lowQualScore : 1111111
lowQualScore : 2 7777777 9999999999 3 22 5555555 55 11 1 1 1 2 33 11 666 1
lowQualScore : . ....... .......... . .. ....... .. .. . . . . .. .. ... .
lowQualScore : 4 6666666 2222222222 8 33 6666666 22 77 3 3 3 7 11 88 888 3
consensus : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAA--T--T--ATGAC-GG--GCG-T-ATAATGCT-A-CG-TTG--GC--G-TTGCTCTTGTGT
Reference ( gi|6 ) : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAA--T--T--AAGAC-AG--GCG-T-ATAATGCT-A-CA-TTG--GT--G-TTGCTCTTGTAT
gi|3 : TCTTTATTT-ACA-------AACTG----------TCT-TCTCTGTAATAA--T--T--ATGAT-GG--AAG-A-ATATTGCT-A-CA-TTG--A---G-TTGCTATTG
gi|8 : tTCTATACCT-ACA-------TTTTC----------TCC-TCTCTGAAATAA--TTAT--AGGAC-GG--GCT-T-GTAA-ACT-A-CG-GTG--GC--G-ATGCAATTGTatgtttt
gi|4 : TCCATATCT-ACA-------TCCTG----------TCTCTCTTTGAAATAA--T--T---AGAC-TG--G-A-T-ATAATGCT-ATTG-CTG--GC--A-TT-CTCTT-TAT
gi|22 : tcTCTATATGT-ACA-------TTCTG----------TCT-TCTCTGGA----------------------------ATAATGTT-A-CG-TTG--GC--G-TTGCTCTTGTtc
gi|18 : TTTATATCT-ACA-------TTCTG----------TCT-TCTCTGAt
gi|12 : ctgagtgtatggatttgaataaaattgcctttTTTATATGT-ACA-------CTCCG----------TCT-TCTCTGAAATAA--
gi|7 : ggaccgagtgcatgtacttgaatgatattgccttcCTATATCT-ACAATGTATATTCTG----------TCT-TCTCTGAAATAA--T--A--ATGAC-GG--GTG-T-ATAATGCT-A-TG-TTG--GC--A-TTGC
gi|13 : TATATCT-ACA-------TTATG----------CCT-TCTCTGAAATAA--T--T--ACAAT-GG--GTG-T-ATAATGCT-A-TG-TTG--GC--A-TTACTCgc
gi|9 : TAGATCT-ACA-------TTCTG----------TCT-TCTCAGAAATAA--T--T--ATGGC-GG--TCG-C-ATATTGCT-A-TG-TTG--GC--G-TTGGTCTTGT
gi|31 : aATATTT-ACA-------TTCTG----------TCT-TCTCTGAAATAA--T--T--ATGAC-AG--
gi|11 : aTATCT-ACA-------TTCCG----------TCT-TCTCTGAAATAA--T-------GAT-GG--GCA-T-ATAATGCT-A-CA-TTG--CC--G-TTGCTCTTGT
gi|15 : TATCT-CCA-------TTCCG----------TCT-T---TGAAATAA--T--T--ATGAC-GG--GCG-T-ATAATGAT-A-CG-T----GTTCG-TTGCTCTTGTtac
gi|2 : TATCT-ACA-------TTTTGACATGTGTTCTCT-TCTCTGAAATGA--T--T--ATGAC-GGATGTA-T-ATAATGCT-A-TG-TTG--GC--A-TTGCTCTT
gi|5 : ATCTTACT-------TTATG----------TCTGTCTCTGAAATA---T--T--ATGAT-AG--GC-----TAATGCT-AACAATTG--GC--G-TTGCTCTTGTGT
gi|26 : ATCT-ACA-------TTCTG----------ACT-TCTCTGAAATAA--T--T--ATGAT-GG--GGG-T-ACGATGTT-caatata
gi|14 : T-ACA-------TTCTG----------TTG-ACTCTGAAATAA--T--T--ATGAC-GG--GTG-T-ATAATGCT-C-CT-TCG--GT--G-T---TCTTGTc
gi|10 : tg-ACA-------TCCTG----------TCT-TCTTTGAAGTAA--T-----------A---------ATGATGCT-A-CC-TAG--GC--A-TTGCTCTTGTtg
gi|20 : TCTG----------TCT-TCTCTGAAATAA--T--T--ATGAC-GG--GCG-T-ATAATGCT-A-CG-TTG--GC--A-TT--TCTTGTtaaaagttatgttcaatt
