lowQualScore : 11111
lowQualScore : 2 44 77777 4 33 33 66 66 4
lowQualScore : . .. ..... . .. .. .. .. .
lowQualScore : 7 33 11111 3 77 77 33 77 4
consensus : CAACATCAGATGG-CCAGAC-AAGAT-ACG-AAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
Reference ( gi|6 ) : CAACATCAGATGG-CCAGAC-AAAAT-ACA-AAATGAAGACTTGTG--GGAGC--GA--GCGGGACAA-GAGCCAGTGGCTG-AGCAG
gi|8 : CAACATCAGATGG-CCAGAC-AACAT-ACG-AAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|7 : CGACATCAGATGG-CCAGAC-AAAAT-ACG-AAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGTCAGTGGTTG-AGCAG
gi|10 : CAATATCAGATGG-CCAGAC-AAAAT-ACG-AAATGAAGA-TTGTG--GGAGC--GA--GAGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|4 : CAACATCAGATGA-CCAGAC-AAAAT-ACG-AAATGTAGACTTGTG--GGAGC--GAGCGCGGGACAG-GAGCCAGTTGCTG-AGCAG
gi|14 : CAA-ATCAGATAG-CTAGAC-AAA-T-ACG-AA-TGAAGACTAGTG--GGAGC--GA---CGGGACAG-GAATCAATGGCTG-AGCAGa
gi|13 : CAACATCAGATGA-CCAGAA-AGGAT--CAGAAATGAAGACTTATG--GGAAC--GA--GCGGGACAG-GAACCAGTa
gi|5 : CAACATCAGATGGACCGGAA-AAGATCAGA-AAACGAAGATCAGTT--GGAGC--GA--GC-GGACAGCGGACCAGTGGCCT-AGCAGtgtctagc
gi|16 : CAACATCAGATGG-CTGGAA-AGGAT-ATG-ATATAAAAATCTGTG--GAAAC--GA--GCGGAATAG-GAACCAGTGG
gi|9 : AACATCTGATGG-CCAGAC-AAAAT-ACG-AAATGAAGATTTGTT--GTAGA--GA--GTGGGACAG-GAGCCAGTGGCTG-AGCAGt
gi|2 : AACATTCGATGG-CCTGAA-AGGAT--CACAAATGAAGAACTATG--GAGGG--GA--GCAAAACAG-GAACCAATa
gi|3 : cttAACATCCGATGG-CTTGAA-AGGAT--CACAAATGAAGAACTATG--AAGGA--GA--GCAAACCAA-GAAACAGTGGacacatgcaaatc
gi|18 : cttAACATCCGATGG-CCTGAA-AGGAT--CACAAATGAAGAACTATA--GAGGA--GA--GCacatgcaaat
gi|1 : cttCATCCGATAG-CCTGAA-AGGAT--CATAAATGAAGAACTATGGAGGAGCTAGA--GCAAAGCAA-GAACCAATAGaaatc
gi|11 : cttacATCAGATGG-CCAGACTAAAAT-ACG-AAATGGAAATTTGTG--GGAGC--GAG-GCGGGACAG-GAGCCAGTGGCTGAAGCAGacatgcaaa
gi|17 : GG-CCAGTC-AAAAT-ATG-AAATGAAGACTTGTG--GGAGC--GA--GCGGGCCAG-TAGCCTGTGGCTG-AGCAG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TAACATACAATGGCCTGAAAGGATCACAAACGAGGAACTGTGGAGCAGGACAGGGGCAGATGGACTTACACACCA
Unaligned ( gi|15 ): CTTAACATCTGATGCTGAAAGGATAAAATGAAGAACTATGGAGGAGACAAATCAAGAACCAGTAAGACATGCA
Unaligned ( gi|19 ): GAACTATGGAGGTAGAGCAAAGAAGATCAATAGGTATGCAAATCAGG
Alignments
lowQualScore : 1
lowQualScore : 2 2 0 44 1 1 5 4 33 33 55 2 4
lowQualScore : . . . .. . . . . .. .. .. . .
