG--TTTA---T----CA--TTTTTCG-T--GAGCAAAATG------GTA---T--TA--TA---------T---------------TTATTTC--TTTA------TAATgaagtgaatacgaaaaccgaatcacaaacattattaaagc
gi|16 : tTGAA--TAC-----C-GA-A-----TCGCAA--TTTTTTAA--T-G---A---AAACCTTCGGCT---T--TC----A----T--AAA-------GTTT----GCTATTCCATTTTCATATA----CA--CTTTTCGAC--GAACAAttgtgaacaaaatagtttatatattcaatggttataattcaattacgaactataaactgtcattgtttaatgtttatcagcaacctatattaacgaaatagaaataaacatgtacgaacagctgtagacctgcggagaaatatacacgcatggtgccgtcagcagaaattaacagcaagtgcagttgctactgtttactacaagatactgagtttaggacttgtacatcaataaataaaa
gi|6 : ----TTTTTTTA--T-G---A---A-------AGCC---T--TC----AGCCTT--CATAA---A-GTGT----GCTATTCGGTTTTTATAAT----CT--TTTCTCGAT--GAGCAAAATA------AT----TGATA--TA---------TT--------------CAA--TG--CTTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAA----CAC--TACAGAAATAGA------AATAAACATTT-ACGAACAGCT-GCAGATCTCTTGAGTGATTTACACGCATGGTG-CCGTCGGCAGAAATTAATTAAC----A---GCAATTGC-A--GTTTATCACAA--GATACTGAGATTAGGA---C-TTGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG---TGTGCATGTGTGCCCGACACA---------------C--TGGGCTCAATGTTTTGCCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTAtacttatttctcgatgagaaaactaatttatacatt
gi|11 : attataggattgaatatataaatcattttactcatcgagaaataagtataaaaacctaatcgcaaacA--TCG---C---A-------AATT---T--TC----A----CCAAAAAA---A-GTTT----GCGATTCAGTTTCTATATT----CA--TTTCTTTGT--GAACAAAATA------GT----T--TA--TA---------TATT------------CAA--TG--GTTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGCT-GTAGACCTGCGGAGAAATATACACGCATGGTG-CCGTCAGCAGAAATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGA---C-TTGTACATCAATAAATAAAAta
gi|2 : tattataaagaaataaatataataccattttgctcacgaaaaatgataaaccgaCA---A---A-------GGCT---T--TC----A----T--TAAAA---A-GTTT----GTGATTCGTTTTCTACATT----CA--TTTCTTAATAAGGGCAAAATA------AT----C--TA--TAGATATATATT---------------CAA--TG--CTTACACGTTTAATTCAATT-ACAAACTAAAAAC-----AATTTTCC-ATGAA--A----ATCGGAAA----CAT--TG-TGGATT-----------------TGC-A-A-ACAGCT-GCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGAAATTAAC-ACC---------------CTG--GTTTACTACAA--GGCCATCAGCTTAGGA---C-TTGTACATCAATAA-CAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTG---GT---CAATG--TATATTTAAAACTT----ATGGGTGCCTGACAC---TT-----TTGAGAC--TAGGC------------CGGTAG--------TATAAAAAACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTAC--ATTAT--ATTTCCTTTT--TCAAACAATAT-TG------TGTGTTTA--T-GTAAAACCCTTAGGAG-TAACTTTAACCCAGCT------GGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCCA-TGTTGTGTTTTGTTTAGTATAGAGCTAA-----ACTG-TCGCC---T-GTCCTGCAGATATTTGA--TTT-CTTTTGTTG--TTGTTTTTCATAGCTTTGGGTC--CTCAAT-ACAGTATTTTCAGAATT----CTT--------------T-CCATTTC-TTCGATCAGT-----------TTT-G---------------GAAGAC-ACG--TA--TTACTA-TACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCT-C-----ACTATAAAAAAACATGTTCGTTG--------ACTT---AATCAA---TA-T-C-------TCGGGACTTTTCTTCCAT--ATTTAATTTTACA-GT-CAAATT--CGCATA-A----CTT---CAGCAATTACATTTAGC--AC--------------TTCTCATCCTA--CGTAAT-GTT
gi|16 : aagtttcacatttacacgaagtttacaatttcttttttcattatagaattgaatatatgaattattttgctcatcgagaaatgaatataaaaaccgaatcgcaaaatttatgaaagcCG---A---A-------GGTT---T--TC----A----TT-AAAAA---A---TT----GCGATTCGGTATTCATACT----TA--TTTCTCGAT--GAGAAAACTA------AT----T--TA--TA---------ttcaat
gi|6 : ttgttcgtcgaaaagtgtatatgaaaatggaatagcaaactttatgaaagcG---A---A-------GGCT---T--TC----A----T--AAAAA---AAGTTT----GCGATTAGGTTTTTATACT----TA--TTTCTCGAT--GAGTAAAATG------AT----T--TA--TATAT------T---------------CAA--T---CCTA------TAATcatt
gi|2 : -------GGCT---T--TC----A----T--AAA-------TTTT----GCGATTCGGTTTTTATATT----CA--TTTCTCGAT--GAGCAAAATA------AT----T--CA--TATAT------T---------------CAA--TT--C-TA------TAATGAAAAA-AGAAATTGTAAACTagccttcataaagtgtgctattcggtttttataatcttttctcgatgagcaaaataattgatatattcaatgcttataattcaattacaaattataaaccgtcaattttccatgaaatttatcagtaacactacagaaatagaaataaacatttacgaacagctgcagatctcttgagtgatttacacgcatggtgccgtcggcagaaattaattaacagcaattgcagtttatcacaagatactgagattaggacttgtacatcaataaacaaaattgtcaatcagactcccatttgggctaaataaacgcttcttaggacttgtttgttcgtagacatatttagtgtgcatgtgtgcccgacacactgggctcaatgttttgccggtagatctagtataaatagaagtgtaccttata
gi|12 : aagtttcacatttacacga-------GGCT---T--CC----A----T--AAA-------GTTT----GCGATTTTGTTTTTATATT----CA--TTTCTCGAT--GAACAAAATA------AT----T--CA--TA---------TTTATATATAAGTATTCAA--TG--CTTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAA----CACACTATCGAAATAGA------AATATATATTT-ACGAACAGCT-GTAGATCTGCGGACTAATATACATGCTTGGTG-ACGTCAGCAGAAATTAAC-AGC----aaaggctttcattaaaaagtttgtgattcgttttctacattcatttcttaataagggcaaaataatctatagatatatattcaatgcttacacgtttaattcaattacaaactaaaaacaattttccatgaaaatcggaaacattgtggatttgcaaacagctgcatatccgcggagtaatttacacgcatgttggccatcaacagaaattaacaccctggtttactacaaggccatcagcttaggacttgtacatcaataacaaaattgccaatcagactcgaatttggggctaaagaaacgctcgccgcttgctggtcaatgtatatttaaaacttatgggtgcctgacacttttgagactaggccggtagtataaaaaacatacatgtatgtacattattctattcgcttgttgtaataactacattatatttcctttttcaaacaatattgtgtgtttatgtaaaacccttaggagtaactttaacccagctggtcacttatggtatggctatatacagagtgaaattctaagaaattaccttgaattattttgacggcccatgttgtgttttgtttagtatagagctaaactgtcgcctgtcctgcagatatttgatttcttttgttgttgtttttcatagctttgggtcctcaatacagtattttcagaattctttccatttcttcgatcagttttggaagacacgtattactatacgtcagagaaaggatcttttatccccggcttttatcgatatctcactataaaaaaacatgttcgttgacttaatcaatatctcgggacttttcttccatatttaattttacagtcaaattcgcataacttcagcaattacatttagcacttctcatcctacgtaatgttttcaat
gi|17 : attataggattgaatatatgaattattttgttcatcgagaaattaatataaaaaccgaatcacaaacttttttatgaaagcattc-------GGCT---T--TC----A----T--AAA-------GTTT----GCGATTCA-TTTTTATATT----CA--TTTCTCGAT--GAGGAAAATA------AT----T--TATCTAT--------T---------------CAA--TA--C-CA------TA--TCAAAT-A
gi|10 : gaatcgcaaactttttttttatgaatttaaagtctttGCT---T--CC----A----T--AAA-------GTTT----GCGATTCG-TTTTTATAT-----CA--TTTCTCGAT--GAGCAAAATATTCAATAT----T--TA--TA---------TATAAGTATT------CAA--TGGGCT-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAA----CACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGTG-ACGTCAGCAGAAATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATACtt
gi|19 : attataggattgaataatggaattattttgttcatcgagaaaaatgaatataaaaacgaagtcacaaactttttatgaagcattcGCT---T--TA----A----T--AAT-------GTTT----GTGATTCGGTTTTCGTATT----CA--CTTCTCGAT--GAACAGAATA------ATA---T--AA--TA---------T-----------------A--TG--TTCA------
gi|3 : aatataggttCAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAA----CAC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGTT-GTAGATCTGCGGAGTAATGTACA----------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGA---C-TTGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG---T----GTGGGTGCCCGCGACGCAC------TTCAGACTATAGGCTCAATGTTTTGGCTGTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA--TACTTTTTATTTATTTTTAATCAAA-TTTATGTT------T---TTTA--T-GTAAAACTCTCAGTAGATA---T---TACATCCCAA-CTGGTCAGTTATAGTATGATTATAC-CGAA-TGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGATTTGTGTTTTCGTTTAGTA--GAGCTA-----AACT----GCCACCT-GTCTTGCATATATCTGAATTCT-TTTCTGTTAATT-GCTTTGGATC---CT-------C--AATGATAGTATTTTCAGAATTTGGTCCTCT--CAGCTA-ATTT-CCATTTC-TTAGAGCAG-----G----GTTTT--TTTT-----ATCATAGAAAAACACG--CACGTCACCAATA--TCATGCAGAGAAAGGATTTTCTTTCTC------------A---CTAT-----ATT-----------TGTTCGTTGACTTATTAACTTTCAAATAATGAATA-T-C-------TCGAGATGTTTCTTCCAT--TTTTAATTTTACA-GT-TATATGTTCACATA-AC--------TCGGCAATTACATTTAGCAGACGCATG-----------TC---------------AGTT-CAG-----AGTTATCTCCCTTTCT---T-A-TTTGTACA------AT-----------TTTAGTTTTGAATTTAC-TTCTATGATTTTGT--AAGCTTTCAATAAGA
gi|9 : AATTTTCCGATGAA--AATTTATCAGCAA----TAC--TACCAAAATAAA------AATACACAT-T-ACAAACAGCT-GTAGATCTGCGGAGT---TTACACACATGGTG-CCGTCGACAGAAAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG---T----ATGGATGCCTGACACACAGTGATAATTCAGGC--TAGGCTTAAT-TTTTGTCTCTAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCAAGTTtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|20 : aGAA--A-TGTATCAGCAA----CAT--TACTGAAATAGA------AATAAACATTT-ACACACAGCT-GTAGATCTGTGGAGTAATGTACACGC
gi|5 : AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTT---------------------TAGGA---C-ATGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG---T----ATGGGTGCCCGACACACA---GTAATTCAGGT--TAGGCTCAATG------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTACTT----TTTATTTATTTTTAATCAAA-ATTAT--G------TG--TTTA--T-GTAAAACTCTTAGTAGATA---TTAA--------------------------ATGATTATACA-GAA-TGAAATTCTAA--GA-A---------ATTACCTTGA--------------------TTTATTA--GAGCTAATTTCAAAT-CTG-CCA-CCCGTCCTGCAGATATCTGA--TTTCTTTTTTTTA--T-GTTTTTAATCGCTTTGGGTC--CTCAGTCATA---T-TTCAGAATTTGATCCTCTCTCGG--GTAATT-CCATTTCTTTC-AGCACTTTTTTTTTTTTTTTTATTTTTTTAAatag
gi|4 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccct---TCGTAGACATATTT-AA---T----GTGGGTGCCCGAC-C-CACTG------CAGAT--TAGGCTCAATGT---------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTACTTTTTATTTATTTATTCTTAATCAAA-ATTAT-GGGGTTTTT---TTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA-GAA-TGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGT-CCCGATTTGTGTTTCGTTTATTA--GAGTTA-----AATTGCCGCCTA-T---CC-TGCAGATATCTTAA--TT-CTTTTCTTA--T-GTTAATAATTGCTTTGAGTCCTC--AATCATAGTATTTTCAGAATTTGATCCTCT--TGG-T-TAATTCCCATTTC-TTTGAGCAGTCTT--TTTTATT-------------AT--TTGAAGAC-ACGTATACATCACCAATG--T----CGGAGAAAGGATCTTCTATCTC------------A---CTAT-----ATT-----------TGTTCGTTGACTTATTAACTTTCAAATAAT---GA-TAA----GCT-CGAGATTTTTCTTCCAT--TTCTAATTTTACA-GT-CACATT--CTCATA-AC--------TCGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCTA--CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT---T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTAT-TTCTGTGATTTTGTT-TAGCTTCCAACAAGAg
gi|13 : gaTA--T----CAGAGAAAAGACATTCTTTCTC------------G-CTAT-TTAAA-ATT-----------TGTACGT----CTATT-TCTTTAAAATAGT---CA-T-CATTTGGTCGGATTTTTTTCTTCCGT--TTTTAATT-CCACTGTAAAAATC--CAC--A-AC--------TCGGCAAGT-CGTT-----------TG--AA--A--CTT---------GCATCAT-TTTTCAATTAG-AGTTATCTCCCTT--CCCTT-A-TATGTAtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|7 : tttatcagaagaagaaccaattggccTTCTATCTC------------A--CTT-TCAAAAATC-----------TGTATGTCA-C--GTT--CTTTCAAATAAT---CAAT-T----TCTTTGA-ATTTTTCTTCCATGTTTCTACT-----------AAACA--TTCCCATACTGC-------GGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCTGAG--TCAT--TTTCAACTTAGAGTTATCTTCCTTTCC---TCA-TTTGTACA---TT--TG-ACA--------TCGTTTTG-TTTGATGTTGCGCAATTCTGTTCtggtagggtaaac
gi|21 : actttggaccctcaataatttttttttcagaatttgcttctctcgggtttctttccatttcttcaatcattttttttttcattatttgaagacttgcatacaCATAGGT-CAGGTTAGAGTTATCTCCTTT--CT--T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTTgttttgaaacaagatgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|18 ): ACGATTTTGTGTAGCTTCCAAACATAAAAACTTGATTAAAGTTTAAATAATTCAGTTGAAATTTAATGGCCAATATCAGATTTTACTAAAACC
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 2 444 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 1111111111111111111 11 111111 11111 111 111 111111111 5555555555 55555555555555 111 1111111 1111 1111 2 2222222 111 555555555555 111 222222 111 333333333333333333333 3333333 55555555555555555555555555555555 1111 1111 99999999999999999999999999999999 11111 222222222 3333333333 1 666666666666666666666666666666 22222222222222222222 1 11
lowQualScore : 7 666 7 1 8 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6666 6666 66 4444 6666 0 33 33 888888 3 77 6666666666666666666 888888 777 3 999999 4 4 5 4 55 4 8888 11 0 222222 4 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 2 111 3 1 000 5 555555555 7777777777 77 22222222222222 1 888 8888888 0 1 7777 8 4444 0 0 5 6666666 8 0 444 111111111111 3 888 8 8 0 0 000000 8 222 666666666666666666666 88 0 3 11 8 0 1 1 6 2 1 99 3 2222222 6 55555555555555555555555555555555 8 0 9999 3 8 4444 1 66666666666666666666666666666666 33 44444 3 777777777 1 99 0 3 1 6 9999 1 1111111111 3 3 2 666 000000000000000000000000000000 1 3 1 1 6 6 6 00000000000000000000 0 1 0 7 2 3 11 0 3
lowQualScore : . ... . . . . ......................................................................................................................................... .... .... .. .... .... . .. .. ...... . .. ................... ...... ... . ...... . . . . .. . .... .. . ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . ......... .......... .. .............. . ... ....... . . .... . .... . . . ....... . . ... ............ . ... . . . . ...... . ... ..................... .. . . .. . . . . . . . .. . ....... . ................................ . . .... . . .... . ................................ .. ..... . ......... . .. . . . . .... . .......... . . . ... .............................. . . . . . . . .................... . . . . . . .. . .
