lowQualScore : 1111111 111111111111111111 1111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 22 222 2 44 1111111 1 2 11 111111111111111111 444 1 4444444444 1 1 11 1111 1111111111 4444444444444444444444444444444444444 11 2 444444 1111111 2222222222222222 11 111 11 11 1 1111111 8888888888888888 2222 11 11111 1111111111111111111111
lowQualScore : 11 999 0 6 6 6 66 5555555 3 3 6 6 2 3 5 3 7 6 7 33 6 888888888888888888 000 3 6 8 0 0 5 77 4 2 0 8888888888 0 8 99 5 5 6 2 3 6 55 5555 5 5 5 8888888888 5 7777777777777777777777777777777777777 33 4 66 000000 0 6666666 4 5555555555555555 22 0 222 11 11 5 5 5 7 7777777 5 5 888 5 5 5 4444444444444444 3 1111 5 6 00 88888 7777777777777777777777
lowQualScore : .. ... . . . . .. ....... . . . . . . . . . . . .. . .................. ... . . . . . . .. . . . .......... . . .. . . . . . . .. .... . . . .......... . ..................................... .. . .. ...... . ....... . ................ .. . ... .. .. . . . . ....... . . ... . . . ................ . .... . . .. ..... ......................
lowQualScore : 55 000 0 0 0 0 00 7777777 2 2 0 0 0 2 0 2 8 0 0 88 0 000000000000000000 000 2 8 0 8 8 4 44 8 8 8 0000000000 6 0 88 7 7 7 0 3 7 88 9999 7 7 7 0000000000 7 4444444444444444444444444444444444444 77 4 99 555555 1 2222222 4 3333333333333333 66 4 999 99 99 0 0 0 1 5555555 0 0 888 0 0 0 6666666666666666 6 6666 0 0 66 77777 2222222222222222222222
consensus : NNGACAATAGATCATTTGTTTTCAGAATGTTGNTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATCT-AAAAATGC------TATATTTA--TACAANCAAGTTCACCACTT-CAAAGAAGCTAAATTTTGAGAACCTAAAAACGATTGTAGTCAATAGACTATACATTGAAAAT---------TTTATTTTGCTGAA-AAACTG-CAAG-TA-CAAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A--CAAAAN---ATTG-AACATT-CGTCA-TGA----G----TTTCTC-CCTAACAT-----CT-------------TACA--TC-TTA-A-ATCT-ATCTTTCTTCAAATCT--CTCCC-TTTTTCTTCT-------AT-AAAA--------AACA----CAT-CAAAACTTTCACATACATATTC--TGTATA--TC-A-TTTG-TATG-CATGTAA-TC-GAGAA---TAAG-T-TTTGTG-CATAT--TTAT-G--------TTTTTTCTGTTTTTG-ATTTG-TGTAAGAATGCTATN-GATGTAT---G-TGAAAATNA-AT------T---AA----CAAAAAAAAAT
Reference ( gi|1 ) : TAGACAATAGATCATTTATTTTCAGAATGTC-TTTTAA-TCAAAGAGTTTTGGATCGAGATAGAAAG-TGGTTAAAATCTACCTGTACATTAAATATTGACATAAACTTAAACAGGAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATGAAATCGTCTAGAAAAATCTCATAATTCT--AACAATTTTAAAAATACATGTACTATATTTAAATACAAACAAGTTCACCACTT-CAAAGAAGCTAAGTTTTGAGAACCTAAAAAAGAATGTAATCAATAGACTATATATTGAAAAA---------TTTATTTTGCTGAA-AAACTG-TAAA-TA-CAAGGAAT-TTAACAACTGTTTGAAAAATGTTCT-A--CAAAAT---ATTG-AACATT-CATCA-TAA----G----CTTCTC-TCTAACAT-----CT-------------TA-------------ACCT-ATCTTTCGTCAAATCT--CTCCCATTTTTCTTCT-------AT-AAAA--------AACC----CAA-CAAAACTTTCACATATATATTC--TGTATA--TC-A-TTTG-TGTA-CATATAA-TT-GAGAA---TAAG-T-TTTGTG-CATATAATTAT-G---GGGTTTTTTTTCTGTTTTTG-GTTTG-TGTAAGAATGATATT-GATGTAT---A-TGAAAATCA-AT---TT-T---AA---CCAAAAAAAAATCATAGTAAA
gi|15 : GACAATAGATCATT-GTTTTCAGAATGTT-GTTTAA-TTAAAGAGCTTTGGATTG
gi|14 : GACAATAGATCATTTGTTTTCAGAATGTTGTTTTAATTTAAAGAGCTTTGGAT
gi|2 : GAGATAGAAAACTGGTTAAAATCTAC------ATCAGATATTGATATAAACTTAAGCAGAAAATCAATTTTGTTTGGTAAAATAAATAATTTTAGATCAAATCGTCTAGAAAA-TCTTCTAATCCT--AATAATTT-AAAAATAC------TATATTCA--TACAAACAAGTTCACCACTT-CAAAATAGCTAAATTTTGAGAATCTAAAAACTATTGTAGTCTATAGACTATACATTGAAAA----------TTTATTTTGCCGAA-AAACTG-GAAA-TA-CAAGGAAT-GTAATAAATGTTTGAAAAATGTTTT-A--CTAAAA---ATTG-AACATT-CGTCA-TGA----G----TTTCTC-CCCAACAT-----CT-------------TACATTTCTTTAAATATCT-GTCTTCTTTCAAATCT--C-CTCGTTT--CCTCT-------AT-AAAA--------A-CA----CAC-CAAAACTTTCACATGCATATTC--TGTATA--TCAA-TTTG-TATG-CATGCAA-TT-TAGAA---TAAG-T-TTTGTG-CACAT--TTAT-G--------TTTTTGCTG-TTTTG-ATTTG-TGTAAGAATGCTATA-GATt
gi|4 : tAGATAGAAAACTGGTTAAAATCTAT------ATTGA-TATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTT-CAAAGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAATAAACTATACATTGAAAAT---------TTTATTTTGCTG-A-AAACTG-C-AA-TA-CAAAGA------------GTTTGACAAATGTTTT-A--CAAAAA---ATTG-AACATT-CA-CA-TGA----G----TTTCTC-CC
gi|7 : ATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAAT-CT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTT-CAAAGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAATAAACTATACATTGAAAAT---------TTTATTTTGCTGAA-AAACTG-CAAG-TA-CAAAG
gi|3 : gaTAAATAT-GATATAAACTTAAGCATGAATTCAATTTTGTTTGGTAAA--GAATAACTTTCGATCAAATCATCT--AAAGATCTTATAATTCTTGAATAA--TTAAAA-------TACTACATTTAAA-AC-AGCGAGTTCACCACTTCCACAGAAGCTAAG-TTTGAGAACCT-AAAAAGAATGTAATTAATAGACTATACATTCAA-------------TTATTTTGCTGAAGAAACT--TAAGTTACCAAGGAATATTAACAAGTGTTTGAAAAAT-TTTT-AT-TAAAAA---ATTGAAACATT-TGTC--TGA----G----TTTCTC-CCCAACAT-----CTTACACTCATTAAATA-------------ATCTAATCTTCCTTCAAATTT--CCC----TTTTCATCT-------AT--AAG--------AACA----CAT-CAAAACTTTCTCA----------------A--TT-A-TTTGTTTTA-CATG-AA-TA-GAGAA---TTAG-T-TCCGTG-CATAT
gi|8 : ACCCTTT-CCAAGAAGTTAAGTTTTGAAAACCTAAAACAGAA------CAGTCGATTTTA-AGTAAAAAAAAAAAAATTTTTTTTTTATTG-A-AAATTGTTAAG-TA-CAACGAAT-TTAACAAATGTTTGAAAATTG-TCT-AACCAAAATAGAATTG-AACATT-CATCA--AATCTTG----CGTCTC-TCTAA-A---------------------TA-------------A-CT-GTCTTCC------TTT--CACC------TCTTCT-------AT-AAAA--------GACA----TAA-CAt
