lowQualScore : 1111111111111111111 111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 33333 111 11111 11 2222 11 1111111111111111111 11 2222222 666666666666666666666666666666666666666666 11 1 11111 11 333 11111 1 11 111 222222222222222222222222222222222222222222222222222222222 11 33 33 11
lowQualScore : 1 3 22222222 3 3 55 11111 55 0 55 000 00000 00 0 0000 1 5 66 66 9999999999999999999 22 9999999 2 222222222222222222222222222222222222222222 00 0 2 55555 1 888 00 2 444 1 0 6 6 6 33 77777 6 11 8 666 777777777777777777777777777777777777777777777777777777777 7 88 3 00 99 8 00
lowQualScore : . . ........ . . .. ..... .. . .. ... ..... .. . .... . . .. .. ................... .. ....... . .......................................... .. . . ..... . ... .. . ... . . . . . .. ..... . .. . ... ......................................................... . .. . .. .. . ..
lowQualScore : 0 2 11111111 1 5 55 99999 55 5 55 111 00000 11 1 9999 7 7 88 55 8888888888888888888 55 2222222 0 555555555555555555555555555555555555555555 22 0 5 33333 0 555 22 5 222 0 7 7 7 7 22 22222 0 00 2 666 777777777777777777777777777777777777777777777777777777777 3 33 7 33 00 3 00
consensus : TTTTTAGCATAC-AT-GTAATTTGAATA--GTTTTATCAAT--NATA--AGGCTT--CATTT-TAAAAC-----AATTCATGTT-CAAAACACAT-TTATACGGT-ATGNTCCAAGTTANTNAAA--AC-GTTAA---ACCTTG-TC-CA-GCGTCAGTATTTAGCG--CACTGAAGTGCCGTTTCCC----GGCAGGCCGT---TAACTGGACC-GGGGTCAATCGACAAGGATTGCATCCT-TTGCAGCCACTG--TCTTCCTTTTTATGNA-C-TTCTCN----AAC-GAAT--AGGAAAA--TGACT---GGTCGA---------GTGTACATTTTG-T-TGG-TTTC---CCGTG-GT--CGTAATATAATAATTTGCT--GNTT--TTTTTCTTT--AAATTCAACTANAACTT
Reference ( gi|3 ) : TTTTTAGCATAC-AT-GTAATTTGGATA--GTTTTATCAAT--TA-A--AGGCTT--CATTT-TGAAAC-----AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAAG-AC-GTTAATAGACCTTG-TC-TA-GCATCAGCATTTAGTG--CACTGAAGTGCCGTTTCC-----AGTAAGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT---TCTTTCTTTTCATGGA-C-TCCTCA----AAC-AAAT--AGGAAAA--TGAAT---GGTCAA---------GTGTACATTTTG-T-TGGATTTCTCTTTATGTAT-ATGTAATATAATAATTTGCT--GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTT
gi|1 : TTTTTAGCATACCAT-G-AATTTGAA-A--GTTTTTCCAAT---A-A--GGGCT---CATTT--AAAAC-----AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAA--GACCTTGGTCGTA-GCATCAGCATTTA-TG--CACTGAAGTGCCGTTTCC-----AGTAA-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAGC-ACT---TCTTTCTTT-CATGGA-C-TCCTCA----AACCAAAT--AGGAAA---TGAAT---G-TCAA---------GTGTA-ATTT-G-T-TGGATTTCT--TTATGTATTCTGTAATATAATAATTTGCT--GCTTAGTTTTTCTTTG-AAATTCATCT
gi|9 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATAC-AT-GTAATTTGGAAA--GTTTTATCAAT-----A--AGGCTT--CATTT-TGAAAC-----AATTCA
gi|2 : tgtatatgtaagagttatccttcctttatgtggaattatattttgtaaaaattattttgatttgtTTTTTA----AC-AT-G--ATTTGAAAG--GTTTTATCAAT--GATA--AGTCTT--CAATT-TAAAAC-----AATTCACGCA-CAAAAC-----TCATACG--------------TAGTAA--------TTAA-ACACCTTG-TC-C--GCGTCAGTATTTA------------------TTCCC-----GGCAGGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCA-----TTG-----------TCTTCCTTTTTATGGA-C-TTCTCC----AACGAAAC--AGTAAAA--TGACT---GG-CGATTACTTGTTGTGTACATTTTG-GATGG-TTTC-------------CGTGGTAC-ATAATTTGCTAGGTTT--TTTTTTTTTTTCAATTCAACTATAACTT
gi|5 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAAC-CAC-ATTATAAC------A--GTTTTATCAAT--TA-A----GCTT--CACTT-TAAAAT-----GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TTG-TC-CA-GT----GTATGTAGCGACCAC--ATGTGCTGTTTTCTGGGAAATGAACCGTCAATAACTGatttcacggcgaagcc
gi|8 : aaaaaatatgccaatTCTTTAGCATG--------ATTGAAATA--GTTTTATCAATGATA-A--AGA-TT--CATTT-TAAAAC-----AATTCATGTA-CAAAAaccagtaatatatgataataatggaaact
gi|10 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATG--------ATTCAGATATAGTTTTATCAAT--GATA--AGACTT--CATTT-TTAAAC-----CATTC-TGGT--ACAACACA---TATACCGT-
gi|6 : cttgcatatgtaagagttatccatatcgtgtaatttTAATTTAAATA--GTTCTATCAAT--AATA--AGACTT--TATTA--AAAAG-----AATTCATGTA-CAAAACATATAATACACAGT-ggt
gi|2 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGAATT--GTTTTA--AAT--TG-A--AGACTTATCATTGATAAAACCTTTCAAATCATGTT-AAAAACGT-T-TTACAGGGT-AT
gi|4 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaATA--GTTTTAACATT--GATA--AGACAT---ATTT-TAAAA------GACCCATATT-----ACACA---------GT-ATAATCCATATTATTCAAA-------------ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCT---GGCAGG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG-TCTTCCTTTTTATGTAGC-ATCTCC----AAT-GAACAGAGAAAAA--TGACT---GG-CAA---------TT-----TCTTG-T-TAGGTcgcacaaaactcatacgtagtaattaaacaccttgtccgcgtcagtatttattcccggcaggaagccaacttgggtcgatgaggattgcattgtcttcctttttatggacttctccaacgaaacagtaaaatgactggcgattacttgttgtgtacattttggatggtttccgtggtacataatttgctaggttttttttttttttcaattcaactataacttatttcacggcgaagcc
gi|14 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaaATA--GTTTTTTCAAT---A-ATTAGGCTT--CATTT-TAAAGC-----AGTT--TGTT-aa
gi|12 : aaatatctcgtaaaatatattttcaatttctttaaaaccattaaaACT-GGGGTCAAC-----AAGATTATATCCT---GCAGCCACTGGTTCGTTGTTGTTATGTA-C-TT-TCATTCTAAT-AAAT--AGGAAAAATTGACT---Ggca
gi|16 : gatcttaTGACAGGGCTTACATCCT-TTGCAGCCACTG--TCGTCCTTTTCATGCA-CTTCTTCA----Acgattcctgttgtgtatgtg
gi|13 : GACAAGGATTGCATCCT-TTGCAGTCACTG--TCTTCCTATTTATACA-C-TGCTCC----AAT-GACT--AG-------CGATTCCCTGT--A---------GTGTACATTTTGAA-TGG-TTTC----CGTG-GT-ATATAATAt
gi|7 : c---------GTGTACATTTGG-T-TA---------CTGTG------GTAATGTAATAATTTGCT--GGTT-TTTTTTCTTT--AAATTCAACTAAAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Unaligned ( gi|15 ): ATTTTTTAAAGCATGATTTAACTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTGTA
Alignments
lowQualScore : 111111 1 111 77777777777777 111 222222 1 3333333333333 1 11111 111 1111 1111 7777777777777777777777777777 333333333333333 6666666666 33333333333 22
lowQualScore : 1 999999 55 4 2 0 2 66 999 1 5 3 6 1 8 00000000000000 8 8 0 000 777777 7777 3 3 8 1 9999999999999 3 77 11111 1 222 3 7777 1 5 888 1 6666 2222 888 77 0 5555555555555555555555555555 0 000000000000000 2222222222 3 55555555555 33 4 1
lowQualScore : . ...... .. . . . . .. ... . . . . . . .............. . . . ... ...... .... . . . . ............. . .. ..... . ... . .... . . ... . .... .... ... .. . ............................ . ............... .......... . ........... .. . .
lowQualScore : 4 222222 33 0 6 2 3 99 444 7 7 8 4 0 8 44444444444444 0 0 8 222 444444 2222 2 2 0 4 0000000000000 2 33 66666 7 111 0 9999 0 0 888 0 7777 3333 999 99 7 3333333333333333333333333333 8 000000000000000 2222222222 8 88888888888 88 0 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAACAATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----GGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTT---CTCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGGATTTCC---CGTGGT-------GTAATATAATAATTTGCT-G----CTTAGTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATNATAAGGCTTCATTTTAAAACAATTCATGTT-CAAAACACAT-TTATACGGT-ATGNTCCAAGTTANTNAAA--AC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----GGCCGT---TAACTGGACC-GGGGTCAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTTATGNA-CTT---CTCNAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGG-TTTCC---CGTGGT-----C-GTAATATAATAATTTGCT-G----NTT--TTTTTCTTT--AAATTCAACTANAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAACAATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTAGCAT-CAGCATTTA-TG--CACTGAAGTGCCGTTT-CC-AGTA-----ACTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAG-CACT----TCTTTC-TTTCATGGA-CTC---CTCAAACCA-AA-T--AG-G-AAA--TGAAT-G---------------TCAA---------GTGTA-A-TTTG-T-TGGATTTCTTTATGTATT-----CTGTAATATAATAATTTGCT-G----CTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAACCATTC-TGGT--ACAACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGTCAA----CAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAA-TA-AA-T--AG-GAAAAATTGACTGggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTG---CTCCAA-TG-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAA-TGG-TTT-C---CGTGGT----------ATATAATAcgattcctgttgtgtatgtg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGCAGTT--TGTT-
gi|16 : aaatatctcgtaaaatatattttcaatttctttaaaaccGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTT---CTTCAA-gca
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAACAATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATT--AA--AC---------ACCTT-GTC-C-GCGT-CAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTT---CTCCAA-CGAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTG-GATGG-TTT-C---CGTGGT----------AC---ATAATTTGCT-AGGTTTTT--TTTTTTTTT--CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAACAATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAAG-AC-GTTAATAGACCTT-GTC-TAGCAT-CAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTC---CTCAAA-CA-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG-T-TGGATTTCT---CTTTATGTATAT-GTAATATAATAATTTGCT-G----CTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA-GACCCATATT-----ACACA---------GT-ATAATCCATATTATTCAAA--AC-----------CTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCAT---CTCCAA-TG-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAATGATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TT-GTC-CAGT-----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AGcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAGAATTCATGTA-CAAAACATATAATACACAGT-taatatatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CAT---CTCCAA-TG-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTTGG-T-TA------C---TGTGGT---------AATGTAATAATTTGCTGG----TTT--TTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAACAATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAACAATTCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Unaligned ( gi|15 ): ATTTTTTAAAGCATGATTTAACTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTGTA
Alignments
lowQualScore : 1111111 111 777777777777777 1111 1 222222 11 3333333333333 1 111 111 1111 1111 7777777777777777777777777777 1111 4444444444444444444444444 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 66 999 1 5 3 6 1 555555555555555 8 3333 1 777777 7777 3 3 11 1 9999999999999 3 77 222 3 1 222 0 7777 1 5 888 888 2222 5 77 5555555555555555555555555555 4444 5555555555555555555555555 0 2 22 88 1