gi|17 : TCTG----------TTT-TCTCTGAAATAATTT--T--ATGAC-AG--GCA-T-ATAATGCT-A-C--TTG--GC--A-TTGCTCTTGT
gi|19 : -TCTCTGAAATCA--T--T--ATGA--GG--GTG-T-ATAATGCT-A-CA-TTG--GC--A-TTGGTCGTGta
gi|16 : tttctata-TCTCTAAAGTAT--A--T--ACGG---G--GTG-T-GCAATGCT-A-CA-TTG--GC--ATTTGCTCTTGT
gi|23 : ccctttctataCTCAGCAATGA--T--TCTATGACCGG--GCGGTGATAATGCTTA-CG-CTG--GC--G-TTGCTCTt
gi|27 : AAGTAA--T-----ATGAC-GG--GTG-T-GCAATGCT-A-CA-TTG--GC--A-TTGCTCTTGT
gi|24 : TAA--T--T--ATGAC-AG--GCA-T-ATAATGCT-A-CA-TTT--GC--A-TTGCTCATGTt
gi|21 : tcttTAA--T--T--ATGAC-AG--GCA-T-ATAATGCT-A-CA-TTGCAGT--G-CTtata
gi|28 : cttcctcttGAC-GG--GCG-T-ATAATGCT-A-CA-TTG--GC--G-GTGCTCcagtgttataa
gi|30 : accatGAT-GG--GCG-T-ATAATGCT-A-CG-TTG--GT--A-TTGCTCgatttt
gi|32 : tGAC-GG--ACA-T-ATAATGCT-A-TG-TTG--GC--A-TTGCTCTTGTgtttta
gi|35 : G--GCG-T-ATAATGCT-A-TG-TTG--GT--G-TTGCTCTTGTtg
gi|25 : G--GGG-T-ATAATGCT-A-CA-TTG--GC--G-TTGCTCTTGTttat
gi|33 : gG--GCG-T-ATAATGCT-A-CA-TTG--GC--A-TTGCTCTAGTttttggaggtgtgttta
gi|29 : G--GCA-T-ATAATGCT-A-CA-TTG--GC--G-TTGCTCttattt
gi|34 : gG--GCG-T-ATAATGCT-A-CG-TTG------A-TTGCTCTTGTgttatctttt
gi|36 : G--GCG-T-ATAATGCC-A-CG-TTT--GC--G-TTGCTCATGTtactatt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): CAGCAGAATGCATGTAAGTATAGTCATGATTAACATTCTAGGTATGAACTACGACACTCTACCCCGTCGAAGTTTTCATTAC
Alignments
lowQualScore : 2 7777777 8888888888 3 44 22 1 11 1 1 1 1 2 1 1 1
lowQualScore : . ....... .......... . .. .. . .. . . . . . . . .
lowQualScore : 2 2222222 8888888888 6 44 00 4 77 2 2 2 2 6 3 3 8
consensus : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
Reference ( family-3995 ) : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
gi|10 : -ACA-------TCCTG----------TCT-TCTTTGAAGTAATA--AT--G-----------------ATGCT-A-CC-TAGGCA-TTGCTCTTG-
gi|11 : TATCT-ACA-------TTCCG----------TCT-TCTCTGAAATAAT-------GAT-GG--G-CA-T-ATAATGCT-A-CA-TTGCCG-TTGCTCTTG-taaaagttatgttcaatt
gi|12 : TTTATATGT-ACA-------CTCCG----------TCT-TCTCTGAAATAAtac
gi|13 : ggaccgagtgcatgtacttgaatgatattgccttcTATATCT-ACA-------TTATG----------CCT-TCTCTGAAATAATT--AC--AAT-GG--G-TG-T-ATAATGCT-A-TG-TTGGCA-TTACTC
gi|14 : T-ACA-------TTCTG----------TTG-ACTCTGAAATAATT--AT--GAC-GG--G-TG-T-ATAATGCT-C-CT-TCGG----TGTTCTTG-
gi|15 : tgTATCT-CCA-------TTCCG----------TCT-T---TGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGAT-A-CG-TGTTCG-TTGCTCTTG-tg
gi|16 : -TCTCTAAAGTA--T--AT---AC-GG--GGTG-T-GCAATGCT-A-CA-TTGGCATTTGCTCTTG-
gi|17 : ccctttctataTCTG----------TTT-TCTCTGAAATAATTTTAT--GAC-AG--G-CA-T-ATAATGCT-A-C--TTGGCA-TTGCTCTTG-t
