lowQualScore : 111111111111111111111111 11111111111111111111111111
lowQualScore : 33 2 222 2 1 222222 44 2 1 22 1 11 111 222 33333333 333 222222 33333 33333 6666666666666 1 1 1 1 222 1 2222 33333333 1 000000000000000000000000 1 3333333 111 1 222 111 111 1 111 3333333333 444444444444444 1111 111 11 3333333333 111 111111 111 2222222 1111 11 22222222222222222222222222 11111 1111 111 1 1 1111 55555555555555555555555555 1 222 88888888888888888888888888888888888888888888888888888888888888888888888 111 1111111 111111 111111 111 1111111111 22222222222 111 44444444 11111111111
lowQualScore : 55 4 0 555 0 2 5 888888 77 66 0 5 00 3 9999 77 88 1 8 777 333 7 88888888 000 7 777777 55555 77 0 11111 1 3333333333333 3 7 3 6 3 3 000 11 3 0 6666 99999999 0 3 999999999999999999999999 3 0 2 2222222 3 3 777 6 0 111 3 777 555 0 111 3 1111111111 111111111111111 2 2222 3 333 99 8 8 8 0 55 3333333333 111 6 1 999999 444 6 6 99 7777777 6 1 8 2222 00 55555555555555555555555555 77 0 5 77 22222 77 5 5 8888 55 000 0 777 4 0 66 5 4 3 5 4 5 2 5 0 5 5 4 4 4 3 7 4444 55 1 3 66 3 55 55 3 6 11111111111111111111111111 4 4 4 4 4 4 8 55 666 4 1 4 1 1 111 4 4 1 55555555555555555555555555555555555555555555555555555555555555555555555 111 4 99 2 8 1 666 3 1111111 0 7 111111 88888 3 666666 44 333 999 3 6666 3 6666 777 1 44 3333333333 44 3 666666 22222222222 66666 888888 111 99 4 2 77777777 4 3 3 3 6 3 999999 3 3 0 555 55555555555 99 3
lowQualScore : .. . . ... . . . ...... .. .. . . .. . .... .. .. . . ... ... . ........ ... . ...... ..... .. . ..... . ............. . . . . . . ... .. . . .... ........ . . ........................ . . . ....... . . ... . . ... . ... ... . ... . .......... ............... . .... . ... .. . . . . .. .......... ... . . ...... ... . . .. ....... . . . .... .. .......................... .. . . .. ..... .. . . .... .. ... . ... . . .. . . . . . . . . . . . . . . . . .... .. . . .. . .. .. . . .......................... . . . . . . . .. ... . . . . . ... . . . ....................................................................... ... . .. . . . ... . ....... . . ...... ..... . ...... .. ... ... . .... . .... ... . .. .......... .. . ...... ........... ..... ...... ... .. . . ........ . . . . . . ...... . . . ... ........... .. .
lowQualScore : 00 0 0 555 0 5 5 000000 55 55 0 0 77 3 0000 77 33 0 3 777 333 3 33333333 333 3 777777 00000 77 7 77777 0 3333333333333 3 0 3 7 3 3 000 33 3 7 0000 33333333 7 3 222222222222222222222222 2 0 5 5555555 5 2 000 0 0 000 5 888 888 0 000 2 0000000000 555555555555555 5 0000 5 666 00 0 0 0 8 88 2222222222 777 7 7 222222 555 7 7 22 2222222 7 4 7 1111 00 11111111111111111111111111 44 4 7 99 00000 99 7 7 6666 22 111 4 111 1 0 99 0 4 6 0 5 0 5 0 0 0 0 4 4 4 0 3 6666 00 6 6 22 6 00 00 0 3 55555555555555555555555555 0 0 0 0 0 0 0 55 222 0 2 4 9 4 777 4 4 9 22222222222222222222222222222222222222222222222222222222222222222222222 000 0 55 5 0 6 444 6 8888888 4 3 333333 88888 3 888888 22 222 888 1 5555 1 5555 555 1 22 5555555555 22 1 888888 44444444444 77777 222222 000 55 0 5 66666666 1 6 6 6 7 3 666666 3 3 2 888 88888888888 22 6
consensus : NNNTCCACATTGATTNCCGGGACGCCCTGGCATACCCTCNTGGTATCCACNNCGCACGAAAACTGCGCTNNAACTTTAATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCNACGG--AAGGATTAGTG-A-ATGGA---CCATTCAAAGAAG--A----TATCAG--ACCTCCCAAAAAAA-TCGC-AATA---G-CCGCGCGCCGATAC---AACCACAGAATAT------A-----CAGGAAT-ACAAGAC-ACAGCTCAACAGG-ACACGGC-AGAACC-CAATCACCA-CATTGA-TG-CAGATTC-A-T--TATCCGAA-ATTAA----------A----C--------AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CAT-TACCACNGG--NCATGA-TT-AAA-T-AACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--ATCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATT-AAAACCCCAAA--TACACG-GNAAA-C-TACAC--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAAA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CACG-TCTC-GT-CTGAACAGATT-CGCCG---TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AACAGAAG--TACNAC---AAT-TAC-GTC-CACACC--AA-ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATC--CTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTAT---T-AG-TGCATTA-NAA---ATAC--AC--A--C-----GAA---C--TC-----A---------------C--AAN------TT---A-T--ANCG-CGCATAAA---A-TTA-------TGGAAC-TA----TGGAC-CG--TTA-A----N-T--AAATT-G-TA--ATA-T----A-TAT----TT--ATGTCCA--T----------T--T-A------CAT-----------TA-----T-C-A--CTTT---GTTTA--T-AGCA------AACGCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( gi|2 ) : TAATCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGTAC-CGAA--CTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGATCG--AAGAAATAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGTTACCTCCCAAAAAAAATCGT-AATA---G-CCGCACGCCAACAC---AGCTACAGAATAC------A-----CAGGAAT-ACAATAC-ACAGCTGAACAGG-ACACGGC-AGAACCGCAGCCACCA-CACTGATTG-CAGATAC-A-T--TATCCGAA-ATTAA----------A----C--------AATACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CAT-T-CCACAGG--ACATGA-TT-AAA-T-AACAACTAAA-T-GCTAA-GGAAATTTA-TACAC--ATCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CAAGAC---AC-ACGAGGAACGAC------CGAATTCTTGA-T-G--AAT--TT---A-ATAAAACCAGGAACAA----ATG-AAAACCCCAA---TACATG-GTAAA-C-TACAC--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACAAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CACA-TCTC-GT-CTGAACAGATT-CGCCA---TATC--TCCAA-GTTTTACTCAT-GAACTTTC--AACAGAAG--TGCAACT-TAATTTAC-GTCATATACCGTAACATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATC--CTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTAT---T-AG-TGCATTA-AAA---ATAC--AC--A--C-----AAA---C--TC-----A---------------C--AAA------TT---A-T--ACCG-CGCATAAA---A-TTA-------TGGAAC-TA----TTGAC-TG--TTA-A----T-T--AAATT-G-TG--ATA-T----A-TAT----TT--ATGTCCA--T----------T--T-A------CAT-----------TA-----T-C-A--CTTT---GTTTA--T-AGCAT----TAATGCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|3 : TCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATCAC-CGAAA-CTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC--AAGCTT-CAAGAACTCACAG--AAGGATTAGTGAA-ATGGA---CCATTCAAAGAAGATA----TATCAGTAACCTCCC-AAAAAAATCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAA-----CAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGA---CAATCACCT-TATTGA-TG-GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAGA----T--------AATAC-AC-GATCTT-----------AAATAGTCACAGAA-TAT-TACCACTGGTCTCAT---TT-AAT-T-AAC-ACTAAA-CAGGAAA-CAAAATTGA-GTCACA-ATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TC-ATCAATGAACAGT--------TAAGAC---AC-ACG-GGAACGAC------CGAATGTCTGA-T-G--AA----T---A-AGTAAACCAGGGACAA----ATT-AAAACCCCAA----ATACG-GGA--------------AAA-TCTA-CT--A--AAGAGT--GT-ACCA-GCAC-C-GAAAA-AACATG-T-GATGCTTTCTTTTCT---GGACGAGTGA-TA--G-T-TTT-AGCGGGG-ATCT-ATC-CC-T-CACA-TCTC-GT-CTGAACA-ATT-CGCCCCGTTATC--TTCAA-G---------T-GAATTTTCCAAACAGAAG--TACTACCATAA---GC-GTT-CACACC-CAATATCGGTC-AACATT-GGAAACCG-TCA-C-AACC--CTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTATAA-T-AG-TGCATTT-AA------AT--AA--A--C-----TGA---C--TCTTTTTAGC-------------C--CAG------TT---T-TTAAACGCCTCGTAAA---A-TTA-------TGAAACGTA----TGGAT-CA--TTAGA----TAT--AACTTGG-TAC-ATATT----A-TAT----TT--CTGACCATTT----------T--T-A------CAT-----------T
gi|1 : accCCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTT-ATGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTG-ATATGGA---CCATTCAA-GAAG--A----CATCA--TAACTCCCAAAAAAA-TTGT-AAGA---G-CCGCACGC-GACAC---A-CTACAGAATAC------A-----CAGGAAT-ATAATAC-ACAGCTGAACAGG-ACACGGC-AGAACCGCAGCCACCACCACTGA-TG-CAGATAC-ACT--TATCCGAACATTAA----------A----C--------AATACAGC-GATCTCCA-------GAAGATA-TTACAGAATCAT-T-CCACCAG--ACATGA-TTAAAA-T-AACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAATCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAG-CGAGAC---ACAACGAGGAACG-C------CGAATTC-TGA-T-AATAAT--TTTTAA-ATAAACACAGG-ACAA----ATGAAAAACCCAAA---TACAT--GTAAA-CTTACAC--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTT-GATACTTTCTTTTCTC--GGACGAGTGGATA--GTT-TAT-AGC-GGG-ATCT-ATACCC-T-CACG-TCTC-GTGCGAAACAGATT-CTCCG---TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AACAGAAG--TGCAA----ACTTTAT-GTCGCAC-TTGAAACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATC--CTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTAT---T-AG-TGC-----------ATAC--ACT-A--T-----GAA---C--TC-----A---------------C--AAA------TTG--A-T--ACCG-CGCAT-AA---A-TTA-------TGGAACTTA----TTGAC-TG--TTA-AT---T-T--AAGTT-GATA--ATA-T----A-TAT----TT--ATGTCCA--T----------T--TAA------CAT-----------TA-----T-gatagacatgatatatattat
gi|4 : ACCC-AAATCTTTCAAGAACCTACGG--AAGGATGAGTG-A-ATGGGGACCCATTTAAAGAAA--AATTATATCAGA-ACCTCCCAAAAAAA--CAC-AATA---TTCCGTACTCCAATAC---AACCACAGAATAT------AGCCTACAGGAAT-ACAAGAC-ACAGCTCAACAGGGACATGGC-AGAACC--AATCACCA-CATTGATGGGCAGATTT-A-A--TATCCAAA-TTTAA----------AATTCCGAAATGAAAACACAAC-GATCTTCA-------GAAG----TCACAGAA-TAT-TACCACAGG--TCATCA-TT-TAA-TTAACAGCTAAA-T-G------GAAAT-------------------GAAAT------------C--TACAA--T-CCGC-TC-ATCAATGAACAGT----TAG---AGAC---AC-ACGAGGAACGAT-------GAATTTCTGA-T-G--AAT--T----A-ATAAAACCAGGGACAA----ATT-AAACCCCAAA---TA--------------ACAC--GGAAA-ATTA-CT--A--GAGAGT--GT-ACCA-GCA--C-GGAAA--ACATG-T-GATACTTTCTTTTCTT--GGACGAGTGG-TA--G-T-T-T-AGCGGGGGATCT-ATA-CCCT-CACG-TCTC-GT-CTGAACAGATT-CGCCG---TATC--TTCAA-GTTTTAATTG--GAATTTTC--AAC----G--TAC-----TA--------------ACCATA----C-GTC-ACAATT-GAAAA-CG-TCA-CAAATC--CTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTATTAAT-AG-TTCATT--AAA---ATAC--GA--A--CTCATTAAA---A--TC-----ATTATATTTTTTAGCCC--ATT------TT---A-T--AACG-CTCAT--A---A-TTA-------TGAAAC-TA----TGGAC-CA--TCA-G----A-T--AACTT-G-TA--ATA-T----A-TAT----TT--CTGTCCA--T----------T--T-A------CAT-----------GA-----T-agataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|5 : --------AATAAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCT-CCACAGG--ACATGAATT-AAAAT-AACAACTAAAAC-GCTAA-GGAAATTCAGTACAC--AATCGCCGGAAATGCAGCCGTATT-CAGTTCAAA-T-CCGC-TC-ATGCATGA-CA-TA-TTTAG--GAGACGAAAC-ACGAGGAACGGC------CGAATT-TTGA-TTG--AAT--TT---ACATAAA-CAAGGGACAA-----TG-AAAACCCCGAAAGTACATG-GTAAA-C-TACAA--ACGTA-TTCA-CTTAA--GGCAGT--GT-ACCA-GCA--CCGAAGA-GACACG-T-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--G-T-TAT-AGCGGGG-AT-T-ATC-AC-T-CACG-TCTC-GT-CTGAACAGATT-CGCCG---TATC--TCC-A-GTTTAACTCGT-GAACTTTC--AACAGAAG--TGCAAC-----TTTAC-G-------------------TC-ACAA-T-GAAAA-CA-TCACC-AAT---CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCAT---T-AG-T-C-----------ATAC--AC--AG-G-----AAA---C--T------A---------------C--AAA------TT---A-TA-ACCG-TGCATAAA---ATTTA-------TGAACT-TA----TTGAC-TG--TTA-A----T-T--TAATT-G-T---ATA-T----A-TAT----GT--ATGTC----T----------T--T-A------C-T-----------TA-----T-ggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|7 : aTT-CAGTACAAGATACCGCATC-TTCAATGAAC--TA-TTTAGGCGAGA----AC--CGAGGAACGACACCAGCCGAATCCTTGAAT-G--AATAATT---A-ATAACACCAAGGGAAA----ATG-AAAACCCCAT---CACCTGTGTAAA-C-TACACCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCA-GCA--C-GAAAAGGACACG-GAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACG-TCTATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGT-CTGAA-AG-TT-CGC-----GATC--TCCAAGGTTTTACCAAT-GAACTTTC---ACAGAAAGCTGCAAC-----CTTACAGT--TCCAACG-AAAATC-GTCAACAATTAGAAAA-AT-TCA-CAAATC----CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTAT---T-AGTTGCATTA-TAA---A-----AC--A--C-----GAA---C--TC-----A---------------C---AA------TT---A-T--AGCGCCGC-CAAATATA-TT--------TGGAAT-GA----TGGACTTG--TTA-AACTTT-T--AAATT-G-T---AT--T----A-T-T----TT--ATagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : tatTTAG---AGAC---AC-ACGAGGAACGAC------CGAATGTCTGA-T-G--AAT-------A-ATAAAACCAGGGACAA----ATT-AAAACCCCAAA--TACACG-GAAAATC-TAC-----TAAA----------A-----AGT--GT-ACCA-GCA--CCGAAAA-AACACG-T-GATACTTTCTTTACTC--GGACGAGTGA-TA--G-T-TTT-AGAGGGG-ATCT-ATC-CC-T-CACA-TCTC-GT-CTAAACAAATT-TGCCG---TATC--TTCAA-G---------T-GAACTTTC--AACAGAAG-----AAC--TACCATAA-GTC-T-CACC-CAA-ATC-GTA-ACAATA-GAAAC-CG-TCA-C-AATCCACTCAT--AATA-GAACATTCCAACATCC-CACGGACTACTCTATTAAT-AG-TGCATTT-AAA---AT--------A--C-----GAA---C--TC-----ATTTTTTAGCC-----C--GTT------TT---A-T--AACG-CTCATAAA---A-TTA-------TGAAAC-TA----TGGAT-CA--TTA-G----A-T--AACTT-G-TA--ATA-T----A-TAT----TT--CTGACCA--T----------T--T-A------CAT-----------tcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|12 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagaAAACCAGGAATAATTAAATT-AAAACCCCAAA--TATACG-GAGAA-C-TACAT--GTAAA-TTTA-CA--A--GAGAGT--GTCATCA-GTG--CTGAAGA-GAAACA-T-GATAATTTCTTTTCTT--GGACAAGTGG-TA--G-T-gttagacatgatataatttattgtaaaccaaactctgtatactatcatattttatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|8 : -GAAAA-GACACG----ATACTT-CTTTTCTCTTAGACGAATGG-TA--G-A-TAT-AGCGGGG-ATCT-ATA-CC-TTCACA-TCTC-GT-CTGAACAAATT-CACCG---TATC--TTCAA-GTTTTACTCAT-GGATTTTC--AACAGAAG--TACAACC---AT--AC-GTCGCAC-CC--AA-ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATC--CTCACATAATA-GAATATTCCAACATCC-C-----TTAT-CTAT---TTAG-TGCATTA-TAA---ATAT--ATGAA--C-----AAA---TATTT-----G---------------T--AAGCCCGTTTT---A-T--ACTG-CGCATAAA---A-TTAATTATTATGTAAC-TAATAATGGAC-TTATTTA-A----A-T--GAATT-G-TA--ATA-T----A-TATATATTT--CTGTCCA--T----------T--T-A------CGT-----------GA-----TAG-A--CATT---A--TA--T-A--AT----TAATctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|12 : -TAA-AGCAGGG-AC-----A-C--T-CACA-TCTC-GT-CTGAACAAATTTCACCG---TATC--TTCAA-GTTTTACTTGT-GAACTTTC--AACAGAAG--tataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|11 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaaA-TCTT-GT-CTGAACAAATTTCACCT---TATC--ATTAA-GTTTTACTTGT-GAACATTC--AACAGAAG--TACTAC---AAT--AC-GTC-T-CACC-TAA-ATT-GTC-ACAACT-GAAAA-CA-TTA-C-AATC--CTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAAT---T-AG-TGCATTATAAA---AT--------A--C-----AAA---T--TC-----A---------------T---AT------TT---A-T--ACTG-TGTATAAA---A-TTA-------TAGAAC-TA----AGGGC-TA--ATA-A----A-T--TAATT-G-TAATATA-T----A-TAT----TT--CTGTCCA--T----------T--T-A------CGT-----------GA-----T-aagtactacaatatgtc