lowQualScore : 5 4 4 11 0 8 1 1 22 22 66 5 0
consensus : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
Reference ( family-4049 ) : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|1 : CAT-CCGATAG-CCTGAA-AGGAT-CATAAATGAAGAACTATGGAGGAGCTAGA--GCAAAGCAA-GAACCAATAG
gi|10 : cttacCAATAT-CAGATGG-CCAGAC-AAAAT-ACGAAATGAAGA-TTGTG--GGAGC--GA--GAGGGACAG-GAGCCAGTGGCTG-AGCAGacatgcaaa
gi|11 : AT-CAGATGG-CCAGACTAAAAT-ACGAAATGGAAATTTGTG--GGAGC--GAG-GCGGGACAG-GAGCCAGTGGCTGAAGCAG
gi|12 : AACATACA-ATGG-CCTGAA-AGGATCAC-AAACGAGGAACTGTG--G-------A--GCAGGACAG-GGGCAGATGG
gi|13 : tCAACAT-CAGATGA-CCAGAA-AGGAT-CAGAAATGAAGACTTATG--GGAAC--GA--GCGGGACAG-GAACCAGTacttacacacca
gi|14 : CAA-AT-CAGATAG-CTAGAC-AA-AT-ACGAA-TGAAGACTAGTG--GGAGC--GA---CGGGACAG-GAATCAATGGCTG-AGCAGtgtctagc
gi|16 : CAACAT-CAGATGG-CTGGAA-AGGAT-ATGATATAAAAATCTGTG--GAAAC--GA--GCGGAATAG-GAACCAGTGGa
gi|17 : GG-CCAGTC-AAAAT-ATGAAATGAAGACTTGTG--GGAGC--GA--GCGGGCCAG-TAGCCTGTGGCTG-AGCAGt
gi|18 : AACAT-CCGATGG-CCTGAA-AGGATCAC-AAATGAAGAACTATA--GAGGA--GA--GCa
gi|2 : cttAACAT-TCGATGG-CCTGAA-AGGATCAC-AAATGAAGAACTATG--GAGGG--GA--GCAAAACAG-GAACCAATaaatc
gi|3 : cttAACAT-CCGATGG-CTTGAA-AGGATCAC-AAATGAAGAACTATG--AAGGA--GA--GCAAACCAA-GAAACAGTGGacacatgcaaatc
gi|4 : cttCAACAT-CAGATGA-CCAGAC-AAAAT-ACGAAATGTAGACTTGTG--GGAGC--GAGCGCGGGACAG-GAGCCAGTTGCTG-AGCAGacatgcaaat
gi|5 : CAACAT-CAGATGGACCGGAA-AAGATCAGAAAACGAAGATCAGTT--GGAGC--GA--GC-GGACAGCGGACCAGTGGCCT-AGCAGa
gi|6 : CAACAT-CAGATGG-CCAGAC-AAAAT-ACAAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAA-GAGCCAGTGGCTG-AGCAG
gi|7 : CGACAT-CAGATGG-CCAGAC-AAAAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGTCAGTGGTTG-AGCAG
gi|8 : CAACAT-CAGATGG-CCAGAC-AACAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|9 : AACAT-CTGATGG-CCAGAC-AAAAT-ACGAAATGAAGATTTGTT--GTAGA--GA--GTGGGACAG-GAGCCAGTGGCTG-AGCAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTAACATCTGATGCTGAAAGGATAAAATGAAGAACTATGGAGGAGACAAATCAAGAACCAGTAAGACATGCA
Unaligned ( gi|19 ): GAACTATGGAGGTAGAGCAAAGAAGATCAATAGGTATGCAAATCAGG
Alignments
lowQualScore : 1
lowQualScore : 2 2 0 44 1 1 5 4 33 33 55 2 4
lowQualScore : . . . .. . . . . .. .. .. . .