gi|18 : TTTATATCT-ACA-------TTCTG----------TCT-TCTCTGAta
gi|19 : ctgagtgtatggatttgaataaaattgccttt-TCTCTGAAATCATT--AT--GA--GG--G-TG-T-ATAATGCT-A-CA-TTGGCA-TTGGTCGTG-
gi|2 : tttctataTATCT-ACA-------TTTTGACATGTGTTCTCT-TCTCTGAAATGATT--AT--GAC-GGATG-TA-T-ATAATGCT-A-TG-TTGGCA-TTGCTCTT
gi|20 : TCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCA-TT--TCTTG-
gi|21 : TAATT--AT--GAC-AG--G-CA-T-ATAATGCT-A-CA-TT-GCA-GTGCTC
gi|22 : cttcctcttTCTATATGT-ACA-------TTCTG----------TCT-TCTCTGGA---------------------------ATAATGTT-A-CG-TTGGCG-TTGCTCTTG-agtgttataa
gi|23 : CTCAGCAATGATTCTAT--GACCGG--G-CGGTGATAATGCTTA-CG-CTGGCG-TTGCTCTt
gi|24 : TAATT--AT--GAC-AG--G-CA-T-ATAATGCT-A-CA-TTTGCA-TTGCTCATG-
gi|25 : tctt-GG--G-GG-T-ATAATGCT-A-CA-TTGGCG-TTGCTCTTG-tata
gi|26 : ATCT-ACA-------TTCTG----------ACT-TCTCTGAAATAATT--AT--GAT-GG--G-GG-T-ACGATGTT-ttttggaggtgtgttta
gi|27 : AAGTAAT---AT--GAC-GG--G-TG-T-GCAATGCT-A-CA-TTGGCA-TTGCTCTTG-c
gi|28 : --AT--GAC-GG--G-CG-T-ATAATGCT-A-CA-TTGGCG-GTGCTCt
gi|29 : acc-GG--G-CA-T-ATAATGCT-A-CA-TTGGCG-TTGCTCgatttt
gi|3 : TCTTTATTT-ACA-------AACTG----------TCT-TCTCTGTAATAATT--AT--GAT-GG--A-AG-A-ATATTGCT-A-CA-TTGA-G-TTGCTATTGATGTgttatctttt
gi|30 : tT--GAT-GG--G-CG-T-ATAATGCT-A-CG-TTGGTA-TTGCTCttt
gi|31 : ATATTT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-AG--gtttta
gi|32 : a--GAC-GG--A-CA-T-ATAATGCT-A-TG-TTGGCA-TTGCTCTTG-
gi|33 : G--G-CG-T-ATAATGCT-A-CA-TTGGCA-TTGCTCTAG-tg
gi|34 : G--G-CG-T-ATAATGCT-A-CG-TTG--A-TTGCTCTTG-ttattt
gi|35 : G--G-CG-T-ATAATGCT-A-TG-TTGGTG-TTGCTCTTG-tactatt
gi|36 : G--G-CG-T-ATAATGCC-A-CG-TTTGCG-TTGCTCATG-ttat
gi|4 : TCCATATCT-ACA-------TCCTG----------TCTCTCTTTGAAATAATT--A---GAC-TG--G--A-T-ATAATGCT-ATTG-CTGGCA-TT-CTCTTta
gi|5 : tcATCTTACT-------TTATG----------TCTGTCTCTGAAATA-TT--AT--GAT-AG--G-C-----TAATGCT-AACAATTGGCG-TTGCTCTTG-TGTtattc
gi|6 : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AA--GAC-AG--G-CG-T-ATAATGCT-A-CA-TTGGTG-TTGCTCTTG-TATcaatata
gi|7 : CTATATCT-ACAATGTATATTCTG----------TCT-TCTCTGAAATAATA--AT--GAC-GG--G-TG-T-ATAATGCT-A-TG-TTGGCA-TTGC
gi|8 : TCTATACCT-ACA-------TTTTC----------TCC-TCTCTGAAATAATT--ATAGGAC-GG--G-CT-T-GTAA-ACT-A-CG-GTGGCG-ATGCAATTG-gc
gi|9 : TAGATCT-ACA-------TTCTG----------TCT-TCTCAGAAATAATT--AT--GGC-GG--T-CG-C-ATATTGCT-A-TG-TTGGCG-TTGGTCTTG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCAGAATGCATGTAAGTATAGTCATGATTAACATTCTAGGTATGAACTACGACACTCTACCCCGTCGAAGTTTTCATTAC
Alignments
lowQualScore : 2 7777777 8888888888 3 44 22 1 11 1 1 1 1 2 1 1 1
lowQualScore : . ....... .......... . .. .. . .. . . . . . . . .