lowQualScore : 0 000 3 0 0 8 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 1111 88 0000 1111 1 99 99 888888 1 33 8888888888888888888 888888 777 3 666666 4 2 0 4 55 0 5555 00 7 888888 8 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 5 777 2 5 000 7 333333333 0000000000 99 44444444444444 4 666 6666666 4 4 0000 0 4444 8 2 0 0000000 0 8 000 444444444444 8 888 0 0 8 6 444444 0 000 444444444444444444444 88 8 8 88 0 8 0 4 7 5 5 22 2 5555555 7 88888888888888888888888888888888 0 8 2222 2 0 2222 0 55555555555555555555555555555555 22 22222 7 333333333 7 22 3 5 0 7 3333 0 0000000000 2 7 0 888 111111111111111111111111111111 7 6 0 7 7 7 7 66666666666666666666 8 0 5 0 0 2 00 2 2
consensus : AAGTTGA-CGGTTTA---TAGTTNG-AATTGAATATATGAATTATTTTGCCCATCGAANA-TTA-AT---ATAAA-T---ATT-------------GAAT-ATC------AT--AGAA-TTGAATAT----ACGAA-TC----ACTTT-T-TAA--TCGA---A-------GGCTTTC----A----T--AAAA-AAGTTT----GCGATTCGGTTTTTATATTCA--TTTCTCGAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCCCGACACACANT-A---TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTAA--CATCTC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T-AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG-T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCTATCTC--------A-C--TA--T-----------AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCT---TCGAGA--TTTTTCTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATA-TTTCAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : AAGTTGANCGGTTTANAGTAGTTNG-AATTGAAT---TGAATNANA--GCCCATTGAATACTTATAT---ATAAA-T---ATT-------------GAAT-ATT------AT--AGGA-TTGAATAT----ATGAA-TT----ATTTTGT-TCA--TCGA---A-------GGCTTTC----A----T--AAAA-AAGTTT----GCGATTCGGTTTTTATATTCA--TTTCTCGAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATAAACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCCCGACACACACT-----TTCAGAC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATTGTGTTT-------AT-GTAAAACTCTCAGTAGATA---TTAAC-CATCTC-A-CTGGTCANTTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGGTTTTGTG-TTTCGTTTA--NTAGAGCTAA----AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTNTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG-TGTAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCTATCTC--------ATC--TA--T-----------AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATCA-TCGCT---TCGAGA--TTTTTCTTCCATTTTTAATTTTACAGTCAA-A--TNCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATAGTTTCAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCCGCGATTTTGTT-NAGCTTCCAACAAGA
gi|1 : CATTGGTGGCTTAGATTTAATAAA-TGGCATT-------------GAATCATT------AT--AGGA-TTGAATAT----ATGAA-TT----GTTTTGT-TCA--TCGA---A-------GGCTTTC----A----T--AAAA-AAGTTT----GCGATTCGGTTTTTATATTCA--TTTCTCGAT--GAGCAAAATA------AT-T--TATA------T---------------------CAATG--C-TTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGTG-CCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCCTGACACACACTGATAATCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTATTGT-TTT-------ATCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATAC-AAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTG-TTTCGTTTA--GTAGAGCTAATAT-AACTGCTGGCCACT-GT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGG-TACAA-TTCC-ATTT-TTCGAGCA--GTTTTTGTTTTGTTTTGTTTTTTTAAATCATTG-AAGA-ACGTA--CGTCACCA-GTAT----CAGAGAAAGGATCTTCTATCTC--------AAC--CT--T--------------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCT---CCAAGA--TTTTTCTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTATTTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatAAGTTGAACGGTTTA---TAGTTTG-AA----AT---TGAATTATA--GCCCATTGAATACTTATAT---ATAAA-T---ATT-------------GAAT-ATTTTGCTCATCGAGAA-ATG-ATATAAAAACGAA-TCGCAAACTTTATGGAA--GCGA---A-------TGC-TTC----A----T---AAA-AAGTTT----GTGACTTCGTTTTTATATTCATTTTTCTCGAT--GAACAAAATA------AT-TC-CAT-------T------------AT------TCAAT---C-CTA------TAAT
gi|10 : GCTTCC----A----T--AAA----GTTT----GCGATTCG-TTTTTATAT-CA--TTTCTCGAT--GAGCAAAATATTCAATAT-T--TATA------T------------ATAAGTATTCAATGGGC-T-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGTG-ACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATACtccatgaaacttatcagcaacacactatcgaaatagaaatatatattttacgaacagcttgtagatctgcggacaatatacatgcttggtgacgtcagcagaaattaacagcaaatgcgctgctattgttactacaaagaatac
gi|11 : attataggattgaataatggaattattttgttcatcgagaaaaatgaatataaaaacgaagtcacaaactttttatgaagcattcTGA-CAGTTTA---TAGTTCGTAATTGAAT---T--ATAA------CCATTGAATA------T---ATAAACT---ATT-------------T--T-GTTCAC---AA--AGAA-ATGAATAT----AGAAA-CT----G--------AA--TCGC---A-------AACTTTTTTTGG----T--GAAA-A--TTT----GCGATTCGG--TTTA---TCA--TTTTTCG-T--GAGCAAAATG------GT-A--T-TA------T------------AT------TTATTT--CTTTA------TAAT
gi|11 : tA--TCGC---A-------AATTTTC----A----CCAAAAA-AAGTTT----GCGATTCAGTTTCTATATTCA--TTTCTTTGT--GAACAAAATA------GT-T--TATA------T------------AT------TCAATG--G-TTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGTG-CCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAAttgtttaatgtttatcagcaacctatattaacgaaatagaaataaacatgtacgaacagctgtagacctgcggagaaatatacacgcatggtgccgtcagcagaaattaacagcaagtgcagttgctactgtttactacaagatactgagtttaggacttgtacatcaataaataaaa
gi|12 : tattataaagaaataaatataataccattttgctcacgaaaaatgataaaccgaTAG-GATTGAATATATGAATTATTTTGTTCATCGAGAAATTA-AT---ATAAA-A---ACC-------------GAAT---C------AC--AAAC-TTT--TTT----ATGAAAGC----ATTC------------------------GGCTTCC----A----T--AAA----GTTT----GCGATTTTGTTTTTATATTCA--TTTCTCGAT--GAACAAAATA------AT-T--CATA------TTTATATATAAGTAT------TCAATG--C-TTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGTG-ACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCTTTCTC--------G-C--TATTT-----------AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A---ATCCACAAC--------T-CGGCAAGT------------CGTTTG--AA--A----------CT-TGCATCAT-TTTTCAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTGAATAC-----CGAA-TCGCA-ATTTT-T-TAA--T-GA---AAACCTTCGGCTTTC----A----T--AAA----GTTT----GCTATTCCATTTTCATATACA--CTTTTCGAC--GAACAAtggtagggtaaac
gi|16 : CGA---A-------GGTTTTC----A----TT-AAAA-AA--TT----GCGATTCGGTATTCATACTTA--TTTCTCGAT--GAGAAAACTA------AT-T--TATA------C------------AT------Ttacttatttctcgatgagaaaactaatttatacatt
gi|17 : ttgttcgtcgaaaagtgtatatgaaaatggaatagcaaactttatgaaagc-------GGCTTTC----A----T--AAA----GTTT----GCGATTCA-TTTTTATATTCA--TTTCTCGAT--GAGGAAAATA------AT-T--TATC------T------------AT------TCAATA--C--CA------TA--TCAAAT-A
gi|19 : gaatcgcaaactttttttttatgaatttaaagtctttGCTTTA----A----T--AAT----GTTT----GTGATTCGGTTTTCGTATTCA--CTTCTCGAT--GAACAGAATA------ATATAATATA------T------------GT------TCAA-A--C-CTA------TAtt
gi|2 : aaTAG-AATTGAATATATGAATTATTTTGCTCATCGAGAAATGA-AT---ATAAA-A---ACC-------------GAAT---C------GC--AAAA-TT-----T----ATGAA-------A---------G--CCAA---A-------GGCTTTC----A----T--TAAA-AAGTTT----GTGATTCGTTTTCTACATTCA--TTTCTTAATAAGGGCAAAATA------AT-C--TATAGATATAT------------AT------TCAATG--C-TTACACGTTTAATTCAATT-ACAAACTAAAAAC-----AATTTTCC-ATGAA--A----ATCGGAAAC----AT--TG------TGGA--------------TTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAATAA-CAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GTA----TATTT-AAAACTT----ATGGGTGCCTGACAC---TT-----TTGAGAC--TAGGC--------------C--G--G---TAGTATA-AAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTAT-ATTTCCTT--TTTCAAACAATATTGT-GTGTTT-------AT-GTAAAACCCTTAGGAG-TAACTTTAAC-C----C-AGCTGGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCC-ATGTTGTG-TTTTGTTTAGTATAGAGCT-A----AACTGTC-GC--CT-GTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT------------TTCC-ATTTCTTCGATCA--G-----------TTTTG---------------G-AAGACACGTA----TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATA--TCTCACTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC------TCGGGA--CTTTTCTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC--AC--------------TTCTCATCCT-A-CGTAATGTTTTCAAT
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAG
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTT
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTTTTT-------AT-GTAAAACTCTCAGTAGATA---TTA---CATCCCAA-CTGGTCAGTTATAGTATGATTATAC-C-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGA-TTTGTGTTTTCGTTTA--GTAGAGCT-A----AACT----GCCACCTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG-C-TAATTTCC-ATTTCTTAGAGCAGGGTTTT--TTTTA-------TC--------ATAGAAAAACACGCA--CGTCACCA-ATATCATGCAGAGAAAGGATTTTCTTTCTC--------A-C--TA--T--------------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATC---TCGAGA--TGTTTCTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGCATG--------------------------------TCAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTAC------AAT-----------TTTAGTTTTGAATTTACTTCTATGATTTTG-T-AAGCTTTCAATAAGA
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCCCGACCCAC--------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATGGGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--TTAGAGTTAA----A-TTGCCGCCTA----TCCTGCAGATATCTT-AATT-CTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG-T-TAA-TTCCCATTTCTTTGAGCA--GTCTT--TTTTATTAT--------------TTG-AAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCTATCTC--------A-C--TA--T-----------A---TTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGC---TCGAGA--TTTTTCTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCT-A-CGTCACA-TTTCAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTATTTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : ga---ATT-------------GTAT-ATC------AT--AGGA-TTGAATAT----ATAAA-TT----ATTTTGT-TCA--TCGAGAAA-------TGCTTTC----A----T--AAAA-AAGTTTAATTGCGATTCGGTTTTTATATTCA--TTTCTCAAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacgg----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCCCGACACACAGTAA---TTCAGGT--TAGGCTCAATG---------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTAT-GTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTAA--------------------------ATGATTATACA--GAATGAAATTCTAAG-AA-AT----------TACCTTGA---------------------TTTA--TTAGAGCTAATTTCAAAT--CTGCCACCCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG--GTAA-TTCC-ATTTCTTTCAGCA----CTT--TTTTTTTTTTTTTT--------ATTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctAAATTGA-CGGTTTATAAT--TTGT-AATTGAAT---T--ATAAG------CATTGAATA----TAT----CAAT-T---ATTTTGCTCATCGAGAAAAG-ATT------AT--AAAAACCGAATA-------GCA-C-----ACTTTAT-GAAGGCTGA---A-------GGCTTTC----A----T--AAAAAAAGTTT----GCGATTAGGTTTTTATACTTA--TTTCTCGAT--GAGTAAAATG------AT-T--TATA------T------------AT------TCAAT---C-CTA------TAATtttttaag
gi|6 : ----ACTTTTT-TTA--T-GA---A-------AGCCTTC----AGCCTT--CATA-AAGTGT----GCTATTCGGTTTTTATAATCT--TTTCTCGAT--GAGCAAAATA------AT-T--GATA------T------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGTG-CCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCCCGACAC---------------AC--TGGGCTCAATGTTTTG---CCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTATtccatgaaatttatcagtaacactacagaaatagaaataaacatttacgaacagctgcagatctcttgagtgatttacacgcatggtgccgtcggcagaaattaattaacagcaattgcagtttatcacaagatactgagattaggacttgtacatcaataaacaaaattgtcaatcagactcccatttgggctaaataaacgcttcttaggacttgtttgttcgtagacatatttagtgtgcatgtgtgcccgacacactgggctcaatgttttgccggtagatctagtataaatagaagtgtaccttata
gi|7 : attataggattgaatatataaatcattttactcatcgagaaataagtataaaaacctaatcgcaaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGGGTTTCT-TTCC-ATTTCTTCAATCA-----TT--TTTTTTTTCATTAT---------TTG-AAGAC---------TTGC---ATA-----CA-----------TTCTATCTC--------A-C--TT--TCA---------AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCT---TTGA-A--TTTTTCTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCT--GAGTCAT--TTTCAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACA---TT--TG-ACA-T-CG-TTTTGTTT-GATGTTG----CGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGTG-CCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCCTGACACACAGTGATAATTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|18 ): ACGATTTTGTGTAGCTTCCAAACATAAAAACTTGATTAAAGTTTAAATAATTCAGTTGAAATTTAATGGCCAATATCAGATTTTACTAAAACC
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 3333333333333333333333333333333333333333333333333333333333333333333333 111 111111 111111 11111111111111111111 111111 11 111111 11111 111 111 111111111 5555555555 55555555555555 111 1111111 1111 11 1111 2222222 111 3333333333333 111 111111 111 444444 22222222222 11111111 55555555555555555555555555555555 1111 1111 5555555555555555555 444444 11111 2222222222 3333333333 1 666666666666666666666666666 22222222222222222222 1
lowQualScore : 6 1 99 3 6 44 33333333333 1111111111111111111111111111111111111111111111111111111111111111111111 88888 7777 7777 333 999 7777 1 55 000000 3 555555 99999999999999999999 55 4 111111 4 1 5 4 55 4 8888 11 222222 2 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 1 111 3 1 000 0 5 555555555 77 7777777777 0 77 22222222222222 1 888 8888888 0 1 7777 8 77 1 0 0000 6666666 8 0 444 0000000000000 3 888 8 8 0 0 444444 8 222 555555 22222222222 88 0 3 0 8 0 1 1 6 2 1 99 3 99999999 6 55555555555555555555555555555555 8 0 9999 3 8 4444 1 1111111111111111111 99 3 777777 33 44444 1 0000000000 1 99 0 3 1 6 99 7 1111111111 3 3 2 333333333333333333333333333 3 5 5 1 1 6 6 6 00000000000000000000 0 1 0 7 0 8 0
lowQualScore : . . .. . . .. ........... ...................................................................... ..... .... .... ... ... .... . .. ...... . ...... .................... .. . ...... . . . . .. . .... .. ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . . ......... .. .......... . .. .............. . ... ....... . . .... . .. . . .... ....... . . ... ............. . ... . . . . ...... . ... ...... ........... .. . . . . . . . . . . .. . ........ . ................................ . . .... . . .... . ................... .. . ...... .. ..... . .......... . .. . . . . .. . .......... . . . ........................... . . . . . . . . .................... . . . . . . .