gi|5 : AAA-TA-CAAGGAAT-TTAACAATTGTTTAAAAAATGTTTTAA--CAAAAT---ATTG-AACATT-CATCATTAA----G----TTTCTCGTCTAACATTACACCT-------------CATTAAAAC------ATCTAATCTTTC-TTAAATCT--CTCTC-CTTTTCTTC--------AT-AAAA--------AAACAAAACAA--AAAACTTTCACATACATATTCA-TGTATACGTC-ATTTTG-TATA-CATGTAA-TCGGAGAA---TAAGAT-TTTGTG-CATATATCTAT-G---------TTTTTCTGTTT----GT----CGTAAGAATGATATT-GAT---------CAAGAATGAGAC---TTGTGGAAA---ACAAAAAAAAAttttgaatgcatgtgtgatcgttttg
gi|6 : A-TA-CAAGGAAT-TTAACAATTGTTTAAAAAATGTTTT-A--CAAAAT---ATTG-AACATT-CATCA-TAA----G----TTTCTC-TCTAACAT-----TT-------------TACACCTCATTAAACATCT-ATCTTTCTTCAAATCT--CTCC---TTTTCTTCT-------ATAAAAA--------AAAA----CAA-CAAAACTTTCACATACATATTCATTGTATA--TC-A-TTTG-TATA-CATGTAA-TC-GAGAA---TAAG-T-TTTGTG-CATAT--TTAT-G--------TTTTTTCTGTTTTTG--------GTAAGAATGATATT-GATGTGT---G-TGAAAA----------------------CAAAAAAAAAa
gi|11 : AAAAA---AT---AACATTGCATCA-TGA----GAGAGTTTCTC-CCTAACAT-----CT-------------TACATCTCATTAGATATTT-ATCTTTCTTCAAATCG--C----ATCTTTCTTCT-------CT-AAAA--------AACA----CAT-CAAAA---TCA-ATAAATATa
gi|9 : attactgattatggttttataaaAATAT-----CT----------------------------GTCT--TCTTT--TCAAATCTTCCTTTCCTTTTTTTTTTTTTCTTCAT-AAAATTTTTTTTAACA----CATTCAAAACTT-CACA---ATATTT--CGTATA--TC-AATTTG-GATG------AA-TT-GAGAA---TAAG-TCTTTGTGTCATAT--TTATTG---GGGGTTTTTTTCGGATTTT-----TG-TGTAAGAATGCTATA-GATGTAT---GTTGGAAATCA-A------------------AAAAAAAAAatca
gi|10 : ttgaTCTTTC---AAAGAT--ATCCT-CTTTTCTTCT-------AT-AAAA--------TACA----CAT-CCAAACTTTCACAGATAT--TC--TGTATA--TC-AATTTG-TATG------AA-TT-GAGAA---CAAG-T-TTTGTG-CATAT--TTAT-GTTTGGGTTTTTT----AATTTTG-ACTTG-TGTAAGAATGCTATA-GATATAT---G-TGAAAACGA-AT-----------------AAAAAAAAATa
gi|12 : -AAAA--------AACA----CAT-CAAAACTTTC---CATATATTC--TGTATAT-TC-A-ATTG-TAC--CATGTAA-TT-GAAGATATTAAG-T-TTTATG--GCATAAATA------------TTTTTTTATTATTGAATTTG-TGTAAGAATGCTATCAGATGTATTGAA-TAAAAAatt
gi|13 : TATTC--TGTGCA--TC-A-TTTG-TATAGCATGTGATTT-GAGAA---AGAC-T-TTTGTC-TAGATGGTCA--G--------TTTTTTCTGTTTTTG---TTGTTGTGATAATGCT-----ATGTAT---G-TGAAAATCA-ATAGAAC-T---AATCCCCAAAAAAatataa
gi|16 : tTTCTGTTTTTG-GTTTG-TGTAAGAATGATATT-GATGTAT---A-
Alignments
lowQualScore : 22 111 222222 11 3333 222222 11 1111 111 1 1111 7777777777777777777777 1 2222222 1111111 11111111 111 11 11111111111 1111 111 666666666666666666666666
lowQualScore : 7 00 000 2 888888 0 0 0 8 3 11 4444 333333 11 1 1 6 6 7 4444 666 6 77 4 5 5 5 3 5 0 9999 888 5 5 2 5 0000 5 0 1111111111111111111111 66 0 5 1 55 4 2222222 4444444 88 44444444 66 55 111 99 99 888 4 888 3 4 77 777 4 4 4 4 66 22 77777777777 0000 7 555 4 4 1 77 88 5 33 888888888888888888888888
lowQualScore : . .. ... . ...... . . . . . .. .... ...... .. . . . . . .... ... . .. . . . . . . . .... ... . . . . .... . . ...................... .. . . . .. . ....... ....... .. ........ .. .. ... .. .. ... . ... . . .. ... . . . . .. .. ........... .... . ... . . . .. .. . .. ........................
lowQualScore : 3 77 777 5 888888 8 8 8 0 8 00 4444 000000 00 4 0 7 7 8 2222 777 7 99 0 0 0 7 0 0 0 8888 888 0 0 0 0 6666 0 1 5555555555555555555555 99 0 0 1 77 4 7777777 4444444 88 55555555 99 55 000 55 55 555 4 222 4 4 99 888 4 4 4 4 11 22 00000000000 6666 4 777 4 4 1 00 77 7 33 666666666666666666666666
consensus : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-CAAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACA-T---C---T---TA---AA--AT--CT-ATCTT-TCTTCAAATCTC-TC---CC-CTTTTCTTCT-------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--TC-A-TTTG-TAT-GCATGTAA-TT-GAGAA---TAAG-T-TTTGT-G-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTG-ATTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
Reference ( family-3861 ) : NNGACAATAGATCATTTGTTTTCAGAATGTTGNTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATCT-AAAAATGC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAATTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGC-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-CAAAA---NA---TTG-AACATT-CGTCA-TGAG----TTTCTC-CCTAACATCTTACA-T---C---T---TA---A---AT--CT-ATCTT-TCTTCAAATCTC-TC---CC-TTTTTCTTCT-------AT-AAAA--------AACACAT-C--AAAACTTTCACATACATATTC--TGTATA--TC-A-TTTG-TAT-GCATGTAA-TC-GAGAA---TAAG-T-TTTGT-G-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTG-ATTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
gi|1 : GACAATAGATCATTTATTTTCAGAATGTC-TTTTAATC-AAAGAGTTTTGGATCGAGATAGAAAG-TGGTTAAAATCTACCTGTACATTAAATATTGACATAAACTTAAACAGGAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATGAAATCGTCTAGAAAAATCTCATAATTCT--AACAATTTTAAAAATACATGTACTATATTTAAATACAAACAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAAAGAATGTAATCAAT----AGACTATATATTGAAAA--ATTTATTTTGCTGAA-AAACTGT-AAAT-AC-AAGGAAT-TTAACAACTGTTTGAAAAATGTTCT-A-CAAAA---TA---TTG-AACATT-CATCA-TAAG----CTTCTC-TCTAACATCTT---------------------A---AC--CT-ATCTT-TCGTCAAATCTC-TC---CCATTTTTCTTCT-------AT-AAAA--------AACCCAA-C--AAAACTTTCACATATATATTC--TGTATA--TC-A-TTTG-TGT-ACATATAA-TT-GAGAA---TAAG-T-TTTGT-G-C--ATATAATTAT-----GGGGTTTT----TTTTCTGTTTTTG-GTTTG-T-GTAAGAATGATAT-TGATGTATA-TGAA-AATCA-ATTT-----T-------AAC---CAAAAAAAAAT