gi|9 : ACAAATT-CGCCT---TATC--TTCAA-GTTTTACTCAT-GAACTTTC--AACAGAAG--TACTACT---AT--AC-GTCACAC-CC--AA-ATC-ATC-ACAACT-GAAAA-CA-TCA-C-AATC--CTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCAT---T-AG-TGCATTA-TAATTTATACCGAC--ATTC-----AAACATC--CC-----A---------------CAGAAA------TTTCCATT--AGTG-ATTATAAA---A-TT--------TATAAC-CA------GAC---------A----T-TCAAAATT---CC--ACA-T----G-AA---------AT-TCCA--T----------TAGT-G------CAT-----------TA-----T-A-A--T-------TTTA--T-ATCAC------ATGCCACGAATTA-A-GATA-TA-TTT-Aaaacaatg
gi|16 : ATT-CGCCA---TATC--TTCAA-GTTTTACTTGT-GAACTTTA--AACAAAAG--TTCTACC---AT--GC-GTCACAC-CC--AA-ATT-GTC-ACAATT-GAAAA-CG-TCG-C-AATC--CTCACATAATA-GAACA
gi|10 : a---ATTC--AC--A--C-----GAA---C--TC-----A---------------C--ATA------TC---A-T--ACCT-CACATAAA---A-TTA-------TGGAAC-TA----TTGAC-TG--TCA-A----T-T--AAATT-G-TA--A------------------T--ATGTCCA--T----------T--T-A------CAT-----------TA-----T-
gi|21 : TAAA---A-TTA-------TGGAAC-TA----TGGAC-CA--TTA-A----A-T--AAATT-G-TA--ATagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|6 : actA----TTTAT-TG--TAA-A----C-C--AAACT-C-TGT-ATA-CTATCA-TAT----TTT-ATGCCCA--TCTGCATGTTGT--T-AAGTTGCCAT-----------TA-----T-T-T--CTTT---GTTTA--T-AGCA-------ACGCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCC
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatata--AAACT-A-TG--ATA-G----AATAT----TTTAATG-CTA--T----------C--T-G------CATGTGTTGTTAAGTACGCATT-C-A--CTTT----TTAA--T-AGCAC--------GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtt
gi|15 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattattttattcatatttcgtataaataaattttagaac-T----A-TAT----TG--ATGCCCA--T----------C--T-G------CATGTGTAAGTCGCCA-----T-T-A--TTTTTCTGTTTA--T-AGC-------AACGCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACC
gi|5 : tgtaaaatcaaaactctgtatactatTGTTAA--T----------C--C-G------CAT-----------TA-----T-C-A--CTTTT--GTTTA--T-AGCA-------ACGCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCt
gi|1 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgt------CAT-----------TA-----T-CCA--CTTT---GTTTAA-TGAGCA-------ACGCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCC
gi|8 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc------CAT-----------T------T-C-A--CTTT---GTTTA--T-AGC------CAACGCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--
gi|10 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccatttacgtgatagacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgc------CAT-----------TA-----T-C-A--CTAT---GTTAAAAT-AGCA-------ACGCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCC
gi|13 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgc------CAT-----------TA-----T-T-TTTCTTT---GTTTA--T-A-CATGTAGCAACGCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCC
gi|17 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcAACGCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCCt
gi|19 : agcGCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|20 : c-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|14 : tattatcttcaaaT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT
Alignments
lowQualScore : 22 2 2 2 2 22 2 1 1 1 11 111 111 2222 11 2222 11 1 22222 2222 555555 1 1 1 1 333 1 1 11 222222 1 8888888888888888888 2222222 1 11 1 111 11111 11 11 11 111 111111 2222222 1111 222222222222222222222222 11 55555555555555555555555555 111 11 11111111111 666666666666666666666666666666666666666666 111 1111111 11111 1111111111 11111111111 111 2222 11111111111
lowQualScore : 22 1 0 3 3 7 3 1 7 3333 3 22 22 3 6 0 7 0 1 0 0 44 111 777 3 1111 33 8888 33 0 33333 2 2 4444 333333 0 2 0 2 0 0 111 0 0 33 4 222222 0 8888888888888888888 3 8 6666666 1 0 8 1 8 5 1 1 11 888 6 8 3 222 66 8 44 999 55555 5 8 1 99 55 6 6 6 2 44 77 000 5 0 666666 44 5 5 77 7777777 5 0 0 0000 3 66 5 66 5 1 5 5 666666666666666666666666 1 66 5 5 66 8 4 8 66 8 66 4 66 4 4 1 4 4 8 4 4 4 3 1 6 44 3 44 3 1 3 44 555 1 88888888888888888888888888 7 55 3 3 3 3 3 3 7 3 4 0 0 999 4 4 0 11 666 66666666666 666666 777777777777777777777777777777777777777777 000 3 7 1 7 0 555 3 0000000 6 7777 0 77777 44444 3 44 3 77 2 6666 3 33 2222222222 33 2 666666 77777777777 3 55 000 88 3 555 3333 555 0 3 3 3 5 3 888888 3 3 555 44444444444 88 3
lowQualScore : .. . . . . . . . . .... . .. .. . . . . . . . . .. ... ... . .... .. .... .. . ..... . . .... ...... . . . . . . ... . . .. . ...... . ................... . . ....... . . . . . . . . .. ... . . . ... .. . .. ... ..... . . . .. .. . . . . .. .. ... . . ...... .. . . .. ....... . . . .... . .. . .. . . . . ........................ . .. . . .. . . . .. . .. . .. . . . . . . . . . . . . .. . .. . . . .. ... . .......................... . .. . . . . . . . . . . . ... . . . .. ... ........... ...... .......................................... ... . . . . . ... . ....... . .... . ..... ..... . .. . .. . .... . .. .......... .. . ...... ........... . .. ... .. . ... .... ... . . . . . . ...... . . ... ........... .. .
lowQualScore : 00 0 7 3 3 3 3 0 3 3333 7 77 00 7 7 0 0 0 0 0 2 00 000 555 2 2222 88 5555 22 0 88888 0 5 5555 888888 0 5 0 5 0 0 222 0 0 88 0 222222 0 0000000000000000000 8 0 0000000 0 8 0 4 0 8 0 0 00 888 0 0 8 444 00 0 00 666 88888 0 0 0 88 88 7 7 7 5 00 55 000 7 1 444444 00 7 7 99 7777777 7 1 2 6666 0 99 0 99 0 0 0 0 444444444444444444444444 0 99 0 0 99 9 4 9 11 9 11 0 77 4 4 1 4 4 9 4 4 0 6 8 7 66 3 66 3 6 3 66 888 0 66666666666666666666666666 3 00 6 6 6 6 6 6 3 6 0 7 4 555 0 0 8 00 444 44444444444 555555 999999999999999999999999999999999999999999 000 6 3 0 3 5 888 3 8888888 7 1111 4 33333 77777 1 22 1 33 9 1111 1 99 5555555555 99 9 444444 99999999999 6 00 000 66 3 888 8888 444 2 1 1 1 7 1 888888 1 1 444 66666666666 55 3
consensus : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGTAC-CGAAA-CTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTC------C--------AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGAC--ATGA-TTAAAAT-AACAACTAAA-C-GCTAAGG-AAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATTC-AGTACAA--T-CCGC-TCA-TCAATGAACAGTA-TTTAG-CGAGAC---ACA-CGAGGAACGAC------CGAATTTCTGA-T-GA--AT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-CT-ACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCAG-CA--C-GAAGA-GACACGT-GATACTTTCTTTTCTC--GGACGAGTGG-TA--GT-T-AT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GTCTGAA-CAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGTG-AACTTTC--AAC---AGAAGTACTAC--CA--TT-A-C-GTC-CACA-CC--AA-A--TC-GTC-ACAATT-GAAAA-CGT-CA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTAT---T-AG-TGCATTATAA---ATAC--AC--A--CGAA---C--TC-----A------------------------C--AAN------TT---A-T-ACCG-CGCATAAA---A-TTA-------TGGAAC-TA----TGGAC-CG--TTAA----NTA-AATT--G-TA--ATA-TATAT----TTATGTCCA--T----------T--T-A------CAT-----------TATC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( family-3843 ) : NNNTCCACATTGATTNCCGGGACGCCCTGGCATACCCTCNTGGTATCCACNNCGCACGAAAACTGCGCTNNAACTTTAATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCNA-CGGAAGGAT-TAGTGA-A-TGGA---CCATTCAAAGAAGA----TAT--CAG--A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCGCGCCGATACA---ACCACAGAATATA------CAGGAAT-ACAAGACA-CAGCTCAACAGG-ACACGGCA-GAACC-CAATCACCAC-ATTGAT-G--CAGATTC-A-T--TATCCGAA-ATTAAA----------C--------AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACNGGNC--ATGA-TTAAA-T-AACAACTAAA-C-GCTAAGG-AAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATTC-AGTACAA--T-CCGC-TCA-TCAATGAACAGTA-TTTAG-CGAGAC---ACA-CGAGGAACGAC------CGAATTTCTGA-T-GA--AT--TT---A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GNAAA-CT-ACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCAG-CA--C-GAAAA-GACACGT-GATACTTTCTTTTCTC--GGACGAGTGG-TA--GT-T-AT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GTCTGAA-CAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGTG-AACTTTC--AAC---AGAAGTACNAC--AA--TT-A-C-GTC-CACA-CC--AA-A--TC-GTC-ACAATT-GAAAA-CGT-CA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTAT---T-AG-TGCATTANAA---ATAC--AC--A--CGAA---C--TC-----A------------------------C--AAN------TT---A-T-ANCG-CGCATAAA---A-TTA-------TGGAAC-TA----TGGAC-CG--TTAA----NTA-AATT--G-TA--ATA-TATAT----TTATGTCCA--T----------T--T-A------CAT-----------TATC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|1 : CCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTTA-TGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTGATA-TGGA---CCATTCAA-GAAGA----CAT--CAT--A-ACTCCCAAAAAAA-TTGTAA-GA---G-CCGCACGC-GACACA----CTACAGAATACA------CAGGAAT-ATAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCACCACTGAT-G--CAGATAC-ACT--TATCCGAACATTAAA----------C--------AATACAGC-GATCTCCA-------GAAGATA-TTACAGAATCATT-CCACCAGAC--ATGA-TTAAAAT-AACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAA-TCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAG-CGAGAC---ACAACGAGGAACG-C------CGAATT-CTGA-T-AATAAT--TTTTAA-ATAAACACAGG-ACAA----ATGAAAAACCCAAA--TA-CAT--G--TAAA-CTTACA--C--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTTGATACTTTCTTTTCTC--GGACGAGTGGATA--GT-TTAT-AGCGGG--ATCT-ATA-CCCT-CAC-GTCTC-GTGCGAAACAGATT-CT--CCG-TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AAC---AGAAGTGCAAA--CT--TT-A-T-GTCGCACT-TG--AA-ACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATCCTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTAT---T-AG-TGC----------ATAC--ACT-A--TGAA---C--TC-----A------------------------C--AAA------TTG--A-T-ACCG-CGCAT-AA---A-TTA-------TGGAACTTA----TTGAC-TG--TTAAT---TTA-AGTT--GATA--ATA-TATAT----TTATGTCCA--T----------T--TAA------CAT-----------TAT
gi|1 : ------CAT-----------TATCCA--CTTT---GTTTAA-TGA---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCCagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|10 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc---ATTC--AC--A--CGAA---C--TC-----A------------------------C--ATA------TC---A-T-ACCT-CACATAAA---A-TTA-------TGGAAC-TA----TTGAC-TG--TCAA----TTA-AATT--G-TA--A-------------TATGTCCA--T----------T--T-A------CAT-----------TAT
gi|10 : ------CAT-----------TATC-A--CTAT---GTTAAAAT-A---GCA--A-C---GCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCCagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|11 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgcTCTT-GTCTGAA-CAAATTTCA--CCT-TATC--ATTAA-GTTTTACTTGTG-AACATTC--AAC---AGAAGTACTAC--AA--T--A-C-GTC-T-CA-CCT-AA-A--TT-GTC-ACAACT-GAAAA-CAT-TA-C-AATCCTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAAT---T-AG-TGCATTATAA---A-----AT--A--CAAA---T--TC-----A------------------------T---AT------TT---A-T-ACTG-TGTATAAA---A-TTA-------TAGAAC-TA----AGGGC-TA--ATAA----ATT-AATT--G-TAATATA-TATAT----TTCTGTCCA--T----------T--T-A------CGT-----------GAT