lowQualScore : 0 0 55 2 7 11 55555555555 5555555555555555555555555555555555555555555555555555555555555555555555 33333 1111 1111 888 444 1111 4 00 555555 6 555555 11111111111111111111 55 0 555555 4 1 0 4 55 0 5555 00 888888 6 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 0 777 2 5 000 1 7 333333333 99 9999999999 4 99 44444444444444 4 666 6666666 4 4 0000 0 66 0 8 8888 0000000 0 8 000 4444444444444 6 888 0 0 8 6 666666 0 000 444444 88888888888 88 8 8 8 0 8 0 4 7 5 5 22 2 88888888 7 88888888888888888888888888888888 0 8 2222 2 0 2222 0 7777777777777777777 22 5 555555 22 22222 0 8888888888 7 22 3 5 0 7 22 5 0000000000 2 7 0 777777777777777777777777777 9 7 7 0 7 7 7 7 66666666666666666666 8 0 5 0 8 0 8
consensus : NNNNTGACAGTTTATAGTTAG-GATTGAATATATG-AATTATTTTGCTCATCGAGAAATTA-A-TATAAA-----ATTGAAT-ATCGCA--GAATTGAAT-TACGAA---CTTT-TTAATCGA---A-------G-----GCT-----TTC----A----T---AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : AAGTTGACGGTTTATAGTTNG-AATTGAATATATG-AATTATTTTGCCCATCGA-ANATTA-A-TATAAA-T---ATTGAAT-ATCATA--GAATTGAATATACGAATCACTTT-TTAATCGA---A-------G-----GCT-----TTC----A----T---AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACANT----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCTC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
gi|1 : -AGATTT-A--ATAAA-TGGCATTGAATCATTATA--GGATTGAATATATGAATTGTTTTGTTCATCGA---A-------G-----GCT-----TTC----A----T---AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT---------------------CAATG--C-TTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCC--TGACACACACTGATAA-TCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTATTGT-TTT-------ATCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATAC-AAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTG-TTTCGTTTA--GTAGAGCTAATAT--AACTGCTGGCCACT-GT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGG--TACAA-TTCC-ATTT-TTCGAGCA--GTTTTTGTTTTGTTTTGTTTTTTTAAATCATTG-AAGA-ACGTA--CGTCACCA-GTAT----CAGAGAAAGGATCTTCT-------------------ATCTCAACCT-T------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCTC---CAAGATTTTT--CTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTATTTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatcattggtggcttTAG-GATTGAATA-ATGGAATTATTTTGTTCATCGA-GAA---------AAA-T------GAAT-AT---A--AAAACGAAGTCACAAA---CTTT-TTA--TGA---A-------GCATTCGCT-----TCC----A----T---AAA---GTTT----GCGATTCG-TTTTTATAT-CATTTCTCGAT--GAGCAAAATATTCAATAT-T------TATAT------------ATAAGTATTCAATGGGC-T-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATAC
gi|11 : attaTGACAGTTTATAGTTCGTAATTGAAT-TATA-A----------CCATTGA-ATAT------ATAAACT---ATTTTGT--TCACAAAGAAATGAATATA-GAA--ACTG----AATCGC---A-------A-----ACT-----TTTTTTGG----T---GAAAA--TTT----GCGATTCGG--TTTA---TCATTTTTCG-T--GAGCAAAATG------GT-A------T-TAT------------AT------TTATTT--CTTTA------TAAT
gi|11 : tAATCGC---A-------A-----ATT-----TTC----A----CCA-AAAAAAGTTT----GCGATTCAGTTTCTATATTCATTTCTTTGT--GAACAAAATA------GT-T------TATAT------------AT------TCAATG--G-TTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAAttgtttaatgtttatcagcaacctatattaacgaaatagaaataaacatgtacgaacagctgtagacctgcggagaaatatacacgcatggtgccgtcagcagaaattaacagcaagtgcagttgctactgtttactacaagatactgagtttaggacttgtacatcaataaataaaa
gi|12 : tattataaagaaataaatataataccattttgctcacgaaaaatgataaaccgTAG-GATTGAATATATG-AATTATTTTGTTCATCGAGAAATTA-A-TATAAA----------------------AACCGAAT-CACAAA---CTTT-TTTAT-GA---AAGCATTCG-----GCT-----TCC----A----T---AAA---GTTT----GCGATTTTGTTTTTATATTCATTTCTCGAT--GAACAAAATA------AT-T------CATATTTATATATAAGTAT------TCAATG--C-TTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCT-------------------TTCTCG--CTATTT-AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A--ATC-CACAAC--------T-CGGCAAGT------------CGTTTG--AA--A----------CT-TGCATCATTTTT-CAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTTGTTCGTCGA-AAAGTGTA-TATGAA-A---ATGGAAT-AGCA-----AACT---T-TATGAA----------AGCCGA---A-------G-----GTT-----TTC----A----TT--AAAAAA--TT----GCGATTCGGTATTCATACTTATTTCTCGAT--GAGAAAACTA------AT-T------TATAC------------AT------Ttggtagggtaaac
gi|17 : TGG-TATTGAATAGATA-AATTATTTTCCTCATCGAGAAATGA-A-TATAAA-----AATGA---ATCGCA--AACTT-----TATGAA----------AGCCAA---A-------G-----ACTTTAAATTC----A----TAAAAAAAAAGTTT----GCGATTC
gi|17 : -------G-----GCT-----TTC----A----T---AAA---GTTT----GCGATTCA-TTTTTATATTCATTTCTCGAT--GAGGAAAATA------AT-T------TATCT------------AT------TCAATA--C--CA------TA--TCAAAT-Atatcaaatatt
gi|18 : gaatcgcaaactttttttttatgaatttaaagtctttCGATTTTGTG-TAGCTTCCAAtt
gi|19 : a-----GCT-----TTA----A----T---AAT---GTTT----GTGATTCGGTTTTCGTATTCACTTCTCGAT--GAACAGAATA------ATATAA----TATAT------------GT------TCAA-A--C-CTA------TAacataaaaacttgattaaagtttaaataattcagttgaaatttaatggccaatatcagattttactaaaacc
gi|2 : aaTAG-AATTGAATATATG-AATTATTTTGCTCATCGAGAAATGA-A-TATAAA-A---ACCGA---ATCGCA--AAATT-----TATGAA----------AGCCAA---A-------G-----GCT-----TTC----A----T---TAAAAAGTTT----GTGATTCGTTTTCTACATTCATTTCTTAATAAGGGCAAAATA------AT-CTATAGATATAT------------AT------TCAATG--C-TTACACGTTTAATTCAATT-ACAAACTAAAAA-----CAATTTTCC-ATGAA--A----ATCGGAAAC----AT--T------GTGG--------------ATTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAAT-AACAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GT----ATATTT-AAAACTT----ATGGGTGCC--TGACAC----T----T-TTGAGAC--TAGGC--------------C--G--G---TAGTATA-AAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTA-TATTTCCT--TTTTCAAACAATATTGT-GTGTTT-------AT-GTAAAACCCTTAGGAG-TAACTTTA--AC--CCA-G-CTGGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCC-ATGTTGTG-TTTTGTTTAGTATAGAGCTA------AACTGTC-GC--CT-GTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT-------------TTCC-ATTTCTTCGATCA--G-----------TTTTG---------------G-AAGACACGTA----TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCTCA--CTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC---T---CGGGACTTTT--CTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC--AC--------------TTCTCATCCT-A-CGTAATGTTT-
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAGtcaat
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTT
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC---------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTTTTT-------AT-GTAAAACTCTCAGTAGATA---TT---ACATCCCAA-CTGGTCAGTTATAGTATGATTATAC-C-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGA-TTTGTGTTTTCGTTTA--GTAGAGCTA------AACT----GCCACCTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG--C-TAATTTCC-ATTTCTTAGAGCAGGGTTTT--TTTTA-------TC--------ATAGAAAAACACGCA--CGTCACCA-ATATCATGCAGAGAAAGGATTTTCT-------------------TTCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATCT---CGAGATGTTT--CTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGC-------------------------------ATGT-CAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTAC------AAT-----------TTTAGTTTTGAATTTACTTCTATGATTTTG-T-AAGCTTTCAATAAGA
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCC--CGACCCAC---------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATGGGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--TTAGAGTTAA------ATTGCCGCCTA----TCCTGCAGATATCTT-AATT-CTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG--T-TAA-TTCCCATTTCTTTGAGCA--GTCTT--TTTTATTAT--------------TTG-AAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---A---TTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGCT---CGAGATTTTT--CTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCT-A-CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTATTTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : ga---ATTGTAT-ATCATA--GGATTGAATATATAAATTATTTTGTTCATCGAGAAA-------T-----GCT-----TTC----A----T---AAAAAAGTTTAATTGCGATTCGGTTTTTATATTCATTTCTCAAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacgg----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT----AATTCAGGT--TAGGCTCAATG---------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTATG-TGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--A------------------------ATGATTATACA--GAATGAAATTCTAAG-AA-AT----------TACCTTGA---------------------TTTA--TTAGAGCTAAT-TTCAAAT--CTGCCACCCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG--G-TAA-TTCC-ATTTCTTTCAGCA----CTT--TTTTTTTTTTTTTT--------ATTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctTAG-GATTGAATATATA-AATCATTTTACTCATCGA-GAAATA-AGTATAAA---------AAC-CT-------AATCG------CAAA-CTTTTT-TTA--TGA---A-------A-----GCC-----TTC----AGCCTT---CATAAAGTGT----GCTATTCGGTTTTTATAATCTTTTCTCGAT--GAGCAAAATA------AT-T------GATAT------------AT------TCAATG--C-TTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGT-GCCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCC--CGACACA----------------C--TGGGCTCAATGTTTTG---CCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTATtttttaag
gi|7 : attaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGGGTT-TCT-TTCC-ATTTCTTCAATCA-----TT--TTTTTTTTCATTAT---------TTG-AAGAC---------TTGC---ATA-----CA-----------TTCT-------------------ATCTCA--CTTTCA-AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCTT---TGA-ATTTTT--CTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCT--GAGTCAT-TTT-CAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACA---TT--TG-ACA-T-CG-TTTTGTTT-GATGTTG----CGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGT-GCCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCC--TGACACACAGTGATAA-TTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 111 111111 222222222222222222222222222 111111 11 111111 11111 111 111 111111111 66666666666 55555555555555 111 1111111 1111 1111 111 2222222 111 3333333333333 111 111111 111 444444 22222222222 11111111 55555555555555555555555555555555 1111 1111 5555555555555555555 444444 11111 2222222222 3333333333 1 666666666666666666666666666 22222222222222222222 1
lowQualScore : 3 0 8 8888 888888888888888888888888888888888888888888888888888888888888888888888888888 0000000 111 8888 2 55 111111 4 55 666666666666666666666666666 66 222222 4 4 5 4 55 4 8888 11 0 222222 2 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 1 111 3 1 000 5 555555555 77 44444444444 0 77 22222222222222 1 888 8888888 0 1 7777 8 4444 0 555 6666666 8 0 444 5555555555555 3 888 8 8 0 0 444444 8 222 555555 22222222222 88 0 3 0 8 0 1 1 6 2 1 99 3 99999999 6 55555555555555555555555555555555 8 0 9999 3 8 4444 1 1111111111111111111 99 3 777777 33 44444 1 0000000000 1 99 0 3 1 6 99 7 1111111111 3 3 2 333333333333333333333333333 3 5 5 1 1 6 6 6 00000000000000000000 0 1 0 7 0 8 0
lowQualScore : . . . .... ........................................................................... ....... ... .... . .. ...... . .. ........................... .. ...... . . . . .. . .... .. . ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . ......... .. ........... . .. .............. . ... ....... . . .... . .... . ... ....... . . ... ............. . ... . . . . ...... . ... ...... ........... .. . . . . . . . . . . .. . ........ . ................................ . . .... . . .... . ................... .. . ...... .. ..... . .......... . .. . . . . .. . .......... . . . ........................... . . . . . . . . .................... . . . . . . .