gi|10 : taTTCAAAGATA-TC---CT-CTTTTCTTCT-------AT-AAAA--------TACACAT-C--CAAACTTTCAC--AGATATTC--TGTATA--TCAA-TTTG-TAT-G-----AA-TT-GAGAA---CAAG-T-TTTGT-G-C--ATAT--TTAT-----G-----TTTGGGTTTTTTAATTTTG-ACTTG-T-GTAAGAATGCTAT-AGATATATG-TGAA-AACGA-A--T--------------------AAAAAAAAATcatagtaaa
gi|11 : tctGTTTT-A-TAAAA---AAAAAT---AACATTGCATCA-TGAGAGAGTTTCTC-CCTAACATCTTACA-T---C---T---CATT-AGATAT--TT-ATCTT-TCTTCAAATCGCATC--------TTTCTTCT-------CT-AAAA--------AACACAT-C--AAAA---TCA-ATAAATATatt
gi|12 : attactgattatg-AAAA--------AACACAT-C--AAAACTTTC-CAT--ATATTC--TGTATAT-TC-A-ATTG-TAC--CATGTAA-TT-GAAGATATTAAG-T-TTTATGG-C--ATA----AAT-----A-----TT----TTTT-TATTATTGAATTTG-T-GTAAGAATGCTATCAGATGTAT--TGAATAAAAA-A--TA----T-------AA----atca
gi|13 : TATTC--TGTGCA--TC-A-TTTG-TATAGCATGTGATTT-GAGAA---AGAC-T-TTTGT-C-T--AGATGGTCA------G-----TT----TTTTCTGTTTTTG---TTGTT-GTGATAATGCT-----ATGTATG-TGAA-AATCA-A--TAGAACT-------AATCCCCAAAAAA
gi|14 : tGACAATAGATCATTTGTTTTCAGAATGTTGTTTTAATTTAAAGAGCTTTGGATT
gi|15 : GACAATAGATCATT-GTTTTCAGAATGTTG-TTTAA-TTAAAGAGCTTTGGATTG
gi|16 : TTCTGTTTTTG-GTTTG-T-GTAAGAATGATAT-TGATGTAT
gi|2 : TGAGATAGAAAACTGGTTAAAATCTAC------ATCAGATATTGATATAAACTTAAGCAGAAAATCAATTTTGTTTGGTAAAATAAATAATTTTAGATCAAATCGTCTAGAAAA-TCTTCTAATCCT--AATAATTT-AAAAATAC------TATATTCA--TACAAACAAGTTCACCACTTCAA-AATAGCTAAATTTTGAGAATCTAAAAACTATTGTAGTCTAT----AGACTATACATTGAAAA---TTTATTTTGCCGAA-AAACTGG-AAAT-AC-AAGGAAT-GTAATAAATGTTTGAAAAATGTTTT-A-CTAAA---AA---TTG-AACATT-CGTCA-TGAG----TTTCTC-CCCAACATCTTACA-TTTCT---T---TA---AAT-AT--CT-GTCTT-CTTTCAAA--TC-TC---CT-CGTTTCCTCT-------AT--AAA--------AACACAC-C--AAAACTTTCACATGCATATTC--TGTATA--TCAA-TTTG-TAT-GCATGCAA-TT-TAGAA---TAAG-T-TTTGT-G-C--ACAT--TTAT-----G-----TT----TTTGCTG-TTTTG-ATTTG-T-GTAAGAATGCTAT-AGATa
gi|3 : TAAATAT-GATATAAACTTAAGCATGAATTCAATTTTGTTTGGTAAAG--AATAACTTTCGATCAAATCATCTA-AAGA-TCTTATAATTCTTGAATAATT---AAAATAC------TACATTTA--AAACAGCGAGTTCACCACTTCCACAGAAGCTAAGTTT-GAGAACCTAAAAA-GAATGTAATTAAT----AGACTATACATTCAA------TTATTTTGCTGAAGAAACT-T-AAGTTACCAAGGAATATTAACAAGTGTTTGAAAAAT-TTTT-ATTAAAA---AA---TTGAAACATT-TGTC--TGAG----TTTCTC-CCCAACATCTTACACT---CA--T---TAAATA---AT--CTAATCTT-CCTTCAAAT----TT---CC-CTTTTCATCT-------AT--AAG--------AACACAT-C--AAAACTTTCTCA----------------A--TT-A-TTTGTTTT-ACATG-AA-TA-GAGAA---TTAG-T-TCCGT-G-C--ATAT--T
gi|4 : AGATAGAAAACTGGTTAAAATCTAT------ATT-GATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTG-A-AAACTGC-AA-T-AC-AAAGA------------GTTTGACAAATGTTTT-A-CAAAA---AA---TTG-AACATT-CA-CA-TGAG----TTTCTC-CC
gi|5 : -AAAT-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTTAA-CAAAA---TA---TTG-AACATT-CATCATTAAG----TTTCTCGTCTAACA--TTACA-C---CTCAT---TA---AAACAT--CTAATCTT-TCTT-AAATCTC-TC---TC-CTTTTCTTC--------ATAAAAA--------AACAAAA-CAAAAAACTTTCACATACATATTCA-TGTATACGTC-ATTTTG-TAT-ACATGTAA-TCGGAGAA---TAAGAT-TTTGT-G-CATATAT--CTAT-----G------T----TTTTCTG--------TTTG-TCGTAAGAATGATAT-TGAT------CAAG-AATGAGA--C-----TTGTGGAAAA----CAAAAAAAAA
gi|6 : T-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTT-A-CAAAA---TA---TTG-AACATT-CATCA-TAAG----TTTCTC-TCTAACATTTTACA-C---CTCAT---TA---AAC-AT--CT-ATCTT-TCTTCAAATCTC-TC---C---TTTTCTTCT-------ATAAAAA--------AAAACAA-C--AAAACTTTCACATACATATTCATTGTATA--TC-A-TTTG-TAT-ACATGTAA-TC-GAGAA---TAAG-T-TTTGT-G-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTG---------GTAAGAATGATAT-TGATGTGTG-TGAA------------------------AA----CAAAAAAAAAa
gi|7 : aATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAAT-CT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGC-AAGT-AC-AAAGa
gi|8 : gaACCCTTTCCA-AGAAGTTAAGTTTTGAAAACCTAAAACAGA--ACAGTCGATTTTAAG--TAAAAAAAAAAAAATTTTTTTTTTATTGAA-AA-TTGTTAAGT-AC-AACGAAT-TTAACAAATGTTTGAAAATTGTCTA-ACCAAAATAGAA---TTG-AACATT-CATCA---A------------------ATCTTGCG-T---C---TCTCTA---A---ATAACT-GTCTT-CCTT------TC-AC---C------TCTTCT-------AT-AAAA--------GACATAA-C--A----TTTTGAATGCATG-----TGTG-A--TC-G-TTT
gi|9 : ---AT--CT-GTCTTCTTTTCAAATCTT-CCTTTCC-TTTTTTTTTTTTTCTTCAT-AAAATTTTTTTTAACACATTC--AAAACTT-CACA---ATATTT--CGTATA--TC-AATTTG-GAT-G-----AA-TT-GAGAA---TAAG-TCTTTGT-GTC--ATAT--TTATTGGGGG-----TT----TTTTTCGGATTT----TTG-T-GTAAGAATGCTAT-AGATGTATGTTGGA-AATCA-A-----------------------AAAAAAAAAtg
Alignments
lowQualScore : 111 111 222222 11 3333 222222 11 1111 111 1111 555555555555555555555 1 11111111 11111111 11 11111111111 1111 111 666666666666666666666666
lowQualScore : 7 444 000 2 888888 0 0 0 8 3 11 4444 333333 11 1 1 6 6 7 4444 666 6 5 4 5 5 5 3 5 5 5 9999 888 5 5 5 0000 5 0 999999999999999999999 0 5 22 7777 555 66666666 88 44444444 55 55 888 99 55 4 888 4 888 3 4 4 777 4 4 8 66 22 77777777777 0000 7 555 4 4 1 77 88 5 33 888888888888888888888888
lowQualScore : . ... ... . ...... . . . . . .. .... ...... .. . . . . . .... ... . . . . . . . . . . .... ... . . . .... . . ..................... . . .. .... ... ........ .. ........ .. .. ... .. .. . ... . ... . . . ... . . . .. .. ........... .... . ... . . . .. .. . .. ........................