gi|12 : aAAACCAGGAATAATTAAATTAAAACCCCAAA--TA-TAC--G-GAGAA-CT-ACA--T--GTAAA-TTTA-CA--A--GAGAGT--GTCATCAG-TG--CTGAAGA-GAAACAT-GATAATTTCTTTTCTT--GGACAAGTGG-TA--GT-aaacaatg
gi|12 : -T-AA-AGCAGGG-AC-----A-C--T-CAC-ATCTC-GTCTGAA-CAAATTTCA--CCG-TATC--TTCAA-GTTTTACTTGTG-AACTTTC--AACAGAAGAAGTACTAC--AA---T-A-T-GTC-ctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|13 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaaTA-ACTT--G-TA--ATA-TATAT----TC-TGACCA--T----------T--T-A------CA
gi|13 : a------CAT-----------TATT-TTTCTTT---GTTTA--T-ACATGTAGCAAC---GCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCCatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgccattatttttctttgtttatacatgtagcaacgctccaattctatgtatatttatagaaatcgctcccggcccgaaattcttccttccagtagtgaaattatcct
gi|14 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCt
gi|15 : agagaacaagtaatataaggtaaacatttttcattctgcaatctgccactgttttaagtcgccattcaactcgtctttgttatatagcaacgagcatccgtgcttcctcttttgttgacgatagtcttgtattaaagc-TATAT----TGATGCCCA--T----------C--T-G------CATGTGTAAGTCGCCATT-A--TTTTTCTGTTTA--T-A---GCA--A-C---GCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACCa
gi|16 : tgtaaaatcaaaactctgtatactatATT-CG--CCA-TATC--TTCAA-GTTTTACTTGTG-AACTTTA--AAC---AAAAGTTCTAC--CA--T--G-C-GTCACAC--CC--AA-A--TT-GTC-ACAATT-GAAAA-CGT-CG-C-AATCCTCACATAATA-GAACAt
gi|17 : a-A---GCA--A-C---GCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCC
gi|19 : C---GCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|2 : TCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGTAC-CGAA--CTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGA-TCGAAGAAA-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGTTA-CCTCCCAAAAAAAATCGTAA-TA---G-CCGCACGCCAACACA---GCTACAGAATACA------CAGGAAT-ACAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGATTG--CAGATAC-A-T--TATCCGAA-ATTAAA----------C--------AATACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CATT-CCACAGGAC--ATGA-TTAAA-T-AACAACTAAA-T-GCTAAGG-AAATTTA-TACAC--A-TCCGCCCGAAATGCA-CCGTATTC-AGTACAA--T-CCGC-TCA-TCAATGAACAGTA-TTTAG-CAAGAC---ACA-CGAGGAACGAC------CGAATTCTTGA-T-GA--AT--TT---A-ATAAAACCAGGAACAA----ATGAAAACCCCAA---TA-CAT--G-GTAAA-CT-ACA--C--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCAG-CA--C-GAAGA-GACACGT-GATACTTTCTTTTCTC--GGACAAGTGG-TA--GT-T-AT-AGCGGGG-ATCT-ATA-CC-T-CAC-ATCTC-GTCTGAA-CAGATT-CG--CCA-TATC--TCCAA-GTTTTACTCATG-AACTTTC--AAC---AGAAGTGCAACTTAA--TTTA-C-GTCATATA-CCGTAACA--TC-GTC-ACAATT-GAAAA-CGT-CA-C-AATCCTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTAT---T-AG-TGCATTAAAA---ATAC--AC--A--CAAA---C--TC-----A------------------------C--AAA------TT---A-T-ACCG-CGCATAAA---A-TTA-------TGGAAC-TA----TTGAC-TG--TTAA----TTA-AATT--G-TG--ATA-TATAT----TTATGTCCA--T----------T--T-A------CAT-----------TATC-A--CTTT---GTTTA--T-A---GCATTAAT---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|20 : taa-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|21 : tattatcttcaaaTAAA---A-TTA-------TGGAAC-TA----TGGAC-CA--TTAA----ATA-AATT--G-TA--ATa
gi|3 : actTCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATCAC-CGAAA-CTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC-AA-GCTT-CAAGAACTCA-CAGAAGGAT-TAGTGA-AATGGA---CCATTCAAAGAAGA----TATATCAGTAA-CCTCCCAAAAAAA-TCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAACAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGAC---AATCACCTT-ATTGAT-G--GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAGAT--------AATACA-C-GATCTT-----------AAATAGTCACAGAA-TATTACCACTGGTCTCAT---TTAAT-T-AACA-CTAAA-CAGGAAACA-AAATTGA-GTCAC--AATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TCA-TCAATGAACAGT----TA----AGAC---ACA-CG-GGAACGAC------CGAATGTCTGA-T-GA--AT-------A-AGTAAACCAGGGACAA----ATTAAAACCCCAAA--TA-C----G-GGAAA----------------A-TCTA-CT--A--AAGAGT--GT-ACCAG-CAC-C-GAAAA-AACATGT-GATGCTTTCTTTTCT---GGACGAGTGA-TA--GT-T-TT-AGCGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GTCTGAA-CA-ATT-CGCCCCGTTATC--TTCAA----------GTG-AATTTTCCAAAC---AGAAGTACTAC--CA--TA-AGC-GTT-CACACCC--AATA--TCGGTC-AACATT-GGAAACCGT-CA-C-AACCCTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTATAA-T-AG-TGCATT-TAA---ATAA--AC-----TG-A---C--TCTTTTTAGCC---------------------C--AGT------TT---T-TAAACGCCTCGTAAA---A-TTA-------TGAAACGTA----TGGAT-CA--TTAG----ATATAACTTGG-TAC-ATATTATAT----TTCTGACCATTT----------T--T-A------CAT-----------T
gi|4 : accACCC-AAATCTTTCAAGAACCTA-CGGAAGGAT-GAGTGA-A-TGGGGACCCATTTAAAGAAAAATTATAT--CAG--AACCTCCCAAAAAAA--CACAA-TA---TTCCGTACTCCAATACA---ACCACAGAATATAGCCTA-CAGGAAT-ACAAGACA-CAGCTCAACAGGGACATGGCA-GAACC--AATCACCAC-ATTGAT-GGGCAGATTT-A-A--TATCCAAA-TTTAAAATTC------CGAAATGAAAACACAAC-GATCTTCA-------GAAG----TCACAGAA-TATTACCACAGGTC--ATCA-TTTAA-TTAACAGCTAAA-T-G-----G-AAAT--------------------GAAAT-----------C---TACAA--T-CCGC-TCA-TCAATGAACAGT----TAG---AGAC---ACA-CGAGGAACGAT-------GAATTTCTGA-T-GA--AT--T----A-ATAAAACCAGGGACAA----ATTAAA-CCCCAAA--TAACAC--G-GAAAA-TT-AC------------------T--A--GAGAGT--GT-ACCAG-CA--C-GGAAA--ACATGT-GATACTTTCTTTTCTT--GGACGAGTGG-TA--GT-T--T-AGCGGGGGATCT-ATA-CCCT-CAC-GTCTC-GTCTGAA-CAGATT-CG--CCG-TATC--TTCAA-GTTTTAATTG-G-AATTTTC--AAC-------GTACTA---------------------A-CC--AT-A---C-GTC-ACAATT-GAAAA-CGT-CA-CAAATCCTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTATTAAT-AG-TTCATTA-AA---AT--------A--CGAA---C--TC-----ATTAAAATCATTATATTTTTTAGCCC--ATT------TT---A-T-AACG-CTCAT--A---A-TTA-------TGAAAC-TA----TGGAC-CA--TCAG----ATA-ACTT--G-TA--ATA-TATAT----TTCTGTCCA--T----------T--T-A------CAT-----------GATgatagacatgatatatattat
gi|5 : --------AATAAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCTCCACAGGAC--ATGAATTAAAAT-AACAACTAAAAC-GCTAAGG-AAATTCAGTACAC--A-ATCGCCGGAAATGCAGCCGTATTC-AGTTCAAA-T-CCGC-TCA-TGCATGA-CA-TA-TTTAG--GAGACGAAACA-CGAGGAACGGC------CGAATTT-TGA-TTGA--AT--TT---ACATAAA-CAAGGGACAA-----TGAAAACCCCGAAAGTA-CAT--G-GTAAA-CT-ACAAAC--GTA---TTCA-CTTAA--GGCAGT--GT-ACCAG-CA--CCGAAGA-GACACGT-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--GT-T-AT-AGCGGGG-AT-T-ATC-AC-T-CAC-GTCTC-GTCTGAA-CAGATT-CG--CCG-TATC--TCC-A-GTTTAACTCGTG-AACTTTC--AAC---AGAAGTGCAAC---T--TT-A-----------------------C-GTC-ACAA-T-GAAAA-CAT-CACC-AAT-CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCAT---T-AG-T-C----------ATAC--AC--A--GGAA---A--CT-----A------------------------C--AAA------TT---A-TAACCG-TGCATAAA---ATTTA-------TGAACT-TA----TTGAC-TG--TTAA----TTT-AATT--G-T---ATA-TATAT----GTATGTC----T----------T--T-A------C-T-----------TATggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|5 : aTGTTAA--T----------C--C-G------CAT-----------TATC-A--CTTTT--GTTTA--T-A---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgtGAGAC---ACA-CGAGGAACGAC------CGAATGTCTGA-T-GA--AT-------A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GAAAATCT-AC-------TAAA---------------AAGT--GT-ACCAG-CAC-C-GAAAA-AACACGT-GATACTTTCTTTACTC--GGACGAGTGA-TA--GT-T-TT-AGAGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GTCTAAA-CAAATT-TG--CCG-TATC--TTCAA----------GTG-AACTTTC--AAC---AGAAGAACTAC--CA---T-A-A-GTCTCAC--CC--AA-A--TC-GTA-ACAATA-GAAAC-CGT-CA-C-AATCCACTCATAATA-GAACATTCCAACATCC-CACGGACTACTCTATTAAT-AG-TGCATTTAAA---AT--------A--CGAA---C--TC-----ATTTTTTAGCC--------------C--GTT------TT---A-T-AACG-CTCATAAA---A-TTA-------TGAAAC-TA----TGGAT-CA--TTAG----ATA-ACTT--G-TA--ATA-TATAT----TTCTGACCA--T----------T--T-A------CATGTTAGA-----CATG-A--TATA---ATTTA--T-T---GTA--AACCAAACTCTGTATACTA-T-CA-TA-TTT-
gi|6 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattaA-TAT-T----TTATGCCCA--TCTGCATGTTGT--T-AAGTTGCCAT-----------TATT-T--CTTT---GTTTA--T-A---GCA--A-C---GCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCCtatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatataatttattgtaaaccaaactctgtatactatcTTC-AGTACAAGATACCGCATCT-TCAATGAAC--TA-TTTAGGCGAGA----AC--CGAGGAACGACACCAGCCGAATCCTTGAAT-GA--ATAATT---A-ATAACACCAAGGGAAA----ATGAAAACCCC--A--T--CACCTGTGTAAA-CT-ACA--CCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCAG-CA--C-GAAAAGGACACGGAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACGTCT-ATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGTCTGAA--AG-TT-CG---CG--ATC--TCCAAGGTTTTACCAATG-AACTTTC---AC---AGAAA-GCTGC--AACCTT-A-CAGTT-C-CA-ACGAAA-A--TC-GTCAACAATTAGAAAA-ATT-CA-CAAATC--CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTAT---T-AGTTGCATTATAA---A-----AC--A--CGAA---C--TC-----A------------------------C--AA-------TT---A-T-AGCGCCGC-CAAATATA-TT--------TGGAAT-GA----TGGACTTG--TTAAACTTTTA-AATT--G-TA--TTA-T---T----TTATtt
gi|7 : tatTC-A--CTTT----TTAA--T-A---GCA----C---GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|8 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattattttattcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcat-GAAAA-GACACG---ATACTT-CTTTTCTCTTAGACGAATGG-TA--GA-T-AT-AGCGGGG-ATCT-ATA-CC-TTCAC-ATCTC-GTCTGAA-CAAATT-CA--CCG-TATC--TTCAA-GTTTTACTCATG-GATTTTC--AAC---AGAAGTACAAC--CA--T--A-C-GTCGCAC--CC--AA-A--TC-GTC-ACAATT-GAAAA-CGT-CA-C-AATCCTCACATAATA-GAATATTCCAACATCC-C-----TTAT-CTAT---TTAG-TGCATTATAA---ATAT--ATGAA--CAAA---TATTT-----G------------------------T--AAGCCCGTTTT---A-T-ACTG-CGCATAAA---A-TTAATTATTATGTAAC-TAATAATGGAC-TTATTTAA----ATG-AATT--G-TA--ATA-TATATATATTTCTGTCCA--T----------T--T-A------CGT-----------GAT
gi|8 : ------CAT-----------T-TC-A--CTTT---GTTTA--T-A---GCC--AAC---GCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--agacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|9 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccatttacgtgatagacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgcA-CAAATT-CG--CCT-TATC--TTCAA-GTTTTACTCATG-AACTTTC--AAC---AGAAGTACTAC--TA--T--A-C-GTCACAC--CC--AA-A--TC-ATC-ACAACT-GAAAA-CAT-CA-C-AATCCTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCAT---T-AG-TGCATTATAATTTATACCGAC--ATTCAAACATC--CC-----A------------------------CAGAAA------TTTCCATT-AGTG-ATTATAAA---A-TT--------TATAAC-CA------GA--CA--TTCA------A-AATT----CC--ACA-TGAA-------AT-TCCA--T----------TAGT-G------CAT-----------TATA-A--T-------TTTA--T-A---TCA--CAT---GCCACGAATTA-A-GATA-TA-TTT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT
Alignments
lowQualScore : 22 1 1 1 11 1 11 1 1 11 111 111 2222222 2 11 1 22222 111 4444444 1 1 1 1 1 1 11 222222 1 6666666666666 2222222 1 1 111 11 11 1111 11 111 111111 2222222 1111 2222222 11 5555555555555555555555555555 111 11111 6666666666666666666666666666666666666666666 1111111 11111 1111 1111111111 11111111111 111 2222 11111111111
lowQualScore : 00 0 3 3 7 3 7 3 88 7 3 6 33 0 2 0 0 11 111 777 3 6666666 2 0 33 0 33333 2 777 7 3333333 0 1 0 1 0 0 2 8 0 0 33 1 222222 0 6666666666666 0 8 6666666 1 0 8 1 8 5 1 1 0 8 1 1 0 222 66 8 44 999 99 1 5 8 1 888 55 6 6 6 1111 77 000 5 0 666666 1 5 5 77 0000000 5 0 0000 1 66 88 8888 1 555 4444444 0 666666 77777 1 66 5 5 66 8 4 888 66 8 66 4 4 2 4 2 4 1 4 8 4 4 4 4 4 1 6 44 3 44 3 1 3 44 555 44 1 2222222222222222222222222222 3 3 3 3 3 3 7 3 4 0 5 4 999 4 0 88 666 66666 99999 55 666 9999999999999999999999999999999999999999999 3 3 7777 3 3 55 6666666 3 888888 0 77777 44444 3 44 3 3333 2 3 33 2222222222 33 2 666666 77777777777 3 55 000 88 3 555 3333 555 0 3 3 3 5 3 888888 3 3 555 44444444444 88 3
lowQualScore : .. . . . . . . . .. . . . .. . . . . .. ... ... . ....... . . .. . ..... . ... . ....... . . . . . . . . . . .. . ...... . ............. . . ....... . . . . . . . . . . . . . ... .. . .. ... .. . . . . ... .. . . . .... .. ... . . ...... . . . .. ....... . . .... . .. .. .... . ... ....... . ...... ..... . .. . . .. . . ... .. . .. . . . . . . . . . . . . . . . . .. . .. . . . .. ... .. . ............................ . . . . . . . . . . . . ... . . .. ... ..... ..... .. ... ........................................... . . .... . . .. ....... . ...... . ..... ..... . .. . .... . . .. .......... .. . ...... ........... . .. ... .. . ... .... ... . . . . . . ...... . . ... ........... .. .