lowQualScore : . . ....... .. . . . . . .. ... . . . . . ............... . .... . ...... .... . . .. . ............. . .. ... . . ... . .... . . ... ... .... . .. ............................ .... ......................... . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 99 444 7 7 2 4 0 222222222222222 0 2222 4 444444 2222 2 2 22 4 0000000000000 2 33 888 7 7 111 7 9999 0 0 888 333 3333 7 99 3333333333333333333333333333 2222 0000000000000000000000000 0 5 22 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CA-GCGTCAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-TTGGAT--TTCCCT-TGTG---GT--GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CA-GCGTCAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----GGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-TTGGAT--TTCCC---GTG---GT--GTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTA-GCATCAGCATTTA-TG--CACTGAAGTGCCGTTTCC--AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAGC-ACT----TCTTTCTTT-CATGGA-CTCC---TCAAACCA-AA-T--AG-GAAA---TGAATG----------------TCAA---------GTGTA-ATTT-G-TTGGAT--TTCTTTATGTA---TTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTC-TGGT--ACAACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAAT-A-AA-T--AG-GAAAAATTGACTGggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAAT-G-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAATGG----TTTCC---GTG---GT-----ATATAATAcgattcctgttgtgtatgtg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT--TGTT-
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAAgta
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTTG-TC-C--GCGTCAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAAC-GAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATT----TTGGATGGTTTCC---GTG---GT--AC------ATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAAG-AC-GTTAATAGACCTTG-TC-TA-GCATCAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAAC-A-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG-TTGGAT--TTCTCTTTATGTATAT--GTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA--GACCCATATT-----ACACA---------GT-ATAATCCATATTATTCA----------AA---ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGG-TAAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAAT-G-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TTG-TC-CA-GT----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAAT-G-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTTGG-TTA--------CT---GTG---GT----AATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 1111111 11 111 777777777777777 1111 1 222222 1 3333333333333 1 111 111 1111 1111 7777777777777777777777777777 111 1 55555555555555555 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 2 44 1 444 0 5 3 6 1 555555555555555 8 3333 1 777777 7777 3 3 8 1 6666666666666 3 77 222 3 1 222 3 7777 1 5 888 6666 2222 888 77 0 5555555555555555555555555555 0 777 5 33333333333333333 0 1 00 88 1
lowQualScore : . . ....... .. . . . . . . .. . ... . . . . . ............... . .... . ...... .... . . . . ............. . .. ... . . ... . .... . . ... .... .... ... .. . ............................ . ... . ................. . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 7 99 4 777 4 7 2 4 0 222222222222222 0 2222 4 444444 2222 2 2 0 4 4444444444444 2 33 888 7 7 111 0 9999 0 0 888 7777 3333 999 99 7 3333333333333333333333333333 8 000 4 88888888888888888 0 0 88 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CA-GCGTCAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGGATTTC-CTT-TGTGT--GTGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CA-GCGTCAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGGATTTC-CCT-TGTG---GTGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTA-GCATCAGCATTTA-TG--CACTGAAGTGCCGTTT-CC-AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAG-CACT----TCTTTC-TTTCATGGA-CTCC---TCAAACCA-AA-T--AG-G-AAA--TGAAT-G---------------TCAA---------GTGTA-A-TTTG-T-TGGATTTC-TTTATGTATT-CTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGT---ACAACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAA-TA-AA-T--AG-GAAAAATTGACTGggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAA-TG-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAA-TGG-TTTC-C----GTG---GT---ATATAATAcgattcctgttgtgtatgtg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAA-gta
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTT-GTC-C--GCGTCAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAA-CGAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTG-GATGG-TTTC-C----GTG---GTAC------ATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAA-GAC-GTTAATAGACCTT-GTC-TA-GCATCAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAA-CA-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG-T-TGGATTTCTCTT-TATGTATATGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAA----------------AAGACCCATATTACACAGT-ATAATCCATATTATTCA----------AA---ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGG-TAAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAA-TG-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TT-GTC-CA-GT----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAA-TG-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTTGG-T-TA---------C-TGTG---GT--AATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 1111111 111 88888888888888 111 222222 11 3333333333333 1 111 111 1111 1111 7777777777777777777777777777 111 1 6666666666666666 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 2 77 1 444 0 5 3 6 1 44444444444444 8 8 0 000 777777 7777 3 3 11 1 6666666666666 3 77 222 3 1 222 0 7777 1 5 888 888 2222 5 77 5555555555555555555555555555 5 777 5 2222222222222222 0 0 1 00 88 1