lowQualScore : 3 777 777 5 888888 8 8 8 0 8 00 4444 000000 00 4 0 7 7 8 2222 777 7 7 0 0 0 7 0 0 0 0 5555 888 0 0 0 6666 0 1 555555555555555555555 0 0 99 9999 444 11111111 88 55555555 00 55 666 55 55 0 555 4 222 4 4 4 888 4 4 9 11 22 00000000000 6666 4 777 4 4 1 00 77 7 33 666666666666666666666666
consensus : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACA-T---CTCAT---TAA--AT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
Reference ( family-3861 ) : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACA-T---C---T---TAA--A--ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
gi|1 : GACAATAGATCATTTATTTTCAGAATGTC-TTTTAATC-AAAGAGTTTTGGATCGAGATAGAAAG-TGGTTAAAATCTACCTGTACATTAAATATTGACATAAACTTAAACAGGAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATGAAATCGTCTAGAAAAATCTCATAATTCT--AACAATTTTAAAAATACATGTACTATATTTAAATACAAACAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAAAGAATGTAATCAAT----AGACTATATATTGAAAA--ATTTATTTTGCTGAA-AAACTGT-AAAT-AC-AAGGAAT-TTAACAACTGTTTGAAAAATGTTCT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----CTTCTC-TCTAACATCTT---------------------A--ACCT-ATCTT-TCGTCAAATCT--C-TCCCATTTTTCTTCT--------AT-AAAA--------AACCCAA-C--AAAACTTTCACATATATATTC--TGTATA--T-C-A-TTTG-TGT-ACATATAA-TT-GAGAATA---AG-T-TTTGTG-C--ATATAATTAT-----GGGGTTTT----TTTTCTGTTTTTGG-TTTG-T-GTAAGAATGATAT-TGATGTATA-TGAA-AATCA-ATTT-----T-------AAC---CAAAAAAAAAT
gi|10 : taTTCAAAGAT--A-TCCT-CTTTTCTTCT--------AT-AAAA--------TACACAT-C--CAAACTTTCAC--AGATATTC--TGTATA--T-CAA-TTTG-TAT-G-----AA-TT-GAGAACA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TTTGGGTTTTTTAATTTTGA-CTTG-T-GTAAGAATGCTAT-AGATATATG-TGAA-AACGA-A--T--------------------AAAAAAAAATcatagtaaa
gi|11 : tctGTTTT-A-T-AAAA---AAAAAT---AACATTGCATCA-TGAGAGAGTTTCTC-CCTAACATCTTACA-T---CTCAT---TAG--AT-ATTT-ATCTT-TCTTCAAATCG--CATC-----TTTCTTCT--------CT-AAAA--------AACACAT-C--AAAA---TCA-ATAAATATatt
gi|12 : attactgattatg-AAAA--------AACACAT-C--AAAACTTTC-CATA--TATTC--TGTATA--TTC-A-ATTG-TAC--CATGTAA-TT-GAAGATATTAAG-T-TTTATGGC--ATAA----AT-----A-----TT----TTTT-TATTATTGAATTTG-T-GTAAGAATGCTATCAGATGTAT--TGAATAAAAA-A--TA----T-------AA----atca
gi|13 : TATTC--TGTGCA--T-C-A-TTTG-TATAGCATGTGATTT-GAGAAAG---AC-T-TTTGTC-T--AGATGGTCA------G-----TT----TTTTCTGTTTTTG---TTGTT-GTGATAATGCT-----ATGTATG-TGAA-AATCA-A--TAGAACT-------AATCCCCAAAAAA
gi|14 : tGACAATAGATCATTTGTTTTCAGAATGTTGTTTTAATTTAAAGAGCTTTGGATT
gi|15 : GACAATAGATCATT-GTTTTCAGAATGTTG-TTTAA-TTAAAGAGCTTTGGATTG
gi|16 : TTCTGTTTTTGG-TTTG-T-GTAAGAATGATAT-TGATGTAT
gi|2 : TGAGATAGAAAACTGGTTAAAATCTAC------ATCAGATATTGATATAAACTTAAGCAGAAAATCAATTTTGTTTGGTAAAATAAATAATTTTAGATCAAATCGTCTAGAAAA-TCTTCTAATCCT--AATAATTT-AAAAATAC------TATATTCA--TACAAACAAGTTCACCACTTCAA-AATAGCTAAATTTTGAGAATCTAAAAACTATTGTAGTCTAT----AGACTATACATTGAAAA---TTTATTTTGCCGAA-AAACTGG-AAAT-AC-AAGGAAT-GTAATAAATGTTTGAAAAATGTTTT-A-C-TAAA---AA---TTG-AACATT-CGTCA-TGAG----TTTCTC-CCCAACATCTTACA-TTTCT---T---TAA--AT-ATCT-GTCTT-CTTTCAAA--T--C-TCCT-CGTTTCCTCT--------AT--AAA--------AACACAC-C--AAAACTTTCACATGCATATTC--TGTATA--T-CAA-TTTG-TAT-GCATGCAA-TT-TAGAATA---AG-T-TTTGTG-C--ACAT--TTAT-----G-----TT----TTTGCTG-TTTTGA-TTTG-T-GTAAGAATGCTAT-AGATa
gi|3 : TAAATAT-GATATAAACTTAAGCATGAATTCAATTTTGTTTGGTAAAG--AATAACTTTCGATCAAATCATCTA-AAGA-TCTTATAATTCTTGAATAATT---AAAATAC------TACATTTA--AAACAGCGAGTTCACCACTTCCACAGAAGCTAAGTTT-GAGAACCTAAAAA-GAATGTAATTAAT----AGACTATACATTCAA------TTATTTTGCTGAAGAAACT-T-AAGTTACCAAGGAATATTAACAAGTGTTTGAAAAAT-TTTT-ATT-AAAA---AA---TTGAAACATT-TGTC--TGAG----TTTCTC-CCCAACATCTTACACT---CA--T---TAAATA--ATCTAATCTT-CCTTCAAAT------TTCC-CTTTTCATCT--------AT--AAG--------AACACAT-C--AAAACTTTCTCA----------------A--T-T-A-TTTGTTTT-ACATG-AA-TA-GAGAATT---AG-T-TCCGTG-C--ATAT--T
gi|4 : AGATAGAAAACTGGTTAAAATCTAT------ATT-GATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTG-A-AAACTGC-AA-T-AC-AAAGA------------GTTTGACAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CA-CA-TGAG----TTTCTC-CC
gi|5 : -AAAT-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTTAA-C-AAAA---TA---TTG-AACATT-CATCATTAAG----TTTCTCGTCTAACA--TTACA-C---CTCAT---TAA--AACATCTAATCTT-TCTT-AAATCT--C-TCTC-CTTTTCTTC---------ATAAAAA--------AACAAAA-CAAAAAACTTTCACATACATATTCA-TGTATACGT-C-ATTTTG-TAT-ACATGTAA-TCGGAGAATA---AGAT-TTTGTG-CATATAT--CTAT-----G------T----TTTTCTG--------TTTG-TCGTAAGAATGATAT-TGAT------CAAG-AATGAGA--C-----TTGTGGAAAA----CAAAAAAAAA
gi|6 : T-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----TTTCTC-TCTAACATTTTACA-C---CTCAT---TAA--AC-ATCT-ATCTT-TCTTCAAATCT--C-T--C-CTTTTCTTCT--------ATAAAAA--------AAAACAA-C--AAAACTTTCACATACATATTCATTGTATA--T-C-A-TTTG-TAT-ACATGTAA-TC-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTG---------GTAAGAATGATAT-TGATGTGTG-TGAA------------------------AA----CAAAAAAAAAa
gi|7 : aATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAAT-CT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGC-AAGT-AC-AAAGa
gi|8 : gaACCCTTTCCA-AGAAGTTAAGTTTTGAAAACCTAAAACAGA--ACAGTCGATTTTAAG--TAAAAAAAAAAAAATTTTTTTTTTATTGAA-AA-TTGTTAAGT-AC-AACGAAT-TTAACAAATGTTTGAAAATTGTCTA-A-CCAAAATAGAA---TTG-AACATT-CATCA--------------------A-ATCTTGCG-T---C---TCTCTAA--A-----T-AACTG-TCTTC----CT--T-TCAC-CT---CTTCT--------AT-AAAA--------GACATAA-C--A----TTTTGAATGCATG-----TGTG-A--T-C-G-TTT
gi|9 : AA--AT-ATCT-GTCTTCTTTTCAAATCTTCC-TTTC-CTTTTTTTTTTTTTCTTCAT-AAAATTTTTTTTAACACATTC--AAAACTT-CACA---ATATTT--CGTATA--T-C-AATTTG-GAT-G-----AA-TT-GAGAATA---AG-TCTTTGTGTC--ATAT--TTATTGGGGG-----TT----TTTTTCGGATTT----TTG-T-GTAAGAATGCTAT-AGATGTATGTTGGA-AATCA-A-----------------------AAAAAAAAAtg
Alignments
lowQualScore : 111 111 222222 11 3333 222222 11 1111 111 1111 1 1111111 11111111 11111111 11 11111111111 1111 111 666666666666666666666666
lowQualScore : 7 444 000 2 888888 0 0 0 8 3 11 4444 333333 11 1 1 6 6 7 4444 666 6 5 4 5 5 5 3 5 5 5 9999 888 5 5 5 0000 5 5 1 5 5 0 5 1 3333333 555 66666666 88 44444444 55 55 888 99 55 4 888 4 888 3 4 4 777 4 4 8 66 22 77777777777 0000 7 555 4 4 1 77 88 5 33 888888888888888888888888
lowQualScore : . ... ... . ...... . . . . . .. .... ...... .. . . . . . .... ... . . . . . . . . . . .... ... . . . .... . . . . . . . . ....... ... ........ .. ........ .. .. ... .. .. . ... . ... . . . ... . . . .. .. ........... .... . ... . . . .. .. . .. ........................