lowQualScore : 00 7 3 3 3 3 3 7 33 3 3 7 22 0 5 0 2 00 000 555 2 0000000 5 0 22 0 88888 5 555 0 5555555 0 0 0 0 0 0 5 8 0 0 88 0 222222 0 0000000000000 8 0 0000000 0 8 0 4 0 8 0 4 8 0 4 2 8 444 00 0 00 666 00 0 0 0 0 222 88 7 7 7 5555 55 000 7 1 444444 7 7 7 99 7777777 7 1 6666 0 99 22 1111 0 111 8888888 1 222222 88888 0 99 0 0 99 9 4 000 11 9 11 4 0 2 4 9 4 1 4 9 4 4 4 0 0 8 7 66 3 66 3 6 3 66 888 66 8 0000000000000000000000000000 6 6 6 6 6 6 3 6 0 7 3 0 555 0 8 99 444 55555 11111 00 444 3333333333333333333333333333333333333333333 6 6 7777 6 6 00 7777777 3 000000 4 33333 77777 1 22 1 8888 9 1 99 5555555555 99 9 444444 99999999999 6 00 000 66 3 888 8888 444 2 1 1 1 7 1 888888 1 1 444 66666666666 55 3
consensus : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGT-ACCTCCCAAAAAAA-TCGC-AATA---G-CCGCACGCCGACAC---AACCACAGAATACA-CCT-ACAGGAAT-ACAANAC-ACAGCTNAACAGG-ACACGGC-AGAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC--A-----AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--ATCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTT-AT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA----NTA-AATT--G-TA----ATA-TATATTTATGTCCA--T----------T--T-A------CAT-----------TATC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( family-3843 ) : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGT-ACCTCCCAAAAAAA-TCGC-AATA---G-CCGCACGCCGACAC---AACCACAGAATACA-CCT-ACAGGAAT-ACAANAC-ACAGCTNAACAGG-ACACGGC-AGAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC--------AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAAATAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--ATCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------NTT-AT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA----NTA-AATT--G-TA----ATA-TATATTTATGTCCA--T----------T--T-A------CAT-----------TATC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|1 : CCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTT-ATGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTG-ATATGGA---CCATTCAA-GAAG--A----CATCA-T-AACTCCCAAAAAAA-TTGT-AAGA---G-CCGCACGC-GACAC---A-CTACAGAATACA-C-----AGGAAT-ATAATAC-ACAGCTGAACAGG-ACACGGC-AGAACCGCAGCCACCACCACTGAT-G--CAGATAC-ACT--TATCCGAACATTAAA----C--------AATACAGC-GATCTCCA-------GAAGATA-TTACAGAATCATT-CCACCAGACATGA-TTAAAATAACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAATCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAG-CGAGAC---ACAACGAGGAACG-C------CGAA-TTCTGA-T-AATAAT--TTTTAA-ATAAACACA-GGACAA----ATGAAAAACCCAAA--TA-CAT----GTAAA-CTTACA--C--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTT-GATACTTTCTTTTCTC--GGACGAGTGGATA--GTT-TAT-AGC-GGG-ATCT-ATACCC-T-CAC-GTCTC-GTGCGAAACAGATT-CT--CCG-TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AAC---AGAAG--TGCAAAC--TTT-A-T-GTCGCACT-TG--AAACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATCCTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTA-T---TAG-TGC----------ATAC--ACT-A--TGA--A---CTC-----A------------------------C---AA------ATTGAT-A----CC-G-CG--CAT-AA-------A-TTATGGAACTT----ATTGAC-T--GTTAAT---TTA-AGTT--GATA----ATA-TATATTTATGTCCA--T----------T--TAA------CAT-----------TAT
gi|1 : ------CAT-----------TATCCA--CTTT---GTTTAA-TGA---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCCagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|10 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc---ATTC--AC--A--CGA--A---CTC-----A------------------------C---AT------ATC-AT-A----CC-T-CA--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTCAA----TTA-AATT--G-TA----A---------TATGTCCA--T----------T--T-A------CAT-----------TAT
gi|10 : ------CAT-----------TATC-A--CTAT---GTTAAAAT-A---GCA--A-C---GCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCCagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|11 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgcTCTT-GT-CTGAACAAATTTCA--CCT-TATC--ATTAA-GTTTTACTTGT-GAACATTC--AAC---AGAAG--TACTACA--AT--A-C-GTC-T-CA-CCT-AA--ATT-GTC-ACAACT-GAAAA-CA-TTA-C-AATCCTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAA-T---TAG-TGCATTATAA---A-----AT--A--CAA--A---TTC-----A------------------------T----A------TTT-AT-A----CT-G-TG--TATAAA-------A-TTATAGAAC-T----AAGGGC-T--AATAA----ATT-AATT--G-TAAT--ATA-TATATTTCTGTCCA--T----------T--T-A------CGT-----------GAT
gi|12 : aAAACCAGGAATAATTAAATTAAAACCCCAAA--TA-TAC--G-GAGAA-C-TACA--T--GTAAA-TTTA-CA--A--GAGAGT--GTCATCA-GTG--CTGAAGA-GAAACA-T-GATAATTTCTTTTCTT--GGACAAGTGG-TA--G-T-aaacaatg
gi|12 : -TAA-AGCAGGG-AC-----A-C--T-CAC-ATCTC-GT-CTGAACAAATTTCA--CCG-TATC--TTCAA-GTTTTACTTGT-GAACTTTC--AACAGAAGAAG--TACTACA--A-T-A-T-GTC-ctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|13 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaaTA-ACTT--G-TA----ATA-TATATTC-TGACCA--T----------T--T-A------CA
gi|13 : a------CAT-----------TATT-TTTCTTT---GTTTA--T-ACATGTAGCAAC---GCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCCatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgccattatttttctttgtttatacatgtagcaacgctccaattctatgtatatttatagaaatcgctcccggcccgaaattcttccttccagtagtgaaattatcct
gi|14 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCt
gi|15 : agagaacaagtaatataaggtaaacatttttcattctgcaatctgccactgttttaagtcgccattcaactcgtctttgttatatagcaacgagcatccgtgcttcctcttttgttgacgatagtcttgtattaaagc-TATATTGATGCCCA--T----------C--T-G------CATGTGTAAGTCGCCATT-A--TTTTTCTGTTTA--T-A---GCA--A-C---GCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACCa
gi|16 : tgtaaaatcaaaactctgtatactatATT-CG--CCA-TATC--TTCAA-GTTTTACTTGT-GAACTTTA--AAC---AAAAG--TTCTACC--AT--G-C-GTCACAC--CC--AA--ATT-GTC-ACAATT-GAAAA-CG-TCG-C-AATCCTCACATAATA-GAACAt
gi|17 : a-A---GCA--A-C---GCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCC
gi|19 : C---GCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|2 : TCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAA-CTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGA-TCGAAGAAA-TAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGTTACCTCCCAAAAAAAATCGT-AATA---G-CCGCACGCCAACAC---AGCTACAGAATACA-C-----AGGAAT-ACAATAC-ACAGCTGAACAGG-ACACGGC-AGAACCGCAGCCACCAC-ACTGATTG--CAGATAC-A-T--TATCCGAA-ATTAAA----C--------AATACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CATT-CCACAGGACATGA-TTAAA-TAACAACTAAA-T-GCTAA-GGAAATTTA-TACAC--ATCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CAAGAC---AC-ACGAGGAACGAC------CGAATTCTTGA-T-G--AAT--TT---A-ATAAAACCAGGAACAA----ATGAAAACCCCAA---TA-CAT--G-GTAAA-C-TACA--C--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACAAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-ATCTC-GT-CTGAACAGATT-CG--CCA-TATC--TCCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TGCAACTTAATTTA-C-GTCATATA-CCGTAAC-ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTA-T---TAG-TGCATTAAAA---ATAC--AC--A--CAA--A---CTC-----A------------------------C---AA------ATT-AT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTTAA----TTA-AATT--G-TG----ATA-TATATTTATGTCCA--T----------T--T-A------CAT-----------TATC-A--CTTT---GTTTA--T-A---GCATTAAT---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|20 : taa-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|21 : tattatcttcaaaTAAA-------A-TTATGGAAC-T----ATGGAC-C--ATTAA----ATA-AATT--G-TA----ATa
gi|3 : actTCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATC--ACCGAAACTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC--AAGCTT-CAAGAACTCA-CAGAAGGAT-TAGTGAA-ATGGA---CCATTCAAAGAAGATA----TATCAGTAACCTCCCAAAAAAA-TCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAACAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGA---CAATCACCTT-ATTGAT-G--GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAGAT--AATAC-AC-GATCTT-----------AAATAGTCACAGAA-TATTACCACTGGTC-TCA-TTTAATTAAC-ACTAAA-CAGGAAA-CAAAATTGA-GTCACA-ATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TC-ATCAATGAACAG----TTA----AGAC---AC-ACG-GGAACGAC------CGAATGTCTGA-T-G--AA----T---A-AGTAAACCAGGGACAA----ATTAAAACCCCAAA--T---AC--G-GGA----------------AAA-TCTA-CT--A--AAGAGT--GT-ACCA-GCAC-C-GAAAA-AACATG-T-GATGCTTTCTTTTCT---GGACGAGTGA-TA--G-T-TTT-AGCGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTGAACA-ATT-CGCCCCGTTATC--TTCAA----------GT-GAATTTTCCAAAC---AGAAG--TACTACC--ATA-AGC-GTT-CACACCC--AAT-ATCGGTC-AACATT-GGAAACCG-TCA-C-AACCCTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTA-TAA-TAG-TGCATT-TAA---ATAA--AC-----TG---A---CTCTTTTTAGCC---------------------C---AG------TTT-TT-AAACGCC-T-CG----TAAA-------A-TTATGAAACGT----ATGGAT-C--ATTAG----ATATAACTTGG-TAC---ATATTATATTTCTGACCATTT----------T--T-A------CAT-----------T
gi|4 : accACCC-AAATCTTTCAAGAACCTA-CGGAAGGAT-GAGTG-A-ATGGGGACCCATTTAAAGAAA--AATTATATCAGA-ACCTCCCAAAAAAA--CAC-AATA---TTCCGTACTCCAATAC---AACCACAGAATATAGCCT-ACAGGAAT-ACAAGAC-ACAGCTCAACAGGGACATGGC-AGAACC--AATCACCAC-ATTGAT-GGGCAGATTT-A-A--TATCCAAA-TTTAAAATTCCGAAATGAAAACACAAC-GATCTTCA-------GAAG----TCACAGAA-TATTACCACAGGTCATCA-TTTAATTAACAGCTAAA-T-G------GAAAT-------------------GAAAT------------C--TACAA--T-CCGC-TC-ATCAATGAACAGT----TAG---AGAC---AC-ACGAGGAACGAT-------GAATTTCTGA-T-G--AAT--T----A-ATAAAACCAGGGACAA----ATTAAA-CCCCAAA--TAACAC--G-GAAAA-T-TAC------------------T--A--GAGAGT--GT-ACCA-GCA--C-GGAAA--ACATG-T-GATACTTTCTTTTCTT--GGACGAGTGG-TA--G-T-T-T-AGCGGGGGATCT-ATA-CCCT-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTAATTG--GAATTTTC--AAC-------G--TACTA-------------------A-CC--AT--A-C-GTC-ACAATT-GAAAA-CG-TCA-CAAATCCTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTA-TTAATAG-TTCATTA-AA---AT--------A--CGA--A---CTC-----ATTAAAATCATTATATTTTTTAGCCC---AT------TTT-AT-A----AC-G-CT--CAT--A-------A-TTATGAAAC-T----ATGGAC-C--ATCAG----ATA-ACTT--G-TA----ATA-TATATTTCTGTCCA--T----------T--T-A------CAT-----------GATgatagacatgatatatattat
gi|5 : --------AATAAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCTCCACAGGACATGAATTAAAATAACAACTAAAAC-GCTAA-GGAAATTCAGTACAC--AATCGCCGGAAATGCAGCCGTATT-CAGTTCAAA-T-CCGC-TC-ATGCATGA-CA-TA-TTTAG--GAGACGAAAC-ACGAGGAACGGC------CGAATTT-TGA-TTG--AAT--TT---ACATAAA-CAAGGGACAA-----TGAAAACCCCGAAAGTA-CAT--G-GTAAA-C-TACAAAC--GTA---TTCA-CTTAA--GGCAGT--GT-ACCA-GCA--CCGAAGA-GACACG-T-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--G-T-TAT-AGCGGGG-AT-T-ATC-AC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TCC-A-GTTTAACTCGT-GAACTTTC--AAC---AGAAG--TGCAACT---TT-A----------------------C-GTC-ACAA-T-GAAAA-CA-TCACC-AAT-CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCA-T---TAG-T-C----------ATAC--AC--A--GGA--A---ACT-----A------------------------C---AA------ATT-ATAA----CC-G-TG--CATAAA-------ATTTATGAACT-T----ATTGAC-T--GTTAA----TTT-AATT--G-T-----ATA-TATATGTATGTC----T----------T--T-A------C-T-----------TATggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|5 : aTGTTAA--T----------C--C-G------CAT-----------TATC-A--CTTTT--GTTTA--T-A---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgtGAGAC---AC-ACGAGGAACGAC------CGAATGTCTGA-T-G--AAT-------A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GAAAATC-TAC-------TAAA---------------AAGT--GT-ACCA-GCAC-C-GAAAA-AACACG-T-GATACTTTCTTTACTC--GGACGAGTGA-TA--G-T-TTT-AGAGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTAAACAAATT-TG--CCG-TATC--TTCAA----------GT-GAACTTTC--AAC---AGAAG--AACTACC--A-T-A-A-GTCTCAC--CC--AA--ATC-GTA-ACAATA-GAAAC-CG-TCA-C-AATCCACTCATAATA-GAACATTCCAACATCC-CACGGACTACTCTA-TTAATAG-TGCATT-TAA---A-----AT--A--CGA--A---CTC-----ATTTTTTAGCC--------------C---GT------TTT-AT-A----AC-G-CT--CATAAA-------A-TTATGAAAC-T----ATGGAT-C--ATTAG----ATA-ACTT--G-TA----ATA-TATATTTCTGACCA--T----------T--T-A------CATGTTAGA-----CATG-A--TATA---ATTTA--T-T---GTA--AACCAAACTCTGTATACTA-T-CA-TA-TTT-
