lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 444444444444444 11111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888 111 555555555555555 111 2222222222222 11111111 11 1111 2222222 11 2222222222 44444444444 333333 111111 11111111 111 1111 7777777777777777777777777777777777777777777 11111 11111 11111 1
lowQualScore : 0 3333333 6666666 666 555 55 7 777 8 4 55 4 55 3 1 666 55 000000000000000 66666666 11111111111111111111111111111111111111111111111111111111111111111111111111111111 4 2 777 55 8 4 4 4 444 4 4 1 000000000000000 4 222 4444444444444 55 3 3 2 99999999 8 44 444 4 4 22 4 4 3 0 6666 777 4 1 777 6666666 1 5 33 2222222222 0 5 66 9 5 66666666666 99 6 5 5 6 88 6 4 999999 4 6 4 777 4 777 222222 99999999 888 9999 333 4444444444444444444444444444444444444444444 22222 555 1 5 1 33333 3 3 22222 3 3 88888 3 3 3 6 8888
lowQualScore : . ....... ....... ... ... .. . ... . . .. . .. . . ... .. ............... ........ ................................................................................ . . ... .. . . . . ... . . . ............... . ... ............. .. . . . ........ . .. ... . . .. . . . . .... ... . . ... ....... . . .. .......... . . .. . . ........... .. . . . . .. . . ...... . . . ... . ... ...... ........ ... .... ... ........................................... ..... ... . . . ..... . . ..... . . ..... . . . . ....
lowQualScore : 8 0000000 9999999 444 000 00 1 777 0 0 55 0 55 4 5 777 55 444444444444444 66666666 00000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 000 55 0 5 0 0 777 4 4 3 111111111111111 0 555 2222222222222 55 3 3 8 88888888 0 88 888 0 0 77 0 0 2 9 1111 111 4 9 999 1111111 8 3 66 4444444444 4 0 99 3 1 99999999999 22 7 1 7 7 11 3 4 111111 4 7 4 888 4 888 888888 88888888 222 8888 333 7777777777777777777777777777777777777777777 55555 999 4 0 1 55555 1 1 88888 3 3 33333 3 3 3 5 5555
consensus : AGGCCAAATAAAA-------AA---A---T---GTGT---G--GTTCCGGTTA--CGC-TCTTATC-A--A-A--AATAGGGT--AG--GTAGGT--AGGNA-------TTTTT--A-----TTTTA------------------T---T----T-----T--TTTTNT--TT-----A--TGG-------------T---------AAT-TCATCAAT---AAA--G-TTGACA-GT-GA--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAA-GTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAA-TC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATC----CT-GACTTTCTGATGTCTG-ACTTGAGGGAAG--CTGGAAACT-G--CAGGCTCTGCATGCATCATGTAATTTGGGGG-A-----TA--CCAGCTAGC--T-GAGAAACAA-TGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAAC---A-GCAACAATG-TCCAANT-A---AT-G---CAA------AACAAAAN-CG----AAAAATTNCGAAAAAAAAAAGAGGTTTAGGG-TC------C------------GGGG-GGG-G---G-GTTAA-TA-----T-TATCTAGGGACGGTCG--C--GT-AACC-GGAAC--C--A-C-A-----C-ATA-TTTTTTT-ATTTGGC----CTTATTA
Reference ( gi|1 ) : AGGCCAAATAAAA-------AA---A---T---GTGT---G--GTTCTGGTTA--TGC-TCTTATC-A--A-A--AATAGGAT--GG--GTAGGT--ACGTA-------TTTTT--A-----TTTTA------------------T---T----T-----T--TTTTAT--TT--------TGG-------------T---------AAT-TCATCAAT---AAA--G-TTGATA-GT-GG--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGTACATGTGTAA-GTCA---TG---T---G-TGA-T--ATACAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAA-TC-TACC-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATC----CTAGACTTTCTGATGTTTA-ACTTGAGGGAAT--CTGAAAACT-G--CAGGCTCTGCATGCATCATGTAAATTAGGGG-A-----TATTCCAGCTAGC--T-GAGAAACAA-TGTGAATTCAAAATGATTTCTT-TAATTAAAA-TAACAATT--A-GCAACAATG-TCCAATT-A---AT-G---CAA------AACAAAAT-TG----AAAAATTCCGAAAAAAAAAAAAGGTTTAAGG-TT------T------------GGGGTGTGTGTGTGTGTTAATTA-----T-TATCTAGGGAAGGTCG--T--GT-AACC-GGAAC--C--A-C-A-----C-ATA-TTTTTTT-ATTAGGC----CTTATTA
gi|4 : AGGCCAAATAAAA-------AAGT-A---T---GCGT---G--GTTCCGGTTACCTGA-CC--ATC-ACTA-GGTAATACTAC--GG--G--GGA--CCCTAAAC----TTCTT--T-----TTTTT------------------T---TGGAAT-----T--TTTCAT--TT--------TTG-------------T---------TTT-GCATTAATTGGACATTG-TTGATA-GT-
gi|3 : aacttttctttatatacataagcaagtcatattgtgcatgtttctgaaaatcatttatggaaatacaatctatgctttgaacaatacgcaagctgagttgctattctaaactcgactttctgatgtctgacttgaaggaagctggaaactgaaggctttgcatgcatcatgtaatttggggaataccagctagctgagaaataatgtgaattcaaaatgattttttataatcaaaataAGGCCAAATAAAA-------AAT--A---T---GTGT---G--GGTCTGGTTA--CGC-TCTTA------A-A--AATTGGAT--AG--GTAGGG--AT----------TTCTT--A-----T---A------------------T---T----T-----T--GGTCAG--AT---------GG-------------T---------GAT-TTATCAAT---AAA--G-TTGACA-AT-GA--TGTA-ATC-TTGTTTTCCAATTTTTCTTTACAT----------GTGCAA-GTCA---TG---TTGTA-TGA-TTCATGCAT-G-TTTCT-AAAA------CTAATTTATG-AA-ATT-GAA-TC-TACT-GCTTT-G-AACAAATATGC-AA-CTGAGT-GCTAT-CCT------TG----TT-GAATTTCTGATGTCTG-AGTAGAGGAAAG--CTAAACACT-G--CAGGCTCTGCATGCACCATGTAAATTGGGGG-A-----T-TTCaacat
gi|6 : AGGCCAAATAAAA-------AA---A---T---ATGTAGCG--GTTC-GGTTA--CGCCTCTTATC-A--A-A--A-TAGGGTAAGG--CTAGGCTAAGGTT-------TTTTTTAA-----TTTTA------------------T---T----TATTTAT--TTTTTT--TT--------TGG-------------TCAAGATCATAATCTCATCAAT---AAA--G-TTGACA-GT-GA--TGCA-A---TTGTTTTCCAA-TTTTC-TTACATACAT----ATGT---A-GTCA---TGT--T---GTTAA-T--ATGCAT-G-TTTATAAAA-------------TACA-AC-A-A-GAA-T--TCCT-GCTTTAG-AGCAAATA---------------CTAT-TCTAAA--ATCCATTCT-GGCTTTCTGA-GTCTAGACTT-AAAGAAG--CTGGAAACT-GTATAGGCTCTGCATGTATTATGTAtttaatcaaaacaacaagcaacgatatccaacggatgcaaaacaaaactgaaaaattctgaaaaaaaaagttttgggtctaggggtattatctatactatagggacagttgggtaaccggaacc
gi|7 : AGGCCAAA-AAAA-------AATACA---T---GTAT---G--TTCCGGGTTA--CGC-TCTTATC-A--A-A--A-TAGGGT--ACATGTAGGT--AGGTA-------GTTTT--A-----TTTTAA-----------------T---T----T-----TCATTTTATGTTT--------TGG-------------T-----------------CAGT---GGT--A-TTGACA--T-GA--TGCT-ATC-TTGTTTTCCAATTTTTCTCGACATAC-T-----TGTGCAA-GCCA---TGTTTT---G-TAATT--ATGCAT-GTTTTCTG-AAT------CTCATTTA---------------C-TACT-GCATT-G-AGCAAATA-G------------------TCTAAA--ATC----ATTGACTTTCTGATGTCT--ACGT-AAAGAAG--CTGAAAACT-G--CAGACTCTG
gi|10 : AGACCAAATTAAA-------AA---A---A---ATGT---G--GTTTCGGTTA--
gi|11 : tgaaaactgcatgcatcatttaatctaggggagaccagctagctggggaaacatgtgaattcaaaattatttcttcaatcacaatgacaacgtaatgatgtccaattaatacacagaatgaaaaattacaaaataaatgttaaagcggaggggggggtattttctagggacggttgggAGGCCAAA-AAAA-------AA---A---T---GTGTT--G--GTTCTGGTTA--CAC-TCTTATCAA--A-A--AATAGGGT--AG--GCGAAT--GTAGA-------ATTTT--A-----TTTTA------------------TATAT----T-----A--TTTTGG--TG--------TGGATGTGAGGATGGTT---------AAT-TCATCAAT---AAT--GATTGACA-GT-TG--TGCA-ATC-TTGTTTCC--ACTTT--CTTACATACATGTGTAT-TATCATGTTA---TATC-T---G-TG--T--ATACAT-G-Taa
gi|17 : tAGGCCAAATAAAAAAATATAAA---A---T---ATGTAA-G--GTTCCGGTTA--a
gi|22 : gtttaagggtccggggggggtaaattagggcataatctagggaaggttgggAGGCCAAGTAAAA-------AA---A---TATAATAT---G--GTTCCGGTTt
gi|2 : aatggtcaagtcGGCCAAATAAAA-------AA---AATAT---GTTT---GCTGTTCCGGTTA--TGC-TCTTATC-A--AGA--AATAGGAT--GG---TAGG-----G-A-------TTTTT--A-----TTTTA------------------T---T----T-----T--TTTTTT--TTTGGTCACATGG-------------T---------AAT-T-ATCAAT---AAA--GCTTGACATGT-GAGTTGTA-GTC-TTGTTTTCCAATTTTTCT---CG---ATGT-CAAGT-CAA-GTT----TG---T---G--GT-T--ATA-ATGG-TTTCTTAAAA------CTCATTTATG-AACATAGCAA-TCTTACTAGCTCT-GAAACAATTATGCAAAGCTGAA--ACTATGTCTAAATCATC----CCAGACTTTCT-ATG-TTG-ACTTG-GACAATAATTGAAAAATGG--TAAGCTCTGCTTGCATCATGCTAATTGGGGGAA-----TA---CAACTA-CAAT-GAGAAACAA-TTTGAATTCAAAAT--TTTC----------AA-TA--AACC--A-GCAGCAATG-TCCAAAT-ATGCAT-GAATCAAATGTCCAACATAATGCGTAACAAAAATGACAATGAAAAAAAAAGGT---AGG-GT------T------------GGGG-----------GTT-ATTA-----TGTAT---AGGAAGGCTA--TGGGT-AACA-GGCACATA--A-T-A-----C-ATA-TTTTTTT-ATTaatat
gi|21 : AAATAAAT-------A--------T---GTGT---G--GGTCCTGTTA--CACCTCTTATC-C--A-A--AATAGGG---AG--GTAGGC--AGGGA-------TTttg