lowQualScore : 3 777 777 5 888888 8 8 8 0 8 00 4444 000000 00 4 0 7 7 8 2222 777 7 7 0 0 0 7 0 0 0 0 5555 888 0 0 0 6666 0 7 9 0 0 0 0 1 6666666 444 11111111 88 55555555 00 55 666 55 55 0 555 4 222 4 4 4 888 4 4 9 11 22 00000000000 6666 4 777 4 4 1 00 77 7 33 666666666666666666666666
consensus : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
Reference ( family-3861 ) : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
gi|1 : GACAATAGATCATTTATTTTCAGAATGTC-TTTTAATC-AAAGAGTTTTGGATCGAGATAGAAAG-TGGTTAAAATCTACCTGTACATTAAATATTGACATAAACTTAAACAGGAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATGAAATCGTCTAGAAAAATCTCATAATTCT--AACAATTTTAAAAATACATGTACTATATTTAAATACAAACAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAAAGAATGTAATCAAT----AGACTATATATTGAAAA--ATTTATTTTGCTGAA-AAACTGT-AAAT-AC-AAGGAAT-TTAACAACTGTTTGAAAAATGTTCT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----CTTCTC-TCTAACATCTTA---------------ACCT-ATCTT-TCGTCAAATCT--C-TCCCATTTTTCTTCT--------AT-AAAA--------AACCCAA-C--AAAACTTTCACATATATATTC--TGTATA--T-C-A-TTTG-TGT-ACATATAA-TT-GAGAATA---AG-T-TTTGTG-C--ATATAATTAT-----GGGGTTTT----TTTTCTGTTTTTGG-TTTG-T-GTAAGAATGATAT-TGATGTATA-TGAA-AATCA-ATTT-----T-------AAC---CAAAAAAAAAT
gi|10 : taTTCAAAGAT--A-TCCT-CTTTTCTTCT--------AT-AAAA--------TACACAT-C--CAAACTTTCAC--AGATATTC--TGTATA--T-CAA-TTTG-TAT-G-----AA-TT-GAGAACA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TTTGGGTTTTTTAATTTTGA-CTTG-T-GTAAGAATGCTAT-AGATATATG-TGAA-AACGA-A--T--------------------AAAAAAAAATcatagtaaa
gi|11 : tctGTTTT-A-T-AAAA---AAAAAT---AACATTGCATCA-TGAGAGAGTTTCTC-CCTAACATCTTACATCTCATT-AGAT-ATTT-ATCTT-TCTTCAAATCG--CATC-----TTTCTTCT--------CT-AAAA--------AACACAT-C--AAAA---TCA-ATAAATATatt
gi|12 : attactgattatg-AAAA--------AACACAT-C--AAAACTTTC-CATA--TATTC--TGTATA--TTC-A-ATTG-TAC--CATGTAA-TT-GAAGATATTAAG-T-TTTATGGC--ATAA----AT-----A-----TT----TTTT-TATTATTGAATTTG-T-GTAAGAATGCTATCAGATGTAT--TGAATAAAAA-A--TA----T-------AA----atca
gi|13 : TATTC--TGTGCA--T-C-A-TTTG-TATAGCATGTGATTT-GAGAAAG---AC-T-TTTGTC-T--AGATGGTCA------G-----TT----TTTTCTGTTTTTG---TTGTT-GTGATAATGCT-----ATGTATG-TGAA-AATCA-A--TAGAACT-------AATCCCCAAAAAA
gi|14 : tGACAATAGATCATTTGTTTTCAGAATGTTGTTTTAATTTAAAGAGCTTTGGATT
gi|15 : GACAATAGATCATT-GTTTTCAGAATGTTG-TTTAA-TTAAAGAGCTTTGGATTG
gi|16 : TTCTGTTTTTGG-TTTG-T-GTAAGAATGATAT-TGATGTAT
gi|2 : TGAGATAGAAAACTGGTTAAAATCTAC------ATCAGATATTGATATAAACTTAAGCAGAAAATCAATTTTGTTTGGTAAAATAAATAATTTTAGATCAAATCGTCTAGAAAA-TCTTCTAATCCT--AATAATTT-AAAAATAC------TATATTCA--TACAAACAAGTTCACCACTTCAA-AATAGCTAAATTTTGAGAATCTAAAAACTATTGTAGTCTAT----AGACTATACATTGAAAA---TTTATTTTGCCGAA-AAACTGG-AAAT-AC-AAGGAAT-GTAATAAATGTTTGAAAAATGTTTT-A-C-TAAA---AA---TTG-AACATT-CGTCA-TGAG----TTTCTC-CCCAACATCTTACATTTCTTT-AAAT-ATCT-GTCTT-CTTTCAAA--T--C-TCCT-CGTTTCCTCT--------AT--AAA--------AACACAC-C--AAAACTTTCACATGCATATTC--TGTATA--T-CAA-TTTG-TAT-GCATGCAA-TT-TAGAATA---AG-T-TTTGTG-C--ACAT--TTAT-----G-----TT----TTTGCTG-TTTTGA-TTTG-T-GTAAGAATGCTAT-AGATa
gi|3 : TAAATAT-GATATAAACTTAAGCATGAATTCAATTTTGTTTGGTAAAG--AATAACTTTCGATCAAATCATCTA-AAGA-TCTTATAATTCTTGAATAATT---AAAATAC------TACATTTA--AAACAGCGAGTTCACCACTTCCACAGAAGCTAAGTTT-GAGAACCTAAAAA-GAATGTAATTAAT----AGACTATACATTCAA------TTATTTTGCTGAAGAAACT-T-AAGTTACCAAGGAATATTAACAAGTGTTTGAAAAAT-TTTT-ATT-AAAA---AA---TTGAAACATT-TGTC--TGAG----TTTCTC-CCCAACATCTTACA-CTCATT-AAATAATCTAATCTT-CCTTCAAAT------TTCC-CTTTTCATCT--------AT--AAG--------AACACAT-C--AAAACTTTCTCA----------------A--T-T-A-TTTGTTTT-ACATG-AA-TA-GAGAATT---AG-T-TCCGTG-C--ATAT--T
gi|4 : AGATAGAAAACTGGTTAAAATCTAT------ATT-GATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTG-A-AAACTGC-AA-T-AC-AAAGA------------GTTTGACAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CA-CA-TGAG----TTTCTC-CC
gi|5 : -AAAT-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTTAA-C-AAAA---TA---TTG-AACATT-CATCATTAAG----TTTCTCGTCTAACA--TTACACCTCATTAAAAC-ATCTAATCTT-TCTT-AAATCT--C-TCTC-CTTTTCTTC---------ATAAAAA--------AACAAAA-CAAAAAACTTTCACATACATATTCA-TGTATACGT-C-ATTTTG-TAT-ACATGTAA-TCGGAGAATA---AGAT-TTTGTG-CATATAT--CTAT-----G------T----TTTTCTG--------TTTG-TCGTAAGAATGATAT-TGAT------CAAG-AATGAGA--C-----TTGTGGAAAA----CAAAAAAAAA
gi|6 : T-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----TTTCTC-TCTAACATTTTACACCTCATT-AAAC-ATCT-ATCTT-TCTTCAAATCT--C-T--C-CTTTTCTTCT--------ATAAAAA--------AAAACAA-C--AAAACTTTCACATACATATTCATTGTATA--T-C-A-TTTG-TAT-ACATGTAA-TC-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTG---------GTAAGAATGATAT-TGATGTGTG-TGAA------------------------AA----CAAAAAAAAAa
gi|7 : aATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAAT-CT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGC-AAGT-AC-AAAGa
gi|8 : gaACCCTTTCCA-AGAAGTTAAGTTTTGAAAACCTAAAACAGA--ACAGTCGATTTTAAG--TAAAAAAAAAAAAATTTTTTTTTTATTGAA-AA-TTGTTAAGT-AC-AACGAAT-TTAACAAATGTTTGAAAATTGTCTA-A-CCAAAATAGAA---TTG-AACATT-CATCA--------------------A-ATCTTGCGTCTCTCT-AAAT-AACT-GTCTT-CCTT-----------TCAC-CT---CTTCT--------AT-AAAA--------GACATAA-C--A----TTTTGAATGCATG-----TGTG-A--T-C-G-TTT
gi|9 : -AAAT-ATCT-GTCTTCTTTTCAAATCTTCC-TTTC-CTTTTTTTTTTTTTCTTCAT-AAAATTTTTTTTAACACATTC--AAAACTT-CACA---ATATTT--CGTATA--T-C-AATTTG-GAT-G-----AA-TT-GAGAATA---AG-TCTTTGTGTC--ATAT--TTATTGGGGG-----TT----TTTTTCGGATTT----TTG-T-GTAAGAATGCTAT-AGATGTATGTTGGA-AATCA-A-----------------------AAAAAAAAAtg
Alignments
lowQualScore : 111 111 222222 11 3333 222222 11 1111 111 1111 1 1111111 11111111 11111111 11 11111111111 1111 111 666666666666666666666666
lowQualScore : 7 444 000 2 888888 0 0 0 8 3 11 4444 333333 11 1 1 6 6 7 4444 666 6 5 4 5 5 5 3 5 5 5 9999 888 5 5 5 0000 5 5 1 5 5 0 5 1 3333333 555 66666666 88 44444444 55 55 888 99 55 4 888 4 888 3 4 4 777 4 4 8 66 22 77777777777 0000 7 555 4 4 1 77 88 5 33 888888888888888888888888
lowQualScore : . ... ... . ...... . . . . . .. .... ...... .. . . . . . .... ... . . . . . . . . . . .... ... . . . .... . . . . . . . . ....... ... ........ .. ........ .. .. ... .. .. . ... . ... . . . ... . . . .. .. ........... .... . ... . . . .. .. . .. ........................