gi|6 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattaA-TAT-TTTATGCCCA--TCTGCATGTTGT--T-AAGTTGCCAT-----------TATT-T--CTTT---GTTTA--T-A---GCA--A-C---GCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCCtatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatataatttattgtaaaccaaactctgtatactatcTT-CAGTACAAGATACCGCATC-TTCAATGAAC--TA-TTTAGGCGAGA----AC--CGAGGAACGACACCAGCCGAATCCTTGAAT-G--AATAATT---A-ATAACACCAAGGGAAA----ATGAAAACCCC--A--T--CACCTGTGTAAA-C-TACA--CCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCA-GCA--C-GAAAAGGACACG-GAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACG-TCTATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGT-CTGAA-AG-TT-CG---CG--ATC--TCCAAGGTTTTACCAAT-GAACTTTC---AC---AGAAAGCTGCAACC---TT-A-CAGTT-C-CA-ACGAAA--ATC-GTCAACAATTAGAAAA-AT-TCA-CAAATC--CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTA-T---TAGTTGCATTATAA---A-----AC--A--CGA--A---CTC-----A------------------------C---AA-------TT-AT-A----GC-GCCG--C-CAAATAT----A-TT-TGGAAT-G----ATGGACTT--GTTAAACTTTTA-AATT--G-TA----TTA-T---TTTATtt
gi|7 : tatTC-A--CTTT----TTAA--T-A---GCA----C---GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|8 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattattttattcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcat-GAAAA-GACACG----ATACTT-CTTTTCTCTTAGACGAATGG-TA--G-A-TAT-AGCGGGG-ATCT-ATA-CC-TTCAC-ATCTC-GT-CTGAACAAATT-CA--CCG-TATC--TTCAA-GTTTTACTCAT-GGATTTTC--AAC---AGAAG--TACAACC--AT--A-C-GTCGCAC--CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAATATTCCAACATCC-C-----TTA-TCTATT---TAG-TGCATTATAA---ATAT--ATGAA--CAAATA---TTT-----G------------------------T---AAGCCCGTTTT-AT-A----CT-G-CG--CATAAAATTAATTA-TTATGTAAC-TAATAATGGAC-TTATTTAA----ATG-AATT--G-TAATATATA-TATATTTCTGTCCA--T----------T--T-A------CGT-----------GAT
gi|8 : ------CAT-----------T-TC-A--CTTT---GTTTA--T-A---GCC--AAC---GCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--agacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|9 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccatttacgtgatagacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgcACAAATT-CG--CCT-TATC--TTCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TACTACT--AT--A-C-GTCACAC--CC--AA--ATC-ATC-ACAACT-GAAAA-CA-TCA-C-AATCCTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCA-T---TAG-TGCATTATAATTTATACCGAC--ATTCAA--ACATCCC-----A------------------------CAGAAA------TTT-CC-A----TTAG-TGATTATAAA-------A-TT-TATAAC-C----A--GA--C--ATTCA------A-AATT----CC----ACA-TGAA---AT-TCCA--T----------TAGT-G------CAT-----------TATA-A--T-------TTTA--T-A---TCA--CAT---GCCACGAATTA-A-GATA-TA-TTT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT
Alignments
lowQualScore : 22 1 1 1 11 1 1 1 1 11 111 111 2222 11 111 11 1 22222 2222 4444444 1 1 1 1 111 1 1 11 222222 1 5555555555555555 2222222 1 111 11111 11 11 11 111 111111 2222222 1111 222222222222222222222222 1111 5555555555555555555555555555 111 11111 6666666666666666666666666666666666666666666 2222222 11111 1111 11111111111111 22222222222222222222222 111 2222 11111111111
lowQualScore : 00 0 3 3 7 3 7 3 88 7 3 6 0 7 0 2 0 0 11 111 777 3 1111 33 2 111 33 0 33333 2 4444 3333333 0 1 0 1 0 0 333 0 0 33 1 222222 0 7777777777777777 3 8 6666666 1 0 8 1 8 5 1 1 0 8 1 8 3 222 66 8 44 999 55555 5 8 1 888 55 6 6 6 2 44 77 000 5 0 666666 1 5 5 77 7777777 5 0 0000 1 66 5 8888 1 888 666666666666666666666666 1 66 5 5 5555 4 888 66 8 66 4 4 2 4 2 4 1 4 8 4 4 4 4 4 1 6 44 3 44 3 1 3 44 555 44 1 2222222222222222222222222222 3 3 3 3 3 3 7 3 4 0 5 4 999 4 0 88 666 66666 99999 55 666 6666666666666666666666666666666666666666666 3 66666 3 3 555 2222222 2 777777 55 88888 22222 2 2 77 2 2222 66666 5 1 1 2 33 22222222222222 2 666666 22 33333333333333333333333 3 55 000 88 3 555 3333 555 0 3 3 3 5 3 888888 3 3 555 44444444444 88 3
lowQualScore : .. . . . . . . . .. . . . . . . . . . .. ... ... . .... .. . ... .. . ..... . .... ....... . . . . . . ... . . .. . ...... . ................ . . ....... . . . . . . . . . . . . . ... .. . .. ... ..... . . . ... .. . . . . .. .. ... . . ...... . . . .. ....... . . .... . .. . .... . ... ........................ . .. . . .... . ... .. . .. . . . . . . . . . . . . . . . . .. . .. . . . .. ... .. . ............................ . . . . . . . . . . . . ... . . .. ... ..... ..... .. ... ........................................... . ..... . . ... ....... . ...... .. ..... ..... . . .. . .... ..... . . . . .. .............. . ...... .. ....................... . .. ... .. . ... .... ... . . . . . . ...... . . ... ........... .. .
lowQualScore : 00 7 3 3 3 3 3 7 33 3 3 7 0 0 0 5 0 2 00 000 555 2 2222 88 5 000 22 0 88888 5 5555 5555555 0 0 0 0 0 0 888 0 0 88 0 222222 0 6666666666666666 8 0 0000000 0 8 0 4 0 8 0 4 8 0 4 8 8 444 00 0 00 666 88888 0 0 0 222 88 7 7 7 5 00 55 000 7 1 444444 7 7 7 99 7777777 7 1 6666 0 99 0 1111 0 222 444444444444444444444444 0 99 0 0 2222 4 000 11 9 11 4 0 2 4 9 4 1 4 9 4 4 4 0 0 8 7 66 3 66 3 6 3 66 888 66 8 0000000000000000000000000000 6 6 6 6 6 6 3 6 0 7 3 0 555 0 8 99 444 55555 11111 00 444 2222222222222222222222222222222222222222222 1 77777 1 1 666 1111111 9 444444 99 00000 77777 7 7 33 7 0000 77777 0 6 6 5 44 66666666666666 5 111111 99 33333333333333333333333 6 00 000 66 3 888 8888 444 2 1 1 1 7 1 888888 1 1 444 66666666666 55 3
consensus : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC--A----A-AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA----ATA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( family-3843 ) : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC-------A-AATACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA----NTA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|1 : CCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTTA-TGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTGATA-TGGA---CCATTCAA-GAAGA----CAT--CA-T-A-ACTCCCAAAAAAA-TTGTAA-GA---G-CCGCACGC-GACACA----CTACAGAATACA-C-----AGGAAT-ATAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCACCACTGAT-G--CAGATAC-ACT--TATCCGAACATTAAA----C-------A-A-TACAGC-GATCTCCA-------GAAGATA-TTACAGAATCATT-CCACCAGACATGA-TTAAAATAACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAA-TCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAG-CGAGAC---ACAACGAGGAACG-C------CGAA-TTCTGA-T-AATAAT--TTTTAA-ATAAACACA-GGACAA----ATGAAAAACCCAAA--TA-CAT----GTAAA-CTTACA--C--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTT-GATACTTTCTTTTCTC--GGACGAGTGGATA--GTT-TAT-AGC-GGG-ATCT-ATACCC-T-CAC-GTCTC-GTGCGAAACAGATT-CT--CCG-TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AAC---AGAAG--TGCAAAC--TTT-A-T-GTCGCACT-TG--AAACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATCCTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTA-T---TAG-TGC----------ATAC--ACT-A--TGA--A---CTC-----A------------------------CA--AA------TTGAT-A----CC-G-CG--CAT-AA-------A-TTATGGAACTT----ATTGAC-T--GTTAAT---TTA-A-GTT--GATA----A-----TA-TATATTTATGT-CCA--T----------T---TAA------C--AT-----------TA----------T
gi|1 : ------C--AT-----------TA----------TCCA--CTTT---GTTTAA-TGA---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCCagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|10 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc---ATTC--AC--A--CGA--A---CTC-----A------------------------C---AT------ATCAT-A----CC-T-CA--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTCAA----TTA-A-ATT--G-TA----A--------------TATGT-CCA--T----------T---T-A------C--AT-----------TA----------T
gi|10 : ------C--AT-----------TA----------TC-A--CTAT---GTTAAAAT-A---GCA--A-C---GCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCCagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|11 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgcTCTT-GT-CTGAACAAATTTCA--CCT-TATC--ATTAA-GTTTTACTTGT-GAACATTC--AAC---AGAAG--TACTACA--AT--A-C-GTC-T-CA-CCT-AA--ATT-GTC-ACAACT-GAAAA-CA-TTA-C-AATCCTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAA-T---TAG-TGCATTATAA---A-----AT--A--CAA--A---TTC-----A------------------------T----A------TTTAT-A----CT-G-TG--TATAAA-------A-TTATAGAAC-T----AAGGGC-T--AATAA----ATT-A-ATT--G-TAAT--A-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--GT-----------GA----------T
gi|12 : aAAACCAGGAATAATTAAATTAAAACCCCAAA--TA-TAC--G-GAGAA-C-TACA--T--GTAAA-TTTA-CA--A--GAGAGT--GTCATCA-GTG--CTGAAGA-GAAACA-T-GATAATTTCTTTTCTT--GGACAAGTGG-TA--G-T-aaacaatg
gi|12 : -TAA-AGCAGGG-AC-----A-C--T-CAC-ATCTC-GT-CTGAACAAATTTCA--CCG-TATC--TTCAA-GTTTTACTTGT-GAACTTTC--AACAGAAGAAG--TACTACA--A-T-A-T-GTC-ctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|13 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaaTA-A-CTT--G-TA----A-----TA-TATATTC-TGA-CCA--T----------T---T-A------C--A
gi|13 : a------C--AT-----------TA----------TT-TTTCTTT---GTTTA--T-ACATGTAGCAAC---GCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCCatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgccattatttttctttgtttatacatgtagcaacgctccaattctatgtatatttatagaaatcgctcccggcccgaaattcttccttccagtagtgaaattatcct
gi|14 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCt
gi|15 : agagaacaagtaatataaggtaaacatttttcattctgcaatctgccactgttttaagtcgccattcaactcgtctttgttatatagcaacgagcatccgtgcttcctcttttgttgacgatagtcttgtattaaagc-TATATTGATGC-CCA--T----------C---T-G------C--ATGTGTAAGTCGCCA----------TT-A--TTTTTCTGTTTA--T-A---GCA--A-C---GCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACCa
gi|16 : tgtaaaatcaaaactctgtatactatATT-CG--CCA-TATC--TTCAA-GTTTTACTTGT-GAACTTTA--AAC---AAAAG--TTCTACC--AT--G-C-GTCACAC--CC--AA--ATT-GTC-ACAATT-GAAAA-CG-TCG-C-AATCCTCACATAATA-GAACAt
gi|17 : a-A---GCA--A-C---GCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCC
gi|19 : C---GCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|2 : TCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAA-CTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGA-TCGAAGAAA-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGTTA-CCTCCCAAAAAAAATCGTAA-TA---G-CCGCACGCCAACACA---GCTACAGAATACA-C-----AGGAAT-ACAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGATTG--CAGATAC-A-T--TATCCGAA-ATTAAA----C-------A-A-TACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CATT-CCACAGGACATGA-TTAAA-TAACAACTAAA-T-GCTAA-GGAAATTTA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CAAGAC---AC-ACGAGGAACGAC------CGAATTCTTGA-T-G--AAT--TT---A-ATAAAACCAGGAACAA----ATGAAAACCCCAA---TA-CAT--G-GTAAA-C-TACA--C--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACAAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-ATCTC-GT-CTGAACAGATT-CG--CCA-TATC--TCCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TGCAACTTAATTTA-C-GTCATATA-CCGTAAC-ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTA-T---TAG-TGCATTAAAA---ATAC--AC--A--CAA--A---CTC-----A------------------------C---AA------ATTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTTAA----TTA-A-ATT--G-TG----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCATTAAT---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|20 : taa-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|21 : tattatcttcaaaTAAA-------A-TTATGGAAC-T----ATGGAC-C--ATTAA----ATA-A-ATT--G-TA----A-----Ta
gi|3 : actTCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATC--ACCGAAACTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC-AA-GCTT-CAAGAACTCA-CAGAAGGAT-TAGTGA-AATGGA---CCATTCAAAGAAGA----TATATCAGT-AACCTCCCAAAAAAA-TCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAACAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGAC---AATCACCTT-ATTGAT-G--GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAG---ATAATACA-C-GATCTT-----------AAATAGTCACAGAA-TATTACCACTGGTC-TCA-TTTAATTAACA-CTAAA-CAGGAAA-CAAAATTGA-GTCAC--AATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TC-ATCAATGAACAGT----TA----AGAC---AC-ACG-GGAACGAC------CGAATGTCTGA-T-G--AAT-------A-AGTAAACCAGGGACAA----ATTAAAACCCCAAA--TA-C----G-GGAAA----------------A-TCTA-CT--A--AAGAGT--GT-ACCA-GCAC-C-GAAAA-AACATG-T-GATGCTTTCTTTTCT---GGACGAGTGA-TA--G-T-TTT-AGCGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTGAACA-ATT-CGCCCCGTTATC--TTCAA----------GT-GAATTTTCCAAAC---AGAAG--TACTACC--ATA-AGC-GTT-CACACCC--AAT-ATCGGTC-AACATT-GGAAACCG-TCA-C-AACCCTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTA-TAA-TAG-TGCATT-TAA---ATAA--AC-----TG---A---CTCTTTTTAGCC---------------------C---AG------TTTTT-AAACGCC-T-CG----TAAA-------A-TTATGAAACGT----ATGGAT-C--ATTAG----ATATA-ACTTGG-TAC---A-----TATTATATTTCTGA-CCATTT----------T---T-A------C--AT-----------T