lowQualScore : . . ....... .. . . . . . . .. . ... . . . . . .............. . . . ... ...... .... . . .. . ............. . .. ... . . ... . .... . . ... ... .... . .. ............................ . ... . ................ . . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 7 00 4 777 4 7 2 4 0 22222222222222 0 0 8 222 444444 2222 2 2 22 4 4444444444444 2 33 888 7 7 111 7 9999 0 0 888 333 3333 7 99 3333333333333333333333333333 6 000 4 4444444444444444 8 0 0 88 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGGATTTC-CTT--TGTGTAT---GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGGATTTC-CTT--TGTGTGT---GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTAGCAT-CAGCATTTA-TG--CACTGAAGTGCCGTTTCC--AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAGC-ACT----TCTTTCTTT-CATGGA-CTCC---TCAAACCA-AA-T--AG-GAAA---TGAATG----------------TCAA---------GTGTA-ATTT-G-T-TGGATTTC--TT--TATGTATTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGTA-C--AACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAAT-A-AA-T--AG-GAAAAATTGACTGggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAAT-G-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAA-TGG-TTTC-C-----GTG-GT------ATATAATAcgattcctgttgtgtatgtg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTG-TAtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAA
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTTG-TC-C-GCGT-CAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAAC-GAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTG-GATGG-TTTC-C-----GTG------GTA----CATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAAG-AC-GTTAATAGACCTTG-TC-TAGCAT-CAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAAC-A-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG-T-TGGATTTCTCTTTATGTATAT---GTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA----------------GACCCATATTACACAGT-ATAATCCATATTATTCAAA-------------ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAAT-G-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TTG-TC-CAGT-----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAAT-G-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTTGG-T-TA---------C--TGTG------GTAATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 1111111 111 88888888888888 111 222222 11 3333333333333 1 111 111 1111 1111 77777777777777777777777777777777777777777777777777777777777 111111 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 2 77 1 444 0 5 3 6 1 44444444444444 8 8 0 000 777777 7777 3 3 11 1 6666666666666 3 77 222 3 1 222 0 7777 1 5 888 888 2222 5 77 44444444444444444444444444444444444444444444444444444444444 6 777777 0 0 1 00 88 1
lowQualScore : . . ....... .. . . . . . . .. . ... . . . . . .............. . . . ... ...... .... . . .. . ............. . .. ... . . ... . .... . . ... ... .... . .. ........................................................... . ...... . . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 7 00 4 777 4 7 2 4 0 22222222222222 0 0 8 222 444444 2222 2 2 22 4 4444444444444 2 33 888 7 7 111 7 9999 0 0 888 333 3333 7 99 33333333333333333333333333333333333333333333333333333333333 7 000000 8 0 0 88 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGG-TTTC-CT-T--TGT-GTAT---GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGGATTTC-CT-T--TGT-GTAT---GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTAGCAT-CAGCATTTA-TG--CACTGAAGTGCCGTTTCC--AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAGC-ACT----TCTTTCTTT-CATGGA-CTCC---TCAAACCA-AA-T--AG-GAAA---TGAATG----------------TCAA---------GTGTA-ATTT-G-T-TGGATTTC--T-T--TAT-GTATTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGTA-C--AACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAAT-A-AA-T--AG-GAAAAATTGACTG-----------------CGA-----------------------------TTC-CTGT--TGT-GTAT---GTggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAAT-G-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAA-TGG-TTTC-C------GTGGTAT---ATAATAg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTG-TAtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAA
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTTG-TC-C-GCGT-CAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAAC-GAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTG-GATGG-TTTC-C------GT-G------GTA----CATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAAG-AC-GTTAATAGACCTTG-TC-TAGCAT-CAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAAC-A-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG-T-TGGATTTCTCT-TTATGT-ATAT---GTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA----------------GACCCATATTACACAGT-ATAATCCATATTATTCAAA-------------ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAAT-G-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TTG-TC-CAGT-----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAAT-G-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTTGG-T-TA----------C--TGT-G------GTAATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 1111111 111 88888888888888 111 222222 11 3333333333333 1 111 111 1111 1111 66666666666666666666666666666 33333333333333333333 111111 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 2 77 1 444 0 5 3 6 1 44444444444444 8 8 0 000 777777 7777 3 3 11 1 6666666666666 3 77 222 3 1 222 0 7777 1 5 888 888 2222 5 77 55555555555555555555555555555 2 77777777777777777777 6 777777 0 0 1 00 88 1