lowQualScore : 5 4 4 11 0 8 1 1 22 22 66 5 0
consensus : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
Reference ( family-4049 ) : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|1 : CAT-CCGATAG-CCTGAA-AGGAT-CATAAATGAAGAACTATGGAGGAGCTAGA--GCAAAGCAA-GAACCAATAG
gi|10 : cttacCAATAT-CAGATGG-CCAGAC-AAAAT-ACGAAATGAAGA-TTGTG--GGAGC--GA--GAGGGACAG-GAGCCAGTGGCTG-AGCAGacatgcaaa
gi|11 : AT-CAGATGG-CCAGACTAAAAT-ACGAAATGGAAATTTGTG--GGAGC--GAG-GCGGGACAG-GAGCCAGTGGCTGAAGCAG
gi|12 : AACATACA-ATGG-CCTGAA-AGGATCAC-AAACGAGGAACTGTG--G-------A--GCAGGACAG-GGGCAGATGG
gi|13 : tCAACAT-CAGATGA-CCAGAA-AGGAT-CAGAAATGAAGACTTATG--GGAAC--GA--GCGGGACAG-GAACCAGTacttacacacca
gi|14 : CAA-AT-CAGATAG-CTAGAC-AA-AT-ACGAA-TGAAGACTAGTG--GGAGC--GA---CGGGACAG-GAATCAATGGCTG-AGCAGtgtctagc
gi|16 : CAACAT-CAGATGG-CTGGAA-AGGAT-ATGATATAAAAATCTGTG--GAAAC--GA--GCGGAATAG-GAACCAGTGGa
gi|17 : GG-CCAGTC-AAAAT-ATGAAATGAAGACTTGTG--GGAGC--GA--GCGGGCCAG-TAGCCTGTGGCTG-AGCAGt
gi|18 : AACAT-CCGATGG-CCTGAA-AGGATCAC-AAATGAAGAACTATA--GAGGA--GA--GCa
gi|2 : cttAACAT-TCGATGG-CCTGAA-AGGATCAC-AAATGAAGAACTATG--GAGGG--GA--GCAAAACAG-GAACCAATaaatc
gi|3 : cttAACAT-CCGATGG-CTTGAA-AGGATCAC-AAATGAAGAACTATG--AAGGA--GA--GCAAACCAA-GAAACAGTGGacacatgcaaatc
gi|4 : cttCAACAT-CAGATGA-CCAGAC-AAAAT-ACGAAATGTAGACTTGTG--GGAGC--GAGCGCGGGACAG-GAGCCAGTTGCTG-AGCAGacatgcaaat
gi|5 : CAACAT-CAGATGGACCGGAA-AAGATCAGAAAACGAAGATCAGTT--GGAGC--GA--GC-GGACAGCGGACCAGTGGCCT-AGCAGa
gi|6 : CAACAT-CAGATGG-CCAGAC-AAAAT-ACAAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAA-GAGCCAGTGGCTG-AGCAG
gi|7 : CGACAT-CAGATGG-CCAGAC-AAAAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGTCAGTGGTTG-AGCAG
gi|8 : CAACAT-CAGATGG-CCAGAC-AACAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|9 : AACAT-CTGATGG-CCAGAC-AAAAT-ACGAAATGAAGATTTGTT--GTAGA--GA--GTGGGACAG-GAGCCAGTGGCTG-AGCAG
blockSeqs : A A CT A C G T . . GC C A
blockSeqs : . . C A C G A . . G . .
blockSeqs : . . A G C G C . . . . .
blockSeqs : . . A G C G C . . . . .
blockSeqs : . . C G C G T . . . . .
blockSeqs : . . A A . G C . . . . .
blockSeqs : . . C G . G A . . . . .
blockSeqs : . . A G . A A . . . . .
blockSeqs : . . A G . A A . . . . .
blockSeqs : . . A A . G C . . . .
blockSeqs : . . C G . G T . . . .
blockSeqs : . . A A . G C . . . .
blockSeqs : . . C A . . C . . . .
blockSeqs : . . C C . . C . . . .
blockSeqs : . . C A . . T . . . .
blockSeqs : . C . . . . . . .
blockSeqCons : ** **
originalCons : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
finalCons : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTAACATCTGATGCTGAAAGGATAAAATGAAGAACTATGGAGGAGACAAATCAAGAACCAGTAAGACATGCA
Unaligned ( gi|19 ): GAACTATGGAGGTAGAGCAAAGAAGATCAATAGGTATGCAAATCAGG
Alignments
lowQualScore : 1
lowQualScore : 2 2 0 44 1 1 5 4 33 33 55 2 4
lowQualScore : . . . .. . . . . .. .. .. . .