gi|4 : accACCC-AAATCTTTCAAGAACCTA-CGGAAGGAT-GAGTGA-A-TGGGGACCCATTTAAAGAAAAATTATAT--CAGA-A-CCTCCCAAAAAAA--CACAA-TA---TTCCGTACTCCAATACA---ACCACAGAATATAGCCTA-CAGGAAT-ACAAGACA-CAGCTCAACAGGGACATGGCA-GAACC--AATCACCAC-ATTGAT-GGGCAGATTT-A-A--TATCCAAA-TTTAAAATTCCGAAATGAA-AACACAAC-GATCTTCA-------GAAG----TCACAGAA-TATTACCACAGGTCATCA-TTTAATTAACAGCTAAA-T-G------GAAAT--------------------GAAAT------------C--TACAA--T-CCGC-TC-ATCAATGAACAGT----TAG---AGAC---AC-ACGAGGAACGAT-------GAATTTCTGA-T-G--AAT--T----A-ATAAAACCAGGGACAA----ATTAAA-CCCCAAA--TAACAC--G-GAAAA-T-TAC------------------T--A--GAGAGT--GT-ACCA-GCA--C-GGAAA--ACATG-T-GATACTTTCTTTTCTT--GGACGAGTGG-TA--G-T-T-T-AGCGGGGGATCT-ATA-CCCT-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTAATTG--GAATTTTC--AAC-------G--TACTA-------------------A-CC--AT--A-C-GTC-ACAATT-GAAAA-CG-TCA-CAAATCCTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTA-TTAATAG-TTCATTA-AA---AT--------A--CGA--A---CTC-----ATTAAAATCATTATATTTTTTAGCCC---AT------TTTAT-A----AC-G-CT--CAT--A-------A-TTATGAAAC-T----ATGGAC-C--ATCAG----ATA-A-CTT--G-TA----A-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--AT-----------GA----------Tgatagacatgatatatattat
gi|5 : -------A-AATAAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCTCCACAGGACATGAATTAAAATAACAACTAAAAC-GCTAA-GGAAATTCAGTACAC--A-ATCGCCGGAAATGCAGCCGTATT-CAGTTCAAA-T-CCGC-TC-ATGCATGA-CA-TA-TTTAG--GAGACGAAAC-ACGAGGAACGGC------CGAATTT-TGA-TTG--AAT--TT---ACATAAA-CAAGGGACAA-----TGAAAACCCCGAAAGTA-CAT--G-GTAAA-C-TACAAAC--GTA---TTCA-CTTAA--GGCAGT--GT-ACCA-GCA--CCGAAGA-GACACG-T-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--G-T-TAT-AGCGGGG-AT-T-ATC-AC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TCC-A-GTTTAACTCGT-GAACTTTC--AAC---AGAAG--TGCAACT---TT-A----------------------C-GTC-ACAA-T-GAAAA-CA-TCACC-AAT-CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCA-T---TAG-T-C----------ATAC--AC--A--GGA--A---ACT-----A------------------------C---AA------ATTATAA----CC-G-TG--CATAAA-------ATTTATGAACT-T----ATTGAC-T--GTTAA----TTT-A-ATT--G-T-----A-----TA-TATATGTATGT-C----T----------T---T-A------C---T-----------TA----------Tggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|5 : TGT-TAA--T----------C---C-G------C--AT-----------TA----------TC-A--CTTTT--GTTTA--T-A---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgtGAGAC---AC-ACGAGGAACGAC------CGAATGTCTGA-T-G--AAT-------A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GAAAATC-TAC-------TAAA---------------AAGT--GT-ACCA-GCA--CCGAAAA-AACACG-T-GATACTTTCTTTACTC--GGACGAGTGA-TA--G-T-TTT-AGAGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTAAACAAATT-TG--CCG-TATC--TTCAA----------GT-GAACTTTC--AAC---AGAAG--AACTACC--A-T-A-A-GTCTCAC--CC--AA--ATC-GTA-ACAATA-GAAAC-CG-TCA-C-AATCCACTCATAATA-GAACATTCCAACATCC-CACGGACTACTCTA-TTAATAG-TGCATT-TAA---A-----AT--A--CGA--A---CTC-----ATTTTTTAGCC--------------C---GT------TTTAT-A----AC-G-CT--CATAAA-------A-TTATGAAAC-T----ATGGAT-C--ATTAG----ATA-A-CTT--G-TA----A-----TA-TATATTTCTGA-CCA--T----------T---T-A------C--ATGTTAGA-----CA----------TG-A--TATA---ATTTA--T-T---GTA--AACCAAACTCTGTATACTA-T-CA-TA-TTT-
gi|6 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattaA-TAT-TTTATGC-CCA--TCTGCATGTTGT---T-AAGTTGCC--AT-----------TA----------TT-T--CTTT---GTTTA--T-A---GCA--A-C---GCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCCtatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatataatttattgtaaaccaaactctgtatactatcTT-CAGTACAAGATACCGCATC-TTCAATGAAC--TA-TTTAGGCGAGA----AC--CGAGGAACGACACCAGCCGAATCCTTGAAT-G--AATAATT---A-ATAACACCAAGGGAAA----ATGAAAACCCC--A--T--CACCTGTGTAAA-C-TACA--CCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCA-GCA--C-GAAAAGGACACG-GAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACG-TCTATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGT-CTGAA-AG-TT-CG---CG--ATC--TCCAAGGTTTTACCAAT-GAACTTTC---AC---AGAAAGCTGCAACC---TT-A-CAGTT-C-CA-ACGAAA--ATC-GTCAACAATTAGAAAA-AT-TCA-CAAATC--CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTA-T---TAGTTGCATTATAA---A-----AC--A--CGA--A---CTC-----A------------------------C---AA-------TTAT-A----GC-GCCG--C-CAAATAT----A-TT-TGGAAT-G----ATGGACTT--GTTAAACTTTTA-A-ATT--G-TA----T-----TA-T---TTTATtt
gi|7 : tatA------TTCAT-A----TT-T-CG--TATAAATAA----A-TTTTAGAAC-A----A---AC-T--ATGAT----AGA-ATATT--T-TA----A-----TGCTATCTGCATGTGTTG--T----------TAAGT-A------CGCAT-----------T------------C-A--CTTT----TTAA--T-A---GCA----C---GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|8 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattatttt-GAAAA-GACACG----ATACTT-CTTTTCTCTTAGACGAATGG-TA--G-A-TAT-AGCGGGG-ATCT-ATA-CC-TTCAC-ATCTC-GT-CTGAACAAATT-CA--CCG-TATC--TTCAA-GTTTTACTCAT-GGATTTTC--AAC---AGAAG--TACAACC--AT--A-C-GTCGCAC--CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAATATTCCAACATCC-C-----TTA-TCTATT---TAG-TGCATTATAA---ATAT--ATGAA--CAAATA---TTT-----G------------------------T---AAGCCCGTTTTAT-A----CT-G-CG--CATAAAATTAATTA-TTATGTAAC-TAATAATGGAC-TTATTTAA----ATG-A-ATT--G-TAATATA-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--GT-----------GA----------T
gi|8 : A------TTTA--------C-G-TG---ATAGAC------A-TTATATAAT-T----A---AT-T--ATAAA----ATA-A-ACTCTG-TA----AACAATCA-TAT-TTTATTC-TCA--T----------C---T-G------C--ATGTTGT------TAAGTTGCCATTTC-A--CTTT---GTTTA--T-A---GCC--AAC---GCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--agacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|9 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccACAAATT-CG--CCT-TATC--TTCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TACTACT--AT--A-C-GTCACAC--CC--AA--ATC-ATC-ACAACT-GAAAA-CA-TCA-C-AATCCTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCA-T---TAG-TGCATTATAATTTATACCGAC--ATTCAA--ACATCCC-----A------------------------CAGAAA------TTTCC-A----TTAG-TGATTATAAA-------A-TT-TATAAC-C----A--GA--C--ATTCA------A-A-ATT----CC----A-----CA-TGAA---AT-T-CCA--T----------TAG-T-G------C--AT-----------TA----------TA-A--T-------TTTA--T-A---TCA--CAT---GCCACGAATTA-A-GATA-TA-TTT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT
Alignments
lowQualScore : 22 1 1 1 11 1 1 1 1 11 111 111 2222 11 111 11 1 22222 2222 4444444 1 1 1 1 111 1 1 11 222222 1 55555555555555555555 2222222 1 111 11111 11 11 11 111 111111 2222222 1111 222222222222222222222222 11 5555555555555555555555555555 111 11111 6666666666666666666666666666666666666666666 2222222 1111 11111111111111 22222222222222222222222 111 2222 11111111111
lowQualScore : 00 0 3 3 7 3 7 3 88 7 3 6 0 7 0 2 0 0 11 111 777 3 1111 33 2 111 33 0 33333 2 4444 3333333 0 1 0 1 0 0 333 0 0 33 1 222222 0 11111111111111111111 3 8 6666666 1 0 8 1 8 5 1 1 0 8 1 8 3 222 66 8 44 999 55555 5 8 1 888 55 6 6 6 2 44 77 000 5 0 666666 1 5 5 77 7777777 5 0 0000 1 66 5 8888 1 888 666666666666666666666666 1 66 5 5 66 8 4 888 66 8 66 4 4 2 4 2 4 1 4 8 4 4 4 4 4 1 6 44 3 44 3 1 3 44 555 44 1 2222222222222222222222222222 3 3 3 3 3 3 7 3 4 0 5 4 999 4 0 88 666 66666 99999 55 666 6666666666666666666666666666666666666666666 3 66666 3 3 555 2222222 2 777777 55 88888 999999 2 2 77 2 2222 66666 5 1 1 2 33 22222222222222 2 666666 22 33333333333333333333333 3 55 000 88 3 555 3333 555 0 3 3 3 5 3 888888 3 3 555 44444444444 88 3
lowQualScore : .. . . . . . . . .. . . . . . . . . . .. ... ... . .... .. . ... .. . ..... . .... ....... . . . . . . ... . . .. . ...... . .................... . . ....... . . . . . . . . . . . . . ... .. . .. ... ..... . . . ... .. . . . . .. .. ... . . ...... . . . .. ....... . . .... . .. . .... . ... ........................ . .. . . .. . . ... .. . .. . . . . . . . . . . . . . . . . .. . .. . . . .. ... .. . ............................ . . . . . . . . . . . . ... . . .. ... ..... ..... .. ... ........................................... . ..... . . ... ....... . ...... .. ..... ...... . . .. . .... ..... . . . . .. .............. . ...... .. ....................... . .. ... .. . ... .... ... . . . . . . ...... . . ... ........... .. .
lowQualScore : 00 7 3 3 3 3 3 7 33 3 3 7 0 0 0 5 0 2 00 000 555 2 2222 88 5 000 22 0 88888 5 5555 5555555 0 0 0 0 0 0 888 0 0 88 0 222222 0 44444444444444444444 8 0 0000000 0 8 0 4 0 8 0 4 8 0 4 8 8 444 00 0 00 666 88888 0 0 0 222 88 7 7 7 5 00 55 000 7 1 444444 7 7 7 99 7777777 7 1 6666 0 99 0 1111 0 222 444444444444444444444444 0 99 0 0 99 9 4 000 11 9 11 4 0 2 4 9 4 1 4 9 4 4 4 0 0 8 7 66 3 66 3 6 3 66 888 66 8 0000000000000000000000000000 6 6 6 6 6 6 3 6 0 7 3 0 555 0 8 99 444 55555 11111 00 444 2222222222222222222222222222222222222222222 1 77777 1 1 666 1111111 9 444444 99 00000 555555 7 7 33 7 0000 77777 0 6 6 5 44 66666666666666 5 111111 99 33333333333333333333333 6 00 000 66 3 888 8888 444 2 1 1 1 7 1 888888 1 1 444 66666666666 55 3
consensus : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( family-3843 ) : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|1 : CCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTTA-TGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTGATA-TGGA---CCATTCAA-GAAGA----CAT--CA-T-A-ACTCCCAAAAAAA-TTGTAA-GA---G-CCGCACGC-GACACA----CTACAGAATACA-C-----AGGAAT-ATAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCACCACTGAT-G--CAGATAC-ACT--TATCCGAACATTAAA----C----AA--T------ACAGC-GATCTCCA-------GAAGATA-TTACAGAATCATT-CCACCAGACATGA-TTAAAATAACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAA-TCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAG-CGAGAC---ACAACGAGGAACG-C------CGAA-TTCTGA-T-AATAAT--TTTTAA-ATAAACACA-GGACAA----ATGAAAAACCCAAA--TA-CAT----GTAAA-CTTACA--C--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTT-GATACTTTCTTTTCTC--GGACGAGTGGATA--GTT-TAT-AGC-GGG-ATCT-ATACCC-T-CAC-GTCTC-GTGCGAAACAGATT-CT--CCG-TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AAC---AGAAG--TGCAAAC--TTT-A-T-GTCGCACT-TG--AAACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATCCTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTA-T---TAG-TGC----------ATAC--ACT-A--TGA--A---CTC-----A------------------------CA--AA------TTGAT-A----CC-G-CG--CAT-AA-------A-TTATGGAACTT----ATTGAC-T--GTTAATT----TA-A-GTT--GATA----A-----TA-TATATTTATGT-CCA--T----------T---TAA------C--AT-----------TA----------T
gi|1 : ------C--AT-----------TA----------TCCA--CTTT---GTTTAA-TGA---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCCagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|10 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc---ATTC--AC--A--CGA--A---CTC-----A------------------------C---AT------ATCAT-A----CC-T-CA--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTCAA-T----TA-A-ATT--G-TA----A--------------TATGT-CCA--T----------T---T-A------C--AT-----------TA----------T
gi|10 : ------C--AT-----------TA----------TC-A--CTAT---GTTAAAAT-A---GCA--A-C---GCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCCagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|11 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgcTCTT-GT-CTGAACAAATTTCA--CCT-TATC--ATTAA-GTTTTACTTGT-GAACATTC--AAC---AGAAG--TACTACA--AT--A-C-GTC-T-CA-CCT-AA--ATT-GTC-ACAACT-GAAAA-CA-TTA-C-AATCCTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAA-T---TAG-TGCATTATAA---A-----AT--A--CAA--A---TTC-----A------------------------T----A------TTTAT-A----CT-G-TG--TATAAA-------A-TTATAGAAC-T----AAGGGC-T--AATAA-A----TT-A-ATT--G-TAAT--A-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--GT-----------GA----------T
gi|12 : aAAACCAGGAATAATTAAATTAAAACCCCAAA--TA-TAC--G-GAGAA-C-TACA--T--GTAAA-TTTA-CA--A--GAGAGT--GTCATCA-GTG--CTGAAGA-GAAACA-T-GATAATTTCTTTTCTT--GGACAAGTGG-TA--G-T-aaacaatg