lowQualScore : 2 2222222 8888888888 6 44 00 4 77 2 2 2 2 6 3 3 8
consensus : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
Reference ( family-3995 ) : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
gi|10 : -ACA-------TCCTG----------TCT-TCTTTGAAGTAATA--AT--G-----------------ATGCT-A-CC-TAGGCA-TTGCTCTTG-
gi|11 : TATCT-ACA-------TTCCG----------TCT-TCTCTGAAATAAT-------GAT-GG--G-CA-T-ATAATGCT-A-CA-TTGCCG-TTGCTCTTG-taaaagttatgttcaatt
gi|12 : TTTATATGT-ACA-------CTCCG----------TCT-TCTCTGAAATAAtac
gi|13 : ggaccgagtgcatgtacttgaatgatattgccttcTATATCT-ACA-------TTATG----------CCT-TCTCTGAAATAATT--AC--AAT-GG--G-TG-T-ATAATGCT-A-TG-TTGGCA-TTACTC
gi|14 : T-ACA-------TTCTG----------TTG-ACTCTGAAATAATT--AT--GAC-GG--G-TG-T-ATAATGCT-C-CT-TCGG----TGTTCTTG-
gi|15 : tgTATCT-CCA-------TTCCG----------TCT-T---TGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGAT-A-CG-TGTTCG-TTGCTCTTG-tg
gi|16 : -TCTCTAAAGTA--T--AT---AC-GG--GGTG-T-GCAATGCT-A-CA-TTGGCATTTGCTCTTG-
gi|17 : ccctttctataTCTG----------TTT-TCTCTGAAATAATTTTAT--GAC-AG--G-CA-T-ATAATGCT-A-C--TTGGCA-TTGCTCTTG-t
gi|18 : TTTATATCT-ACA-------TTCTG----------TCT-TCTCTGAta
gi|19 : ctgagtgtatggatttgaataaaattgccttt-TCTCTGAAATCATT--AT--GA--GG--G-TG-T-ATAATGCT-A-CA-TTGGCA-TTGGTCGTG-
gi|2 : tttctataTATCT-ACA-------TTTTGACATGTGTTCTCT-TCTCTGAAATGATT--AT--GAC-GGATG-TA-T-ATAATGCT-A-TG-TTGGCA-TTGCTCTT
gi|20 : TCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCA-TT--TCTTG-
gi|21 : TAATT--AT--GAC-AG--G-CA-T-ATAATGCT-A-CA-TT-GCA-GTGCTC
gi|22 : cttcctcttTCTATATGT-ACA-------TTCTG----------TCT-TCTCTGGA---------------------------ATAATGTT-A-CG-TTGGCG-TTGCTCTTG-agtgttataa
gi|23 : CTCAGCAATGATTCTAT--GACCGG--G-CGGTGATAATGCTTA-CG-CTGGCG-TTGCTCTt
gi|24 : TAATT--AT--GAC-AG--G-CA-T-ATAATGCT-A-CA-TTTGCA-TTGCTCATG-
gi|25 : tctt-GG--G-GG-T-ATAATGCT-A-CA-TTGGCG-TTGCTCTTG-tata
gi|26 : ATCT-ACA-------TTCTG----------ACT-TCTCTGAAATAATT--AT--GAT-GG--G-GG-T-ACGATGTT-ttttggaggtgtgttta
gi|27 : AAGTAAT---AT--GAC-GG--G-TG-T-GCAATGCT-A-CA-TTGGCA-TTGCTCTTG-c
gi|28 : --AT--GAC-GG--G-CG-T-ATAATGCT-A-CA-TTGGCG-GTGCTCt
gi|29 : acc-GG--G-CA-T-ATAATGCT-A-CA-TTGGCG-TTGCTCgatttt
gi|3 : TCTTTATTT-ACA-------AACTG----------TCT-TCTCTGTAATAATT--AT--GAT-GG--A-AG-A-ATATTGCT-A-CA-TTGA-G-TTGCTATTGATGTgttatctttt
gi|30 : tT--GAT-GG--G-CG-T-ATAATGCT-A-CG-TTGGTA-TTGCTCttt
gi|31 : ATATTT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-AG--gtttta
gi|32 : a--GAC-GG--A-CA-T-ATAATGCT-A-TG-TTGGCA-TTGCTCTTG-
gi|33 : G--G-CG-T-ATAATGCT-A-CA-TTGGCA-TTGCTCTAG-tg