gi|13 : ---GTGA---G--GTTCCGTTTA--CAC-TCTTAT--A--A-A--AATAGGGT--AG--GTAGGT--AGGGA-------TTTTC--------TTTTC------------------T---T----C-----T--TTTT-T--TTGTCAGA--TAG-------------T---------AAT-TCACCAAT---AAA--G-TTACCA-GT-AGTATGCAGATC-TTGTTTTCC-ACTTTTC-----------GTATATGTGTAA-GTCAGT-TG---T---G-TGA-A--ATACAT-G-TTTCTGAatc
gi|8 : TTCCGGTTA--CGC-TCTTATT-A--A-G--AATAGGGT--AG--GTAGGT--AGGTAGGGATTTTTTTT--A-----TTTTT------------------T---A----T-----T--TTTTTT--TTGGGTCAGATGG-------------T---------AAT-TCAACAAT---AAA--T-TTGACA-AT-GA--TGCA-ATC-TTGTTTTCAAACTTTTCTTTACA------CACACGTGTAA-GTCATGTTG---T---G-TAA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AT-ATG-CAA-------------------------------GCTGAAT-GCTAT-TCTAAA---------------------ATGTCTG-ACTTG-GAGAAG--CTGGAAACT-G--CAGGCT
gi|15 : GT-TCTTAAC-A--A-A--ATTAGGGT--AG--GTAAGT--AGGGA-------TTTTC--AATTCTTTTTAATAATTAATCTTTTTTTTT---T----T-----T--TTTTTT--TTAGGTCAGATGG-------------T---------AAT-TCA---AT---AAA--G-TTGACG-GTTGA--TGCA-ATC-TTGTTTTCCAACTTTTCTT
gi|12 : --------TAG-------------T---------AAT-TCATCAAT---AGA--G-TTGACC-GT-GA--TGCA-ATCTTTGTTTTCCAACTTTCCTTTACATGTAAGT-CATGT------------TG---T---G-TAA-T--ATGCAT-G-TTTC--------------------TG-AA-ATA-CAA-TC-TCCT-GCTTT-G-AGCAAATATAC-AAGCCGAGT-GCTAT-TCTAAA--ATC----ATTGAC--TCTGATGTCTG-ACTTGAAG------CTGGAAATT-G--Ca
gi|4 : cagaAACTTTTCTTTATATACATA---A---GCAA-GTCA---TA---T---------T--GTGCAT-G-TTTCTGAAAA-------TCATTTATGGAA-ATA-CAA-TC-TAT--GCTTT-G-AACAA-TACGC-AAGCTGAGTTGCTAT-TCTAAA--CTC-------GACTTTCTGATGTCTG-ACTTGAAGGAAG--CTGGAAACT-G--AAGGCTTTGCATGCATCATGTAATTTGGGGA-A-----TA--CCAGCTAGC--T-GAGAAATAA-TGTGAATTCAAAATGATTTTTTATAATCAAAA-TAAC---T--A-TCAACAATG-TCCAATT-A---AT-G---CAA------AACAAAAA-TG----AAAAATTCC-AAAAAAAAAAGAAGTTTAGGG-TC------C------------CCCGT--------------AGTA-----T-TACCTAGTGATGGTCA--G--GT-AACC-GGAAC--C--A-C-G-----C-ATA-CTTTTTT-ATTTGGC----CT
gi|5 : ACTTTTCTTCACATACATGTAT---TATAA-GTCA---TG---TTGTG-TGA-T--ATAAAT-G-TTTCTGAAAA------CTCATTCATG-AA-AAA-GAG-TC-TACT-GCTTT-G-AAC-AATACGA-AAGCTGAGT-GCTAT-TCTAAA--ATC----CTAGACTTTCTGAT--------------GAAG--CTGGAAATT-G--CAGGCTCTGCATGTAT----------------------TATACCAGCTAGC--T-GAGAAACAA-AGTGAGTTCAAAATGATTTCTT-TAATCAAAA-TAACAATA--AGGCAACAATG-TCCATTTAA---AT-G---CA----------AAAAT-CA----ACAAATTTTGAAAAAAACA----GTTTAGGG-TCGGCGGGTGGGGGGGGGGGGGGGGGGGGTGTAGGTG-TA--TA-----T-TATCTAGGGaacat
gi|16 : TACAT-G-TGTCTGAAAAATTTAACTCATTTATA-AC-ATA-CAA-TC-TACT-TCTTT-G-GACAGATACAC-AAGCTGAAT-GTTAT-TTT-AT--ATC----CTAGACGTTCTGATGTCTG-A
gi|18 : agAT-A-TTTCTCAAA---------TATTTGTGGAA-AGA-CAACTC-TGTC-A-TTT-G-AAC-AATACAA-AAGC
gi|10 : CTGCATGCATCATTTAATCTAGGGG-A-----GA--CCAGCTAGC--TGGGGAAAC-A-TGTGAATTCAAAATTATTTCTT-CAATCACAA-TGACAAC-----GTAATGATG-TCCAATT-A---AT-A---C---------ACAGAA--TG----AAAAATTAC-----AAAATAAATGTTAAAG----------C------------GGAG-GGGGGGG---------TA-----T-TTTCTAGGGACGGTTG--G--GT-AACC-GAAAC-------C-A-----C-ATT-TTTTTTA-ATTTGGT----CTaagtccagttgcttt
gi|14 : tgaaaaGCATGCATCATGTAATTTGAGGG-A-----TA--CCAGCTAGC--T-GAGAAACAAATGCGAATTCAAAATTATTTCTT-TAATCACAA-TAACAATTTAA-GCAACAATG-TCC---T-A---GTCG---CAA------Aaa
gi|9 : ctggacaatctacagaaataaacatttatgagcCGTGTAATTTGGGGG-GAGGGGTA--CCAGTTAGC--T-GAGA--TTA-TGTGAATTCAAAAT---TTCTT--AATCAAAA-TAACAA------GCAACAAAGCTCCAAGT-A---AT-G---CAA------ATCAAAAA-TG----AAAAA-----AAATTAGAGTGAGG---GGGG-TG------T------------GGGGAGGGGGGGTGGGTG---TA-----T-TATTTAGGGGCGATCGGGT--AT-AACC-GGAAC--C--A-C-A-----C-ATA-TGGTCTTAACTAAACACATCTTATTActtagtaatgaa
gi|3 : gaaatacatgtttctgaACCA-TGTAAATTGGGG--GATTTCTT-TAATCAAAA-CAACAA------GCAACGATA-TCCAACG-G---AT-G---CAA------AACAAAAC-TG----AAAAATTCTGAAAAAAAAA----GTTTTGGG-TC------T------------AGGG---------GTATTATCTA-----T-ACTATAGGGACAGTTG--G--GT-AACC-GGAAC--C--ta
gi|20 : aggccaaataaaaaatatgtgtgggtctggttacgctcttaaaaattggataggtagggatttcttatattttggtcagatggtgatttatcaataaagttgacaatgatgtaatcttgttttccaatttttctttacatgtgcaagtcatgttgtatgattcatgcatgtttctaaaactaatttatgaaattgaatctactgctttgaacaaatatgcaactgagtgctatccttgttgaatttctgatgtctgagtagaggaaagctaaacactgcaggctctgcatgcAATTCAAAATGACTTCTT-TAATGAAAAATAACAA------GCAACAATG-TCTAAAT-A---AT-G---CAA------AACAAAA
gi|19 : AATTCAAAATGATTTTTT-AAATTAAAA--AATAACA--A-GCAACAATG-TCTAAAT-A---AT-G---CAA------AACAAAAat
gi|17 : GTTTAAGGGTC------C------------GGGGGGGGTA--------AATTAGGGCAT-AATCTAGGGAAGGTTG--G--GT-AACC-GGAAC--CTTA-C-ATATTTT-ATA-TTTTTTT-ATTTGGC----CTTat
gi|2 : TA-----T-T-TCTTGATAAGA--G--C--AT-AACC-GGAACAGC--A-A-A-----C-ATATTTTTTTT-ATTTGGC----
gi|22 : GGTCA--A--GTCAACC-GGAAC--C--A-T-A-----TTATA-TTTTTTT-ACTTGGC----CTAATggatggtagggatttttattttatttttttttttttggtcacatggtaattatcaataaagcttgacatgtgagttgtagtcttgttttccaatttttctcgatgtcaagtcaagtttgtggttataatggtttcttaaaactcatttatgaacatagcaatcttactagctctgaaacaattatgcaaagctgaaactatgtctaaatcatcccagactttctatgttgacttggacaataattgaaaaatggtaagctctgcttgcatcatgctaattgggggaatacaactacaatgagaaacaatttgaattcaaaattttcaataaaccagcagcaatgtccaaatatgcatgaatcaaatgtccaacataatgcgtaacaaaaatgacaatgaaaaaaaaaggtagggttgggggttattatgtataggaaggctatgggtaacaggcacataatacatatttttttattttg
gi|3 : aatG--C--GT-AACC-AGACC--C--A-C-A-----C-ATA-TT-TTTT-ATTTGGC----CTat
gi|6 : G--C--GT-AACC-G-AAC--C--G-CTA-----C-ATA-TTTTTTT-ATTTGGC----CTtcttaaaaattggataggtagggatttcttatattttggtcagatggtgatttatcaataaagttgacaatgatgtaatcttgttttccaatttttctttacatgtgcaagtcatgttgtatgattcatgcatgtttctaaaactaatttatgaaattgaatctactgctttgaacaaatatgcaactgagtgctatccttgttgaatttctgatgtctgagtagaggaaagctaaacactgcaggctctgcatgcaccatgtaaattgggggatttctttaatcaaaacaacaagcaacgatatccaacggatgcaaaacaaaactgaaaaattctgaaaaaaaaagttttgggtctaggggtattatctatactatagggacagttgggtaaccggaacc
gi|7 : G--C--GT-AACCCGGAACA-T--A-C-A-----T-GTA-TTTTTTT--TT-GGC----CTctcttatcaaaatagggtaaggctaggctaaggttttttttaattttatttatttattttttttttggtcaagatcataatctcatcaataaagttgacagtgatgcaattgttttccaattttcttacatacatatgtagtcatgttgttaatatgcatgtttataaaatacaacaagaattcctgctttagagcaaatactattctaaaatccattctggctttctgagtctagacttaaagaagctggaaactgtataggctctgcatgtattatgta
gi|11 : G--T--GT-AACC-AGAAC--C--AAC-A-----C-ATT-TTTTTTT--T--GGC----CTtcttatcaaaatagggtacatgtaggtaggtagttttattttaattttcattttatgttttggtcagtggtattgacatgatgctatcttgttttccaatttttctcgacatacttgtgcaagccatgttttgtaattatgcatgttttctgaatctcatttactactgcattgagcaaatagtctaaaatcattgactttctgatgtctacgtaaagaagctgaaaactgcagactctg
gi|21 : tG--T--GT-AACA-GGACC--C--A-C-A-----C-ATA-TTTATTT-tcttatcaaaaaatagggtaggcgaatgtagaattttattttatatattattttggtgtggatgtgaggatggttaattcatcaataatgattgacagttgtgcaatcttgtttccactttcttacatacatgtgtattatcatgttatatctgtgtatacatgta
Alignments
lowQualScore : 2222222 111 1111111 11111111 666666666666666666666666666666666666666666666666666666666 111111111 33333333 111 1111111 1111111 111111111 3333333 1111 11111 33333333 111111 1111 111 1111 88888888888888888888888888888888888888888888888888 1 11111 1111111
lowQualScore : 5 0000000 333 66 0 4 4 4 4 4 3 55 55555 55 1 3333333 4 33333333 666666666666666666666666666666666666666666666666666666666 4 666666666 4 8 666 55 55 4 4 1 66666666 1 77 111 8888888 3 3 55 3 3 0 2222222 000000000 4 4 4 4 3 6 4 44 4 0 666 2222222 0 4 9999 4 4 66 4 0 22222 77 77 5 88 5 66 4 55555555 4 1 777 4 777 111111 4 77 2222 111 77 999 9999 0 5 88888888888888888888888888888888888888888888888888 3 5 3 66 5 33333 4444444
lowQualScore : . ....... ... .. . . . . . . . .. ..... .. . ....... . ........ ......................................................... . ......... . . ... .. .. . . . ........ . .. ... ....... . . .. . . . ....... ......... . . . . . . . .. . . ... ....... . . .... . . .. . . ..... .. .. . .. . .. . ........ . . ... . ... ...... . .. .... ... .. ... .... . . .................................................. . . . .. . ..... .......