lowQualScore : 5 4 4 11 0 8 1 1 22 22 66 5 0
consensus : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
Reference ( family-4049 ) : CAACAT-CAGATGG-CCAGAC-AAGAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|1 : CAT-CCGATAG-CCTGAA-AGGAT-CATAAATGAAGAACTATGGAGGAGCTAGA--GCAAAGCAA-GAACCAATAG
gi|10 : cttacCAATAT-CAGATGG-CCAGAC-AAAAT-ACGAAATGAAGA-TTGTG--GGAGC--GA--GAGGGACAG-GAGCCAGTGGCTG-AGCAGacatgcaaa
gi|11 : AT-CAGATGG-CCAGACTAAAAT-ACGAAATGGAAATTTGTG--GGAGC--GAG-GCGGGACAG-GAGCCAGTGGCTGAAGCAG
gi|12 : AACATACA-ATGG-CCTGAA-AGGATCAC-AAACGAGGAACTGTG--G-------A--GCAGGACAG-GGGCAGATGG
gi|13 : tCAACAT-CAGATGA-CCAGAA-AGGAT-CAGAAATGAAGACTTATG--GGAAC--GA--GCGGGACAG-GAACCAGTacttacacacca
gi|14 : CAA-AT-CAGATAG-CTAGAC-AA-AT-ACGAA-TGAAGACTAGTG--GGAGC--GA---CGGGACAG-GAATCAATGGCTG-AGCAGtgtctagc
gi|16 : CAACAT-CAGATGG-CTGGAA-AGGAT-ATGATATAAAAATCTGTG--GAAAC--GA--GCGGAATAG-GAACCAGTGGa
gi|17 : GG-CCAGTC-AAAAT-ATGAAATGAAGACTTGTG--GGAGC--GA--GCGGGCCAG-TAGCCTGTGGCTG-AGCAGt
gi|18 : AACAT-CCGATGG-CCTGAA-AGGATCAC-AAATGAAGAACTATA--GAGGA--GA--GCa
gi|2 : cttAACAT-TCGATGG-CCTGAA-AGGATCAC-AAATGAAGAACTATG--GAGGG--GA--GCAAAACAG-GAACCAATaaatc
gi|3 : cttAACAT-CCGATGG-CTTGAA-AGGATCAC-AAATGAAGAACTATG--AAGGA--GA--GCAAACCAA-GAAACAGTGGacacatgcaaatc
gi|4 : cttCAACAT-CAGATGA-CCAGAC-AAAAT-ACGAAATGTAGACTTGTG--GGAGC--GAGCGCGGGACAG-GAGCCAGTTGCTG-AGCAGacatgcaaat
gi|5 : CAACAT-CAGATGGACCGGAA-AAGATCAGAAAACGAAGATCAGTT--GGAGC--GA--GC-GGACAGCGGACCAGTGGCCT-AGCAGa
gi|6 : CAACAT-CAGATGG-CCAGAC-AAAAT-ACAAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAA-GAGCCAGTGGCTG-AGCAG
gi|7 : CGACAT-CAGATGG-CCAGAC-AAAAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGTCAGTGGTTG-AGCAG
gi|8 : CAACAT-CAGATGG-CCAGAC-AACAT-ACGAAATGAAGACTTGTG--GGAGC--GA--GCGGGACAG-GAGCCAGTGGCTG-AGCAG
gi|9 : AACAT-CTGATGG-CCAGAC-AAAAT-ACGAAATGAAGATTTGTT--GTAGA--GA--GTGGGACAG-GAGCCAGTGGCTG-AGCAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTAACATCTGATGCTGAAAGGATAAAATGAAGAACTATGGAGGAGACAAATCAAGAACCAGTAAGACATGCA
Unaligned ( gi|19 ): GAACTATGGAGGTAGAGCAAAGAAGATCAATAGGTATGCAAATCAGG