gi|34 : G--G-CG-T-ATAATGCT-A-CG-TTG--A-TTGCTCTTG-ttattt
gi|35 : G--G-CG-T-ATAATGCT-A-TG-TTGGTG-TTGCTCTTG-tactatt
gi|36 : G--G-CG-T-ATAATGCC-A-CG-TTTGCG-TTGCTCATG-ttat
gi|4 : TCCATATCT-ACA-------TCCTG----------TCTCTCTTTGAAATAATT--A---GAC-TG--G--A-T-ATAATGCT-ATTG-CTGGCA-TT-CTCTTta
gi|5 : tcATCTTACT-------TTATG----------TCTGTCTCTGAAATA-TT--AT--GAT-AG--G-C-----TAATGCT-AACAATTGGCG-TTGCTCTTG-TGTtattc
gi|6 : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AA--GAC-AG--G-CG-T-ATAATGCT-A-CA-TTGGTG-TTGCTCTTG-TATcaatata
gi|7 : CTATATCT-ACAATGTATATTCTG----------TCT-TCTCTGAAATAATA--AT--GAC-GG--G-TG-T-ATAATGCT-A-TG-TTGGCA-TTGC
gi|8 : TCTATACCT-ACA-------TTTTC----------TCC-TCTCTGAAATAATT--ATAGGAC-GG--G-CT-T-GTAA-ACT-A-CG-GTGGCG-ATGCAATTG-gc
gi|9 : TAGATCT-ACA-------TTCTG----------TCT-TCTCAGAAATAATT--AT--GGC-GG--T-CG-C-ATATTGCT-A-TG-TTGGCG-TTGGTCTTG-
blockSeqs : T ATGTATA ACATGTGTTC C TT AG C AT G G G T T A T A
blockSeqs : . . . G CT . . . . . . . A . . .
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blockSeqs : .
blockSeqCons :
originalCons : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
finalCons : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCAGAATGCATGTAAGTATAGTCATGATTAACATTCTAGGTATGAACTACGACACTCTACCCCGTCGAAGTTTTCATTAC
Alignments
lowQualScore : 2 7777777 8888888888 3 44 22 1 11 1 1 1 1 2 1 1 1
lowQualScore : . ....... .......... . .. .. . .. . . . . . . . .
lowQualScore : 2 2222222 8888888888 6 44 00 4 77 2 2 2 2 6 3 3 8
consensus : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
Reference ( family-3995 ) : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCG-TTGCTCTTG-TGT
gi|10 : -ACA-------TCCTG----------TCT-TCTTTGAAGTAATA--AT--G-----------------ATGCT-A-CC-TAGGCA-TTGCTCTTG-
gi|11 : TATCT-ACA-------TTCCG----------TCT-TCTCTGAAATAAT-------GAT-GG--G-CA-T-ATAATGCT-A-CA-TTGCCG-TTGCTCTTG-taaaagttatgttcaatt
gi|12 : TTTATATGT-ACA-------CTCCG----------TCT-TCTCTGAAATAAtac
gi|13 : ggaccgagtgcatgtacttgaatgatattgccttcTATATCT-ACA-------TTATG----------CCT-TCTCTGAAATAATT--AC--AAT-GG--G-TG-T-ATAATGCT-A-TG-TTGGCA-TTACTC
gi|14 : T-ACA-------TTCTG----------TTG-ACTCTGAAATAATT--AT--GAC-GG--G-TG-T-ATAATGCT-C-CT-TCGG----TGTTCTTG-
gi|15 : tgTATCT-CCA-------TTCCG----------TCT-T---TGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGAT-A-CG-TGTTCG-TTGCTCTTG-tg
gi|16 : -TCTCTAAAGTA--T--AT---AC-GG--GGTG-T-GCAATGCT-A-CA-TTGGCATTTGCTCTTG-
gi|17 : ccctttctataTCTG----------TTT-TCTCTGAAATAATTTTAT--GAC-AG--G-CA-T-ATAATGCT-A-C--TTGGCA-TTGCTCTTG-t