gi|12 : -TAA-AGCAGGG-AC-----A-C--T-CAC-ATCTC-GT-CTGAACAAATTTCA--CCG-TATC--TTCAA-GTTTTACTTGT-GAACTTTC--AACAGAAGAAG--TACTACA--A-T-A-T-GTC-ctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|13 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaa-A----TA-A-CTT--G-TA----A-----TA-TATATTC-TGA-CCA--T----------T---T-A------C--A
gi|13 : ------C--AT-----------TA----------TT-TTTCTTT---GTTTA--T-ACATGTAGCAAC---GCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCCatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgccattatttttctttgtttatacatgtagcaacgctccaattctatgtatatttatagaaatcgctcccggcccgaaattcttccttccagtagtgaaattatcct
gi|14 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCt
gi|15 : agagaacaagtaatataaggtaaacatttttcattctgcaatctgccactgttttaagtcgccattcaactcgtctttgttatatagcaacgagcatccgtgcttcctcttttgttgacgatagtcttgtattaaagc-TATATTGATGC-CCA--T----------C---T-G------C--ATGTGTAAGTCGCCA----------TT-A--TTTTTCTGTTTA--T-A---GCA--A-C---GCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACCa
gi|16 : tgtaaaatcaaaactctgtatactatATT-CG--CCA-TATC--TTCAA-GTTTTACTTGT-GAACTTTA--AAC---AAAAG--TTCTACC--AT--G-C-GTCACAC--CC--AA--ATT-GTC-ACAATT-GAAAA-CG-TCG-C-AATCCTCACATAATA-GAACAt
gi|17 : a-A---GCA--A-C---GCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCC
gi|19 : C---GCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|2 : TCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAA-CTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGA-TCGAAGAAA-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGTTA-CCTCCCAAAAAAAATCGTAA-TA---G-CCGCACGCCAACACA---GCTACAGAATACA-C-----AGGAAT-ACAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGATTG--CAGATAC-A-T--TATCCGAA-ATTAAA----C----AA--T------ACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CATT-CCACAGGACATGA-TTAAA-TAACAACTAAA-T-GCTAA-GGAAATTTA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CAAGAC---AC-ACGAGGAACGAC------CGAATTCTTGA-T-G--AAT--TT---A-ATAAAACCAGGAACAA----ATGAAAACCCCAA---TA-CAT--G-GTAAA-C-TACA--C--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACAAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-ATCTC-GT-CTGAACAGATT-CG--CCA-TATC--TCCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TGCAACTTAATTTA-C-GTCATATA-CCGTAAC-ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTA-T---TAG-TGCATTAAAA---ATAC--AC--A--CAA--A---CTC-----A------------------------C---AA------ATTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTTAA-T----TA-A-ATT--G-TG----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCATTAAT---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|20 : taa-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|21 : tattatcttcaaaTAAA-------A-TTATGGAAC-T----ATGGAC-C--ATTAA-A----TA-A-ATT--G-TA----A-----Ta
gi|3 : actTCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATC--ACCGAAACTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC-AA-GCTT-CAAGAACTCA-CAGAAGGAT-TAGTGA-AATGGA---CCATTCAAAGAAGA----TATATCAGT-AACCTCCCAAAAAAA-TCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAACAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGAC---AATCACCTT-ATTGAT-G--GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAGATAAT------ACA-C-GATCTT-----------AAATAGTCACAGAA-TATTACCACTGGTC-TCA-TTTAATTAACA-CTAAA-CAGGAAA-CAAAATTGA-GTCAC--AATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TC-ATCAATGAACAGT----TA----AGAC---AC-ACG-GGAACGAC------CGAATGTCTGA-T-G--AAT-------A-AGTAAACCAGGGACAA----ATTAAAACCCCAAA--TA-C----G-GGAAA----------------A-TCTA-CT--A--AAGAGT--GT-ACCA-GCAC-C-GAAAA-AACATG-T-GATGCTTTCTTTTCT---GGACGAGTGA-TA--G-T-TTT-AGCGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTGAACA-ATT-CGCCCCGTTATC--TTCAA----------GT-GAATTTTCCAAAC---AGAAG--TACTACC--ATA-AGC-GTT-CACACCC--AAT-ATCGGTC-AACATT-GGAAACCG-TCA-C-AACCCTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTA-TAA-TAG-TGCATT-TAA---ATAA--AC-----TG---A---CTCTTTTTAGCC---------------------C---AG------TTTTT-AAACGCC-T-CG----TAAA-------A-TTATGAAACGT----ATGGAT-C--ATTAG-A----TATA-ACTTGG-TAC---A-----TATTATATTTCTGA-CCATTT----------T---T-A------C--AT-----------T
gi|4 : accACCC-AAATCTTTCAAGAACCTA-CGGAAGGAT-GAGTGA-A-TGGGGACCCATTTAAAGAAAAATTATAT--CAGA-A-CCTCCCAAAAAAA--CACAA-TA---TTCCGTACTCCAATACA---ACCACAGAATATAGCCTA-CAGGAAT-ACAAGACA-CAGCTCAACAGGGACATGGCA-GAACC--AATCACCAC-ATTGAT-GGGCAGATTT-A-A--TATCCAAA-TTTAAAATTCC----GAAATGAAAACACAAC-GATCTTCA-------GAAG----TCACAGAA-TATTACCACAGGTCATCA-TTTAATTAACAGCTAAA-T-G------GAAAT--------------------GAAAT------------C--TACAA--T-CCGC-TC-ATCAATGAACAGT----TAG---AGAC---AC-ACGAGGAACGAT-------GAATTTCTGA-T-G--AAT--T----A-ATAAAACCAGGGACAA----ATTAAA-CCCCAAA--TAACAC--G-GAAAA-T-TAC------------------T--A--GAGAGT--GT-ACCA-GCA--C-GGAAA--ACATG-T-GATACTTTCTTTTCTT--GGACGAGTGG-TA--G-T-T-T-AGCGGGGGATCT-ATA-CCCT-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTAATTG--GAATTTTC--AAC-------G--TACTA-------------------A-CC--AT--A-C-GTC-ACAATT-GAAAA-CG-TCA-CAAATCCTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTA-TTAATAG-TTCATTA-AA---AT--------A--CGA--A---CTC-----ATTAAAATCATTATATTTTTTAGCCC---AT------TTTAT-A----AC-G-CT--CAT--A-------A-TTATGAAAC-T----ATGGAC-C--ATCAG-A----TA-A-CTT--G-TA----A-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--AT-----------GA----------Tgatagacatgatatatattat
gi|5 : AAAT------AAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCTCCACAGGACATGAATTAAAATAACAACTAAAAC-GCTAA-GGAAATTCAGTACAC--A-ATCGCCGGAAATGCAGCCGTATT-CAGTTCAAA-T-CCGC-TC-ATGCATGA-CA-TA-TTTAG--GAGACGAAAC-ACGAGGAACGGC------CGAATTT-TGA-TTG--AAT--TT---ACATAAA-CAAGGGACAA-----TGAAAACCCCGAAAGTA-CAT--G-GTAAA-C-TACAAAC--GTA---TTCA-CTTAA--GGCAGT--GT-ACCA-GCA--CCGAAGA-GACACG-T-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--G-T-TAT-AGCGGGG-AT-T-ATC-AC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TCC-A-GTTTAACTCGT-GAACTTTC--AAC---AGAAG--TGCAACT---TT-A----------------------C-GTC-ACAA-T-GAAAA-CA-TCACC-AAT-CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCA-T---TAG-T-C----------ATAC--AC--A--GGA--A---ACT-----A------------------------C---AA------ATTATAA----CC-G-TG--CATAAA-------ATTTATGAACT-T----ATTGAC-T--GTTAA-T----TT-A-ATT--G-T-----A-----TA-TATATGTATGT-C----T----------T---T-A------C---T-----------TA----------Tggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|5 : TGT-TAA--T----------C---C-G------C--AT-----------TA----------TC-A--CTTTT--GTTTA--T-A---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgtGAGAC---AC-ACGAGGAACGAC------CGAATGTCTGA-T-G--AAT-------A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GAAAATC-TAC-------TAAA---------------AAGT--GT-ACCA-GCAC-C-GAAAA-AACACG-T-GATACTTTCTTTACTC--GGACGAGTGA-TA--G-T-TTT-AGAGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTAAACAAATT-TG--CCG-TATC--TTCAA----------GT-GAACTTTC--AAC---AGAAG--AACTACC--A-T-A-A-GTCTCAC--CC--AA--ATC-GTA-ACAATA-GAAAC-CG-TCA-C-AATCCACTCATAATA-GAACATTCCAACATCC-CACGGACTACTCTA-TTAATAG-TGCATT-TAA---A-----AT--A--CGA--A---CTC-----ATTTTTTAGCC--------------C---GT------TTTAT-A----AC-G-CT--CATAAA-------A-TTATGAAAC-T----ATGGAT-C--ATTAG-A----TA-A-CTT--G-TA----A-----TA-TATATTTCTGA-CCA--T----------T---T-A------C--ATGTTAGA-----CA----------TG-A--TATA---ATTTA--T-T---GTA--AACCAAACTCTGTATACTA-T-CA-TA-TTT-
gi|6 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattaA-TAT-TTTATGC-CCA--TCTGCATGTTGT---T-AAGTTGCC--AT-----------TA----------TT-T--CTTT---GTTTA--T-A---GCA--A-C---GCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCCtatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatataatttattgtaaaccaaactctgtatactatcTT-CAGTACAAGATACCGCATC-TTCAATGAAC--TA-TTTAGGCGAGA----AC--CGAGGAACGACACCAGCCGAATCCTTGAAT-G--AATAATT---A-ATAACACCAAGGGAAA----ATGAAAACCCC--A--T--CACCTGTGTAAA-C-TACA--CCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCA-GCA--C-GAAAAGGACACG-GAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACG-TCTATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGT-CTGAA-AG-TT-CG---CG--ATC--TCCAAGGTTTTACCAAT-GAACTTTC---AC---AGAAAGCTGCAACC---TT-A-CAGTT-C-CA-ACGAAA--ATC-GTCAACAATTAGAAAA-AT-TCA-CAAATC--CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTA-T---TAGTTGCATTATAA---A-----AC--A--CGA--A---CTC-----A------------------------C---AA-------TTAT-A----GC-GCCG--C-CAAATAT----A-TT-TGGAAT-G----ATGGACTT--GTTAA-ACTTTTA-A-ATT--G-TA----T-----TA-T---TTTATtt
gi|7 : tatA------TTCAT-A----TT-T-CG--TATAAATAA----A-TTTTAGAAC-A----A---AC-T--ATGAT-A----GA-ATATT--T-TA----A-----TGCTATCTGCATGTGTTG--T----------TAAGT-A------CGCAT-----------T------------C-A--CTTT----TTAA--T-A---GCA----C---GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|8 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattatttt-GAAAA-GACACG----ATACTT-CTTTTCTCTTAGACGAATGG-TA--G-A-TAT-AGCGGGG-ATCT-ATA-CC-TTCAC-ATCTC-GT-CTGAACAAATT-CA--CCG-TATC--TTCAA-GTTTTACTCAT-GGATTTTC--AAC---AGAAG--TACAACC--AT--A-C-GTCGCAC--CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAATATTCCAACATCC-C-----TTA-TCTATT---TAG-TGCATTATAA---ATAT--ATGAA--CAAATA---TTT-----G------------------------T---AAGCCCGTTTTAT-A----CT-G-CG--CATAAAATTAATTA-TTATGTAAC-TAATAATGGAC-TTATTTAA-A----TG-A-ATT--G-TAATATA-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--GT-----------GA----------T
gi|8 : A------TTTA--------C-G-TG---ATAGAC------A-TTATATAAT-T----A---AT-T--ATAAA-A----TA-A-ACTCTG-TA----AACAATCA-TAT-TTTATTC-TCA--T----------C---T-G------C--ATGTTGT------TAAGTTGCCATTTC-A--CTTT---GTTTA--T-A---GCC--AAC---GCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--agacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|9 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccACAAATT-CG--CCT-TATC--TTCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TACTACT--AT--A-C-GTCACAC--CC--AA--ATC-ATC-ACAACT-GAAAA-CA-TCA-C-AATCCTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCA-T---TAG-TGCATTATAATTTATACCGAC--ATTCAA--ACATCCC-----A------------------------CAGAAA------TTTCC-A----TTAG-TGATTATAAA-------A-TT-TATAAC-C----A--GA--C--ATTCA-------A-A-ATT----CC----A-----CA-TGAA---AT-T-CCA--T----------TAG-T-G------C--AT-----------TA----------TA-A--T-------TTTA--T-A---TCA--CAT---GCCACGAATTA-A-GATA-TA-TTT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT
Alignments
lowQualScore : 22 1 1 1 11 1 1 1 1 11 111 111 2222 11 111 11 1 22222 2222 4444444 1 1 1 1 111 1 1 11 222222 1 55555555555555555555 2222222 1 111 11111 11 11 11 111 111111 2222222 1111 222222222222222222222222 11 5555555555555555555555555555 111 11111 6666666666666666666666666666666666666666666 2222222 1111 11111111111111 22222222222222222222222 111 2222 11111111111
lowQualScore : 00 0 3 3 7 3 7 3 88 7 3 6 0 7 0 2 0 0 11 111 777 3 1111 33 2 111 33 0 33333 2 4444 3333333 0 1 0 1 0 0 333 0 0 33 1 222222 0 11111111111111111111 3 8 6666666 1 0 8 1 8 5 1 1 0 8 1 8 3 222 66 8 44 999 55555 5 8 1 888 55 6 6 6 2 44 77 000 5 0 666666 1 5 5 77 7777777 5 0 0000 1 66 5 8888 1 888 666666666666666666666666 1 66 5 5 66 8 4 888 66 8 66 4 4 2 4 2 4 1 4 8 4 4 4 4 4 1 6 44 3 44 3 1 3 44 555 44 1 2222222222222222222222222222 3 3 3 3 3 3 7 3 4 0 5 4 999 4 0 88 666 66666 99999 55 666 6666666666666666666666666666666666666666666 3 66666 3 3 555 2222222 2 777777 55 88888 999999 2 2 77 2 2222 66666 5 1 1 2 33 22222222222222 2 666666 22 33333333333333333333333 3 55 000 88 3 555 3333 555 0 3 3 3 5 3 888888 3 3 555 44444444444 88 3
lowQualScore : .. . . . . . . . .. . . . . . . . . . .. ... ... . .... .. . ... .. . ..... . .... ....... . . . . . . ... . . .. . ...... . .................... . . ....... . . . . . . . . . . . . . ... .. . .. ... ..... . . . ... .. . . . . .. .. ... . . ...... . . . .. ....... . . .... . .. . .... . ... ........................ . .. . . .. . . ... .. . .. . . . . . . . . . . . . . . . . .. . .. . . . .. ... .. . ............................ . . . . . . . . . . . . ... . . .. ... ..... ..... .. ... ........................................... . ..... . . ... ....... . ...... .. ..... ...... . . .. . .... ..... . . . . .. .............. . ...... .. ....................... . .. ... .. . ... .... ... . . . . . . ...... . . ... ........... .. .