lowQualScore : 2 0 7 0000 444444444444444444444444444444444444444444444444444444444444444444444444444 5555555 888 5555 5 55 555555 0 55 888888888888888888888888888 11 888888 4 2 0 4 55 0 5555 00 7 888888 6 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 0 777 2 5 000 7 333333333 99 66666666666 4 99 44444444444444 4 666 6666666 4 4 0000 0 4444 8 888 0000000 0 8 000 0000000000000 6 888 0 0 8 6 666666 0 000 444444 88888888888 88 8 8 8 0 8 0 4 7 5 5 22 2 88888888 7 88888888888888888888888888888888 0 8 2222 2 0 2222 0 7777777777777777777 22 5 555555 22 22222 0 8888888888 7 22 3 5 0 7 22 5 0000000000 2 7 0 777777777777777777777777777 9 7 7 0 7 7 7 7 66666666666666666666 8 0 5 0 8 0 8
consensus : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAATNAATA--T-AAAA--CCGAAT-ATCGC--A-GAATTGAA-T-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : NNNNTGACAGTTTATAGTTAGGATTGAATATATG-AATTATTTTGCTCATCGAGAAATTAATA--T-AAAA--TTGAAT-ATCGC--A-GAATTGAA-T-TACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
gi|1 : TTAATAAAT-GGCA--TTGAATCATTAT--A-GGATTGAA-TATATGAATTGTTTT-------GTTCATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T--TATA------T---------------------CAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGTG-CCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCC--TGACACACA-CTGATAA-TCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTATTGT-TTT-------ATCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATAC-AAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTG-TTTCGTTTA--GTAGAGCTAATAT--AACTGCTGGCCACT-GT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGG--TACAA-TTCC-ATTT-TTCGAGCA--GTTTTTGTTTTGTTTTGTTTTTTTAAATCATTG-AAGA-ACGTA--CGTCACCA-GTAT----CAGAGAAAGGATCTTCT-------------------ATCTCAACCT-T------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCTC---CAAGATTTTT--CTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTATTTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatcattggtggcttagatTAGGATTGAATA-ATGGAATTATTTTGTTCATCGAGAAA------------AA--T-GAAT-AT-----A-AAAACGAAGT-CACAAACT-TTTT-------A-----TGA---A-------GCATTCGCTTCCA----T--AAA---GTTT----GCGATTCG-TTTTTATAT-CATTTCTCGAT--GAGCAAAATATTCAATAT-T--TATA------T------------ATAAGTATTCAATGGGCT-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGTG-ACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATAC
gi|11 : attaAGAAATAAATA--T-AATA--CC--AT-TTTGCTCACGAA--AAA-T-GATAAACC-G----------A---ATCGC---A-------A-----ATTTTCA----CCAAAAAAAGTTT----GCGATTCAGTTTCTATATTCATTTCTTTGT--GAACAAAATA------GT-T--TATA------T------------AT------TCAATG--GTTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGTG-CCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAA
gi|12 : tattataaTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAATTAATA--T-AAAA--------------------ACCGAA-T-CACAAACT-TTTT-------T---AT-GA---AAGCATTCG-----GCTTCCA----T--AAA---GTTT----GCGATTTTGTTTTTATATTCATTTCTCGAT--GAACAAAATA------AT-T--CATA------TTTATATATAAGTAT------TCAATG--CTTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGTG-ACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCT-------------------TTCTCG--CTATTT-AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A--ATC-CACAAC--------T-CGGCAAGT------------CGTTTG--AA--A----------CT-TGCATCATTTTT-CAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTTGTTCGTCGAAAAGTGTATA--TGAAAA--TGGAAT-A--GC--A--AACT----T-TATGAA--------------A---GCCGA---A-------G-----GTTTTCA----TT-AAAAAA--TT----GCGATTCGGTATTCATACTTATTTCTCGAT--GAGAAAACTA------AT-T--TATA------C------------AT------Ttggtagggtaaac
gi|17 : GAA-T-CGCAAACT-TTTTTTTTATGA---ATTTA---AAGTCTTTG-----GCTTTCA----T--AAA---GTTT----GCGATTCA-TTTTTATATTCATTTCTCGAT--GAGGAAAATA------AT-T--TATC------T------------AT------TCAATA--C-CA------TA--TCAAAT-A
gi|18 : CGATTTTGTG-TAGCTTCCAAtt
gi|19 : a-----GCTTTAA----T--AAT---GTTT----GTGATTCGGTTTTCGTATTCACTTCTCGAT--GAACAGAATA------ATATAATATA------T------------GT------TCAA-A--CCTA------TAacataaaaacttgattaaagtttaaataattcagttgaaatttaatggccaatatcagattttactaaaacc
gi|2 : aaTAGAATTGAATATATG-AATTATTTTGCTCATCGAGAAATGAATA--T-AAAAA-CCGAAT---CGC--A-AAATT------TATGAA--------------A---GCCAA---A-------G-----GCTTTCA----T--TAAAAAGTTT----GTGATTCGTTTTCTACATTCATTTCTTAATAAGGGCAAAATA------AT-C--TATAGATATAT------------AT------TCAATG--CTTACACGTTTAATTCAATT-ACAAACTAAAAAC-----AATTTTCC-ATGAA--A----ATCGGAAAC----AT--TG------TGGA--------------TTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAATAA-CAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GTA----TATTT-AAAACTT----ATGGGTGCC--TGACAC----T-----T-TTGAGAC--TAGGC--------------C--G--G---TAGTATA-AAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTAT-ATTTCCTT--TTTCAAACAATATTGTG-TGTTT-------AT-GTAAAACCCTTAGGAG-TAACTTTA--AC---CC-AGCTGGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCC-ATGTTGTG-TTTTGTTTAGTATAGAGCTA------AACTGTC-GC--CT-GTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT-------------TTCC-ATTTCTTCGATCA--G-----------TTTTG---------------G-AAGACACGTA----TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCTCA--CTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC---T---CGGGACTTTT--CTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC--AC--------------TTCTCATCCT-A-CGTAATGTTT-
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAGtcaat
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTT
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC----------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTTTTT-------AT-GTAAAACTCTCAGTAGATA---TT---ACATCCCAA-CTGGTCAGTTATAGTATGATTATAC-C-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGA-TTTGTGTTTTCGTTTA--GTAGAGCTA------AACT----GCCACCTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG--C-TAATTTCC-ATTTCTTAGAGCAGGGTTTT--TTTTA-------TC--------ATAGAAAAACACGCA--CGTCACCA-ATATCATGCAGAGAAAGGATTTTCT-------------------TTCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATCT---CGAGATGTTT--CTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGC-------------------------------ATGT-CAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTAC------AAT-----------TTTAGTTTTGAATTTACTTCTATGATTTTG-T-AAGCTTTCAATAAGA
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCC--CGACCCAC----------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATGGGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--TTAGAGTTAA------ATTGCCGCCTA----TCCTGCAGATATCTT-AATT-CTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG--T-TAA-TTCCCATTTCTTTGAGCA--GTCTT--TTTTATTAT--------------TTG-AAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---A---TTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGCT---CGAGATTTTT--CTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCT-A-CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTATTTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : gaA--TTGTAT-ATCAT--A-GGATTGAA-TATATAAATTATTTT-------GTTCATCGAGAAA-------T-----GCTTTCA----T--AAAAAAGTTTAATTGCGATTCGGTTTTTATATTCATTTCTCAAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacgg----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT-----AATTCAGGT--TAGGCTCAATG---------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTATG-TGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--A------------------------ATGATTATACA--GAATGAAATTCTAAG-AA-AT----------TACCTTGA---------------------TTTA--TTAGAGCTAAT-TTCAAAT--CTGCCACCCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG--G-TAA-TTCC-ATTTCTTTCAGCA----CTT--TTTTTTTTTTTTTT--------ATTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctTAGGATTGAATATATA-AATCATTTTACTCATCGAGAAATAAGTA--T-AAAAACCTA----ATCGC--A-AACTT-------------T-TTTT-------A-----TGA---A-------A-----GCCTTCAGCCTT--CATAAAGTGT----GCTATTCGGTTTTTATAATCTTTTCTCGAT--GAGCAAAATA------AT-T--GATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGTG-CCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCC--CGACACA-----------------C--TGGGCTCAATGTTTTG---CCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTATtttttaag
gi|7 : attaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGGGTT-TCT-TTCC-ATTTCTTCAATCA-----TT--TTTTTTTTCATTAT---------TTG-AAGAC---------TTGC---ATA-----CA-----------TTCT-------------------ATCTCA--CTTTCA-AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCTT---TGA-ATTTTT--CTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCT--GAGTCAT-TTT-CAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACA---TT--TG-ACA-T-CG-TTTTGTTT-GATGTTG----CGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGTG-CCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCC--TGACACACAGTGATA-A-TTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 22222222222222222222222222222222222222222222222222222222222222222222222222222 1111111 111 111111 111111 22222222222222222222 111111 11 111111 11111 111 111 111111111 66666666666 55555555555555 111 1111111 1111 11 1111 2222222 111 3333333333333 111 111111 111 444444 22222222222 11111111 55555555555555555555555555555555 1111 1111 5555555555555555555 444444 11111 2222222222 3333333333 1 666666666666666666666666666 22222222222222222222 1
lowQualScore : 3 0 99 1 7 77777777777777777777777777777777777777777777777777777777777777777777777777777 0000000 111 8888 2 55 111111 4 777777 22222222222222222222 66 222222 4 1 5 4 55 4 8888 11 222222 2 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 1 111 3 1 000 0 5 555555555 77 44444444444 0 77 22222222222222 1 888 8888888 0 1 7777 8 77 1 0 0000 6666666 8 0 444 0000000000000 3 888 8 8 0 0 444444 8 222 555555 22222222222 88 0 3 0 8 0 1 1 6 2 1 99 3 99999999 6 55555555555555555555555555555555 8 0 9999 3 8 4444 1 1111111111111111111 99 3 777777 33 44444 1 0000000000 1 99 0 3 1 6 99 7 1111111111 3 3 2 333333333333333333333333333 3 5 5 1 1 6 6 6 00000000000000000000 0 1 0 7 0 8 0
lowQualScore : . . .. . . ............................................................................. ....... ... .... . .. ...... . ...... .................... .. ...... . . . . .. . .... .. ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . . ......... .. ........... . .. .............. . ... ....... . . .... . .. . . .... ....... . . ... ............. . ... . . . . ...... . ... ...... ........... .. . . . . . . . . . . .. . ........ . ................................ . . .... . . .... . ................... .. . ...... .. ..... . .......... . .. . . . . .. . .......... . . . ........................... . . . . . . . . .................... . . . . . . .