lowQualScore : 0 1111111 888 99 9 4 0 0 0 0 4 55 99999 55 0 0000000 4 77777777 333333333333333333333333333333333333333333333333333333333 0 000000000 0 0 222 55 55 0 0 2 55555555 4 77 444 7777777 6 6 00 3 3 5 4444444 999999999 0 0 0 0 4 4 0 77 0 8 222 1111111 7 0 2222 4 4 11 4 5 55555 99 99 7 44 0 44 0 00000000 0 0 000 0 000 555555 4 33 1111 333 99 666 1111 1 0 44444444444444444444444444444444444444444444444444 4 0 9 99 0 11111 6666666
consensus : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--T--AGGT--AGGGA-------TTT-TT--A-----TTTTA------------------T---TT-----TTTTTTTT-T----------A-------TGG-T---------AAT-TCATCAATAAAG-TTGACA-G-TG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATC----CTAGACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAA--AAAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG-G--GGT-TA-----G--TATTATCTAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
Reference ( family-3855 ) : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--T--AGGT--AGGNA-------TTT-TT--A-----TTTTA------------------T---TT-----TTTTTNTT-T----------A-------TGG-T---------AAT-TCATCAATAAAG-TTGACA-G-TG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATC----CT-GACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTNCGAAA--AAA--AAAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG-G--GGT-TA-----A--TATTATCTAGGGACGGT-CGCG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
gi|1 : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCTGG-TTATG-C-TCTTATC-AA-AAATAGGATGG--G--T--AGGT--ACGTA-------TTT-TT--A-----TTTTA------------------T---TT-----TTTTTATT-T------------------TGG-T---------AAT-TCATCAATAAAG-TTGATA-G-TG--G--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGTACATGTGTAAGTCA---TG---T---G-TGA-T--ATACAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACC-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATC----CTAGACTTTCTGATGTTT-AACTTGAGGGA-ATCTGAAAACT-G--CAGGCTCTGCATGCATCATG-TAAATTAGGGGA-----TATTCCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATTAAAA-TAACAATT---A--GCAACAATG-TCCAATTA---A-TG---CAA------AACA-AAATTG----AAAAATTCCGAAA--AAA--AAAAAAGGTTTA-AGGTT--TGG--------------GGTGTGTGTGT-G--TGT-TA-----AT-TATTATCTAGGGAAGGT-CGTG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTAGGCCTTATTA
gi|10 : CTGCATGCATCATT-TAATCTAGGGGA-----GA--CCAGCTAGC--TGGGGAAAC--ATGTGAATTCAAAATTATTTCTT-CAATCACAA-TGACAA-C------GTAATGATG-TCCAATTA---A-TA---C---------ACA-GAAT-G----AAAAATTAC--AA--AAT--AAATG----TTA-AAG----CGG--------------AG-G-----GG-G--GG---------G--TATTTTCTAGGGACGGT-TGGG--T-AACCGAAAC------CA-----C-ATTTTTTTTAATTTGGTCT
gi|11 : tgaaaaAGGCCAAA-AAAAAA---A---TGTGTT--G--GTTCTGG-TTACA-C-TCTTATCAAA-AAATAGGGTAG--G--CGAATGT--AGAA---------TT-TT--A-----TTTTA------------------TATATTA----TTTTGGTG-TGGATGTGAGGA-------TGGTT---------AAT-TCATCAATAATGATTGACA-G-TT--G--TGCA-ATC-TTGTTTCC--ACTTT--CTTACATACATGTGTATTATCATGTTA---TATC-T---G-TG--T--ATACAT-G-Taa
gi|12 : t----------A-------TAG-T---------AAT-TCATCAATAGAG-TTGACC-G-TG--A--TGCA-ATCTTTGTTTTCCAACTTTCCTTTACATGTAAGT-CATGT-----------TG---T---G-TAA-T--ATGCAT-G-TTTC--------------------TG-AA-ATA-CAATC-TCCT-GCTTT-G-AGCAAATATAC-AAGCCGAGT-GCTAT-TCTAAA--ATCA---TT-GAC--TCTGATGTCT-GACTT----GA-AGCTGGAAATT-G--Ca
gi|13 : cagGTGA---G--GTTCCGT-TTACA-C-TCTTAT--AA-AAATAGGGTAG--G--T--AGGT--AGGGA-------TTT-TC--------TTTTC------------------T---TC-----TTTTTTTTGTCAG-------A-------TAG-T---------AAT-TCACCAATAAAG-TTACCA-G-TAGTA--TGCAGATC-TTGTTTTCC-ACTTTTCGT---AT--------ATGTGTAAGTCAGT-TG---T---G-TGA-A--ATACAT-G-TTTCTGA
gi|14 : GCATGCATCATG-TAATTTGAGGGA-----TA--CCAGCTAGC--T-GAGAAACAAATGCGAATTCAAAATTATTTCTT-TAATCACAA-TAACAA-TTTAA--GCAACAATG-TCCTAGT------CG---CAA------A
gi|15 : ctggacaatctacagaaataaacatttatgagcG-T-TCTTAAC-AA-AATTAGGGTAG--G--T--AAGT--AGGGA-------TTT-TC--AATTCTTTTTAATAATTAATCTTTTTTTTT---TT-----TTTTTTTT-T----------AGGTCAGATGG-T---------AAT-TCA---ATAAAG-TTGACG-GTTG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTcttagtaatgaa
gi|16 : TACAT-G-TGTCTGAAAAATTTAACTCATTTATA-AC-ATA-CAATC-TACT-TCTTT-G-GACAGATACAC-AAGCTGAAT-GTTAT-TTT-AT--ATC----CTAGACGTTCTGATGTCT-GAa
gi|17 : agGTTTAAGGGTC--CGG--------------GG-G-----GG-GTAAAT-TA-----GGGCATAATCTAGGGAAGGT-TGGG--T-AACCGGAAC--CTTACATATTTT-ATATTTTTTTATTTGGCCTT
gi|19 : AATTCAAAATGATTTTTT-AAATTAAAA--AATAA-CA--A--GCAACAATG-TCTAAATA---A-TG---CAA------AACA-AAA
gi|2 : GGCCAAATAAAAAA---AATATGTTT---GCTGTTCCGG-TTATG-C-TCTTATC-AAGAAATAGGAT-----------GGT--AGGGA-------TTT-TT--A-----TTTTA------------------T---TT-----TTTTTTTT-TTGGTCAC---A-------TGG-T---------AAT-T-ATCAATAAAGCTTGACATG-TG--AGTTGTA-GTC-TTGTTTTCCAATTTTTCT---CG---ATGT-CAAGT-CAAGTT----TG---T---G--GT-T--ATA-ATGG-TTTCTTAAAA------CTCATTTATG-AACATAGCAATCTTACTAGCTCT-GAAACAATTATGCAAAGCTGAA--ACTATGTCTAAATCATC----CCAGACTTTCT-ATGT-T-GACTTGGACAATAATTGAAAAATGG--TAAGCTCTGCTTGCATCATGCTAATTGGGGGAA-----TA---CAACTA-CAAT-GAGAAAC-AATTTGAATTCAAAAT--TTTC----------AA-TAA-AC-C---A--GCAGCAATG-TCCAAATATGCA-TGAATCAAATGTCCAACATAATGCGTAACAAAAATGACAATG--AAA--AAAAAAGG--TA-GGGTT----------------------------GG-G--GGT-TA-----T--TA-TGTATAGGAAGGCTATGGG--T-AACAGGCACATA--ATA-----C-ATATTTTTTTATTTat
gi|20 : AATTCAAAATGACTTCTT-TAATGAAAAATAACAA--------GCAACAATG-TCTAAATA---A-TG---CAA------AACA-AAAtg
gi|21 : AAATAAATA--------TGTGT---G--GGTCCTG-TTACACC-TCTTATC-CA-AAATAGGG-AG--G--T--AGGC--AGGGA-------TTat
gi|22 : ATGGT-CAAG--TCAACCGGAAC--C--ATA-----TTATATTTTTTTACTTGGCCTAATatc
gi|3 : aAGGCCAAATAAAAAAT--A---TGTGT---G--GGTCTGG-TTACG-C-TCTTA----A-AAAT----TGG--A--T--AGGT--AGGGA-------TTTCTT--A-----T---A------------------T---TT-----TGGTCAG-------------A-------TGG-T---------GAT-TTATCAATAAAG-TTGACA-A-TG--A--TGTA-ATC-TTGTTTTCCAATTTTTCTTTACAT----------GTGCAAGTCA---TG---TTGTA-TGA-TTCATGCAT-G-TTTCT-AAAA------CTAATTTATG-AA-ATT-GAATC-TACT-GCTTT-G-AACAAATATGC-AA-CTGAGT-GCTAT-CCT------TG----TT-GAATTTCTGATGTCT-GAGTAGAGGAA-AGCTAAACACT-G--CAGGCTCTGCATGCACCATG-TAAATTGGGGGA-----Tat
gi|3 : AC-CATGTAAATTGGGG--GATTTCTT-TAATCAAAA-CAACAA--------GCAACGATA-TCCAACGG---A-TG---CAA------AACA-AAACTG----AAAAATTCTGAAA--AAA--AAA----GTTTT-GGGTC--T-----------------A-G-----GG-G--TAT-TATCT--A--TACTA--TAGGGACAGT-TGGG--T-AACCGGAAC--C--ttctttaatcaaaacaacaagcaacgatatccaacggatgcaaaacaaaactgaaaaattctgaaaaaaaaagttttgggtctaggggtattatctatactatagggacagttgggtaaccggaacc
gi|4 : aggccaaataaaaaatatgtgtgggtctggttacgctcttaaaaattggataggtagggatttcttatattttggtcagatggtgatttatcaataaagttgacaatgatgtaatcttgttttccaatttttctttacatgtgcaagtcatgttgtatgattcatgcatgtttctaaaactaatttatgaaattgaatctactgctttgaacaaatatgcaactgagtgctatccttgttgaatttctgatgtctgagtagaggaaagctaaacactgcaggctctgcatgcAACTTTTCTTTATATACATA---A---GCAAGTCA---TA---T---------T--GTGCAT-G-TTTCTGAAAA-------TCATTTATGGAA-ATA-CAATC-TA-T-GCTTT-G-AACAA-TACGC-AAGCTGAGTTGCTAT-TCTAAA--CTC-------GACTTTCTGATGTCT-GACTTGAAGGA-AGCTGGAAACT-G--AAGGCTTTGCATGCATCATG-TAATTTGGGGAA-----TA--CCAGCTAGC--T-GAGAAAT-AATGTGAATTCAAAATGATTTTTTATAATCAAAA-TAAC---T---A--TCAACAATG-TCCAATTA---A-TG---CAA------AACA-AAAATG----AAAAATTCC-AAA--AAA--AAAAGAAGTTTA-GGGTC--CCC--------------CG-----------------TA-----G--TATTACCTAGTGATGGT-CAGG--T-AACCGGAAC--C--ACG-----C-ATACTTTTTTATTTGGCCT