gi|18 : TTTATATCT-ACA-------TTCTG----------TCT-TCTCTGAta
gi|19 : ctgagtgtatggatttgaataaaattgccttt-TCTCTGAAATCATT--AT--GA--GG--G-TG-T-ATAATGCT-A-CA-TTGGCA-TTGGTCGTG-
gi|2 : tttctataTATCT-ACA-------TTTTGACATGTGTTCTCT-TCTCTGAAATGATT--AT--GAC-GGATG-TA-T-ATAATGCT-A-TG-TTGGCA-TTGCTCTT
gi|20 : TCTG----------TCT-TCTCTGAAATAATT--AT--GAC-GG--G-CG-T-ATAATGCT-A-CG-TTGGCA-TT--TCTTG-
gi|21 : TAATT--AT--GAC-AG--G-CA-T-ATAATGCT-A-CA-TT-GCA-GTGCTC
gi|22 : cttcctcttTCTATATGT-ACA-------TTCTG----------TCT-TCTCTGGA---------------------------ATAATGTT-A-CG-TTGGCG-TTGCTCTTG-agtgttataa
gi|23 : CTCAGCAATGATTCTAT--GACCGG--G-CGGTGATAATGCTTA-CG-CTGGCG-TTGCTCTt
gi|24 : TAATT--AT--GAC-AG--G-CA-T-ATAATGCT-A-CA-TTTGCA-TTGCTCATG-
gi|25 : tctt-GG--G-GG-T-ATAATGCT-A-CA-TTGGCG-TTGCTCTTG-tata
gi|26 : ATCT-ACA-------TTCTG----------ACT-TCTCTGAAATAATT--AT--GAT-GG--G-GG-T-ACGATGTT-ttttggaggtgtgttta
gi|27 : AAGTAAT---AT--GAC-GG--G-TG-T-GCAATGCT-A-CA-TTGGCA-TTGCTCTTG-c
gi|28 : --AT--GAC-GG--G-CG-T-ATAATGCT-A-CA-TTGGCG-GTGCTCt
gi|29 : acc-GG--G-CA-T-ATAATGCT-A-CA-TTGGCG-TTGCTCgatttt
gi|3 : TCTTTATTT-ACA-------AACTG----------TCT-TCTCTGTAATAATT--AT--GAT-GG--A-AG-A-ATATTGCT-A-CA-TTGA-G-TTGCTATTGATGTgttatctttt
gi|30 : tT--GAT-GG--G-CG-T-ATAATGCT-A-CG-TTGGTA-TTGCTCttt
gi|31 : ATATTT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AT--GAC-AG--gtttta
gi|32 : a--GAC-GG--A-CA-T-ATAATGCT-A-TG-TTGGCA-TTGCTCTTG-
gi|33 : G--G-CG-T-ATAATGCT-A-CA-TTGGCA-TTGCTCTAG-tg
gi|34 : G--G-CG-T-ATAATGCT-A-CG-TTG--A-TTGCTCTTG-ttattt
gi|35 : G--G-CG-T-ATAATGCT-A-TG-TTGGTG-TTGCTCTTG-tactatt
gi|36 : G--G-CG-T-ATAATGCC-A-CG-TTTGCG-TTGCTCATG-ttat
gi|4 : TCCATATCT-ACA-------TCCTG----------TCTCTCTTTGAAATAATT--A---GAC-TG--G--A-T-ATAATGCT-ATTG-CTGGCA-TT-CTCTTta
gi|5 : tcATCTTACT-------TTATG----------TCTGTCTCTGAAATA-TT--AT--GAT-AG--G-C-----TAATGCT-AACAATTGGCG-TTGCTCTTG-TGTtattc
gi|6 : TCTATATCT-ACA-------TTCTG----------TCT-TCTCTGAAATAATT--AA--GAC-AG--G-CG-T-ATAATGCT-A-CA-TTGGTG-TTGCTCTTG-TATcaatata
gi|7 : CTATATCT-ACAATGTATATTCTG----------TCT-TCTCTGAAATAATA--AT--GAC-GG--G-TG-T-ATAATGCT-A-TG-TTGGCA-TTGC
gi|8 : TCTATACCT-ACA-------TTTTC----------TCC-TCTCTGAAATAATT--ATAGGAC-GG--G-CT-T-GTAA-ACT-A-CG-GTGGCG-ATGCAATTG-gc
gi|9 : TAGATCT-ACA-------TTCTG----------TCT-TCTCAGAAATAATT--AT--GGC-GG--T-CG-C-ATATTGCT-A-TG-TTGGCG-TTGGTCTTG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCAGAATGCATGTAAGTATAGTCATGATTAACATTCTAGGTATGAACTACGACACTCTACCCCGTCGAAGTTTTCATTAC