lowQualScore : . . ....... .. . . . . . . .. . ... . . . . . .............. . . . ... ...... .... . . .. . ............. . .. ... . . ... . .... . . ... ... .... . .. ............................. . .................... . ...... . . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 7 00 4 777 4 7 2 4 0 22222222222222 0 0 8 222 444444 2222 2 2 22 4 4444444444444 2 33 888 7 7 111 7 9999 0 0 888 333 3333 7 99 77777777777777777777777777777 5 88888888888888888888 7 000000 8 0 0 88 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG---TGG-TTTC-CT-T--TGT-GTAT---GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAAG-AC-GTTAA---ACCTTG-TC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAAC-G-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG-T-TGG-TTTC-CT-T--TGT-GTAT---GTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTAGCAT-CAGCATTTA-TG--CACTGAAGTGCCGTTTCC--AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAGC-ACT----TCTTTCTTT-CATGGA-CTCC---TCAAACCA-AA-T--AG-GAAA---TGAATG----------------TCAA---------GTGTA-ATTT-G-T-TGG-ATTT-CT-T--TAT-GTATTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGTA-C--AACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAAT-A-AA-T--AG-GAAAAATTGACTG-----------------CGA-----------------------------TTC-CTGT--TGT-GTAT---GTggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAAT-G-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAA-TGG-TTTC-C------GTGGTAT---ATAATAg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTG-TAtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAA
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTTG-TC-C-GCGT-CAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAAC-GAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTG-GATGG-TTTC-C------GT-G------GTA----CATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAAG-AC-GTTAATAGACCTTG-TC-TAGCAT-CAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAAC-A-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG-T-TGGATTTCTCT-TTATGT-ATAT---GTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA----------------GACCCATATTACACAGT-ATAATCCATATTATTCAAA-------------ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAAT-G-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TTG-TC-CAGT-----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAAT-G-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTT------GG-TTAC-------TGT-G------GTAATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 1111111 111 88888888888888 111 222222 1 3333333333333 1 111 111 1111 1111 6666666666666666666666666666666666666666666666666666666666 11111 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 2 77 1 444 0 5 3 6 1 44444444444444 8 8 0 000 777777 7777 3 3 8 1 6666666666666 3 77 222 3 1 222 3 7777 1 5 888 6666 2222 888 77 0 2222222222222222222222222222222222222222222222222222222222 6 88888 0 0 1 00 88 1
lowQualScore : . . ....... .. . . . . . . .. . ... . . . . . .............. . . . ... ...... .... . . . . ............. . .. ... . . ... . .... . . ... .... .... ... .. . .......................................................... . ..... . . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 7 00 4 777 4 7 2 4 0 22222222222222 0 0 8 222 444444 2222 2 2 0 4 4444444444444 2 33 888 7 7 111 0 9999 0 0 888 7777 3333 999 99 7 0000000000000000000000000000000000000000000000000000000000 7 00000 8 0 0 88 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTAGCAT-CAGCATTTA-TG--CACTGAAGTGCCGTTT-CC-AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAG-CACT----TCTTTC-TTTCATGGA-CTCC---TCAAACCA-AA-T--AG-G-AAA--TGAAT-G---------------TCAA---------GTGTA-ATTTGT--T--GGATTT-CT-T--TAT-GTATTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGTA-C--AACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAA-TA-AA-T--AG-GAAAAATTGACTG-----------------CGA-----------------------------TTC-CTGT--TGT-GTA---TGTggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAA-TG-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAAT--GGTTTC-C------GTGGTA---TATAATAg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTG-TAtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAA-
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTT-GTC-C-GCGT-CAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAA-CGAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTGGAT--GGTTTC-C------GT-G------GTA----CATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAA-GAC-GTTAATAGACCTT-GTC-TAGCAT-CAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAA-CA-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG--TTGGATTTCTCT-TTATGT-ATA---TGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA----------------GACCCATATTACACAGT-ATAATCCATATTATTCAAA-------------ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAA-TG-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TT-GTC-CAGT-----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAA-TG-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTT-------GGTTAC-------TGT-G------GTAATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 1111111 111 88888888888888 111 222222 1 3333333333333 1 111 111 1111 1111 6666666666666666666666666666666666666666666666666666666666 11111 1 11 11
lowQualScore : 4 0 8888888 55 3 1 6 2 3 2 77 1 444 0 5 3 6 1 44444444444444 8 8 0 000 777777 7777 3 3 8 1 6666666666666 3 77 222 3 1 222 3 7777 1 5 888 6666 2222 888 77 0 2222222222222222222222222222222222222222222222222222222222 6 88888 0 0 1 00 88 1
lowQualScore : . . ....... .. . . . . . . .. . ... . . . . . .............. . . . ... ...... .... . . . . ............. . .. ... . . ... . .... . . ... .... .... ... .. . .......................................................... . ..... . . . .. .. .