lowQualScore : 2 0 22 0 1 00000000000000000000000000000000000000000000000000000000000000000000000000000 5555555 888 5555 5 55 555555 0 000000 88888888888888888888 11 888888 4 1 0 4 55 0 5555 00 888888 6 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 0 777 2 5 000 1 7 333333333 99 66666666666 4 99 44444444444444 4 666 6666666 4 4 0000 0 66 0 8 8888 0000000 0 8 000 0000000000000 6 888 0 0 8 6 666666 0 000 444444 88888888888 88 8 8 8 0 8 0 4 7 5 5 22 2 88888888 7 88888888888888888888888888888888 0 8 2222 2 0 2222 0 7777777777777777777 22 5 555555 22 22222 0 8888888888 7 22 3 5 0 7 22 5 0000000000 2 7 0 777777777777777777777777777 9 7 7 0 7 7 7 7 66666666666666666666 8 0 5 0 8 0 8
consensus : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----ACCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TNAATAT-AAA----ACCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
gi|1 : AT-AAATGGCATTGAATCATTAT--A-GGATTGAATATATGAATTGTTTT-------GTTCATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT---------------------CAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCC--TGACACACA-CTGATAA-TCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTATTGT-TTT-------ATCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATAC-AAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTG-TTTCGTTTA--GTAGAGCTAATAT--AACTGCTGGCCACT-GT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGG--TACAA-TTCC-ATTT-TTCGAGCA--GTTTTTGTTTTGTTTTGTTTTTTTAAATCATTG-AAGA-ACGTA--CGTCACCA-GTAT----CAGAGAAAGGATCTTCT-------------------ATCTCAACCT-T------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCTC---CAAGATTTTT--CTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTATTTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatcattggtggcttagatttaTAGGATTGAATA-ATGGAATTATTTTGTTCATCGAGAAAAATGAATAT-AAA----AACGAA------------------GT-CACAAACT-TTTT-------A-----TGA---A-------GCATTCGCTTCCA----T--AAA---GTTT----GCGATTCG-TTTTTATAT-CATTTCTCGAT--GAGCAAAATATTCAATAT-T------TATAT------------ATAAGTATTCAATGGGCT-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATAC
gi|11 : attaAGAAA--TAAATAT-AAT----ACC--AT-TTTGCTCACGAA--AAAT-GATAAACC-G----------A---ATCGC---A-------A-----ATTTTCA----CCAAAAAAAGTTT----GCGATTCAGTTTCTATATTCATTTCTTTGT--GAACAAAATA------GT-T------TATAT------------AT------TCAATG--GTTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAA
gi|12 : tattataaTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TTAATAT-AAA----A------------------ACCGAAT-CACAAACT-TTTT-------T---AT-GA---AAGCATTCG-----GCTTCCA----T--AAA---GTTT----GCGATTTTGTTTTTATATTCATTTCTCGAT--GAACAAAATA------AT-T------CATATTTATATATAAGTAT------TCAATG--CTTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCT-------------------TTCTCG--CTATTT-AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A--ATC-CACAAC--------T-CGGCAAGT------------CGTTTG--AA--A----------CT-TGCATCATTTTT-CAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTTGTTCGTCGAAAAG--TGTATATGAAA----ATGGAAT-A--GC--A--AACT---T-TATGAA--------------A---GCCGA---A-------G-----GTTTTCA----TT-AAAAAA--TT----GCGATTCGGTATTCATACTTATTTCTCGAT--GAGAAAACTA------AT-T------TATAC------------AT------Ttggtagggtaaac
gi|17 : GAAT-CGCAAACT-TTTTTTTTATGA---ATTTA---AAGTCTTTG-----GCTTTCA----T--AAA---GTTT----GCGATTCA-TTTTTATATTCATTTCTCGAT--GAGGAAAATA------AT-T------TATCT------------AT------TCAATA--C-CA------TA--TCAAAT-A
gi|18 : CGATTTTGTG-TAGCTTCCAAtt
gi|19 : a-----GCTTTAA----T--AAT---GTTT----GTGATTCGGTTTTCGTATTCACTTCTCGAT--GAACAGAATA------ATATAA----TATAT------------GT------TCAA-A--CCTA------TAacataaaaacttgattaaagtttaaataattcagttgaaatttaatggccaatatcagattttactaaaacc
gi|2 : aaTAGAATTGAATATATG-AATTATTTTGCTCATCGAGAAA--TGAATATAAAA----ACCGA---ATCGC--A-AAAT----T-TATGAA--------------A---GCCAA---A-------G-----GCTTTCA----T--TAAAAAGTTT----GTGATTCGTTTTCTACATTCATTTCTTAATAAGGGCAAAATA------AT-CTATAGATATAT------------AT------TCAATG--CTTACACGTTTAATTCAATT-ACAAACTAAAAA-----CAATTTTCC-ATGAA--A----ATCGGAAAC----AT--T------GTGG--------------ATTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAAT-AACAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GT----ATATTT-AAAACTT----ATGGGTGCC--TGACAC----T-----T-TTGAGAC--TAGGC--------------C--G--G---TAGTATA-AAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTA-TATTTCCT--TTTTCAAACAATATTGT-GTGTTT-------AT-GTAAAACCCTTAGGAG-TAACTTTA--AC--CCA-G-CTGGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCC-ATGTTGTG-TTTTGTTTAGTATAGAGCTA------AACTGTC-GC--CT-GTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT-------------TTCC-ATTTCTTCGATCA--G-----------TTTTG---------------G-AAGACACGTA----TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCTCA--CTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC---T---CGGGACTTTT--CTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC--AC--------------TTCTCATCCT-A-CGTAATGTTT-
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAGtcaat
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTT
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC----------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTTTTT-------AT-GTAAAACTCTCAGTAGATA---TT---ACATCCCAA-CTGGTCAGTTATAGTATGATTATAC-C-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGA-TTTGTGTTTTCGTTTA--GTAGAGCTA------AACT----GCCACCTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG--C-TAATTTCC-ATTTCTTAGAGCAGGGTTTT--TTTTA-------TC--------ATAGAAAAACACGCA--CGTCACCA-ATATCATGCAGAGAAAGGATTTTCT-------------------TTCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATCT---CGAGATGTTT--CTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGC-------------------------------ATGT-CAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTAC------AAT-----------TTTAGTTTTGAATTTACTTCTATGATTTTG-T-AAGCTTTCAATAAGA
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCC--CGACCCAC----------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATGGGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--TTAGAGTTAA------ATTGCCGCCTA----TCCTGCAGATATCTT-AATT-CTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG--T-TAA-TTCCCATTTCTTTGAGCA--GTCTT--TTTTATTAT--------------TTG-AAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---A---TTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGCT---CGAGATTTTT--CTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCT-A-CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTATTTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : gaAT-ATCAT--A-GGATTGAATATATAAATTATTTT-------GTTCATCGAGAAA-------T-----GCTTTCA----T--AAAAAAGTTTAATTGCGATTCGGTTTTTATATTCATTTCTCAAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacggattgt----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT-----AATTCAGGT--TAGGCTCAATG---------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTATG-TGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--A------------------------ATGATTATACA--GAATGAAATTCTAAG-AA-AT----------TACCTTGA---------------------TTTA--TTAGAGCTAAT-TTCAAAT--CTGCCACCCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG--G-TAA-TTCC-ATTTCTTTCAGCA----CTT--TTTTTTTTTTTTTT--------ATTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctTAGGATTGAATATATA-AATCATTTTACTCATCGAGAAA--TAAGTATAAAA----ACCTA---ATCGC--A-AACTT------------T-TTTT-------A-----TGA---A-------A-----GCCTTCAGCCTT--CATAAAGTGT----GCTATTCGGTTTTTATAATCTTTTCTCGAT--GAGCAAAATA------AT-T------GATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGT-GCCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCC--CGACACA-----------------C--TGGGCTCAATGTTTTG---CCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTATtttttaag
gi|7 : attaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGGGTT-TCT-TTCC-ATTTCTTCAATCA-----TT--TTTTTTTTCATTAT---------TTG-AAGAC---------TTGC---ATA-----CA-----------TTCT-------------------ATCTCA--CTTTCA-AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCTT---TGA-ATTTTT--CTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCT--GAGTCAT-TTT-CAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACA---TT--TG-ACA-T-CG-TTTTGTTT-GATGTTG----CGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGT-GCCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCC--TGACACACAGTGATA-A-TTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 111 111111 111111 22222222222222222222 111111 11 111111 11111 111 111 111111111 66666666666 55555555555555 111 1111111 1111 11 1111 2222222 111 3333333333333 111 111111 111 444444 22222222222 11111111 55555555555555555555555555555555 1111 1111 5555555555555555555 444444 11111 2222222222 3333333333 1 666666666666666666666666666 22222222222222222222 1
lowQualScore : 3 0 99 1 222222222222222222222222222222222222222222222222222222222222222222222222222222 0000000 111 8888 2 55 111111 4 777777 22222222222222222222 66 222222 4 1 5 4 55 4 8888 11 222222 2 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 1 111 3 1 000 0 5 555555555 77 44444444444 0 77 22222222222222 1 888 8888888 0 1 7777 8 77 1 0 0000 6666666 8 0 444 0000000000000 3 888 8 8 0 0 444444 8 222 555555 22222222222 88 0 3 0 8 0 1 1 6 2 1 99 3 99999999 6 55555555555555555555555555555555 8 0 9999 3 8 4444 1 1111111111111111111 99 3 777777 33 44444 1 0000000000 1 99 0 3 1 6 99 7 1111111111 3 3 2 333333333333333333333333333 3 5 5 1 1 6 6 6 00000000000000000000 0 1 0 7 0 8 0
lowQualScore : . . .. . .............................................................................. ....... ... .... . .. ...... . ...... .................... .. ...... . . . . .. . .... .. ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . . ......... .. ........... . .. .............. . ... ....... . . .... . .. . . .... ....... . . ... ............. . ... . . . . ...... . ... ...... ........... .. . . . . . . . . . . .. . ........ . ................................ . . .... . . .... . ................... .. . ...... .. ..... . .......... . .. . . . . .. . .......... . . . ........................... . . . . . . . . .................... . . . . . . .
lowQualScore : 2 0 22 4 777777777777777777777777777777777777777777777777777777777777777777777777777777 5555555 888 5555 5 55 555555 0 000000 88888888888888888888 11 888888 4 1 0 4 55 0 5555 00 888888 6 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 0 777 2 5 000 1 7 333333333 99 66666666666 4 99 44444444444444 4 666 6666666 4 4 0000 0 66 0 8 8888 0000000 0 8 000 0000000000000 6 888 0 0 8 6 666666 0 000 444444 88888888888 88 8 8 8 0 8 0 4 7 5 5 22 2 88888888 7 88888888888888888888888888888888 0 8 2222 2 0 2222 0 7777777777777777777 22 5 555555 22 22222 0 8888888888 7 22 3 5 0 7 22 5 0000000000 2 7 0 777777777777777777777777777 9 7 7 0 7 7 7 7 66666666666666666666 8 0 5 0 8 0 8
consensus : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
gi|1 : AT-AAATGGCA-TTGAATCATTAT--A-GGATTGAATATATGAATTGTTTT-------GTTCATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT---------------------CAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCC--TGACACACA-CTGATAA-TCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTATTGT-TTT-------ATCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATAC-AAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTG-TTTCGTTTA--GTAGAGCTAATAT--AACTGCTGGCCACT-GT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGG--TACAA-TTCC-ATTT-TTCGAGCA--GTTTTTGTTTTGTTTTGTTTTTTTAAATCATTG-AAGA-ACGTA--CGTCACCA-GTAT----CAGAGAAAGGATCTTCT-------------------ATCTCAACCT-T------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCTC---CAAGATTTTT--CTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTATTTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatcattggtggcttagatttaTAGGATTGAATA-ATGGAATTATTTTGTTCATCGAGAAAAATGAATAT-AAA----A-ACGAA------------------GT-CACAAACT-TTTT-------A-----TGA---A-------GCATTCGCTTCCA----T--AAA---GTTT----GCGATTCG-TTTTTATAT-CATTTCTCGAT--GAGCAAAATATTCAATAT-T------TATAT------------ATAAGTATTCAATGGGCT-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATAC
gi|11 : attaAGAAA--TAAATAT-AAT----A-CC--AT-TTTGCTCACGAA--AAAT-GATAAACC-G----------A---ATCGC---A-------A-----ATTTTCA----CCAAAAAAAGTTT----GCGATTCAGTTTCTATATTCATTTCTTTGT--GAACAAAATA------GT-T------TATAT------------AT------TCAATG--GTTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAA
gi|12 : tattataaTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TTAATAT-AAA----A-------------------ACCGAAT-CACAAACT-TTTT-------T---AT-GA---AAGCATTCG-----GCTTCCA----T--AAA---GTTT----GCGATTTTGTTTTTATATTCATTTCTCGAT--GAACAAAATA------AT-T------CATATTTATATATAAGTAT------TCAATG--CTTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCT-------------------TTCTCG--CTATTT-AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A--ATC-CACAAC--------T-CGGCAAGT------------CGTTTG--AA--A----------CT-TGCATCATTTTT-CAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTTGTTCGTCGAAAAG--TGTATATGAAA----A-TGGAAT-A--GC--A--AACT---T-TATGAA--------------A---GCCGA---A-------G-----GTTTTCA----TT-AAAAAA--TT----GCGATTCGGTATTCATACTTATTTCTCGAT--GAGAAAACTA------AT-T------TATAC------------AT------Ttggtagggtaaac
gi|17 : GAAT-CGCAAACT-TTTTTTTTATGA---ATTTA---AAGTCTTTG-----GCTTTCA----T--AAA---GTTT----GCGATTCA-TTTTTATATTCATTTCTCGAT--GAGGAAAATA------AT-T------TATCT------------AT------TCAATA--C-CA------TA--TCAAAT-A
gi|18 : CGATTTTGTG-TAGCTTCCAAtt
gi|19 : a-----GCTTTAA----T--AAT---GTTT----GTGATTCGGTTTTCGTATTCACTTCTCGAT--GAACAGAATA------ATATAA----TATAT------------GT------TCAA-A--CCTA------TAacataaaaacttgattaaagtttaaataattcagttgaaatttaatggccaatatcagattttactaaaacc
gi|2 : aaTAGAATTGAATATATG-AATTATTTTGCTCATCGAGAAA--TGAATATAAAA----A-CCGA---ATCGC--A-AAAT----T-TATGAA--------------A---GCCAA---A-------G-----GCTTTCA----T--TAAAAAGTTT----GTGATTCGTTTTCTACATTCATTTCTTAATAAGGGCAAAATA------AT-CTATAGATATAT------------AT------TCAATG--CTTACACGTTTAATTCAATT-ACAAACTAAAAA-----CAATTTTCC-ATGAA--A----ATCGGAAAC----AT--T------GTGG--------------ATTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAAT-AACAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GT----ATATTT-AAAACTT----ATGGGTGCC--TGACAC----T-----T-TTGAGAC--TAGGC--------------C--G--G---TAGTATA-AAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTA-TATTTCCT--TTTTCAAACAATATTGT-GTGTTT-------AT-GTAAAACCCTTAGGAG-TAACTTTA--AC--CCA-G-CTGGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCC-ATGTTGTG-TTTTGTTTAGTATAGAGCTA------AACTGTC-GC--CT-GTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT-------------TTCC-ATTTCTTCGATCA--G-----------TTTTG---------------G-AAGACACGTA----TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCTCA--CTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC---T---CGGGACTTTT--CTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC--AC--------------TTCTCATCCT-A-CGTAATGTTT-
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAGtcaat
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTT
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC----------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTTTTT-------AT-GTAAAACTCTCAGTAGATA---TT---ACATCCCAA-CTGGTCAGTTATAGTATGATTATAC-C-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGA-TTTGTGTTTTCGTTTA--GTAGAGCTA------AACT----GCCACCTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG--C-TAATTTCC-ATTTCTTAGAGCAGGGTTTT--TTTTA-------TC--------ATAGAAAAACACGCA--CGTCACCA-ATATCATGCAGAGAAAGGATTTTCT-------------------TTCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATCT---CGAGATGTTT--CTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGC-------------------------------ATGT-CAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTAC------AAT-----------TTTAGTTTTGAATTTACTTCTATGATTTTG-T-AAGCTTTCAATAAGA
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCC--CGACCCAC----------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATGGGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--TTAGAGTTAA------ATTGCCGCCTA----TCCTGCAGATATCTT-AATT-CTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG--T-TAA-TTCCCATTTCTTTGAGCA--GTCTT--TTTTATTAT--------------TTG-AAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---A---TTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGCT---CGAGATTTTT--CTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCT-A-CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTATTTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : gaAT-ATCAT--A-GGATTGAATATATAAATTATTTT-------GTTCATCGAGAAA-------T-----GCTTTCA----T--AAAAAAGTTTAATTGCGATTCGGTTTTTATATTCATTTCTCAAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacggattgt----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT-----AATTCAGGT--TAGGCTCAATG---------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTATG-TGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--A------------------------ATGATTATACA--GAATGAAATTCTAAG-AA-AT----------TACCTTGA---------------------TTTA--TTAGAGCTAAT-TTCAAAT--CTGCCACCCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG--G-TAA-TTCC-ATTTCTTTCAGCA----CTT--TTTTTTTTTTTTTT--------ATTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctTAGGATTGAATATATA-AATCATTTTACTCATCGAGAAA--TAAGTAT-AAA----AACCTAAT---CGC--A-AACTT------------T-TTTT-------A-----TGA---A-------A-----GCCTTCAGCCTT--CATAAAGTGT----GCTATTCGGTTTTTATAATCTTTTCTCGAT--GAGCAAAATA------AT-T------GATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGT-GCCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCC--CGACACA-----------------C--TGGGCTCAATGTTTTG---CCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTATtttttaag
gi|7 : attaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGGGTT-TCT-TTCC-ATTTCTTCAATCA-----TT--TTTTTTTTCATTAT---------TTG-AAGAC---------TTGC---ATA-----CA-----------TTCT-------------------ATCTCA--CTTTCA-AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCTT---TGA-ATTTTT--CTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCT--GAGTCAT-TTT-CAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACA---TT--TG-ACA-T-CG-TTTTGTTT-GATGTTG----CGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGT-GCCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCC--TGACACACAGTGATA-A-TTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 111 111111 111111 22222222222222222222 111111 11 111111 11111 111 111 111111111 66666666666 55555555555555 111 1111111 1111 11 1111 2222222 111 3333333333333 111 111111 111 444444 22222222222 11111111 55555555555555555555555555555555 1111 1111 5555555555555555555 444444 11111 2222222222 3333333333 1 666666666666666666666666666 22222222222222222222 1
lowQualScore : 3 0 99 1 222222222222222222222222222222222222222222222222222222222222222222222222222222 0000000 111 8888 2 55 111111 4 777777 22222222222222222222 66 222222 4 1 5 4 55 4 8888 11 222222 2 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 1 111 3 1 000 0 5 555555555 77 44444444444 0 77 22222222222222 1 888 8888888 0 1 7777 8 77 1 0 0000 6666666 8 0 444 0000000000000 3 888 8 8 0 0 444444 8 222 555555 22222222222 88 0 3 0 8 0 1 1 6 2 1 99 3 99999999 6 55555555555555555555555555555555 8 0 9999 3 8 4444 1 1111111111111111111 99 3 777777 33 44444 1 0000000000 1 99 0 3 1 6 99 7 1111111111 3 3 2 333333333333333333333333333 3 5 5 1 1 6 6 6 00000000000000000000 0 1 0 7 0 8 0
lowQualScore : . . .. . .............................................................................. ....... ... .... . .. ...... . ...... .................... .. ...... . . . . .. . .... .. ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . . ......... .. ........... . .. .............. . ... ....... . . .... . .. . . .... ....... . . ... ............. . ... . . . . ...... . ... ...... ........... .. . . . . . . . . . . .. . ........ . ................................ . . .... . . .... . ................... .. . ...... .. ..... . .......... . .. . . . . .. . .......... . . . ........................... . . . . . . . . .................... . . . . . . .