lowQualScore : 3 777 777 5 888888 8 8 8 0 8 00 4444 000000 00 4 0 7 7 8 2222 777 7 7 0 0 0 7 0 0 0 0 5555 888 0 0 0 6666 0 7 9 0 0 0 0 1 6666666 444 11111111 88 55555555 00 55 666 55 55 0 555 4 222 4 4 4 888 4 4 9 11 22 00000000000 6666 4 777 4 4 1 00 77 7 33 666666666666666666666666
consensus : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
Reference ( family-3861 ) : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
gi|1 : GACAATAGATCATTTATTTTCAGAATGTC-TTTTAATC-AAAGAGTTTTGGATCGAGATAGAAAG-TGGTTAAAATCTACCTGTACATTAAATATTGACATAAACTTAAACAGGAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATGAAATCGTCTAGAAAAATCTCATAATTCT--AACAATTTTAAAAATACATGTACTATATTTAAATACAAACAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAAAGAATGTAATCAAT----AGACTATATATTGAAAA--ATTTATTTTGCTGAA-AAACTGT-AAAT-AC-AAGGAAT-TTAACAACTGTTTGAAAAATGTTCT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----CTTCTC-TCTAACATCTTA---------------ACCT-ATCTT-TCGTCAAATCT--C-TCCCATTTTTCTTCT--------AT-AAAA--------AACCCAA-C--AAAACTTTCACATATATATTC--TGTATA--T-C-A-TTTG-TGT-ACATATAA-TT-GAGAATA---AG-T-TTTGTG-C--ATATAATTAT-----GGGGTTTT----TTTTCTGTTTTTGG-TTTG-T-GTAAGAATGATAT-TGATGTATA-TGAA-AATCA-ATTT-----T-------AAC---CAAAAAAAAAT
gi|10 : taTTCAAAGAT--A-TCCT-CTTTTCTTCT--------AT-AAAA--------TACACAT-C--CAAACTTTCAC--AGATATTC--TGTATA--T-CAA-TTTG-TAT-G-----AA-TT-GAGAACA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TTTGGGTTTTTTAATTTTGA-CTTG-T-GTAAGAATGCTAT-AGATATATG-TGAA-AACGA-A--T--------------------AAAAAAAAATcatagtaaa
gi|11 : tctGTTTT-A-T-AAAA---AAAAAT---AACATTGCATCA-TGAGAGAGTTTCTC-CCTAACATCTTACATCTCATT-AGAT-ATTT-ATCTT-TCTTCAAATCG--CATC-----TTTCTTCT--------CT-AAAA--------AACACAT-C--AAAA---TCA-ATAAATATatt
gi|12 : attactgattatg-AAAA--------AACACAT-C--AAAACTTTC-CATA--TATTC--TGTATA--TTC-A-ATTG-TAC--CATGTAA-TT-GAAGATATTAAG-T-TTTATGGC--ATAA----AT-----A-----TT----TTTT-TATTATTGAATTTG-T-GTAAGAATGCTATCAGATGTAT--TGAATAAAAA-A--TA----T-------AA----atca
gi|13 : TATTC--TGTGCA--T-C-A-TTTG-TATAGCATGTGATTT-GAGAAAG---AC-T-TTTGTC-T--AGATGGTCA------G-----TT----TTTTCTGTTTTTG---TTGTT-GTGATAATGCT-----ATGTATG-TGAA-AATCA-A--TAGAACT-------AATCCCCAAAAAA
gi|14 : tGACAATAGATCATTTGTTTTCAGAATGTTGTTTTAATTTAAAGAGCTTTGGATT
gi|15 : GACAATAGATCATT-GTTTTCAGAATGTTG-TTTAA-TTAAAGAGCTTTGGATTG
gi|16 : TTCTGTTTTTGG-TTTG-T-GTAAGAATGATAT-TGATGTAT
gi|2 : TGAGATAGAAAACTGGTTAAAATCTAC------ATCAGATATTGATATAAACTTAAGCAGAAAATCAATTTTGTTTGGTAAAATAAATAATTTTAGATCAAATCGTCTAGAAAA-TCTTCTAATCCT--AATAATTT-AAAAATAC------TATATTCA--TACAAACAAGTTCACCACTTCAA-AATAGCTAAATTTTGAGAATCTAAAAACTATTGTAGTCTAT----AGACTATACATTGAAAA---TTTATTTTGCCGAA-AAACTGG-AAAT-AC-AAGGAAT-GTAATAAATGTTTGAAAAATGTTTT-A-C-TAAA---AA---TTG-AACATT-CGTCA-TGAG----TTTCTC-CCCAACATCTTACATTTCTTT-AAAT-ATCT-GTCTT-CTTTCAAA--T--C-TCCT-CGTTTCCTCT--------AT--AAA--------AACACAC-C--AAAACTTTCACATGCATATTC--TGTATA--T-CAA-TTTG-TAT-GCATGCAA-TT-TAGAATA---AG-T-TTTGTG-C--ACAT--TTAT-----G-----TT----TTTGCTG-TTTTGA-TTTG-T-GTAAGAATGCTAT-AGATa
gi|3 : TAAATAT-GATATAAACTTAAGCATGAATTCAATTTTGTTTGGTAAAG--AATAACTTTCGATCAAATCATCTA-AAGA-TCTTATAATTCTTGAATAATT---AAAATAC------TACATTTA--AAACAGCGAGTTCACCACTTCCACAGAAGCTAAGTTT-GAGAACCTAAAAA-GAATGTAATTAAT----AGACTATACATTCAA------TTATTTTGCTGAAGAAACT-T-AAGTTACCAAGGAATATTAACAAGTGTTTGAAAAAT-TTTT-ATT-AAAA---AA---TTGAAACATT-TGTC--TGAG----TTTCTC-CCCAACATCTTACA-CTCATT-AAATAATCTAATCTT-CCTTCAAAT------TTCC-CTTTTCATCT--------AT--AAG--------AACACAT-C--AAAACTTTCTCA----------------A--T-T-A-TTTGTTTT-ACATG-AA-TA-GAGAATT---AG-T-TCCGTG-C--ATAT--T
gi|4 : AGATAGAAAACTGGTTAAAATCTAT------ATT-GATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTG-A-AAACTGC-AA-T-AC-AAAGA------------GTTTGACAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CA-CA-TGAG----TTTCTC-CC
gi|5 : -AAAT-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTTAA-C-AAAA---TA---TTG-AACATT-CATCATTAAG----TTTCTCGTCTAACA--TTACACCTCATTAAAAC-ATCTAATCTT-TCTT-AAATCT--C-TCTC-CTTTTCTTC---------ATAAAAA--------AACAAAA-CAAAAAACTTTCACATACATATTCA-TGTATACGT-C-ATTTTG-TAT-ACATGTAA-TCGGAGAATA---AGAT-TTTGTG-CATATAT--CTAT-----G------T----TTTTCTG--------TTTG-TCGTAAGAATGATAT-TGAT------CAAG-AATGAGA--C-----TTGTGGAAAA----CAAAAAAAAA