gi|5 : ACTTTTCTTCACATACATGT--AT-TATAAGTCA---TG---TTGTG-TGA-T--ATAAAT-G-TTTCTGAAAA------CTCATTCATG-AA-AAA-GAGTC-TACT-GCTTT-G-AACAA-TACGA-AAGCTGAGT-GCTAT-TCTAAA--ATC----CTAGACTTTCTGATG--------------A-AGCTGGAAATT-G--CAGGCTCTGCATGTATTAT--------------------A--CCAGCTAGC--T-GAGAAAC-AAAGTGAGTTCAAAATGATTTCTT-TAATCAAAA-TAACAA-T---AAGGCAACAATG-TCCATTTA---AATG---CAA------AA-----ATCA----ACAAATTTTGAAA--AA---AACA---GTTTA-GGGTCGGCGGGTGGGGGGGGGGGGGG-G-----GG-G--GGTGTAGGTGTA--TATTATCTAGGGaacat
gi|6 : AGGCCAAATAAAAAA---A---TATGTAGCG--GTTC-GG-TTACG-CCTCTTATC-AA-AA-TAGGGTAA--GGCT--AGGCTAAGGTT-------TTT-TTTAA-----TTTTA------------------T---TTATTTATTTTTTTT-T------------------TGG-TCAAGATCATAATCTCATCAATAAAG-TTGACA-G-TG--A--TGCA-A---TTGTTTTCCAA-TTTTC-TTACATACAT----ATGT---AGTCA---TGT--T---GTTAA-T--ATGCAT-G-TTTATAAAA-------------TACA-AC-A-A-GAAT--TCCT-GCTTTAG-AGCAAATA---------------CTAT-TCTAAA--ATCCATTCT-GGCTTTCTGA-GTCTAGACTT-AAAGA-AGCTGGAAACT-GTATAGGCTCTGCATGTATTATG-TA
gi|7 : AGGCCAAA-AAAAAATACA---TGTAT---G---TTCCGGGTTACG-C-TCTTATC-AA-AA-TAGGGTACATG--T--AGGT--AGGTA-------GTT-TT--A-----TTTTA------------------A---TT-----TTCAT-TT-T----------A-------TGT-T-----------T-TGGTCAGTGGTA-TTGACA---TG--A--TGCT-ATC-TTGTTTTCCAATTTTTCTCGACATAC-T-----TGTGCAAGCCA---TGTTTT---G-TAATT--ATGCAT-GTTTTCTG-AAT------CTCATTTA--------------C-TACT-GCATT-G-AGCAAATA-G------------------TCTAAA--ATCA---TT-GACTTTCTGATGTCT--ACGT-AAAGA-AGCTGAAAACT-G--CAGACTCTG
gi|8 : TTCCGG-TTACG-C-TCTTATT-AA-GAATAGGGTAG--G--T--AGGT--AGGTAGGGATTTTTT-TT--A-----TTTTT------------------T---AT-----TTTTTTTT-TGGGTCAG---A-------TGG-T---------AAT-TCAACAATAAAT-TTGACA-A-TG--A--TGCA-ATC-TTGTTTTCAAACTTTTCTTTACACA------CACGTGTAAGTCATGTTG---T---G-TAA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG--------------------------------ATATGC-AAGCTGAAT-GCTAT-TCTAAA---------------------ATGTCT-GACTTG-GAGA-AGCTGGAAACT-G--CAGGCT
gi|9 : CGTG-TAATTTGGGGGGAGGGGTA--CCAGTTAGC--T-GAGA--T-TATGTGAATTCAAAAT---TTCTT--AATCAAAA-TAACAA--------GCAACAAAGCTCCAAGTA---A-TG---CAA------ATCA-AAAATG----AAAAA-----AAATTAGAGTGAGGGGGGTGTG-GGG----AGG--------------GG-G-----GGTG--GGT--------G--TATTATTTAGGGGCGAT-CGGGTAT-AACCGGAAC--C--ACA-----C-ATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTCTCAAATATTTGTGGAAAGACAACTCTGTCATTTGAACAATACAAAAGCAAGTCCAGTTGCTTT
Alignments
lowQualScore : 2222222 111 222222222 333333333333333333 11111 66666666666666666666666666666666666666666666 33333333 111 111 1111111 111111111 2222222 1111 11111 33333333 111111 1111 111 1111 9999999999999999999999999999999999999999999999999 1111111 11111 1111111
lowQualScore : 5 0000000 333 66 0 4 4 4 4 4 3 55 55 4 8888 888888888 222222222222222222 11111 33333333333333333333333333333333333333333333 4 8 4 4 55 55 4 4 1 22222222 77 777 555 666 3 3 55 3 3 0 2222222 000000000 4 4 4 4 3 6 4 44 4 0 666 0000000 0 4 9999 4 4 66 4 0 22222 77 77 5 88 5 66 4 55555555 4 1 777 4 777 111111 4 77 2222 111 77 1 77 9999 0 5 0000000000000000000000000000000000000000000000000 6666666 3 5 66 5 33333 4444444
lowQualScore : . ....... ... .. . . . . . . . .. .. . .... ......... .................. ..... ............................................ . . . . .. .. . . . ........ .. ... ... ... . . .. . . . ....... ......... . . . . . . . .. . . ... ....... . . .... . . .. . . ..... .. .. . .. . .. . ........ . . ... . ... ...... . .. .... ... .. . .. .... . . ................................................. ....... . . .. . ..... .......
lowQualScore : 0 1111111 888 99 9 4 0 0 0 0 4 55 55 0 5555 666666666 888888888888888888 11111 77777777777777777777777777777777777777777777 0 0 0 0 55 55 0 0 2 00000000 77 777 000 444 6 6 00 3 3 5 4444444 999999999 0 0 0 0 4 4 0 77 0 8 222 7777777 7 0 2222 4 4 11 4 5 55555 99 99 7 44 0 44 0 00000000 0 0 000 0 000 555555 4 33 1111 333 99 7 99 1111 1 0 1111111111111111111111111111111111111111111111111 2222222 4 0 99 0 11111 6666666
consensus : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--T-------A-------TGG-------------T---------AAT-TCATCAATAAAG-TTGACA-GT-G--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAAA--AAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG--G--GGT-TAG-----TATTATC-------TAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
Reference ( family-3855 ) : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--T-------A-------TGG-------------T---------AAT-TCATCAATAAAG-TTGACA-GT-G--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAAA--AAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG--G--GGT-TAG-----TATTATC-------TAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
gi|1 : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCTGG-TTATG-C-TCTTATC-AA-AAATAGGATGG--G--TAGG-TACG----TATTTTT---A-----TTTTA------------------TTT-----TTTTTATT--T---------------TGG-------------T---------AAT-TCATCAATAAAG-TTGATA-GT-G--G--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGTACATGTGTAAGTCA---TG---T---G-TGA-T--ATACAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACC-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTTT-AACTTGAGGGA-ATCTGAAAACT-G--CAGGCTCTGCATGCATCATG-TAAATTAGGGGA-----TATTCCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATTAAAA-TAACAATT---A--GCAACAATG-TCCAATTA---A-TG---CAA------AACA-AAATTG----AAAAATTCCGAAA--AAAA--AAAAAGGTTTA-AGGTT--TGG--------------GGTGTGTGTGT--G--TGT-TAAT----TATTATC-------TAGGGAAGGT-CGTG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTAGGCCTTATTA
gi|10 : CTGCATGCATCATT-TAATCTAGGGGA-----GA--CCAGCTAGC--TGGGGAAAC--ATGTGAATTCAAAATTATTTCTT-CAATCACAA-TGACAA-C------GTAATGATG-TCCAATTA---A-TA---C---------ACA-GAAT-G----AAAAATTAC--AA--AATA--AATG----TTA-AAG----CGG--------------AG-G-----GG--G--GG----G-----TATTTTC-------TAGGGACGGT-TGGG--T-AACCGAAAC------CA-----C-ATTTTTTTTAATTTGGTCT
gi|11 : tgaaaaAGGCCAAA-AAAAAA---A---TGTGTT--G--GTTCTGG-TTACA-C-TCTTATCAAA-AAATAGGGTAG--G--CGAA-TGTA----GAATTTT---A-----TTTTA------------------TAT-----ATTATTTTGGT-------G-------TGGATGTGAGGATGGTT---------AAT-TCATCAATAATGATTGACA-GT-T--G--TGCA-ATC-TTGTTTCC--ACTTT--CTTACATACATGTGTATTATCATGTTA---TATC-T---G-TG--T--ATACAT-G-Taa
gi|12 : t-------A-------TAG-------------T---------AAT-TCATCAATAGAG-TTGACC-GT-G--A--TGCA-ATCTTTGTTTTCCAACTTTCCTTTACATGTAAGT-CATGT-----------TG---T---G-TAA-T--ATGCAT-G-TTTC--------------------TG-AA-ATA-CAATC-TCCT-GCTTT-G-AGCAAATATAC-AAGCCGAGT-GCTAT-TCTAAA--ATCATT----GAC--TCTGATGTCT-GACTT----GA-AGCTGGAAATT-G--Ca
gi|13 : cagGTGA---G--GTTCCGT-TTACA-C-TCTTAT--AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTC---------TTTTC------------------TTC-----TTTTTTTTG-TCAG----A-------TAG-------------T---------AAT-TCACCAATAAAG-TTACCA-GT-AGTA--TGCAGATC-TTGTTTTCC-ACTTTTCGT---AT--------ATGTGTAAGTCAGT-TG---T---G-TGA-A--ATACAT-G-TTTCTGA
gi|14 : GCATGCATCATG-TAATTTGAGGGA-----TA--CCAGCTAGC--T-GAGAAACAAATGCGAATTCAAAATTATTTCTT-TAATCACAA-TAACAA-TTTAA--GCAACAATG-TCCTAGT------CG---CAA------A