lowQualScore : 2 0 22 4 777777777777777777777777777777777777777777777777777777777777777777777777777777 5555555 888 5555 5 55 555555 0 000000 88888888888888888888 11 888888 4 1 0 4 55 0 5555 00 888888 6 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 0 777 2 5 000 1 7 333333333 99 66666666666 4 99 44444444444444 4 666 6666666 4 4 0000 0 66 0 8 8888 0000000 0 8 000 0000000000000 6 888 0 0 8 6 666666 0 000 444444 88888888888 88 8 8 8 0 8 0 4 7 5 5 22 2 88888888 7 88888888888888888888888888888888 0 8 2222 2 0 2222 0 7777777777777777777 22 5 555555 22 22222 0 8888888888 7 22 3 5 0 7 22 5 0000000000 2 7 0 777777777777777777777777777 9 7 7 0 7 7 7 7 66666666666666666666 8 0 5 0 8 0 8
consensus : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
gi|1 : AT-AAATGGCA-TTGAATCATTAT--A-GGATTGAATATATGAATTGTTTT-------GTTCATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT---------------------CAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCC--TGACACACA-CTGATAA-TCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTATTGT-TTT-------ATCGTAAAACTCTTAGTAGATA---TTAATACATCTC-A-TTGGTCAATTATGGTATGATTATATAC-AAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTTTTTTG-TTTCGTTTA--GTAGAGCTAATAT--AACTGCTGGCCACT-GT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGG--TACAA-TTCC-ATTT-TTCGAGCA--GTTTTTGTTTTGTTTTGTTTTTTTAAATCATTG-AAGA-ACGTA--CGTCACCA-GTAT----CAGAGAAAGGATCTTCT-------------------ATCTCAACCT-T------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCTC---CAAGATTTTT--CTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG--A--TTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACA---TTGATG-AAA-TATA-TTTAGTTTTGATTTTATTTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatcattggtggcttagatttaTAGGATTGAATA-ATGGAATTATTTTGTTCATCGAGAAAAATGAATAT-AAA----A-ACGAA------------------GT-CACAAACT-TTTT-------A-----TGA---A-------GCATTCGCTTCCA----T--AAA---GTTT----GCGATTCG-TTTTTATAT-CATTTCTCGAT--GAGCAAAATATTCAATAT-T------TATAT------------ATAAGTATTCAATGGGCT-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATAC
gi|11 : attaAGAAA--TAAATAT-AAT----A-CC--AT-TTTGCTCACGAA--AAAT-GATAAACC-G----------A---ATCGC---A-------A-----ATTTTCA----CCAAAAAAAGTTT----GCGATTCAGTTTCTATATTCATTTCTTTGT--GAACAAAATA------GT-T------TATAT------------AT------TCAATG--GTTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGT-GCCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAA
gi|12 : tattataaTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TTAATAT-AAA----A-------------------ACCGAAT-CACAAACT-TTTT-------T---AT-GA---AAGCATTCG-----GCTTCCA----T--AAA---GTTT----GCGATTTTGTTTTTATATTCATTTCTCGAT--GAACAAAATA------AT-T------CATATTTATATATAAGTAT------TCAATG--CTTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGT-GACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCT-------------------TTCTCG--CTATTT-AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A--ATC-CACAAC--------T-CGGCAAGT------------CGTTTG--AA--A----------CT-TGCATCATTTTT-CAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTTGTTCGTCGAAAAG--TGTATATGAAA----A-TGGAAT-A--GC--A--AACT---T-TATGAA--------------A---GCCGA---A-------G-----GTTTTCA----TT-AAAAAA--TT----GCGATTCGGTATTCATACTTATTTCTCGAT--GAGAAAACTA------AT-T------TATAC------------AT------Ttggtagggtaaac
gi|17 : GAAT-CGCAAACT-TTTTTTTTATGA---ATTTA---AAGTCTTTG-----GCTTTCA----T--AAA---GTTT----GCGATTCA-TTTTTATATTCATTTCTCGAT--GAGGAAAATA------AT-T------TATCT------------AT------TCAATA--C-CA------TA--TCAAAT-A
gi|18 : CGATTTTGTG-TAGCTTCCAAtt
gi|19 : a-----GCTTTAA----T--AAT---GTTT----GTGATTCGGTTTTCGTATTCACTTCTCGAT--GAACAGAATA------ATATAA----TATAT------------GT------TCAA-A--CCTA------TAacataaaaacttgattaaagtttaaataattcagttgaaatttaatggccaatatcagattttactaaaacc
gi|2 : aaTAGAATTGAATATATG-AATTATTTTGCTCATCGAGAAA--TGAATATAAAA----A-CCGA---ATCGC--A-AAAT----T-TATGAA--------------A---GCCAA---A-------G-----GCTTTCA----T--TAAAAAGTTT----GTGATTCGTTTTCTACATTCATTTCTTAATAAGGGCAAAATA------AT-CTATAGATATAT------------AT------TCAATG--CTTACACGTTTAATTCAATT-ACAAACTAAAAA-----CAATTTTCC-ATGAA--A----ATCGGAAAC----AT--T------GTGG--------------ATTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAAT-AACAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GT----ATATTT-AAAACTT----ATGGGTGCC--TGACAC----T-----T-TTGAGAC--TAGGC--------------C--G--G---TAGTATA-AAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTA-TATTTCCT--TTTTCAAACAATATTGT-GTGTTT-------AT-GTAAAACCCTTAGGAG-TAACTTTA--AC--CCA-G-CTGGTCACTTATGGTATGGCTATATACAGAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGGCCC-ATGTTGTG-TTTTGTTTAGTATAGAGCTA------AACTGTC-GC--CT-GTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT-------------TTCC-ATTTCTTCGATCA--G-----------TTTTG---------------G-AAGACACGTA----TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCTCA--CTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC---T---CGGGACTTTT--CTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC--AC--------------TTCTCATCCT-A-CGTAATGTTT-
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAGtcaat
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAATTTTAATA-AAATTATA-T---GTTT
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC----------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTTTTT-------AT-GTAAAACTCTCAGTAGATA---TT---ACATCCCAA-CTGGTCAGTTATAGTATGATTATAC-C-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGTCCCGA-TTTGTGTTTTCGTTTA--GTAGAGCTA------AACT----GCCACCTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG--C-TAATTTCC-ATTTCTTAGAGCAGGGTTTT--TTTTA-------TC--------ATAGAAAAACACGCA--CGTCACCA-ATATCATGCAGAGAAAGGATTTTCT-------------------TTCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATCT---CGAGATGTTT--CTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGC-------------------------------ATGT-CAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTAC------AAT-----------TTTAGTTTTGAATTTACTTCTATGATTTTG-T-AAGCTTTCAATAAGA
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCC--CGACCCAC----------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTATA--AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATGGGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTA---CATCTC-AACTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--TTAGAGTTAA------ATTGCCGCCTA----TCCTGCAGATATCTT-AATT-CTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG--T-TAA-TTCCCATTTCTTTGAGCA--GTCTT--TTTTATTAT--------------TTG-AAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---A---TTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGCT---CGAGATTTTT--CTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG--T--TTCCCACCCT-A-CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACA---ATAATGAAAA-TATAGTTTAGTTTCGATTTTATTTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : gaAT-ATCAT--A-GGATTGAATATATAAATTATTTT-------GTTCATCGAGAAA-------T-----GCTTTCA----T--AAAAAAGTTTAATTGCGATTCGGTTTTTATATTCATTTCTCAAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacggattgt----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT-----AATTCAGGT--TAGGCTCAATG---------------ATCTAGTATA--AATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTATG-TGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--A------------------------ATGATTATACA--GAATGAAATTCTAAG-AA-AT----------TACCTTGA---------------------TTTA--TTAGAGCTAAT-TTCAAAT--CTGCCACCCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG--G-TAA-TTCC-ATTTCTTTCAGCA----CTT--TTTTTTTTTTTTTT--------ATTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctTAGGATTGAATATATA-AATCATTTTACTCATCGAGAAA--TAAGTAT-AAA----AACCTAAT---CGC--A-AACTT------------T-TTTT-------A-----TGA---A-------A-----GCCTTCAGCCTT--CATAAAGTGT----GCTATTCGGTTTTTATAATCTTTTCTCGAT--GAGCAAAATA------AT-T------GATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGT-GCCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCC--CGACACA-----------------C--TGGGCTCAATGTTTTG---CCGGTAGATCTAG--TATAAATAGAAG-------TGTACCTTATtttttaag
gi|7 : attaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGGGTT-TCT-TTCC-ATTTCTTCAATCA-----TT--TTTTTTTTCATTAT---------TTG-AAGAC---------TTGC---ATA-----CA-----------TTCT-------------------ATCTCA--CTTTCA-AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCTT---TGA-ATTTTT--CTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCT--GAGTCAT-TTT-CAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACA---TT--TG-ACA-T-CG-TTTTGTTT-GATGTTG----CGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGT-GCCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCC--TGACACACAGTGATA-A-TTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
blockSeqs : T . . G ACCATTTTGCTCACGAAAAATGATAAACCGAATCGCAA GCCTT AAA AATT G AA TTCAAT A TATAGA TTATATATAAGTAT GG CACGTT T C T G AT A CTAT AC TTCTGA T T T A T G A AATT C TAGC A AG ATACA C AGG T G AGA . AACTT CG CAGTGATAA TA GTTTTGGCTGT A ATA ACATGTA T . A AC A GTTT TTTTTAA . ACT ACATCCCAA C ACA C T ATGTT T GTA ATTTC CTGCCACCC A T T T A G G G CT T GTTTCT C CTTTTTTTTTTTTTTTTA A TACA T T CATG A ATCCCCGGCTTTTATCGAT . A AAAAAA CT ATTAA C TCATTTGGT G TT T A C TG G TT A T A GTTTGAGTCAGCTTATCATCCTG T . G C C T C T AATTTTAATAAAATTATA A T C .
blockSeqs : T . . A AACCGAATCACAAACTTTTTTATGAAAGCATTCG CCA AAA . G . . . AA ATAAGTAT . . . T . . . . . AC . A . . A A . A . . . G . T C . T A . . TGTGC . CAGTAA . GTTTTGCCGGT A AA . T . . TT T GGGG . . . ACATCTCAA G C . . GATTT . G A GCCGCCTA A T . A T C G A . T CTAAT . TTTTTTTTTTCATTAT . CG C . . C . . A TTAAA TG ATTAA T ATTTCTT A . A C . . A TG A T A ACTTGTTGGTTTCCCACCCTA G . T C T . . . AATAATGAAAATATAG A C T .
blockSeqs : T . . . AACGAAGTCACAAACTTTTTATGAAGCATTC TT AAA . G . . . . AT . . . C . . . . . . . T . . A T . A . . . C . T G . T A . . T . TT . TTTTGTCTCT A TT . T . . A A GTG . . . AACCCAG A A . . GATTT . T . GTCGCCT A C . T T C G A . T TTAA . GGGTTTTTTTTATCA . . C . . T . . A CAAAA TG GTT G ATATCT A . A T . . T T A A G GTTTGAAACTTG A . T C T . . . ATTTGACATCG T . . .
blockSeqs : . . ATGGAATAGCAAACTTTATGAAAGCCGAAG T AAA . G . . . . AT . . . T . . . . . . . A . . T A . A . . . T . T C . . . . . T . C . CG A TA . A . . . . GTG . . . AA . A . . . . T . GCCACCT . . . . C A T C . T GTAA . GTCTTTTTTATTAT . . . . . C . . A A TG AA G TAAGCT A . A C . . C T C A . TTCTCATCCTA A . C T T . . . AAT . .
blockSeqs : . . ACCGAATCGCAAAATTTATGAAAGCCAAAG T AAA . T . . . . AT . . . T . . . . . . . A . . G A . G . . . G . A G . . . . . T . C . GT . A . . . . . . . . GTTTTG . . . . T . C . C TCT . . . A . . . T . . . GC A . . . T . . .