gi|6 : T-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----TTTCTC-TCTAACATTTTACACCTCATT-AAAC-ATCT-ATCTT-TCTTCAAATCT--C-T--C-CTTTTCTTCT--------ATAAAAA--------AAAACAA-C--AAAACTTTCACATACATATTCATTGTATA--T-C-A-TTTG-TAT-ACATGTAA-TC-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTG---------GTAAGAATGATAT-TGATGTGTG-TGAA------------------------AA----CAAAAAAAAAa
gi|7 : aATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAAT-CT--AATAATC----AAATGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGC-AAGT-AC-AAAGa
gi|8 : gaACCCTTTCCA-AGAAGTTAAGTTTTGAAAACCTAAAACAGA--ACAGTCGATTTTAAG--TAAAAAAAAAAAAATTTTTTTTTTATTGAA-AA-TTGTTAAGT-AC-AACGAAT-TTAACAAATGTTTGAAAATTGTCTA-A-CCAAAATAGAA---TTG-AACATT-CATCA--------------------A-ATCTTGCGTCTCTCT-AAAT-AACT-GTCTT-CCTT-----------TCAC-CT---CTTCT--------AT-AAAA--------GACATAA-C--A----TTTTGAATGCATG-----TGTG-A--T-C-G-TTT
gi|9 : -AAAT-ATCT-GTCTTCTTTTCAAATCTTCC-TTTC-CTTTTTTTTTTTTTCTTCAT-AAAATTTTTTTTAACACATTC--AAAACTT-CACA---ATATTT--CGTATA--T-C-AATTTG-GAT-G-----AA-TT-GAGAATA---AG-TCTTTGTGTC--ATAT--TTATTGGGGG-----TT----TTTTTCGGATTT----TTG-T-GTAAGAATGCTAT-AGATGTATGTTGGA-AATCA-A-----------------------AAAAAAAAAtg
blockSeqs : T TGT TTT C . . C TG TAA . . C A C C T TTTA ATT G T A T C A A A T C TAGA AAA A G T AGAG G T A A A A C C TCTTCC CT TTTTCTTC AA TTTTTTTT TT AA TAA AT CG T AA T AGC T T G TTA A C G AT GG TGGGGG TGGG A AAT T C C CA GT T CG ATAGAACTAATCCC
blockSeqs : . TG TT C . . T . A . . A G . C A . T . . G . . . G . . . A . . . . . . T T . . A . C TCGCA CT . AA . T . TGC A . . AA . GC T . . . . . T . . G . T AC . . C A G . AA GACTTGTGGAAAA
blockSeqs : C . . T . . . . T C . C T . T . . A . . . T . . . A . . . . . . C A . . . . C GATA CC . A . T . TAC . . . AT . AC C . . . . . . . . A . T GT . . C T G . TC ATATAA
blockSeqs : . . . . . . T C . A T . . . . G . . . T . . . A . . . . . . C A . . . . C TCTC TC . A . T . TAC . . . AA . AC T . . . . . . . . G . T AT . . A A G . TG AT
blockSeqs : . . . . . . . G . . . A . . . A . . . . . . T A . . . . C TCTC AC . A . C . TGC . . . A . AC T . . . . . . . . G . T T . . C T . . TC AA
blockSeqs : . . . . . . . . . T . . . . . . . T . . . . C TC TC . A . T . AG . . . A . G . . . . . . . . . G . G . . . A T . . . A
blockSeqs : . . . . . T . . . . . . . . . . . T C . A . A . TA . . . A . C . . . . . . . . . G . . . . . A A
blockSeqs : . . . . . . A . . . . . A . G . . . . . . . . . . . . . C .
blockSeqs : . . A . . . . . G
blockSeqCons : **** ****** ** CC* ** G********** T** ATTAA*******************
originalCons : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-AAAAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTTGA-TTTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
finalCons : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATT----AAATAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAA-TT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTATG----------TT----TTTTCTGTTTTTGT--TTG-T-GTAAGAATGCTAT-NGATGTATG-TGAA-AATNAATTAA-------------------CAAAAAAAAAT
Alignments
lowQualScore : 111 111 222222 11 3333 222222 11 1111 111 1111 1 1111111 11111111 11111111 11 11111111111 1111 11111 666666666666666666666666
lowQualScore : 7 444 000 2 888888 0 0 0 8 3 11 1111 8 333333 11 1 1 6 6 7 4444 666 6 5 4 5 5 5 3 5 5 5 9999 888 5 5 5 0000 5 5 1 5 5 0 5 1 3333333 555 66666666 88 44444444 55 55 888 99 55 4 888 4 888 3 8 777 4 4 8 66 22 77777777777 0000 2 77777 1 77 88 5 33 888888888888888888888888
lowQualScore : . ... ... . ...... . . . . . .. .... . ...... .. . . . . . .... ... . . . . . . . . . . .... ... . . . .... . . . . . . . . ....... ... ........ .. ........ .. .. ... .. .. . ... . ... . . ... . . . .. .. ........... .... . ..... . .. .. . .. ........................