gi|15 : ctggacaatctacagaaataaacatttatgagcG-T-TCTTAAC-AA-AATTAGGGTAG--G--TAAG-TAGG----GATTTTC---AATTCTTTTTAATAATTAATCTTTTTTTTTTT-----TTTTTTTT--T-------AGGTCAGATGG-------------T---------AAT-TCA---ATAAAG-TTGACG-GTTG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTcttagtaatgaa
gi|16 : TACAT-G-TGTCTGAAAAATTTAACTCATTTATA-AC-ATA-CAATC-TACT-TCTTT-G-GACAGATACAC-AAGCTGAAT-GTTAT-TTT-AT--ATCCTA----GACGTTCTGATGTCT-GAa
gi|17 : agGTTTAAGGGTC--CGG--------------GG-G-----GG--GTAAAT-TAGGG---CATAATC-------TAGGGAAGGT-TGGG--T-AACCGGAAC--CTTACATATTTT-ATATTTTTTTATTTGGCCTT
gi|19 : AATTCAAAATGATTTTTT-AAATTAAAA--AATAA-CA--A--GCAACAATG-TCTAAATA---A-TG---CAA------AACA-AAA
gi|2 : GGCCAAATAAAAAA---AATATGTTT---GCTGTTCCGG-TTATG-C-TCTTATC-AAGAAATAGGAT---------GG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--TTGGTCACA-------TGG-------------T---------AAT-T-ATCAATAAAGCTTGACATGT-G--AGTTGTA-GTC-TTGTTTTCCAATTTTTCT---CG---ATGT-CAAGT-CAAGTT----TG---T---G--GT-T--ATA-ATGG-TTTCTTAAAA------CTCATTTATG-AACATAGCAATCTTACTAGCTCT-GAAACAATTATGCAAAGCTGAA--ACTATGTCTAAATCATCCCA----GACTTTCT-ATGT-T-GACTTGGACAATAATTGAAAAATGG--TAAGCTCTGCTTGCATCATGCTAATTGGGGGAA-----TA---CAACTA-CAAT-GAGAAAC-AATTTGAATTCAAAAT--TTTC----------AA-TAA-AC-C---A--GCAGCAATG-TCCAAATATGCA-TGAATCAAATGTCCAACATAATGCGTAACAAAAATGACAATG--AAAA--AAAAAGG--TA-GGGTT----------------------------GG--G--GGT-TAT-----TA-TGTA-------TAGGAAGGCTATGGG--T-AACAGGCACATA--ATA-----C-ATATTTTTTTATTTat
gi|20 : AATTCAAAATGACTTCTT-TAATGAAAAATAACAA--------GCAACAATG-TCTAAATA---A-TG---CAA------AACA-AAAtg
gi|21 : AAATAAATA--------TGTGT---G--GGTCCTG-TTACACC-TCTTATC-CA-AAATAGGG-AG--G--TAGG-CAGG----GATTat
gi|22 : ATGGT-CAAG--TCAACCGGAAC--C--ATA-----TTATATTTTTTTACTTGGCCTAATatc
gi|3 : aAGGCCAAATAAAAAAT--A---TGTGT---G--GGTCTGG-TTACG-C-TCTTA----A-AAAT----TGG--A--TAGG-TAGG----GATTTCT------------TA------------------TAT-----TTTGGTCA--G-------A-------TGG-------------T---------GAT-TTATCAATAAAG-TTGACA-AT-G--A--TGTA-ATC-TTGTTTTCCAATTTTTCTTTA----------CATGTGCAAGTCATGTTG---T---A-TGA-TTCATGCAT-G-TTTCT-AAAA------CTAATTTATG-AA-ATT-GAATC-TACT-GCTTT-G-AACAAATATGC-AA-CTGAGT-GCTAT-CCT------TGTT-----GAATTTCTGATGTCT-GAGTAGAGGAA-AGCTAAACACT-G--CAGGCTCTGCATGCACCATG-TAAATTGGGGGA-----Tat
gi|3 : AC-CATGTAAATTGGGG--GATTTCTT-TAATCAAAA-CAACAA--------GCAACGATA-TCCAACGG---A-TG---CAA------AACA-AAACTG----AAAAATTCTGAAA--AAAA--AA----GTTTT-GGGTC--TAG--------------GG--------------------G-----TATTATCTATACTATAGGGACAGT-TGGG--T-AACCGGAAC--C--ttctttaatcaaaacaacaagcaacgatatccaacggatgcaaaacaaaactgaaaaattctgaaaaaaaaagttttgggtctaggggtattatctatactatagggacagttgggtaaccggaacc
gi|4 : aggccaaataaaaaatatgtgtgggtctggttacgctcttaaaaattggataggtagggatttcttatattttggtcagatggtgatttatcaataaagttgacaatgatgtaatcttgttttccaatttttctttacatgtgcaagtcatgttgtatgattcatgcatgtttctaaaactaatttatgaaattgaatctactgctttgaacaaatatgcaactgagtgctatccttgttgaatttctgatgtctgagtagaggaaagctaaacactgcaggctctgcatgcAACTTTTCTTTATATACATA---A---GCAAGTCA---TA---T---------T--GTGCAT-G-TTTCTGAAAA-------TCATTTATGGAA-ATA-CAATC-TA-T-GCTTT-G-AACAA-TACGC-AAGCTGAGTTGCTAT-TCTAAA--CTC-------GACTTTCTGATGTCT-GACTTGAAGGA-AGCTGGAAACT-G--AAGGCTTTGCATGCATCATG-TAATTTGGGGAA-----TA--CCAGCTAGC--T-GAGAAAT-AATGTGAATTCAAAATGATTTTTTATAATCAAAA-TAAC---T---A--TCAACAATG-TCCAATTA---A-TG---CAA------AACA-AAAATG----AAAAATTCC-AAA--AAAA--AAAGAAGTTTA-GGGTC--CCC--------------CG------------------TAG-----TATTACC-------TAGTGATGGT-CAGG--T-AACCGGAAC--C--ACG-----C-ATACTTTTTTATTTGGCCT
gi|5 : ACTTTTCTTCACATACATGT--AT-TATAAGTCA---TG---TTGTG-TGA-T--ATAAAT-G-TTTCTGAAAA------CTCATTCATG-AA-AAA-GAGTC-TACT-GCTTT-G-AACAA-TACGA-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATG--------------A-AGCTGGAAATT-G--CAGGCTCTGCATGTATTAT--------------------A--CCAGCTAGC--T-GAGAAAC-AAAGTGAGTTCAAAATGATTTCTT-TAATCAAAA-TAACAA-T---AAGGCAACAATG-TCCATTTA---AATG---CAA------AA-----ATCA----ACAAATTTTGAAA--AA-A--ACA---GTTTA-GGGTCGGCGGGTGGGGGGGGGGGGGG-G-----GG--G--GGTGTAGGTGTATATTATC-------TAGGGaacat
gi|6 : AGGCCAAATAAAAAA---A---TATGTAGCG--GTTC-GG-TTACG-CCTCTTATC-AA-AA-TAGGGTAA--GGCTAGGCTAAG----GTTTTTTTTAA-----TTTTA------------------TTTATTTATTTTTTTT--T---------------TGG-------------TCAAGATCATAATCTCATCAATAAAG-TTGACA-GT-G--A--TGCA-A---TTGTTTTCCAA-TTTTC-TTACATACAT----ATGT---AGTCA---TGT--T---GTTAA-T--ATGCAT-G-TTTATAAAA-------------TACA-AC-A-A-GAAT--TCCT-GCTTTAG-AGCAAATA---------------CTAT-TCTAAA--ATCC-ATTCTGGCTTTCTGA-GTCTAGACTT-AAAGA-AGCTGGAAACT-GTATAGGCTCTGCATGTATTATG-TA
gi|7 : AGGCCAAA-AAAAAATACA---TGTAT---G---TTCCGGGTTACG-C-TCTTATC-AA-AA-TAGGGTACATG--TAGG-TAGG----TAGTTTT---A-----TTTTA------------------ATT-----TTCATTTT----------A-------TGT-------------T-----------T-TGGTCAGTGGTA-TTGACA--T-G--A--TGCT-ATC-TTGTTTTCCAATTTTTCTCGACATAC-T-----TGTGCAAGCCA---TGTTTT---G-TAATT--ATGCAT-GTTTTCTG-AAT------CTCATTTA--------------C-TACT-GCATT-G-AGCAAATA-G------------------TCTAAA--ATCATT----GACTTTCTGATGTCT--ACGT-AAAGA-AGCTGAAAACT-G--CAGACTCTG
gi|8 : TTCCGG-TTACG-C-TCTTATT-AA-GAATAGGGTAG--G--TAGG-TAGGTAGGGATTTTTTTTA-----TTTTT------------------TAT-----TTTTTTTT--TGGGTCAGA-------TGG-------------T---------AAT-TCAACAATAAAT-TTGACA-AT-G--A--TGCA-ATC-TTGTTTTCAAACTTTTCTTTACACA------CACGTGTAAGTCATGTTG---T---G-TAA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG--------------------------------ATATGC-AAGCTGAAT-GCTAT-TCTAAA---------------------ATGTCT-GACTTG-GAGA-AGCTGGAAACT-G--CAGGCT
gi|9 : CGTG-TAATTTGGGGGGAGGGGTA--CCAGTTAGC--T-GAGA--T-TATGTGAATTCAAAAT---TTCTT--AATCAAAA-TAACAA--------GCAACAAAGCTCCAAGTA---A-TG---CAA------ATCA-AAAATG----AAAAA-----AAATTAGAGTGAGGGGGGTGTG-GGG-----AG--------------GG-G-----GGGTG--GGT---G-----TATTATT-------TAGGGGCGAT-CGGGTAT-AACCGGAAC--C--ACA-----C-ATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTCTCAAATATTTGTGGAAAGACAACTCTGTCATTTGAACAATACAAAAGCAAGTCCAGTTGCTTT
Alignments
lowQualScore : 2222222 111 222222222 333333333333333333 11111 66666666666666666666666666666666666666666666 33333333 111 111 1111111 111111111 2222222 1111 11111 33333333 111111 1111 111 1111 9999999999999999999999999999999999999999999999999 1111111 11111 1111111
lowQualScore : 5 0000000 333 66 0 4 4 4 4 4 3 55 55 4 8888 888888888 222222222222222222 11111 33333333333333333333333333333333333333333333 4 8 4 4 55 55 4 4 1 22222222 77 777 555 666 3 3 55 3 3 0 2222222 000000000 4 4 4 4 3 6 4 44 4 0 666 0000000 0 4 9999 4 4 66 4 0 22222 77 77 5 88 5 66 4 55555555 4 1 777 4 777 111111 4 77 2222 111 77 1 77 9999 0 5 0000000000000000000000000000000000000000000000000 6666666 3 5 66 5 33333 4444444
lowQualScore : . ....... ... .. . . . . . . . .. .. . .... ......... .................. ..... ............................................ . . . . .. .. . . . ........ .. ... ... ... . . .. . . . ....... ......... . . . . . . . .. . . ... ....... . . .... . . .. . . ..... .. .. . .. . .. . ........ . . ... . ... ...... . .. .... ... .. . .. .... . . ................................................. ....... . . .. . ..... .......