lowQualScore : 5 1 3333333 44 6 5 5 6 6 7 00 4 777 4 7 2 4 0 22222222222222 0 0 8 222 444444 2222 2 2 0 4 4444444444444 2 33 888 7 7 111 0 9999 0 0 888 7777 3333 999 99 7 0000000000000000000000000000000000000000000000000000000000 7 00000 8 0 0 88 88 0
consensus : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG-AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-TTATACGGTCATGCTCCAA-TTAACGAAAGGACAGTTAAG--ACCTTGGTCGTAGCAT-CAGCATTTA-TG--CACTGAAGTGCCGTTT-CC-AGTA----A-CTGT---TAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAG-CACT----TCTTTC-TTTCATGGA-CTCC---TCAAACCA-AA-T--AG-G-AAA--TGAAT-G---------------TCAA---------GTGTA-ATTTGT--T--GGATTT-CT-T--TAT-GTATTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCATG-------ATTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGTA-C--AACACA---TATACCGT-
gi|12 : cttgcatatgtaagagttatccatatcgtgtaatttACT-GGGGT----CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAA-TA-AA-T--AG-GAAAAATTGACTG-----------------CGA-----------------------------TTC-CTGT--TGT-GTA---TGTggt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTGC---TCCAA-TG-AC-T--AGCG---A--TTCCCTG---------------T--A---------GTGTACATTTTGAAT--GGTTTC-C------GTGGTA---TATAATAg
gi|14 : ATTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--ATTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTG-TAtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTTC---TTCAA-
gi|2 : tTTTTTA----AC-ATG--ATTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAAC-----TCATACG-------T---AGTAATTAAA----C---------ACCTT-GTC-C-GCGT-CAGTATTTA-------------------TTCCC-GGCA----GGAAGC---CAACT----T-GGG-----TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTTC---TCCAA-CGAAA-C--AG-TAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTGGAT--GGTTTC-C------GT-G------GTA----CATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTTt
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAATTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-TTATACGGT-ATGCTCCAAATTACTGAAA-GAC-GTTAATAGACCTT-GTC-TAGCAT-CAGCATTTAGTG--CACTGAAGTGCCGTTT-CC-AGTA----AGCTGT---TAACTGGACT-GGGGTTAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTCC---TCAAA-CA-AA-T--AG-GAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG--TTGGATTTCTCT-TTATGT-ATA---TGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAAAA----------------GACCCATATTACACAGT-ATAATCCATATTATTCAAA-------------ACCTT--TC-CATGGTTCAGTATTTAGAG---ACTGCAGTGCAGTTTCCCTGGCA----GG--------AACTAAACC-AGGGT-AAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCATC---TCCAA-TG-AA-CAGAG-AAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-AT-TA---T--A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-ATTTGCAGT-ATGTTCCAAGTTATTTAAA--AT-G----------TT-GTC-CAGT-----GTATGTAGCGACCAC--ATGTGCTGTTTTCT-GGGAAATGAACCGTCAATAACT-GACC-AG---TAATcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatTAATTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAATACACAGT-atatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggcaTGTA-CATC---TCCAA-TG-AAAG--AG-AAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTT-------GGTTAC-------TGT-G------GTAATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCATG-------ATTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAATTT-GG-AAAGTTTTATCA---ATAAGGCTTCATTTTGAAAC-AATTCA
blockSeqs : G CATGTA AG T T G A G G TA A TAT . C G A AGACGTTAATAG . . GTT GCGACC TGAA C C T C AATGAACCGTCAA G T GTT C G TT C GGT T G CAT CGA CAG GA AT CAATTTCTTGCTAGGTTGTGTGTACATTTGGTTAC G TA A G TT GA A
blockSeqs : G CATGTA A . T A G . C A A TAA . A A G AATG . . GT GTGC TGCA A C . T GGAAGC A T GT C G TT T AG C . . TA AG CG . CGATTACTTGTTGTGTACATTTTGGATGGTTTCC . TA . C AG T T
blockSeqs : A CATTA A . T G A . C G C TT . T A C C . . AT GAG AT T T . C AGCTGT . T GT C G TT C G C . . TG T TA . TCAAGTGTACATTTTGTTGGATTTCTCTTTA . TA . G T . A
blockSeqs : G CATG G . A G T . T A A TA . . G T A . . . . . . . . G GG . C T T A AG C G G . . CA T GA . TAGTGTACATTTTGAATGGTTTCC . .
blockSeqs : G CATG G . T T G . C T A T . C . . G . C G G . . TG C AA . CGATTCCTGT . .
blockSeqs : . . A . T G A . T A . . . . . . . T . . TG T AA .
blockSeqs : . . A . C A A . T A T . .
blockSeqs : G . T G G . . .
blockSeqs : . . T . G .
blockSeqs : . A . . .