lowQualScore : 3 777 777 5 888888 8 8 8 0 8 00 0000 0 000000 00 4 0 7 7 8 2222 777 7 7 0 0 0 7 0 0 0 0 5555 888 0 0 0 6666 0 7 9 0 0 0 0 1 6666666 444 11111111 88 55555555 00 55 666 55 55 0 555 4 222 4 9 888 4 4 9 11 22 00000000000 6666 0 66666 1 00 77 7 33 666666666666666666666666
consensus : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATTT-A-AAA-TAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAATT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTT-G--TTTGTGTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
Reference ( family-3861 ) : NNGACAATAGATCATTTGTTTTCAGAATGTCGTTTTAATTTAAAGAGCTTTGGATTGAGATAGAAAACTGGTTAAAATCTAC------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATT----AAA-TAC------TATATTTA--TACAANCAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAACGATTGTAGTCAAT----AGACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGT-AAGT-AC-AAGGAAT-TTAACAANTGTTTGAAAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CATCA-TGAG----TTTCTC-CCTAACATCTTACATCTCATT-AAAT-ATCT-ATCTT-TCTTCAAATCT--C-TCCC-CTTTTCTTCT--------AT-AAAA--------AACACAN-C--AAAACTTTCACATACATATTC--TGTATA--T-C-A-TTTG-TAT-GCATGTAATT-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTT-G--TTTGTGTAAGAATGCTAT-NGATGTATG-TGAA-AATNA-A--T-----T-------AA----CAAAAAAAAAT
gi|1 : GACAATAGATCATTTATTTTCAGAATGTC-TTTTAATC-AAAGAGTTTTGGATCGAGATAGAAAG-TGGTTAAAATCTACCTGTACATTAAATATTGACATAAACTTAAACAGGAATTCAATTTTGTTTGGTAAAATAAATAACTTTAGATGAAATCGTCTAGAAAAATCTCATAATTCT--AACAATTTTAAAAA-TACATGTACTATATTTAAATACAAACAAGTTCACCACTTCAA-AGAAGCTAAGTTTTGAGAACCTAAAAAAGAATGTAATCAAT----AGACTATATATTGAAAA--ATTTATTTTGCTGAA-AAACTGT-AAAT-AC-AAGGAAT-TTAACAACTGTTTGAAAAATGTTCT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----CTTCTC-TCTAACATCTTA---------------ACCT-ATCTT-TCGTCAAATCT--C-TCCCATTTTTCTTCT--------AT-AAAA--------AACCCAA-C--AAAACTTTCACATATATATTC--TGTATA--T-C-A-TTTG-TGT-ACATATAATT-GAGAATA---AG-T-TTTGTG-C--ATATAATTAT-----GGGGTTTT----TTTTCTGTTTTTGG--TTTGTGTAAGAATGATAT-TGATGTATA-TGAA-AATCA-ATTT-----T-------AAC---CAAAAAAAAAT
gi|10 : taTTCAAAGAT--A-TCCT-CTTTTCTTCT--------AT-AAAA--------TACACAT-C--CAAACTTTCAC--AGATATTC--TGTATA--T-CAA-TTTG-TAT-G-----AATT-GAGAACA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TTTGGGTTTTTTAATTTT-GA-CTTGTGTAAGAATGCTAT-AGATATATG-TGAA-AACGA-A--T--------------------AAAAAAAAATcatagtaaa
gi|11 : tctGTTTT-A-T-AAAA---AAAAAT---AACATTGCATCA-TGAGAGAGTTTCTC-CCTAACATCTTACATCTCATT-AGAT-ATTT-ATCTT-TCTTCAAATCG--CATC-----TTTCTTCT--------CT-AAAA--------AACACAT-C--AAAA---TCA-ATAAATATatt
gi|12 : attactgattatg-AAAA--------AACACAT-C--AAAACTTTC-CATA--TATTC--TGTATA--TTC-A-ATTG-TAC--CATGTAATT-GAAGATATTAAG-T-TTTATGGC--ATAA----AT-----A-----TT----TTTT-TATTATT-GAATTTGTGTAAGAATGCTATCAGATGTAT--TGAATAAAAA-A--TA----T-------AA----atca
gi|13 : TATTC--TGTGCA--T-C-A-TTTG-TATAGCATGTGATTTGAGAAAG---AC-T-TTTGTC-T--AGATGGTCA------G-----TT----TTTTCTGTTTTT-G--TTGTTGTGATAATGCT-----ATGTATG-TGAA-AATCA-A--TAGAACT-------AATCCCCAAAAAA
gi|14 : tGACAATAGATCATTTGTTTTCAGAATGTTGTTTTAATTTAAAGAGCTTTGGATT
gi|15 : GACAATAGATCATT-GTTTTCAGAATGTTG-TTTAA-TTAAAGAGCTTTGGATTG
gi|16 : TTCTGTTTTT-GG-TTTGTGTAAGAATGATAT-TGATGTAT
gi|2 : TGAGATAGAAAACTGGTTAAAATCTAC------ATCAGATATTGATATAAACTTAAGCAGAAAATCAATTTTGTTTGGTAAAATAAATAATTTTAGATCAAATCGTCTAGAAAA-TCTTCTAATCCT--AATAATTTAA-AAA-TAC------TATATTCA--TACAAACAAGTTCACCACTTCAA-AATAGCTAAATTTTGAGAATCTAAAAACTATTGTAGTCTAT----AGACTATACATTGAAAA---TTTATTTTGCCGAA-AAACTGG-AAAT-AC-AAGGAAT-GTAATAAATGTTTGAAAAATGTTTT-A-C-TAAA---AA---TTG-AACATT-CGTCA-TGAG----TTTCTC-CCCAACATCTTACATTTCTTT-AAAT-ATCT-GTCTT-CTTTCAAA--T--C-TCCT-CGTTTCCTCT--------AT--AAA--------AACACAC-C--AAAACTTTCACATGCATATTC--TGTATA--T-CAA-TTTG-TAT-GCATGCAATT-TAGAATA---AG-T-TTTGTG-C--ACAT--TTAT-----G-----TT----TTTGCTGTTTTG-A--TTTGTGTAAGAATGCTAT-AGATa
gi|3 : TAAATAT-GATATAAACTTAAGCATGAATTCAATTTTGTTTGGTAAAG--AATAACTTTCGATCAAATCATCTA-AAGA-TCTTATAATTCTTGAATAATT----AAAATAC------TACATTTA--AAACAGCGAGTTCACCACTTCCACAGAAGCTAAGTTT-GAGAACCTAAAAA-GAATGTAATTAAT----AGACTATACATTCAA------TTATTTTGCTGAAGAAACT-T-AAGTTACCAAGGAATATTAACAAGTGTTTGAAAAAT-TTTT-ATT-AAAA---AA---TTGAAACATT-TGTC--TGAG----TTTCTC-CCCAACATCTTACA-CTCATT-AAATAATCTAATCTT-CCTTCAAAT------TTCC-CTTTTCATCT--------AT--AAG--------AACACAT-C--AAAACTTTCTCA----------------A--T-T-A-TTTGTTTT-ACATG-AATA-GAGAATT---AG-T-TCCGTG-C--ATAT--T
gi|4 : AGATAGAAAACTGGTTAAAATCTAT------ATT-GATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAATTCT--AATAATC----AAA-TGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTG-A-AAACTGC-AA-T-AC-AAAGA------------GTTTGACAAATGTTTT-A-C-AAAA---AA---TTG-AACATT-CA-CA-TGAG----TTTCTC-CC
gi|5 : -AAAT-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTTAA-C-AAAA---TA---TTG-AACATT-CATCATTAAG----TTTCTCGTCTAACA--TTACACCTCATTAAAAC-ATCTAATCTT-TCTT-AAATCT--C-TCTC-CTTTTCTTC---------ATAAAAA--------AACAAAA-CAAAAAACTTTCACATACATATTCA-TGTATACGT-C-ATTTTG-TAT-ACATGTAATCGGAGAATA---AGAT-TTTGTG-CATATAT--CTAT-----G------T----TTTTCTG--TTT-G--T---CGTAAGAATGATAT-TGAT------CAAG-AATGAGA--C-----TTGTGGAAAA----CAAAAAAAAA
gi|6 : T-AC-AAGGAAT-TTAACAATTGTTTAAAAAATGTTTT-A-C-AAAA---TA---TTG-AACATT-CATCA-TAAG----TTTCTC-TCTAACATTTTACACCTCATT-AAAC-ATCT-ATCTT-TCTTCAAATCT--C-T--C-CTTTTCTTCT--------ATAAAAA--------AAAACAA-C--AAAACTTTCACATACATATTCATTGTATA--T-C-A-TTTG-TAT-ACATGTAATC-GAGAATA---AG-T-TTTGTG-C--ATAT--TTAT-----G-----TT----TTTTCTGTTTTT-G-------GTAAGAATGATAT-TGATGTGTG-TGAA------------------------AA----CAAAAAAAAAa
gi|7 : aATAGAAAACTGGTTAAAATCTAT------ATTAGATATTGATATAAACTTAAGCAGAAATTCAATTTTGTTTGGTAAAATAAATAACTTTAAATCAAATCGTCTAGAAAA-TCTTATAAT-CT--AATAATC----AAA-TGC------TATATTTA--TATAACCAAGTTCACCACTTCAA-AGAATCTAAATTTTTAGAACCTAAAAACGATTGTAGTCAAT----AAACTATACATTGAAAA--TTTTATTTTGCTGAA-AAACTGC-AAGT-AC-AAAGa
gi|8 : gaACCCTTTCCA-AGAAGTTAAGTTTTGAAAACCTAAAACAGA--ACAGTCGATTTTAAG--TAAAAAAAAAAAAATTTTTTTTTTATTGAA-AA-TTGTTAAGT-AC-AACGAAT-TTAACAAATGTTTGAAAATTGTCTA-A-CCAAAATAGAA---TTG-AACATT-CATCA--------------------A-ATCTTGCGTCTCTCT-AAAT-AACT-GTCTT-CCTT-----------TCAC-CT---CTTCT--------AT-AAAA--------GACATAA-C--A----TTTTGAATGCATG-----TGTG-A--T-C-G-TTT
gi|9 : -AAAT-ATCT-GTCTTCTTTTCAAATCTTCC-TTTC-CTTTTTTTTTTTTTCTTCAT-AAAATTTTTTTTAACACATTC--AAAACTT-CACA---ATATTT--CGTATA--T-C-AATTTG-GAT-G-----AATT-GAGAATA---AG-TCTTTGTGTC--ATAT--TTATTGGGGG-----TT----TTTTTCGGATTT-----TTGTGTAAGAATGCTAT-AGATGTATGTTGGA-AATCA-A-----------------------AAAAAAAAAtg