lowQualScore : 0 1111111 888 99 9 4 0 0 0 0 4 55 55 0 5555 666666666 888888888888888888 11111 77777777777777777777777777777777777777777777 0 0 0 0 55 55 0 0 2 00000000 77 777 000 444 6 6 00 3 3 5 4444444 999999999 0 0 0 0 4 4 0 77 0 8 222 7777777 7 0 2222 4 4 11 4 5 55555 99 99 7 44 0 44 0 00000000 0 0 000 0 000 555555 4 33 1111 333 99 7 99 1111 1 0 1111111111111111111111111111111111111111111111111 2222222 4 0 99 0 11111 6666666
consensus : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--T-------A-------TGG-------------T---------AAT-TCATCAATAAAG-TTGACA-GT-G--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAAA--AAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG--G--GGT-TAG-----TATTATC-------TAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
Reference ( family-3855 ) : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--T-------A-------TGG-------------T---------AAT-TCATCAATAAAG-TTGACA-GT-G--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAAA--AAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG--G--GGT-TAG-----TATTATC-------TAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
gi|1 : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCTGG-TTATG-C-TCTTATC-AA-AAATAGGATGG--G--TAGG-TACG----TATTTTT---A-----TTTTA------------------TTT-----TTTTTATT--T---------------TGG-------------T---------AAT-TCATCAATAAAG-TTGATA-GT-G--G--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGTACATGTGTAAGTCA---TG---T---G-TGA-T--ATACAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACC-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTTT-AACTTGAGGGA-ATCTGAAAACT-G--CAGGCTCTGCATGCATCATG-TAAATTAGGGGA-----TATTCCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATTAAAA-TAACAATT---A--GCAACAATG-TCCAATTA---A-TG---CAA------AACA-AAATTG----AAAAATTCCGAAA--AAAA--AAAAAGGTTTA-AGGTT--TGG--------------GGTGTGTGTGT--G--TGT-TAAT----TATTATC-------TAGGGAAGGT-CGTG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTAGGCCTTATTA
gi|10 : CTGCATGCATCATT-TAATCTAGGGGA-----GA--CCAGCTAGC--TGGGGAAAC--ATGTGAATTCAAAATTATTTCTT-CAATCACAA-TGACAA-C------GTAATGATG-TCCAATTA---A-TA---C---------ACA-GAAT-G----AAAAATTAC--AA--AATA--AATG----TTA-AAG----CGG--------------AG-G-----GG--G--GG----G-----TATTTTC-------TAGGGACGGT-TGGG--T-AACCGAAAC------CA-----C-ATTTTTTTTAATTTGGTCT
gi|11 : tgaaaaAGGCCAAA-AAAAAA---A---TGTGTT--G--GTTCTGG-TTACA-C-TCTTATCAAA-AAATAGGGTAG--G--CGAA-TGTA----GAATTTT---A-----TTTTA------------------TAT-----ATTATTTTGGT-------G-------TGGATGTGAGGATGGTT---------AAT-TCATCAATAATGATTGACA-GT-T--G--TGCA-ATC-TTGTTTCC--ACTTT--CTTACATACATGTGTATTATCATGTTA---TATC-T---G-TG--T--ATACAT-G-Taa
gi|12 : t-------A-------TAG-------------T---------AAT-TCATCAATAGAG-TTGACC-GT-G--A--TGCA-ATCTTTGTTTTCCAACTTTCCTTTACATGTAAGT-CATGT-----------TG---T---G-TAA-T--ATGCAT-G-TTTC--------------------TG-AA-ATA-CAATC-TCCT-GCTTT-G-AGCAAATATAC-AAGCCGAGT-GCTAT-TCTAAA--ATCATT----GAC--TCTGATGTCT-GACTT----GA-AGCTGGAAATT-G--Ca
gi|13 : cagGTGA---G--GTTCCGT-TTACA-C-TCTTAT--AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTC---------TTTTC------------------TTC-----TTTTTTTTG-TCAG----A-------TAG-------------T---------AAT-TCACCAATAAAG-TTACCA-GT-AGTA--TGCAGATC-TTGTTTTCC-ACTTTTCGT---AT--------ATGTGTAAGTCAGT-TG---T---G-TGA-A--ATACAT-G-TTTCTGA
gi|14 : GCATGCATCATG-TAATTTGAGGGA-----TA--CCAGCTAGC--T-GAGAAACAAATGCGAATTCAAAATTATTTCTT-TAATCACAA-TAACAA-TTTAA--GCAACAATG-TCCTAGT------CG---CAA------A
gi|15 : ctggacaatctacagaaataaacatttatgagcG-T-TCTTAAC-AA-AATTAGGGTAG--G--TAAG-TAGG----GATTTTC---AATTCTTTTTAATAATTAATCTTTTTTTTTTT-----TTTTTTTT--T-------AGGTCAGATGG-------------T---------AAT-TCA---ATAAAG-TTGACG-GTTG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTcttagtaatgaa
gi|16 : TACAT-G-TGTCTGAAAAATTTAACTCATTTATA-AC-ATA-CAATC-TACT-TCTTT-G-GACAGATACAC-AAGCTGAAT-GTTAT-TTT-AT--ATCCTA----GACGTTCTGATGTCT-GAa
gi|17 : agGTTTAAGGGTC--CGG--------------GG-G-----GG--GTAAAT-TAGGG---CATAATC-------TAGGGAAGGT-TGGG--T-AACCGGAAC--CTTACATATTTT-ATATTTTTTTATTTGGCCTT
gi|19 : AATTCAAAATGATTTTTT-AAATTAAAA--AATAA-CA--A--GCAACAATG-TCTAAATA---A-TG---CAA------AACA-AAA
gi|2 : GGCCAAATAAAAAA---AATATGTTT---GCTGTTCCGG-TTATG-C-TCTTATC-AAGAAATAGGAT---------GG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--TTGGTCACA-------TGG-------------T---------AAT-T-ATCAATAAAGCTTGACATGT-G--AGTTGTA-GTC-TTGTTTTCCAATTTTTCT---CG---ATGT-CAAGT-CAAGTT----TG---T---G--GT-T--ATA-ATGG-TTTCTTAAAA------CTCATTTATG-AACATAGCAATCTTACTAGCTCT-GAAACAATTATGCAAAGCTGAA--ACTATGTCTAAATCATCCCA----GACTTTCT-ATGT-T-GACTTGGACAATAATTGAAAAATGG--TAAGCTCTGCTTGCATCATGCTAATTGGGGGAA-----TA---CAACTA-CAAT-GAGAAAC-AATTTGAATTCAAAAT--TTTC----------AA-TAA-AC-C---A--GCAGCAATG-TCCAAATATGCA-TGAATCAAATGTCCAACATAATGCGTAACAAAAATGACAATG--AAAA--AAAAAGG--TA-GGGTT----------------------------GG--G--GGT-TAT-----TA-TGTA-------TAGGAAGGCTATGGG--T-AACAGGCACATA--ATA-----C-ATATTTTTTTATTTat
gi|20 : AATTCAAAATGACTTCTT-TAATGAAAAATAACAA--------GCAACAATG-TCTAAATA---A-TG---CAA------AACA-AAAtg
gi|21 : AAATAAATA--------TGTGT---G--GGTCCTG-TTACACC-TCTTATC-CA-AAATAGGG-AG--G--TAGG-CAGG----GATTat
gi|22 : ATGGT-CAAG--TCAACCGGAAC--C--ATA-----TTATATTTTTTTACTTGGCCTAATatc
gi|3 : aAGGCCAAATAAAAAAT--A---TGTGT---G--GGTCTGG-TTACG-C-TCTTA----A-AAAT----TGG--A--TAGG-TAGG----GATTTCT------------TA------------------TAT-----TTTGGTCA--G-------A-------TGG-------------T---------GAT-TTATCAATAAAG-TTGACA-AT-G--A--TGTA-ATC-TTGTTTTCCAATTTTTCTTTA----------CATGTGCAAGTCATGTTG---T---A-TGA-TTCATGCAT-G-TTTCT-AAAA------CTAATTTATG-AA-ATT-GAATC-TACT-GCTTT-G-AACAAATATGC-AA-CTGAGT-GCTAT-CCT------TGTT-----GAATTTCTGATGTCT-GAGTAGAGGAA-AGCTAAACACT-G--CAGGCTCTGCATGCACCATG-TAAATTGGGGGA-----Tat
gi|3 : AC-CATGTAAATTGGGG--GATTTCTT-TAATCAAAA-CAACAA--------GCAACGATA-TCCAACGG---A-TG---CAA------AACA-AAACTG----AAAAATTCTGAAA--AAAA--AA----GTTTT-GGGTC--TAG--------------GG--------------------G-----TATTATCTATACTATAGGGACAGT-TGGG--T-AACCGGAAC--C--ttctttaatcaaaacaacaagcaacgatatccaacggatgcaaaacaaaactgaaaaattctgaaaaaaaaagttttgggtctaggggtattatctatactatagggacagttgggtaaccggaacc
gi|4 : aggccaaataaaaaatatgtgtgggtctggttacgctcttaaaaattggataggtagggatttcttatattttggtcagatggtgatttatcaataaagttgacaatgatgtaatcttgttttccaatttttctttacatgtgcaagtcatgttgtatgattcatgcatgtttctaaaactaatttatgaaattgaatctactgctttgaacaaatatgcaactgagtgctatccttgttgaatttctgatgtctgagtagaggaaagctaaacactgcaggctctgcatgcAACTTTTCTTTATATACATA---A---GCAAGTCA---TA---T---------T--GTGCAT-G-TTTCTGAAAA-------TCATTTATGGAA-ATA-CAATC-TA-T-GCTTT-G-AACAA-TACGC-AAGCTGAGTTGCTAT-TCTAAA--CTC-------GACTTTCTGATGTCT-GACTTGAAGGA-AGCTGGAAACT-G--AAGGCTTTGCATGCATCATG-TAATTTGGGGAA-----TA--CCAGCTAGC--T-GAGAAAT-AATGTGAATTCAAAATGATTTTTTATAATCAAAA-TAAC---T---A--TCAACAATG-TCCAATTA---A-TG---CAA------AACA-AAAATG----AAAAATTCC-AAA--AAAA--AAAGAAGTTTA-GGGTC--CCC--------------CG------------------TAG-----TATTACC-------TAGTGATGGT-CAGG--T-AACCGGAAC--C--ACG-----C-ATACTTTTTTATTTGGCCT
gi|5 : ACTTTTCTTCACATACATGT--AT-TATAAGTCA---TG---TTGTG-TGA-T--ATAAAT-G-TTTCTGAAAA------CTCATTCATG-AA-AAA-GAGTC-TACT-GCTTT-G-AACAA-TACGA-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATG--------------A-AGCTGGAAATT-G--CAGGCTCTGCATGTATTAT--------------------A--CCAGCTAGC--T-GAGAAAC-AAAGTGAGTTCAAAATGATTTCTT-TAATCAAAA-TAACAA-T---AAGGCAACAATG-TCCATTTA---AATG---CAA------AA-----ATCA----ACAAATTTTGAAA--AA-A--ACA---GTTTA-GGGTCGGCGGGTGGGGGGGGGGGGGG-G-----GG--G--GGTGTAGGTGTATATTATC-------TAGGGaacat
gi|6 : AGGCCAAATAAAAAA---A---TATGTAGCG--GTTC-GG-TTACG-CCTCTTATC-AA-AA-TAGGGTAA--GGCTAGGCTAAG----GTTTTTTTTAA-----TTTTA------------------TTTATTTATTTTTTTT--T---------------TGG-------------TCAAGATCATAATCTCATCAATAAAG-TTGACA-GT-G--A--TGCA-A---TTGTTTTCCAA-TTTTC-TTACATACAT----ATGT---AGTCA---TGT--T---GTTAA-T--ATGCAT-G-TTTATAAAA-------------TACA-AC-A-A-GAAT--TCCT-GCTTTAG-AGCAAATA---------------CTAT-TCTAAA--ATCC-ATTCTGGCTTTCTGA-GTCTAGACTT-AAAGA-AGCTGGAAACT-GTATAGGCTCTGCATGTATTATG-TA