blockSeqCons : CATG*** TA* AG************ GG**** GGGC********* T* GT* TT* G*** TG** NA* TA***
originalCons : TTTTTAGCATAC-ATGTAATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-TTATACGGT-ATGCTCCAAGTTATTNAAA-GAC-GTTAA---ACCTT-GTC-CAGCGT-CAGTATTTAGCG--CACTGAAGTGCCGTTTCCC-GGCA----AGCCGT---TAACTGGACC-GGGGTTAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTTC---TCCAA-CG-AA-T--AG-GAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
finalCons : TTTTTAGCATACATG---ATTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACATA-TATACGGT-ATGCTCCAAGTTATTNAAAG------------ACCTT-GTC-CAGCGT-CAGTATTTAGG----ACTGAAGTGCCGTTTCCC-GGCAGGGC---------TAACTGGACT-GGGGT-AATCGACAAGGATTGCATCCTTT-GCAGCCACTG---TCTTCCTTTTCATGNA-CTTC---TCCAATG--AA-T--AGNA-AAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTCAAAACCATAAACATACACGACACATAATATGCATACCGATGTGTTCTAAATTATTCAAAAACTTGCCCAGTGCATGGGTGTTTTCTGGCAGACGAACCTTCATTAATT
Alignments
lowQualScore : 11 111 11111 1 55555555555555555555555 44444 33333 22222 111 1111 1111 6666666666666666666666666666666666666666666666666666666666 11111 1 11 11
lowQualScore : 4 0 5 4 11 4 4 3 1 8 2 3 1 66 222 44444 0 5 3 0 7 33333333333333333333333 1 6 7777 7 00000 999 3 3 8 0 0 55555 66 11111 3 1 222 3 7777 1 5 888 5 5 2222 66 77 0 2222222222222222222222222222222222222222222222222222222222 6 88888 0 0 1 00 88 1
lowQualScore : . . . . .. . . . . . . . . .. ... ..... . . . . . ....................... . . .... . ..... ... . . . . . ..... .. ..... . . ... . .... . . ... . . .... .. .. . .......................................................... . ..... . . . .. .. .
lowQualScore : 5 1 1 4 00 0 0 6 5 8 6 3 4 44 555 33333 4 7 7 5 5 88888888888888888888888 0 7 8888 8 00000 222 2 2 0 2 2 00000 88 00000 7 7 111 0 9999 0 0 888 0 7 3333 00 99 7 0000000000000000000000000000000000000000000000000000000000 7 00000 8 0 0 88 88 0
consensus : TTTTTAGCATAC-ATG--A-TTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTA-CAAAACACAT-A-TATA-----CGGT-ATGCTCCAAATTATTNA----------A----------AGACCTT-GTC-CA-GCGTCAGTATTTA-G-G-ACCGNA-GTGCCGTTTCCC-GGCAGG--GTTAACTGGACTGGGG--TAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTT---CTCCAA-CG-AA-T--AGGAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
Reference ( family-3870 ) : TTTTTAGCATAC-ATG--A-TTT-GA-ATAGTTTTATCAATGATAAGGCTTCATTTTAAAAC-AATTCACGTN-CAAAACACAT-A-TATA-----CGGT-ATGCTCCAAGTTATTNA----------A----------AGACCTT-GTC-CA-GCGTCAGTATTTA-G-G-ACTGAA-GTGCCGTTTCCC-GGCAGG--GCTAACTGGACTGGGG--TAATCGACAAGGATTGCATCCT-TTGCAGCCACT-G--TCTTCCTTTTCATGNA-CTT---CTCCAA-TG-AA-T--AGNAAAA--TGACTGG---------------TCGA---------GTGTACATTTTG--T--GGTTTC-CT-T--TGT-GTA---TGTAATATAATAATTTGCT-GNTTANTTTTTCTTTG-AAATTCANCTAAAACTT
gi|1 : TTTTTAGCATACCATG--AATTT-GA-A-AGTTTTTCCAAT---AAGGGCTCATTT-AAAAC-AATTCATCTT-CAAAACACAT-T-TATA-----CGGTCATGCTCCAA-TTAACGAAAGGACAGTTA----------AGACCTTGGTCGTA-GCATCAGCATTTATG-C-ACTGAA-GTGCCGTTTCCA-GTAACT--GTTAACTGGACTAGGGGTTAATTGACAAAACTTGCATCCTGTTGCAG-CACT----TCTTTC-TTTCATGGA-CTC---CTCAAACCA-AA-T--AGG-AAA--TGAAT-G---------------TCAA---------GTGTA-ATTTGT--T--GGATTT-CT-T--TAT-GTATTCTGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTG-AAATTCATCT