blockSeqs : . AACCTAATCGCAAACTTTTTTTATGAAA T . . G . . . . GT . . . C . . . . . . . A . . G A . G . . . T . T . . T . . . G . A . . .
blockSeqs : T . . G . . . . AT . . . . . . . . . . . C . . T A . . . . . C .
blockSeqs : T . . . . . . . AT . . . . . . . . . . . . T . . . .
blockSeqs : T . . . . . . . AT . . . .
blockSeqCons : ** AT****************** CAGTA****** GTTTTGCGT***** TA* **** GTG* AACCCAA****** A** GATTT* A***** GCCGCCT**** A* NTAA**** NTTTTTTTTATTAT****************** CG** ** AAA*** T********* GCTTGGGCTTCCCACCCTA******** AATTGACAT***********
originalCons : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATAT------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T-----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTATATAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGGTGTTT-------AT-GTAAAACTCTTAGTAGATA---TTA--ACATCCC-A-CTGGTCAATTATGGTATGATTATACAC-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTTTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AACTGCCGGCCACC-GTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG--T-TAA-TTCC-ATTTCTTCGAGCA--GTCTT--TTTTNTTTTGTTTT--------ATTG-AAGACACGTA--CGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG--A--TTCCCATCCT-AGCGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACA---TTAATG-AAA-TATA-TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
finalCons : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T------TATATAT------------------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGT-GCCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGTA------TTCAGGC--TAGGCTCAATGTTTTGCGT-----AGATCTAGTATTA-AATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATGTG-TTT-------AT-GTAAAACTCTTAGTAGATA---TTAACCCAA------CTGGTCAATTATGGTATGATTATACA--GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGTCCCGATTT-GTG-TTTCGTTTA--NTAGAGCTAA-----AACTGCCGCCT----GTCCTGCAGATATCTGA-ATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGGNTAA----TTCC-ATTTCTTCGAGCANTTTTTTTTATTAT------------------TTG-AAGACACGTACG--TCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTATAAA---ATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAACT---------CGGCAATTACATTTAGCGGACGCTTGGGCTTCCCACCCTA--------CGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACAATTGACAT-----------TTTAGTTTCGATTTTATTTCTGCGATTTTGTT-TAGCTTCCAACAAGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 111 111111 222222222222222222222222222 111111 11 111111 11111 111 111 111111111 5555555555 55555555555555 11 1111111 1111 1111 333333 11 111 333333333333 11 111 4444444 11 1111 22222222 111 33333333333333333 111111 1111 5555555555555555555 555555 11111 2222222222 3333333333 1 6666666666666666666666666 5555555555555555 1
lowQualScore : 3 0 99 5 777777777777777777777777777777777777777777777777777777777777777777777777777777 0000000 111 8888 2 55 111111 4 55 666666666666666666666666666 66 222222 4 4 5 4 55 4 8888 11 0 222222 2 4 4 0 1 2 5 3 9999 4 9999 1 0 0 66 0 44444 1 111 3 1 000 5 555555555 77 6666666666 0 77 22222222222222 44 8888888 0 1 7777 8 4444 0 8 111111 11 8 0 444 777777777777 3 11 8 8 8 0 88 9999 8 222 5555555 8 8 11 5555 0 8 0 1 1 6 2 1 99 3 11111111 6 000 99 77777777777777777 99 0 333333 3 8 4444 1 1111111111111111111 99 3 111111 33 44444 1 0000000000 1 99 0 3 1 6 99 7 1111111111 3 2 2 3333333333333333333333333 3 5 5 1 1 6 6 6 5555555555555555 3 2 3 0 0 8 0
lowQualScore : . . .. . .............................................................................. ....... ... .... . .. ...... . .. ........................... .. ...... . . . . .. . .... .. . ...... . . . . . . . . .... . .... . . . .. . ..... . ... . . ... . ......... .. .......... . .. .............. .. ....... . . .... . .... . . ...... .. . . ... ............ . .. . . . . .. .... . ... ....... . . .. .... . . . . . . . . .. . ........ . ... .. ................. .. . ...... . . .... . ................... .. . ...... .. ..... . .......... . .. . . . . .. . .......... . . . ......................... . . . . . . . . ................ . . . . . . .
lowQualScore : 2 0 22 7 777777777777777777777777777777777777777777777777777777777777777777777777777777 5555555 888 5555 5 55 555555 0 55 888888888888888888888888888 11 888888 4 2 0 4 55 0 5555 00 7 888888 6 4 4 1 0 3 0 1 4444 4 4444 0 1 2 99 3 11111 0 777 2 5 000 7 333333333 99 7777777777 4 99 44444444444444 44 6666666 4 4 0000 0 4444 8 0 000000 00 0 8 000 222222222222 6 00 0 0 0 8 66 8888 0 000 4444444 0 0 00 6666 8 0 8 0 4 7 5 5 22 2 77777777 7 222 22 77777777777777777 22 8 888888 2 0 2222 0 7777777777777777777 22 5 555555 22 22222 0 8888888888 7 22 3 5 0 7 22 5 0000000000 2 0 2 2222222222222222222222222 9 7 7 0 7 7 7 7 3333333333333333 2 0 2 0 8 0 8
consensus : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT--TCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACA-T----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTAT-TAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATG-TG------TTTA--T-GTAAAACTCTTAGTAGATA---TTACA-CC-CA----ACTGGTCAATTATGGTATGATTATA--CA-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGT-CCCGAT-TTGTG-TTTCGTTTA--NTAGAGCTAAT-T--AA-CTGCC-GC--CTGTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG-NT--AA-TT-CCATTTCTTCGAGCA--GTTTT--TTTT--ATT------------AT--TTGAAGACACG--TACGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--AG----CTTCCCATCCTA--CGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACANT-ATG---ANATA--TTTAGTTTTGATTTTAT-TTCTGCGATTTTGTT-TAGCTTCCAACAAGA
Reference ( family-405 ) : NNNNNNNNNNNNNNNNNNTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TGAATAT-AAA----A-CCGAAT-ATCGC--A-GAATTGAAT-CACGAACT-TTTT-------A---ATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCGAAATAGA------AATANACATTT-ACGAACAGC-TGTAGATCTGCGGAGTAATNTACACGCATGGTG-CCGTCGGCAGA----AATTAAC-AGC----AANTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAACAAAATTGTNAATCAGACTCGAATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT----A-TTCAGGC--TAGGCTCAATGTTTTG---C--GTAGATCTAGTAT-TAAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTATTATTTATTTATTTTTAATCAAAATTATG-TG------TTTA--T-GTAAAACTCTTAGTAGATA---TTA-A-CC-CA----ACTGGTCAATTATGGTATGATTATA--CA-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGT-CCCGAT-TTGTG-TTTCGTTTA--NTAGAGCTAA-----AA-CTGCC-GC--CTGTCCTGCAGATATCTG-AATTTCTTTTCTTA-TGTTTTTAATCGCTTTGGGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTCGG-NT--AA-TT-CCATTTCTTCGAGCA--NTTTT--TTTT--ATT------------AT--TTGAAGACACG--TACGTCACCA-ATAT----CAGAGAAAGGATCTTCT-------------------ATCTCA--CTAT---AAAATTTGTTCGTCGACTTATTAACTTTCAAATAATNA-TCGCTT---CGAGATTTTT--CTTCCATTTTTAATTTTACAGTCAA-A--TTCNCATAAC--------T-CGGCAATTACATTTAGCGGACGCTTG--GG----CTTCCCACCCTA--CGTCATATTT-CAGTTTAGAGTTATCTCCCTTTCC-T-A-TTTGTACAAT--TG---ACAT---TTTAGTTTCGATTTTAT-TTCTGCGATTTTGTT-TAGCTTCCAACAAGA
gi|1 : AT-AAATGGCA-TTGAATCATTAT--A-GGATTGAATATATGAATTGTTTT-------GTTCATCGA---A-------G-----GCTTTCA----T--AAAAAAGTTT----GCGATTCGGTTTTTATATTCATTTCTCGAT--GAGCAAAATA------AT-T--TATA------T---------------------CAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTGT-CAATTTTCC-ATGAA--A-TTTATCAGCAAT----AC--TACTGAAATAGA------AATACACATGC-ACATACAGC-TGTAGATCTGCAGAATAATTTACACGCTTGGTG-CCGTCAGCAGA----AATTAAC-AGC----AAGCGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAA-A---TGTACATCAATAAACAAAATCGTGAATTAGACTCGGATTTGGGGCTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TCATGAACATATTTCAG----T----ATGGGTGCC--TGACACACACTGATAA-TCCAGGC--TAGGCTCAATGTTTTG---CCGGTAGATCTAGTATATAAATAAAAT-------TGTACTTTAATCCATTCGCTAGTTTTTTAAAATAACTAC-TTGTTATTTATTTATTTTTAATCAAAATTAT--TGT-----TTTA--TCGTAAAACTCTTAGTAGATA---TTA-A-TA-CATCTCATTGGTCAATTATGGTATGATTATA--TACAAATGAAATTCTAA--AA-ATTACCTTGAATTATTTTGACGTACCAGTT-TTTTG-TTTCGTTTA--GTAGAGCTAATAT--AA-CTGCTGGCCACTGT-CTGCAGATATCTGAAATTTTTTTTCTTA-TGTTTTTAATCG-TCTGGGTA--CAGTCATAGCATATTCAGAATTTGATC--TTC-CGGTAC--AA-TT-CCATTT-TTCGAGCA--GTTTTTGTTTT--GTTTTGTTTTTTTAAATCATTGAAGA-ACG--TACGTCACCA-GTAT----CAGAGAAAGGATCTTCT-------------------ATCTCAACCT-T------ATTTGTTCGTTG-CTTATTAACTTTCAAATAATTA-TCGCTC---CAAGATTTTT--CTCCCATTTCTAATTATCAAGTCAA-A--TACACTTAACGGCCTTAAC-CGGCAATTACATTTAGCCGACACATG--AG----ATTTCCATCCTAAGCGTCATAGTTACAGTTTA-AGTTATCTCCCTT--C-T-A-TTTGTACATTGATG---AAATATATTTAGTTTTGATTTTAT-TTCTGCAATTTTGTTCTAGCTTCC-ACAAGA
gi|10 : aagttggggttttttttcaataggattcattatcattggtggcttagatttaTAGGATTGAATA-ATGGAATTATTTTGTTCATCGAGAAAAATGAATAT-AAA----A-ACGAA------------------GT-CACAAACT-TTTT-------A-----TGA---A-------GCATTCGCTTCCA----T--AAA---GTTT----GCGATTCG-TTTTTATAT-CATTTCTCGAT--GAGCAAAATATTCAATAT-T--TATA------T------------ATAAGTATTCAATGGGCT-A------TAATTCAATT-TCAAACTATAAACCGTTCAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTTTACGAACAGCTTGTAGATCTGCGGA-CAATATACATGCTTGGTG-ACGTCAGCAGA----AATTAAC-AGC----AAATGC-GCTGCTATTG-TTACTACAAAGAATAC
gi|11 : attaAGAAA--TAAATAT-AAT----A-CC--AT-TTTGCTCACGAA--AAAT-GATAAACC-G----------A---ATCGC---A-------A-----ATTTTCA----CCAAAAAAAGTTT----GCGATTCAGTTTCTATATTCATTTCTTTGT--GAACAAAATA------GT-T--TATA------T------------AT------TCAATG--GTTA------TAATTCAATT-ACGAACTATAAACTGT-CATTGTTTA-ATG------TTTATCAGCAACCTATAT--TAACGAAATAGA------AATAAACATGT-ACGAACAGC-TGTAGACCTGCGGAGAAATATACACGCATGGTG-CCGTCAGCAGA----AATTAAC-AGC----AAGTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTACATCAATAAATAAAA
gi|12 : tattataaTAGGATTGAATATATG-AATTATTTTGTTCATCGAGAAA--TTAATAT-AAA----A-------------------ACCGAAT-CACAAACT-TTTT-------T---AT-GA---AAGCATTCG-----GCTTCCA----T--AAA---GTTT----GCGATTTTGTTTTTATATTCATTTCTCGAT--GAACAAAATA------AT-T--CATA------TTTATATATAAGTAT------TCAATG--CTTA------TAATTCAATT-TCAAACTATAAACCGT-CAACTTTCC-ATGAA--A-CTTATCAGCAAC----ACACTATCGAAATAGA------AATATATATTT-ACGAACAGC-TGTAGATCTGCGGACTAATATACATGCTTGGTG-ACGTCAGCAGA----AATTAAC-AGC----
gi|13 : attaTAT----CAGAGAAAAGACATTCT-------------------TTCTCG--CTATTT-AAAATTTGTACGTCTATTT-----CTTTAAAATAGTCA-TCATTTGGTCG-GATTTTTTTCTTCCGTTTTTAATTCCACTGTAAA-A--ATC-CACAAC--------T-CGGCAAGT-CGTTT----GAAACTTG----------------------CATCATTTTT-CAA-TTAGAGTTATCTCCCTTCCCTT-A-TATGTA
gi|16 : tttatcagaagaagaaccaattggccTTGTTCGTCGAAAAG--TGTATATGAAA----A-TGGAAT-A--GC--A--AACT---T-TATGAA--------------A---GCCGA---A-------G-----GTTTTCA----TT-AAAAAA--TT----GCGATTCGGTATTCATACTTATTTCTCGAT--GAGAAAACTA------AT-T--TATA------C------------AT------Ttggtagggtaaac
gi|17 : GAAT-CGCAAACT-TTTTTTTTATGA---ATTTA---AAGTCTTTG-----GCTTTCA----T--AAA---GTTT----GCGATTCA-TTTTTATATTCATTTCTCGAT--GAGGAAAATA------AT-T--TATC------T------------AT------TCAATA--C-CA------TA--TCAAAT-A
gi|18 : CGATTTTGTG-TAGCTTCCAAtt
gi|19 : a-----GCTTTAA----T--AAT---GTTT----GTGATTCGGTTTTCGTATTCACTTCTCGAT--GAACAGAATA------ATATAATATA------T------------GT------TCAA-A--CCTA------TAacataaaaacttgattaaagtttaaataattcagttgaaatttaatggccaatatcagattttactaaaacc
gi|2 : aaTAGAATTGAATATATG-AATTATTTTGCTCATCGAGAAA--TGAATAT-AAA----AACCGAAT---CGC--A-AAATT-----TATGAA--------------A---GCCAA---A-------G-----GCTTTCA----T--TAAAAAGTTT----GTGATTCGTTTTCTACATTCATTTCTTAATAAGGGCAAAATA------AT-C--TATAGATATAT------------AT------TCAATG--CTTACACGTTTAATTCAATT-ACAAACTAAAAAC-----AATTTTCC-ATGAA--A----ATCGGAAAC----AT--TG------TGGA--------------TTT-GCAAACAGC-TGCATATCCGCGGAGTAATTTACACGCATGTTGGCCATCAACAGA----AATTAAC-ACC------CTG-----------GTTTACTACAA--GGCCATCAGCTTAGGAC-T---TGTACATCAATAA-CAAAATTGCCAATCAGACTCGAATTTGGGGCTAAAGAAACGCTCGCC---GCTTGCTGGTCAA---T-GTA----TATTT-AAAACTT----ATGGGTGCC--TGACAC----T----T-TTGAGAC--TAGGC--------------C--G--G---TAGTAT-AAAA-AACATACATGTATGTACATTATTCTATTCGCTTGTTGT----AATAACTACATTAT-ATTTCCTT--TTTCAAACAATATTGTG-TG------TTTA--T-GTAAAACCCTTAGGAG-TAACTTTA-A-CC-CA----GCTGGTCACTTATGGTATGGCTATATACA-GAGTGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGG-CCC-ATGTTGTG-TTTTGTTTAGTATAGAGCT-A-----AA-CTGTC-GC--CTGTCCTGCAGATATTTG--ATTTCTTTTGTTGTTGTTTTTCATAGCTTTGGGTCCTCAAT-ACAGTATTTTCAGAATT-------CT-------------TT-CCATTTCTTCGATCA--GTT--------------------------T--TGGAAGACACG--TA--TTACTATACGT----CAGAGAAAGGATCTTTTATCCCCGGCTTTTATCGATATCTCA--CTATAAAAAAACATGTTCGTTGACTTA--A----TCAA-----TA-TC---T---CGGGACTTTT--CTTCCATATTTAATTTTACAGTCAA-A--TTCGCATAACT-------T-CAGCAATTACATTTAGC------------A----CTTCTCATCCTA--CGTAATGTTT-
gi|20 : aagtttcacatttacacgaagtttacaatttcttttttcattaGAA--A-TGTATCAGCAAC----AT--TACTGAAATAGA------AATAAACATTT-ACACACAGC-TGTAGATCTGTGGAGTAATGTACACGCATAGtcaat
gi|21 : CATAGGT-CAGGTTAGAGTTATCT-CCTTTCT-T-ATTTTGTACAAT--T
gi|3 : CAATTTACAAACTATAAACTGT-AATTTTTCC-ATGAA--A-TTTATCAGCAAC----AC--TACCAAAATAGATTCTGAAATAAACATTT-ACGAACAGT-TGTAGATCTGCGGAGTAATGTACA--------------------------ATT--C-A-T----AATTGCAGTTGCTATTGTTTACTACAA--GATACTGAGTTTAGGAC-T---TGTATTTAAATAAACACAATTGTCAAGCAGACTAGAAATTGGGGCTAAAGAAATGCTTGTC---GCTTGTTGATTGCAGATCGTAGACATATTT-AG----T----GTGGGTGCCCGCGACGCAC---------TTCAGACTATAGGCTCAATGTTTTGGC-T--GTAGACATAATAT-TTAATAAAAT-------TGTACCTCATTCCATTCACTTGTTTT----AATAACTA---TACTTTTTATTTATTTTTAATCAAATTTATGTTT------TTTA--T-GTAAAACTCTCAGTAGATA---TTACATCC-CA----ACTGGTCAGTTATAGTATGATTATA--CC-GAATGAAATTCTAAGCAATATTACCTTGGATTATTTTGACGT-CCCGAT-TTGTGTTTTCGTTTA--GTAGAGCT-A-----AA-CTGCC-AC--CTGTCTTGCATATATCTG-AA-TTCTTTTC----TG---TTAATTGCTTTGGATCCTCAATGATAGTATTTTCAGAATTTGGTC--CTCTCAG-CT--AATTT-CCATTTCTTAGAGCAGGGTTTT--TTTT--ATC------------AT--AGAAAAACACG--CACGTCACCA-ATATCATGCAGAGAAAGGATTTTCT-------------------TTCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-ATATCT---CGAGATGTTT--CTTCCATTTTTAATTTTACAGTTAT-ATGTTCACATAAC--------T-CGGCAATTACATTTAGCAGACGC-------------------------------ATGT-CAGTTCAGAGTTATCTCCCTTTCT-T-A-TTTGTACA-----------AT---TTTAGTTTTGAATTTAC-TTCTATGATTTTG-T-AAGCTTTCAATAAGAttaataaaattatatgttt
gi|4 : ---TCGTAGACATATTT-AA----T----GTGGGTGCC--CGACCCAC---------TGCAGAT--TAGGCTCAATGT------------AAATCTAGTAT--AAATAAAAT-------TGTACCTTATTCCATTCGCTTGTTTT----AATAACTAC-TTTTTATTTATTTATTCTTAATCAAAATTATG-GGGTTTTTTTTAAAT-GTAAAACTCTCAGTAGATA---TTACA-TCTCA----ACTGGTCAATTATGGTATGATTATA--CA-GAATGAAATTCTAAG-AA-ATTACCTTGAATTATTTTGACGT-CCCGAT-TTGTG-TTTCGTTTA--TTAGAGTT-A-----AA-TTGCC-GC--CTATCCTGCAGATATCTT-AA-TTCTTTTCTTA-TGTTAATAATTGCTTTGAGTCCTCAATCATAGTATTTTCAGAATTTGATC--CTCTTGG-TT--AA-TTCCCATTTCTTTGAGCA--GTCTT--TTTT--ATT------------AT--TTGAAGACACGTATACATCACCA-ATGT----CGGAGAAAGGATCTTCT-------------------ATCTCA--CTAT------ATTTGTTCGTTGACTTATTAACTTTCAAATAATGA-TAAGCT---CGAGATTTTT--CTTCCATTTCTAATTTTACAGTCAC-A--TTCTCATAAC--------T-CGGCAATTACAATTAGAAGACACTTGTTGG----TTTCCCACCCTA--CGTCACATTT-CAGTTTAGAGTTATCTCCCTTTCT-T-A-TTTGTACAATAATGAAAATATAG-TTTAGTTTCGATTTTAT-TTCTGTGATTTTGTT-TAGCTTCCAACAAGAtacaatcttgattaaatagcgtaagtagttcagtttagtagatttctcttatcttattttgaata
gi|5 : gaAT-ATCAT--A-GGATTGAATATATAAATTATTTT-------GTTCATCGAGAAA-------T-----GCTTTCA----T--AAAAAAGTTTAATTGCGATTCGGTTTTTATATTCATTTCTCAAT--GAGCAAAATA------AT-T--TATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAACTATAAGCTCT-CAATTTCCC-ATGAAATA-TTTATCAGCAAT----AC--TACCtaaaaacttaattaaacaatgtcagtaatttagttaaaattcaatttttaaaacctgctatttggaatatgtctacgcaaatgctcggaaaaaaaaaccaataattttttttatgtataacagtatatcagtatat
gi|5 : atcactgtagatgacctgaccgacggattgt----AATTAAC-AGCTAGCAAGTGCAGTTGCTACTGTTTA---------------------GGAC-A---TGTACATCAATAAACAAAATTGTGAATTAGACTCGAATTTGGGGCTAAAGAA----------------------TGT---TCGTAGACATATTT-AG----T----ATGGGTGCC--CGACACACAGT----AATTCAGGT--TAGGCTCAATG---------------ATCTAGTAT--AAATAAAAT-------TGTACTTTATTTCATTCGCTAGTTTT----AATAACTAC-TT----TTTATTTATTTTTAATCAAAATTATG-TG------TTTA--T-GTAAAACTCTTAGTAGATA---TTA-A--------------------------ATGATTATA--CA-GAATGAAATTCTAAG-AA-ATTACC----------TTGA----------------------TTTA--TTAGAGCTAATTTCAAATCTGCC-AC--CCGTCCTGCAGATATCTG-ATTTCTTTTTTTTA-TGTTTTTAATCGCTTTGGGTCCTCAGTCATA----TTTCAGAATTTGATCCTCTCTCGG-GT--AA-TT-CCATTTCTTTCAGCA--CTTTT--TTTT--TTT------------TT--TTctaattaacagctagcaagtgcagttgctactgtttaggacatgtacatcaataaacaaaattgtgaattagactcgaatttggggctaaagaatgttcgtagacatatttagtatgggtgcccgacacacagtaattcaggttaggctcaatgatctagtataaataaaattgtactttatttcattcgctagttttaataactactttttatttatttttaatcaaaattatgtgtttatgtaaaactcttagtagatattaaatgattatacagaatgaaattctaagaaattaccttgatttattagagctaatttcaaatctgccacccgtcctgcagatatctgatttcttttttttatgtttttaatcgctttgggtcctcagtcatatttcagaatttgatcctctctcgggtaattccatttctttcagcacttttttttttttttttatttttttaag
gi|6 : atcactgtagatgacctgaccgacggattgtatatcataggattgaatatataaattattttgttcatcgagaaatgctttcataaaaaagtttaattgcgattcggtttttatattcatttctcaatgagcaaaataatttatatattcaatgcttataattcaattacaaactataagctctcaatttcccatgaaatatttatcagcaatactaccctTAGGATTGAATATATA-AATCATTTTACTCATCGAGAAA--TAAGTAT-AAA----AACCTAAT---CGC--A-AACTT------------T-TTTT-------A-----TGA---A-------A-----GCCTTCAGCCTT--CATAAAGTGT----GCTATTCGGTTTTTATAATCTTTTCTCGAT--GAGCAAAATA------AT-T--GATA------T------------AT------TCAATG--CTTA------TAATTCAATT-ACAAATTATAAACCGT-CAATTTTCC-ATGAA--A-TTTATCAGTAAC----AC--TACAGAAATAGA------AATAAACATTT-ACGAACAGC-TGCAGATCTCTTGAGTGATTTACACGCATGGTG-CCGTCGGCAGAAATTAATTAAC-AGC----AATTGCA---------GTTTATCACAA--GATACTGAGATTAGGAC-T---TGTACATCAATAAACAAAATTGTCAATCAGACTCCCATTT-GGGCTAAATAAACGCTTCTTAGGACTTGT---TTGT---TCGTAGACATATTT-AG----TGTGCATGTGTGCC--CGACACA----------------C--TGGGCTCAATGTTTTG---CCGGTAGATCTAGTA--TAAATAGAAG-------TGTACCTTATtatttttttaag
gi|7 : attaCTTTGGACCCTCAATAATTTTTTTTTCAGAATTTGCTT--CTCTCGG-GTTTCT-TT-CCATTTCTTCAATCA--TTTTT--TTTTTCATT------------AT--TTGAAGAC---------TTGC---ATA-----CA-----------TTCT-------------------ATCTCA--CTTTCA-AAAATCTGTATGTC-AC--GTT--CTTTCAAATAATCAATTTCTT---TGA-ATTTTT--CTTCCATGTTT----CTAC--TAAACA--TTCCCATA-C--------TGCGGTAAGTCCAATTAGCGGACGTTTG--AGTCAGCTTATCATCCTG--AGTCAT-TTT-CAACTTAGAGTTATCTTCCTTTCC-TCA-TTTGTACATT--TG---ACAT---C---GTTTTG-TTTGATGTTGCGCAATTCTGTT-CGTTTTGAAACAAGAa
gi|9 : aAATTTTCCGATGAA--AATTTATCAGCAAT----AC--TACCAAAATAAA------AATACACATT--ACAAACAGC-TGTAGATCTGCGGAGT---TTACACACATGGTG-CCGTCGACAGA----AAATAACCAG-----AACTGCAGTTGCTACTGTTTACTACAA--GATACTGAGTTTAGAACATACATGTACATCAATAAACAAAATTGTGAATTAGAGCCGAATTTGGGACTAAAGAAACGCTTGTC---GCTTGTTGATTGT---TTGTAGACATATTT-AG----T----ATGGATGCC--TGACACACAGTGATAA-TTCAGGC--TAGGCTTAAT-TTTTGTCTC---TAGATCTGGT-T-TAAAT-AAAT-------CTTACTTTATTCCATTCGCtgacattttgtttatattcatttcaaatttgagagtaactgtaatattttctatgaagctgtctaaggaaatacacgaaaaacaaatacatgtaatacacttctcatttagaagtggatcaagtgtatat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGATTAAATAGTGTAATTAATTCGGTTGAAATTTAATGGCAAATATAAGATTTTTCTAAAACCTGCTATTTGGAAGTTGTCTATGCAAATACTCGAAAAAACAAACGACACGTTTTATATGTATAACAGTATATACATGTATATACAAAGCGATTGTACACATTTTTAAAATTGTGATACATTTAGTAAACAAATGTAACTGCACAAAGGTTACTGTACAAACGGTAAGACTTGAGAAAGTAGTTCTACTAAGTCAAAAGTTACATTTTGACATTGGGAAATGAATAAAATAATGTGTCCCATAGGATGCTATTGTAAATGTAGAATGAAAGAAGAAATAATTGAATTATATA
Unaligned ( gi|14 ): AAACGTATGTATCTTCTCAAAGGTTGTTGCAAAATCGGTAAGCCTTGTGAAAATAGTTCTGCTAATTCACAAGTTACATTCATTGGGAAATAAATAAAAGAAAGTGCCCAATAGGATGCTATAGTAAATGAATCTCTAATGAATGAAGAAATAATTGAATTAC
Unaligned ( gi|15 ): CACAATGGTTACTGCACCAATAGTAGCATCTGTGAAAGTACATATAGTATTCTACAAACTTAGAAGTTATTCTCAATGGGAAGTGAATGAAAGAAAAGTATCCCATTGGATGCAATTGTGAATGTAGAATGAATGAAGAAATAATAAAATTA
Unaligned ( gi|22 ): GAAAATAGTTCTGCTAAATTCAAAAATTACATTCATTGGGGGAATTAATAAAAGAA