gi|7 : AGGCCAAA-AAAAAATACA---TGTAT---G---TTCCGGGTTACG-C-TCTTATC-AA-AA-TAGGGTACATG--TAGG-TAGG----TAGTTTT---A-----TTTTA------------------ATT-----TTCATTTT----------A-------TGT-------------T-----------T-TGGTCAGTGGTA-TTGACA--T-G--A--TGCT-ATC-TTGTTTTCCAATTTTTCTCGACATAC-T-----TGTGCAAGCCA---TGTTTT---G-TAATT--ATGCAT-GTTTTCTG-AAT------CTCATTTA--------------C-TACT-GCATT-G-AGCAAATA-G------------------TCTAAA--ATCATT----GACTTTCTGATGTCT--ACGT-AAAGA-AGCTGAAAACT-G--CAGACTCTG
gi|8 : TTCCGG-TTACG-C-TCTTATT-AA-GAATAGGGTAG--G--TAGG-TAGGTAGGGATTTTTTTTA-----TTTTT------------------TAT-----TTTTTTTT--TGGGTCAGA-------TGG-------------T---------AAT-TCAACAATAAAT-TTGACA-AT-G--A--TGCA-ATC-TTGTTTTCAAACTTTTCTTTACACA------CACGTGTAAGTCATGTTG---T---G-TAA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG--------------------------------ATATGC-AAGCTGAAT-GCTAT-TCTAAA---------------------ATGTCT-GACTTG-GAGA-AGCTGGAAACT-G--CAGGCT
gi|9 : CGTG-TAATTTGGGGGGAGGGGTA--CCAGTTAGC--T-GAGA--T-TATGTGAATTCAAAAT---TTCTT--AATCAAAA-TAACAA--------GCAACAAAGCTCCAAGTA---A-TG---CAA------ATCA-AAAATG----AAAAA-----AAATTAGAGTGAGGGGGGTGTG-GGG-----AG--------------GG-G-----GGGTG--GGT---G-----TATTATT-------TAGGGGCGAT-CGGGTAT-AACCGGAAC--C--ACA-----C-ATAT
blockSeqs : T AATA AGC CT G C C A G A AT GC C TAGG AATTCT ATAATTAATCTTTTTTTT ATTTA GGTGTGGATGTGAGGATGGTT C A T T GT GT G T T ACATGTGT TC TGT TTT TGT T T TC G T AATTTAA AACATAGC T A A A A T A TT G TCA CATTCT A GGAC T G TA C AGGGG . AA G AA T AT A TTTAA C T TGC A AAT ATGTCC T GC TAAC ACA TT T TG AAAG A TCGGCGGGTGGGGGGGGGGGGGGGGGGGGTGTAGGTGTA TATACTA C A TA C CTT TATTTT
blockSeqs : T TACA T . . . . . . A . . . . TTAA . . TTGGTCAAGATCAT . C . . . . . . T GTAAGTC GT TGT TC . . . . . . A GAAATAC . . . . A C . T . A ATT . GAGG . . . . . . . . A T C . TAAG . G . . . . . CT . CTG . A . AGAA . TCCGGGGGGGGTAAATTAGGG . A . . . ATA TT
blockSeqs : T TA . . . . . . . T . . . . TTTA . . TAGGTCAGATGGT . . . . . . . . T ACATGT GC GT T . . . . . . A AAATAC . . . . T T . T . A CTA . GAAG . . . . . . . . C G T . CAA . A . . . . . AT . TTG . A . GGGG . AGGGGGGGTGGGTG . G . . . C C
blockSeqs : T A . . . . . . . A . . . . A . . TTGGTCACATGGT . . . . . . . . T ATGTC GC . . . . . . . . A ACATAC . . . . A T . T . C CCA . AAA . . . . . . . . A G A . CA . A . . . . . TC . AC . A . TG . CGGAGGGGGGGG . T . . . C C
blockSeqs : . A . . . . . . . A . . . . A . . TGGGTCAGATGGT . . . . . . . . C ACATA AT . . . . . . . . A AAATTG . . . . A C . T . A CTA . AAA . . . . . . . . A G T . TA . A . . . . . AT . CC . A . A . TTGGGGGTTAT . C . . . C C
blockSeqs : . . . . . . . . . A . . . . A . . GTCAGATAGT . . . . . . . . T ACAT GC . . . . . . . . T AAAAAG . . . . A C . T . A ATT . GGA . . . . . . . . T G T . C . C . . . . . T . . . . . . . TCCCCCGTAG . T . . . C C
blockSeqs : . . . . . . . A . . . . . . . GATGGT . . . . . . . . G ACT GT . . . . . . . . A ACAAG . . . . A T . . . A TT . . . . . . . . G T . . . T . . . . . . TCTAGGGG . C . . . .
blockSeqs : . . . . . . . . . . . . . ATGTT . . . . . . . . T AC C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : TAA**** TGGTCAGATGGT******************************** ACAT**** GAA* ** CA****** TCCGGGGGGGGTAG***********************************
originalCons : AGGCCAAATAAAAAA---A---TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTT--T-------A-------TGG-------------T---------AAT-TCATCAATAAAG-TTGACA-GT-G--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGT-CATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTCT-GACTTGAGGGA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAAA--AAAGAGGTTTA-GGGTC--CGG--------------GG-G-----GG--G--GGT-TAG-----TATTATC-------TAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
finalCons : AGGCCAAATAAAAAATAA----TGTGT---G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTTTT---A-----TTTTA------------------TTT-----TTTTTTTTTGGTCAGATGGT--------------------------------AAT-TCATCAATAAAG-TTGACA-GT-G--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACAT----ATGTGCAAGTCA---TG---T---G-TGA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCCTA----GACTTTCTGATGTCT-GACTTGAA-GA-AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAACA------GCAACAATG-TCCAANTA---A-TG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAAA--AAAGAGGTTTA-GGGTCCGGGGGGGGTAG-----------------------------------TATTATC-------TAGGGACGGT-CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTCTCAAATATTTGTGGAAAGACAACTCTGTCATTTGAACAATACAAAAGCAAGTCCAGTTGCTTT
Alignments
lowQualScore : 2222 222222222 2222222222 111111111 333333333333333333 11111111111111111111 222 1111111 1111111 111111111 1111111 111111 11111 33333333 111111 1111 111 2222 111111 555555555555555555 1111111 11111 1111111
lowQualScore : 7 5 7777 5 5 66 0 4 4 4 4 4 3 55 55 4 8888 4 333333333 8888888888 4 222222222 777 555555555555555555 8 4 4 1 8 666 55 55 4 4 5 99999999999999999999 999 2222222 8888 55 3 3 0 2222222 000000000 4 4 4 4 3 1 4 44 4 0 666 7777777 0 4 000000 66 4 66 4 0 22222 77 77 5 88 5 66 4 55555555 4 1 88888 777 111111 4 77 2222 111 77 77 2222 0 5 777777 2 999999999999999999 8888888 5 3 66 66 5 33333 4444444
lowQualScore : . . .... . . .. . . . . . . . .. .. . .... . ......... .......... . ......... ... .................. . . . . . ... .. .. . . . .................... ... ....... .... .. . . . ....... ......... . . . . . . . .. . . ... ....... . . ...... .. . .. . . ..... .. .. . .. . .. . ........ . . ..... ... ...... . .. .... ... .. .. .... . . ...... . .................. ....... . . .. .. . ..... .......
lowQualScore : 3 7 0000 0 0 99 9 4 0 0 0 0 4 55 55 0 5555 4 111111111 3333333333 4 888888888 888 111111111111111111 0 0 0 6 0 222 55 55 0 0 6 55555555555555555555 111 4444444 0000 00 3 3 5 4444444 999999999 0 0 0 0 4 4 0 77 0 8 222 3333333 7 0 111111 11 4 11 4 5 55555 99 99 7 44 0 44 0 00000000 0 0 44444 000 555555 4 33 1111 333 99 99 6666 1 0 111111 5 333333333333333333 6666666 7 4 99 99 0 11111 6666666
consensus : AGGCCAAATAAA-AAATA-ATGT-GT-G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTT-TT---A-----TTTTA----------T-TT------T--TTTT---TTT--T---------G-----GTCA-GATGG-TAAT-TCATCAATAAAG-TTGACA-G-TG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACAT----ATGT-G----CAAGTCA-G-TG---T---GT-GA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCC----TAGACTTTCTGATGTCT-GACTTGA-AG-A--AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANT-A---ATG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAA--AAAAGAGGTTTA-GGGTC--CGGGGGGGGT----------A-------GTATTATC-------TA-GGGACGGT--CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
Reference ( family-3855 ) : AGGCCAAATAAA-AAATA-ATGT-GT-G--GTTCCGG-TTACG-C-TCTTATC-AA-AAATAGGGTAG--G--TAGG-TAGG----GATTT-TT---A-----TTTTA----------T-TT------T--TTTT---TTT--T---------G-----GTCA-GATGG-TAAT-TCATCAATAAAG-TTGACA-G-TG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACAT----ATGT-G----CAAGTCA---TG---T---GT-GA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACT-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCC----TAGACTTTCTGATGTCT-GACTTGA-AG-A--AGCTGGAAACT-G--CAGGCTCTGCATGCATCATG-TAATTTGGGGGA-----TA--CCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATCAAAA-TAACAA-C---A--GCAACAATG-TCCAANT-A---ATG---CAA------AACA-AAANCG----AAAAATTCCGAAA--AAA--AAAAGAGGTTTA-GGGTC--CGGGGGGGGT----------A-------GTATTATC-------TA-GGGACGGT--CGGG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTTGGCCTTATTA
gi|1 : AGGCCAAATAAA-AAA---ATGT-GT-G--GTTCTGG-TTATG-C-TCTTATC-AA-AAATAGGATGG--G--TAGG-TACG----TATTT-TT---A-----TTTTA----------T-TT------T--TTTT---ATT--T----------------------TGG-TAAT-TCATCAATAAAG-TTGATA-G-TG--G--TGCA-ATC-TTGTTTTCCAACTTTTCTTTACATACATGTACATGT-G----TAAGTCA---TG---T---GT-GA-T--ATACAT-G-TTTCTGAAAA------CTCATTTATG-AA-ATA-CAATC-TACC-GCTTT-G-AACAAATACGC-AAGCTGAGT-GCTAT-TCTAAA--ATCC----TAGACTTTCTGATGTTT-AACTTGAGGG-A--ATCTGAAAACT-G--CAGGCTCTGCATGCATCATG-TAAATTAGGGGA-----TATTCCAGCTAGC--T-GAGAAAC-AATGTGAATTCAAAATGATTTCTT-TAATTAAAA-TAACAATT---A--GCAACAATG-TCCAATT-A---ATG---CAA------AACA-AAATTG----AAAAATTCCGAAA--AAA--AAAAAAGGTTTA-AGGTT--TGGGGTGTGTGTGTGTGTTAA-------TTATTATC-------TA-GGGAAGGT--CGTG--T-AACCGGAAC--C--ACA-----C-ATATTTTTTTATTAGGCCTTATTA
gi|10 : CTGCATGCATCATT-TAATCTAGGGGA-----GA--CCAGCTAGC--TGGGGAAAC--ATGTGAATTCAAAATTATTTCTT-CAATCACAA-TGACAA-C------GTAATGATG-TCCAATT-A---ATA---C---------ACA-GAAT-G----AAAAATTAC--AA--AAT--AAATG----TTA-AAG----CGGAGGGGGG----------G-------GTATTTTC-------TA-GGGACGGT--TGGG--T-AACCGAAAC------CA-----C-ATTTTTTTTAATTTGGTCT
gi|11 : tgaaaaAGGCCAAA--AA-AAA-A-ATGT-GTTG--GTTCTGG-TTACA-C-TCTTATCAAA-AAATAGGGTAG--G--CGAA-TGTA----GAATT-TT---A-----TTTTA----------T-AT------A--TTAT---TTTGGT---------GTGGATGTGAGGATGGTTAAT-TCATCAATAATGATTGACA-G-TT--G--TGCA-ATC-TTGTTTCC--ACTTT--CTTACATACAT----GTGT-ATTATCATGTTA---TATC-T---GT-G--T--ATACAT-G-Taa
gi|12 : tCA-GATAG-TAAT-TCATCAATAGAG-TTGACC-G-TG--A--TGCA-ATCTTTGTTTTCCAACTTTCCTTTACA------------T-G----TAAGTCATGTTG---T---GT-AA-T--ATGCAT-G-TTTC--------------------TG-AA-ATA-CAATC-TCCT-GCTTT-G-AGCAAATATAC-AAGCCGAGT-GCTAT-TCTAAA--ATCA----TTGAC--TCTGATGTCT-GACTT----G-A--AGCTGGAAATT-G--Ca
gi|13 : GT-GA-G--GTTCCGT-TTACA-C-TCTTAT--AA-AAATAGGGTAG--G--TAGG-TAGG----GATTT-TC---------TTTTC----------T-TC------T--TTTT---TTT------------------GTCA-GATAG-TAAT-TCACCAATAAAG-TTACCA-G-TAGTA--TGCAGATC-TTGTTTTCC-ACTTTTCGT-------AT----ATGT-G----TAAGTCAGT-TG---T---GT-GA-A--ATACAT-G-TTTCTGA
gi|14 : GCATGCATCATG-TAATTTGAGGGA-----TA--CCAGCTAGC--T-GAGAAACAAATGCGAATTCAAAATTATTTCTT-TAATCACAA-TAACAA-TTTAA--GCAACAATG-TCCTAGT------CG---CAA------A
gi|15 : ctggacaatctacagaaataaacatttatgagcG-T-TCTTAAC-AA-AATTAGGGTAG--G--TAAG-TAGG----GATTT-TC---AATTCTTTTTAATAATTAATCT-TT------T--TTTT---TTT--TTTTTTTTTAG-----GTCA-GATGG-TAAT----TCAATAAAG-TTGACG-GTTG--A--TGCA-ATC-TTGTTTTCCAACTTTTCTTcttagtaatgaa
gi|16 : TACAT-G-TGTCTGAAAAATTTAACTCATTTATA-AC-ATA-CAATC-TACT-TCTTT-G-GACAGATACAC-AAGCTGAAT-GTTAT-TTT-AT--ATCC----TAGACGTTCTGATGTCT-GAa
gi|17 : agGTTTAAGGGTC--CGGGGGGGGT----------AAATTAGGGCATAATC-------TA-GGGAAGGT--TGGG--T-AACCGGAAC--CTTACATATTTT-ATATTTTTTTATTTGGCCTT
gi|19 : AATTCAAAATGATTTTTT-AAATTAAAA--AATAA-CA--A--GCAACAATG-TCTAAAT-A---ATG---CAA------AACA-AAA
gi|2 : GGCCAAATAAA-AAAAATATGT-TT-GCTGTTCCGG-TTATG-C-TCTTATC-AAGAAATAGGAT---------GG-TAGG----GATTT-TT---A-----TTTTAT---------T-TT------T--TTTT---TTT--T---------G-----GTCA-CATGG-TAAT-T-ATCAATAAAGCTTGACATG-TG--AGTTGTA-GTC-TTGTTTTCCAATTTTTCT---CG---------ATGT------CAAGTCAAG-TT---T---GT-GGTT--ATA-ATGG-TTTCTTAAAA------CTCATTTATG-AACATAGCAATCTTACTAGCTCT-GAAACAATTATGCAAAGCTGAA--ACTATGTCTAAATCATCC----CAGACTTTCT-ATGT-T-GACTTGG-AC-AATAATTGAAAAATGG--TAAGCTCTGCTTGCATCATGCTAATTGGGGGAA-----TA---CAACTA-CAAT-GAGAAAC-AATTTGAATTCAAAAT--TTTC----------AA-TAA-AC-C---A--GCAGCAATG-TCCAAAT-ATGCATGAATCAAATGTCCAACATAATGCGTAACAAAAATGACAATG--AAA--AAAAAAGG--TA-GGGTT------GGGGGT-------------------TATTATG-------TATAGGAAGGCTATGGG--T-AACAGGCACATA--ATA-----C-ATATTTTTTTATTTat
gi|20 : AATTCAAAATGACTTCTT-TAATGAAAAATAACAA--------GCAACAATG-TCTAAAT-A---ATG---CAA------AACA-AAAtg
gi|21 : AAATAAATA--TGT-GT-G--GGTCCTG-TTACACC-TCTTATC-CA-AAATAGGG-AG--G--TAGG-CAGG----GATTat
gi|22 : ATGGT--CAAG--TCAACCGGAAC--C--ATA-----TTATATTTTTTTACTTGGCCTAATatc
gi|3 : aAGGCCAAATAAA-AAATA--TGT-GT-G--GGTCTGG-TTACG-C-TCTTA----A-AAAT----TGG--A--TAGG-TAGG----GATTTCTT---A-----T---A----------T-TT------T------------------------G-----GTCA-GATGG-TGAT-TTATCAATAAAG-TTGACA-A-TG--A--TGTA-ATC-TTGTTTTCCAATTTTTCTTTAC----------ATGT-G----CAAGTCATGTTG---T---AT-GA-TTCATGCAT-G-TTTCT-AAAA------CTAATTTATG-AA-ATT-GAATC-TACT-GCTTT-G-AACAAATATGC-AA-CTGAGT-GCTAT-CCT------TGT----T-GAATTTCTGATGTCT-GAGTAGA-GGAA--AGCTAAACACT-G--CAGGCTCTGCATGCACCATG-TAAATTGGGGGA-----Tat
gi|3 : AC-CATGTAAATTGGGG--GATTTCTT-TAATCAAAA-CAACAA--------GCAACGATA-TCCAACG-G---ATG---CAA------AACA-AAACTG----AAAAATTCTGAAA--AAA--AAA----GTTTT-GGGTC--TAGGG-----------------------GTATTATCTATACTATA-GGGACAGT--TGGG--T-AACCGGAAC--C--ttctttaatcaaaacaacaagcaacgatatccaacggatgcaaaacaaaactgaaaaattctgaaaaaaaaagttttgggtctaggggtattatctatactatagggacagttgggtaaccggaacc
gi|4 : aggccaaataaaaaatatgtgtgggtctggttacgctcttaaaaattggataggtagggatttcttatattttggtcagatggtgatttatcaataaagttgacaatgatgtaatcttgttttccaatttttctttacatgtgcaagtcatgttgtatgattcatgcatgtttctaaaactaatttatgaaattgaatctactgctttgaacaaatatgcaactgagtgctatccttgttgaatttctgatgtctgagtagaggaaagctaaacactgcaggctctgcatgcAACTTTTCTTTATATACAT----AAG-------CAAGTCA---TA---T---------T--GTGCAT-G-TTTCTGAAAA-------TCATTTATGGAA-ATA-CAATC-TA-T-GCTTT-G-AACAA-TACGC-AAGCTGAGTTGCTAT-TCTAAA--CTC-------GACTTTCTGATGTCT-GACTTGA-AGGA--AGCTGGAAACT-G--AAGGCTTTGCATGCATCATG-TAATTTGGGGAA-----TA--CCAGCTAGC--T-GAGAAAT-AATGTGAATTCAAAATGATTTTTTATAATCAAAA-TAAC---T---A--TCAACAATG-TCCAATT-A---ATG---CAA------AACA-AAAATG----AAAAATTCC-AAA--AAA--AAAAGAAGTTTA-GGGTC--C----CCCGT----------A-------GTATTACC-------TA-GTGATGGT--CAGG--T-AACCGGAAC--C--ACG-----C-ATACTTTTTTATTTGGCCT
gi|5 : ACTTTTCTTCACATACAT----GTATTA----TAAGTCA---TG---TTGTGT-GA-T--ATAAAT-G-TTTCTGAAAA------CTCATTCATG-AA-AAA-GAGTC-TACT-GCTTT-G-AACAA-TACGA-AAGCTGAGT-GCTAT-TCTAAA--ATCC----TAGACTTTCTGATG---------------A--AGCTGGAAATT-G--CAGGCTCTGCATGTATTAT--------------------A--CCAGCTAGC--T-GAGAAAC-AAAGTGAGTTCAAAATGATTTCTT-TAATCAAAA-TAACAA-T---AAGGCAACAATG-TCCATTTAA---ATG---CA----------A-AAATCA----ACAAATTTTGAAA--AAA--ACA----GTTTA-GGGTCGGCGGGTGGGGaacat
gi|6 : AGGCCAAATAAA-AAAAT-ATGTAGC-G--GTTC-GG-TTACG-CCTCTTATC-AA-AA-TAGGGTAA--GGCTAGGCTAAG----GTTTT-TTTTAA-----TTTTA----------T-TTATTTATT--TTTT---TTT--T---------G-----GTCAAGATCA-TAATCTCATCAATAAAG-TTGACA-G-TG--A--TGCA-AT---TGTTTTCCAA-TTTTCTT-ACATACAT----ATGT--------AGTCA---TG---TT--GTTAA-T--ATGCAT-G-TTTATAAAA-------------TACA-AC-A-A-GAAT--TCCT-GCTTTAG-AGCAAATAC---------------TAT-TCTAAA--ATCCATTCTGG-CTTTCTGA-GTCTAGACTTAA-AG-A--AGCTGGAAACT-GTATAGGCTCTGCATGTATTATG-TAggggggggggggggggtgtaggtgtatattatctaggg
gi|7 : AGGCCAAA-AAA-AAATACATGT-AT-G---TTCCGGGTTACG-C-TCTTATC-AA-AA-TAGGGTACATG--TAGG-TAGG----TAGTT-TT---A-----TTTTAA---------T-TT------TCATTTTATGTTT--T---------G-----GTCA-G-TGG-TA----------------TTGACA---TG--A--TGCT-ATC-TTGTTTTCCAATTTTTCTCGACATAC-T-----TGT-G----CAAGCCA---TGTTTT---GT-AATT--ATGCAT-GTTTTCTG-AAT------CTCATTTA--------------C-TACT-GCATT-G-AGCAAATA-G------------------TCTAAA--ATCA----TTGACTTTCTGATGTCT--ACGTAA-AG-A--AGCTGAAAACT-G--CAGACTCTG
gi|8 : TTCCGG-TTACG-C-TCTTATT-AA-GAATAGGGTAG--G--TAGG-TAGGTAGGGATTT-TTTTTA-----TTTTT----------TATT------T--TTTT---TTT--G---------G-----GTCA-GATGG-TAAT-TCAACAATAAAT-TTGACA-A-TG--A--TGCA-ATC-TTGTTTTCAAACTTTTCTTTAC--ACAC----ACGT-G----TAAGTCATGTTG---T---GT-AA-T--ATGCAT-G-TTTCTGAAAA------CTCATTTATG--------------------------------ATATGC-AAGCTGAAT-GCTAT-TCTAAA---------------------ATGTCT-GACTTGG-AG-A--AGCTGGAAACT-G--CAGGCT
gi|9 : CGTG-TAATTTGGGGGGAGGGGTA--CCAGTTAGC--T-GAGA--T-TATGTGAATTCAAAAT---TTCTT--AATCAAAA-TAACAA--------GCAACAAAGCTCCAAGT-A---ATG---CAA------ATCA-AAAATG----AAAAA-----AAATTAGAGTGAGGGGGGTGTG-GGG-----AGGGGGGGT----------GGGT----GTATTATT-------TA-GGGGCGAT--CGGGTAT-AACCGGAAC--C--ACA-----C-ATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTCTCAAATATTTGTGGAAAGACAACTCTGTCATTTGAACAATACAAAAGCAAGTCCAGTTGCTTT