gi|10 : atatgtaagatttatcccttcctttatgtgaaattaatttttaaaaattatttgtttgTTTTTAGCAT-----G--A-TTCAGATATAGTTTTATCAATGATAAGACTTCATTTTTAAAC-CATTCTGGTA-C--AACACAT-A-TA
gi|11 : cttgcatatgtaagagttatccatatcgtgtaatttTTCAAAAC-CATAAACATA-CACGACACATAA-TATGCATACCGAT-GTGTTCTAAATTATTCA----------A----------AAA-CTT-GCC-CA-GTGccgtggt
gi|12 : cACTGGGG--T---CAACAAG-ATTATATCCT---GCAGCCACT-GGTTCGTTGTTGTTATGTA-CTTTCATTCTAA-TA-AA-T--AGGAAAAATTGACTG-----------------CGA-----------------------------TTC-CTGT--TGT-GTA---TGTcatgggtgttttctggcagacgaaccttcattaatt
gi|13 : gatcttaCGACAAGGATTGCATCCT-TTGCAGTCACT-G--TCTTCCTATTTATACA-CTG---CTCCAA-TG-AC-T--AGC--GA--TTCCCTG---------------T--A---------GTGTACATTTTGAAT--GGTTTC-C------GTGGTA---TATAATAg
gi|14 : --A-TTA-AA-ATAGTTTTTTCAATAATTAGGCTTCATTTTAAAGC-AGTT
gi|15 : aaatatctcgtaaaatatattttcaatttctttaaaaccTTTTTA--AAGC-ATG--A-TTT-AA-CTAGTCTCATCAATGGTAAGAAGTCGTTTTAAGACGAATTTACGTG-TAtgttgca
gi|16 : atGACAGGGCTTACATCCT-TTGCAGCCACT-G--TCGTCCTTTTCATGCA-CTT---CTTCAA-T
gi|2 : tTTTTTA----AC-ATG--A-TTT-GA-AAGGTTTTATCAATGATAAGTCTTCAATTTAAAAC-AATTCACGCA-CAAAACTCAT-A-CGTA-------GT-A-----------ATT-A----------A----------ACACCTT-GTC-C--GCGTCAGTATTTA-------------------TTCCC-GGCAGGAAGCCAACT----TGGG------TCGATGAGGATTGCAT--------------T-G--TCTTCCTTTTTATGGA-CTT---CTCCAA-CGAAA-C--AGTAAAA--TGACTGG----------------CGATTACTTGTTGTGTACATTTTGGAT--GGTTTC-C------GT-G------GTA----CATAATTTGCTAGGTTTTTTTTTTTTTT-CAATTCAACTATAACTT
gi|3 : tgtgtatgtaagagttatcattcctatatttccaattcttgatataaaataccctgtaaaacgTTTTTAGCATAC-ATGTAA-TTT-GG-ATAGTTTTATCAATTA-AAGGCTTCATTTTGAAAC-AATTCATGTT-CAAAACACAT-T-TATA-----CGGT-ATGCTCCAAATTACTGA----------AAGACGTTAATAGACCTT-GTC-TA-GCATCAGCATTTA-GTGCACTGAA-GTGCCGTTT-CC-AGTAAGCTGTTAACTGGACTGGGGT-TAATTGACAAAAACTGCATCCT-TTGCAGCCACT----TCTTTCTTTTCATGGA-CTC---CTCAAA-CA-AA-T--AGGAAAA--TGAATGG---------------TCAA---------GTGTACATTTTG--TTGGATTTCTCT-TTATGT-ATA---TGTAATATAATAATTTGCT-GCTTAGTTTTTCTTTGAAAATTCATCTGAAACTTatttcacggcgaagcc
gi|4 : A-ATAGTTTTAACATTGATAAGACAT-ATTTTAA----------------AAGACCCAT-ATTACA-----CAGT-ATAATCCATATTATTCA----------A----------A-ACCTT--TC-CATGGTTCAGTATTTA-GAG-ACTGCA-GTGCAGTTTCCCTGGCAGG-----AACTAAACCAGGG--TAAT----AAAGATTACATCCT-AGGCAGCCAATAG--TCTTCCTTTTTATGTAGCAT---CTCCAA-TG-AA-CAGAGAAAAA--TGACTGG---------------
gi|5 : tgtaagtttatcttttcctttattttcaatacttgatgtaaaaaatatttcaattttttttaaaagctgctttaaTTTTTAAC-CAC-ATT--A-T----A-ACAGTTTTATCAAT--TAAG-CTTCACTTTAAAAT-GATACACATTACAACACACAT-A-TTTG-----CAGT-ATGTTCCAAGTTATTTA----------A----------A-ATGTT-GTC-CA-GT----GTATGTA-GCG-ACCACATGTGCTGTTTTCT-GGcaatttcttgttaggtaa
gi|6 : aaaaaatatgccaatC-ATA--A-TTT-AA-ATAGTTCTATCAATAATAAGACTTTA-TTAAAAAG-AATTCATGTA-CAAAACATATAA-TACA-----CAGT-gaaatgaaccgtcaataactgaccagtaatatatgataataatggaaact
gi|7 : cttttatgtgtcagagttatctttcctttatttacaataatttaggtaaaactatcttgtaattttcgttttcaatgtctttcggTGTA-CAT---CTCCAA-TG-AAAG--AGAAAAA--TGCCTGGCAATTTCTTGCTAGGTTGT---------GTGTACATTT-------GGTTAC-------TGT-G------GTAATGTAATAATTTGCT-GGTT-TTTTTTCTTT--AAATTCAACTAAAA
gi|8 : TCTTTAGCAT-----G--A-TTG-AA-ATAGTTTTATCAATGATAAAGATTCATTTTAAAAC-AATTCATGTA-CAAAAatctcttttcgtggagcagc
gi|9 : cttggatatataaatgttgactttctttatttccaaaatatcttactaaataatattttcatttTTTTTAGCATAC-ATGTAA-TTT-GG-AAAGTTTTATCAAT---AAGGCTTCATTTTGAAAC-AATTCA