lowQualScore : 00 7 3 3 3 3 3 7 33 3 3 7 0 0 0 5 0 2 00 000 555 2 2222 88 5 000 22 0 88888 5 5555 5555555 0 0 0 0 0 0 888 0 0 88 0 222222 0 44444444444444444444 8 0 0000000 0 8 0 4 0 8 0 4 8 0 4 8 8 444 00 0 00 666 88888 0 0 0 222 88 7 7 7 5 00 55 000 7 1 444444 7 7 7 99 7777777 7 1 6666 0 99 0 1111 0 222 444444444444444444444444 0 99 0 0 99 9 4 000 11 9 11 4 0 2 4 9 4 1 4 9 4 4 4 0 0 8 7 66 3 66 3 6 3 66 888 66 8 0000000000000000000000000000 6 6 6 6 6 6 3 6 0 7 3 0 555 0 8 99 444 55555 11111 00 444 2222222222222222222222222222222222222222222 1 77777 1 1 666 1111111 9 444444 99 00000 555555 7 7 33 7 0000 77777 0 6 6 5 44 66666666666666 5 111111 99 33333333333333333333333 6 00 000 66 3 888 8888 444 2 1 1 1 7 1 888888 1 1 444 66666666666 55 3
consensus : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( family-3843 ) : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|1 : CCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTTA-TGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTGATA-TGGA---CCATTCAA-GAAGA----CAT--CA-T-A-ACTCCCAAAAAAA-TTGTAA-GA---G-CCGCACGC-GACACA----CTACAGAATACA-C-----AGGAAT-ATAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCACCACTGAT-G--CAGATAC-ACT--TATCCGAACATTAAA----C----AA--T------ACAGC-GATCTCCA-------GAAGATA-TTACAGAATCATT-CCACCAGACATGA-TTAAAATAACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAA-TCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAG-CGAGAC---ACAACGAGGAACG-C------CGAA-TTCTGA-T-AATAAT--TTTTAA-ATAAACACA-GGACAA----ATGAAAAACCCAAA--TA-CAT----GTAAA-CTTACA--C--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTT-GATACTTTCTTTTCTC--GGACGAGTGGATA--GTT-TAT-AGC-GGG-ATCT-ATACCC-T-CAC-GTCTC-GTGCGAAACAGATT-CT--CCG-TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AAC---AGAAG--TGCAAAC--TTT-A-T-GTCGCACT-TG--AAACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATCCTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTA-T---TAG-TGC----------ATAC--ACT-A--TGA--A---CTC-----A------------------------CA--AA------TTGAT-A----CC-G-CG--CAT-AA-------A-TTATGGAACTT----ATTGAC-T--GTTAATT----TA-A-GTT--GATA----A-----TA-TATATTTATGT-CCA--T----------T---TAA------C--AT-----------TA----------T
gi|1 : ------C--AT-----------TA----------TCCA--CTTT---GTTTAA-TGA---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCCagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|10 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc---ATTC--AC--A--CGA--A---CTC-----A------------------------C---AT------ATCAT-A----CC-T-CA--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTCAA-T----TA-A-ATT--G-TA----A--------------TATGT-CCA--T----------T---T-A------C--AT-----------TA----------T
gi|10 : ------C--AT-----------TA----------TC-A--CTAT---GTTAAAAT-A---GCA--A-C---GCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCCagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|11 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgcTCTT-GT-CTGAACAAATTTCA--CCT-TATC--ATTAA-GTTTTACTTGT-GAACATTC--AAC---AGAAG--TACTACA--AT--A-C-GTC-T-CA-CCT-AA--ATT-GTC-ACAACT-GAAAA-CA-TTA-C-AATCCTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAA-T---TAG-TGCATTATAA---A-----AT--A--CAA--A---TTC-----A------------------------T----A------TTTAT-A----CT-G-TG--TATAAA-------A-TTATAGAAC-T----AAGGGC-T--AATAA-A----TT-A-ATT--G-TAAT--A-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--GT-----------GA----------T
gi|12 : aAAACCAGGAATAATTAAATTAAAACCCCAAA--TA-TAC--G-GAGAA-C-TACA--T--GTAAA-TTTA-CA--A--GAGAGT--GTCATCA-GTG--CTGAAGA-GAAACA-T-GATAATTTCTTTTCTT--GGACAAGTGG-TA--G-T-aaacaatg
gi|12 : -TAA-AGCAGGG-AC-----A-C--T-CAC-ATCTC-GT-CTGAACAAATTTCA--CCG-TATC--TTCAA-GTTTTACTTGT-GAACTTTC--AACAGAAGAAG--TACTACA--A-T-A-T-GTC-ctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|13 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaa-A----TA-A-CTT--G-TA----A-----TA-TATATTC-TGA-CCA--T----------T---T-A------C--A
gi|13 : ------C--AT-----------TA----------TT-TTTCTTT---GTTTA--T-ACATGTAGCAAC---GCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCCatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgccattatttttctttgtttatacatgtagcaacgctccaattctatgtatatttatagaaatcgctcccggcccgaaattcttccttccagtagtgaaattatcct
gi|14 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCt
gi|15 : agagaacaagtaatataaggtaaacatttttcattctgcaatctgccactgttttaagtcgccattcaactcgtctttgttatatagcaacgagcatccgtgcttcctcttttgttgacgatagtcttgtattaaagc-TATATTGATGC-CCA--T----------C---T-G------C--ATGTGTAAGTCGCCA----------TT-A--TTTTTCTGTTTA--T-A---GCA--A-C---GCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACCa
gi|16 : tgtaaaatcaaaactctgtatactatATT-CG--CCA-TATC--TTCAA-GTTTTACTTGT-GAACTTTA--AAC---AAAAG--TTCTACC--AT--G-C-GTCACAC--CC--AA--ATT-GTC-ACAATT-GAAAA-CG-TCG-C-AATCCTCACATAATA-GAACAt
gi|17 : a-A---GCA--A-C---GCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCC
gi|19 : C---GCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|2 : TCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAA-CTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGA-TCGAAGAAA-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGTTA-CCTCCCAAAAAAAATCGTAA-TA---G-CCGCACGCCAACACA---GCTACAGAATACA-C-----AGGAAT-ACAATACA-CAGCTGAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGATTG--CAGATAC-A-T--TATCCGAA-ATTAAA----C----AA--T------ACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CATT-CCACAGGACATGA-TTAAA-TAACAACTAAA-T-GCTAA-GGAAATTTA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CAAGAC---AC-ACGAGGAACGAC------CGAATTCTTGA-T-G--AAT--TT---A-ATAAAACCAGGAACAA----ATGAAAACCCCAA---TA-CAT--G-GTAAA-C-TACA--C--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACAAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-ATCTC-GT-CTGAACAGATT-CG--CCA-TATC--TCCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TGCAACTTAATTTA-C-GTCATATA-CCGTAAC-ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTA-T---TAG-TGCATTAAAA---ATAC--AC--A--CAA--A---CTC-----A------------------------C---AA------ATTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTTAA-T----TA-A-ATT--G-TG----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCATTAAT---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|20 : taa-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|21 : tattatcttcaaaTAAA-------A-TTATGGAAC-T----ATGGAC-C--ATTAA-A----TA-A-ATT--G-TA----A-----Ta
gi|3 : actTCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATC--ACCGAAACTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC-AA-GCTT-CAAGAACTCA-CAGAAGGAT-TAGTGA-AATGGA---CCATTCAAAGAAGA----TATATCAGT-AACCTCCCAAAAAAA-TCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAACAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGAC---AATCACCTT-ATTGAT-G--GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAGATAAT------ACA-C-GATCTT-----------AAATAGTCACAGAA-TATTACCACTGGTC-TCA-TTTAATTAACA-CTAAA-CAGGAAA-CAAAATTGA-GTCAC--AATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TC-ATCAATGAACAGT----TA----AGAC---AC-ACG-GGAACGAC------CGAATGTCTGA-T-G--AAT-------A-AGTAAACCAGGGACAA----ATTAAAACCCCAAA--TA-C----G-GGAAA----------------A-TCTA-CT--A--AAGAGT--GT-ACCA-GCAC-C-GAAAA-AACATG-T-GATGCTTTCTTTTCT---GGACGAGTGA-TA--G-T-TTT-AGCGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTGAACA-ATT-CGCCCCGTTATC--TTCAA----------GT-GAATTTTCCAAAC---AGAAG--TACTACC--ATA-AGC-GTT-CACACCC--AAT-ATCGGTC-AACATT-GGAAACCG-TCA-C-AACCCTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTA-TAA-TAG-TGCATT-TAA---ATAA--AC-----TG---A---CTCTTTTTAGCC---------------------C---AG------TTTTT-AAACGCC-T-CG----TAAA-------A-TTATGAAACGT----ATGGAT-C--ATTAG-A----TATA-ACTTGG-TAC---A-----TATTATATTTCTGA-CCATTT----------T---T-A------C--AT-----------T
gi|4 : accACCC-AAATCTTTCAAGAACCTA-CGGAAGGAT-GAGTGA-A-TGGGGACCCATTTAAAGAAAAATTATAT--CAGA-A-CCTCCCAAAAAAA--CACAA-TA---TTCCGTACTCCAATACA---ACCACAGAATATAGCCTA-CAGGAAT-ACAAGACA-CAGCTCAACAGGGACATGGCA-GAACC--AATCACCAC-ATTGAT-GGGCAGATTT-A-A--TATCCAAA-TTTAAAATTCC----GAAATGAAAACACAAC-GATCTTCA-------GAAG----TCACAGAA-TATTACCACAGGTCATCA-TTTAATTAACAGCTAAA-T-G------GAAAT--------------------GAAAT------------C--TACAA--T-CCGC-TC-ATCAATGAACAGT----TAG---AGAC---AC-ACGAGGAACGAT-------GAATTTCTGA-T-G--AAT--T----A-ATAAAACCAGGGACAA----ATTAAA-CCCCAAA--TAACAC--G-GAAAA-T-TAC------------------T--A--GAGAGT--GT-ACCA-GCA--C-GGAAA--ACATG-T-GATACTTTCTTTTCTT--GGACGAGTGG-TA--G-T-T-T-AGCGGGGGATCT-ATA-CCCT-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTAATTG--GAATTTTC--AAC-------G--TACTA-------------------A-CC--AT--A-C-GTC-ACAATT-GAAAA-CG-TCA-CAAATCCTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTA-TTAATAG-TTCATTA-AA---AT--------A--CGA--A---CTC-----ATTAAAATCATTATATTTTTTAGCCC---AT------TTTAT-A----AC-G-CT--CAT--A-------A-TTATGAAAC-T----ATGGAC-C--ATCAG-A----TA-A-CTT--G-TA----A-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--AT-----------GA----------Tgatagacatgatatatattat
gi|5 : AAAT------AAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCTCCACAGGACATGAATTAAAATAACAACTAAAAC-GCTAA-GGAAATTCAGTACAC--A-ATCGCCGGAAATGCAGCCGTATT-CAGTTCAAA-T-CCGC-TC-ATGCATGA-CA-TA-TTTAG--GAGACGAAAC-ACGAGGAACGGC------CGAATTT-TGA-TTG--AAT--TT---ACATAAA-CAAGGGACAA-----TGAAAACCCCGAAAGTA-CAT--G-GTAAA-C-TACAAAC--GTA---TTCA-CTTAA--GGCAGT--GT-ACCA-GCA--CCGAAGA-GACACG-T-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--G-T-TAT-AGCGGGG-AT-T-ATC-AC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TCC-A-GTTTAACTCGT-GAACTTTC--AAC---AGAAG--TGCAACT---TT-A----------------------C-GTC-ACAA-T-GAAAA-CA-TCACC-AAT-CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCA-T---TAG-T-C----------ATAC--AC--A--GGA--A---ACT-----A------------------------C---AA------ATTATAA----CC-G-TG--CATAAA-------ATTTATGAACT-T----ATTGAC-T--GTTAA-T----TT-A-ATT--G-T-----A-----TA-TATATGTATGT-C----T----------T---T-A------C---T-----------TA----------Tggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|5 : TGT-TAA--T----------C---C-G------C--AT-----------TA----------TC-A--CTTTT--GTTTA--T-A---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgtGAGAC---AC-ACGAGGAACGAC------CGAATGTCTGA-T-G--AAT-------A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GAAAATC-TAC-------TAAA---------------AAGT--GT-ACCA-GCAC-C-GAAAA-AACACG-T-GATACTTTCTTTACTC--GGACGAGTGA-TA--G-T-TTT-AGAGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTAAACAAATT-TG--CCG-TATC--TTCAA----------GT-GAACTTTC--AAC---AGAAG--AACTACC--A-T-A-A-GTCTCAC--CC--AA--ATC-GTA-ACAATA-GAAAC-CG-TCA-C-AATCCACTCATAATA-GAACATTCCAACATCC-CACGGACTACTCTA-TTAATAG-TGCATT-TAA---A-----AT--A--CGA--A---CTC-----ATTTTTTAGCC--------------C---GT------TTTAT-A----AC-G-CT--CATAAA-------A-TTATGAAAC-T----ATGGAT-C--ATTAG-A----TA-A-CTT--G-TA----A-----TA-TATATTTCTGA-CCA--T----------T---T-A------C--ATGTTAGA-----CA----------TG-A--TATA---ATTTA--T-T---GTA--AACCAAACTCTGTATACTA-T-CA-TA-TTT-
gi|6 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattaA-TAT-TTTATGC-CCA--TCTGCATGTTGT---T-AAGTTGCC--AT-----------TA----------TT-T--CTTT---GTTTA--T-A---GCA--A-C---GCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCCtatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatataatttattgtaaaccaaactctgtatactatcTT-CAGTACAAGATACCGCATC-TTCAATGAAC--TA-TTTAGGCGAGA----AC--CGAGGAACGACACCAGCCGAATCCTTGAAT-G--AATAATT---A-ATAACACCAAGGGAAA----ATGAAAACCCC--A--T--CACCTGTGTAAA-C-TACA--CCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCA-GCA--C-GAAAAGGACACG-GAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACG-TCTATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGT-CTGAA-AG-TT-CG---CG--ATC--TCCAAGGTTTTACCAAT-GAACTTTC---AC---AGAAAGCTGCAACC---TT-A-CAGTT-C-CA-ACGAAA--ATC-GTCAACAATTAGAAAA-AT-TCA-CAAATC--CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTA-T---TAGTTGCATTATAA---A-----AC--A--CGA--A---CTC-----A------------------------C---AA-------TTAT-A----GC-GCCG--C-CAAATAT----A-TT-TGGAAT-G----ATGGACTT--GTTAA-ACTTTTA-A-ATT--G-TA----T-----TA-T---TTTATtt
gi|7 : tatA------TTCAT-A----TT-T-CG--TATAAATAA----A-TTTTAGAAC-A----A---AC-T--ATGAT-A----GA-ATATT--T-TA----A-----TGCTATCTGCATGTGTTG--T----------TAAGT-A------CGCAT-----------T------------C-A--CTTT----TTAA--T-A---GCA----C---GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|8 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattatttt-GAAAA-GACACG----ATACTT-CTTTTCTCTTAGACGAATGG-TA--G-A-TAT-AGCGGGG-ATCT-ATA-CC-TTCAC-ATCTC-GT-CTGAACAAATT-CA--CCG-TATC--TTCAA-GTTTTACTCAT-GGATTTTC--AAC---AGAAG--TACAACC--AT--A-C-GTCGCAC--CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAATATTCCAACATCC-C-----TTA-TCTATT---TAG-TGCATTATAA---ATAT--ATGAA--CAAATA---TTT-----G------------------------T---AAGCCCGTTTTAT-A----CT-G-CG--CATAAAATTAATTA-TTATGTAAC-TAATAATGGAC-TTATTTAA-A----TG-A-ATT--G-TAATATA-----TA-TATATTTCTGT-CCA--T----------T---T-A------C--GT-----------GA----------T
gi|8 : A------TTTA--------C-G-TG---ATAGAC------A-TTATATAAT-T----A---AT-T--ATAAA-A----TA-A-ACTCTG-TA----AACAATCA-TAT-TTTATTC-TCA--T----------C---T-G------C--ATGTTGT------TAAGTTGCCATTTC-A--CTTT---GTTTA--T-A---GCC--AAC---GCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--agacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|9 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccACAAATT-CG--CCT-TATC--TTCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TACTACT--AT--A-C-GTCACAC--CC--AA--ATC-ATC-ACAACT-GAAAA-CA-TCA-C-AATCCTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCA-T---TAG-TGCATTATAATTTATACCGAC--ATTCAA--ACATCCC-----A------------------------CAGAAA------TTTCC-A----TTAG-TGATTATAAA-------A-TT-TATAAC-C----A--GA--C--ATTCA-------A-A-ATT----CC----A-----CA-TGAA---AT-T-CCA--T----------TAG-T-G------C--AT-----------TA----------TA-A--T-------TTTA--T-A---TCA--CAT---GCCACGAATTA-A-GATA-TA-TTT-A
blockSeqs : GA G . A C T C . A A C . A T G . A AA GAC A ATTA AT G TA AT A TCGG C CAAA TCCTAAC C T A G G A CGC . T GG A TATCG . ATTCCGAAATGAAAAC A A ACACATT A G A . A A A A A T A CA CT . TT GTA AAT G G T CA GA A A . G A GC GAA . ACCAGC T A T . AATT C TTAA T AG A CTGT A TC ACCGATAAACTTCAGCTAGG G TC C . C T G GA TT T AC . C A C A G C C C C T A A . A T CC T . G T . CA AGA GC T TTAATTTACGTCATATACCGTAAC G A A C . C A T A T T TAA T AT TTT TACCG GAA AT CAT ATTAAAATCATTATATTTTTTAGCCCATT A AACGC A C ATT ATTAATT T TAATA TT TTAT ACTTT T T TG . ATAT ACAAT T A A G TT CTGCATGTTGT . AGTTGC GC GTTGTTAAGTTGCCATT . TT TCT AA . CAT GCAA CAA T C T T G TCGCTC A C AAA TACAAATTATG TC A
blockSeqs : G . . . . . A . . . C . A . C . T A . A . . G AA T . TT C G GCCTAC . G . C . . C . . . T AT . ATTCCCGAGATAAT A . . A . C . A T T . T T G AC GA . TG TA AT C . A CA A . . . G A C . . . C . . . TT . . G . . G T C AAACGTATTCACTTAA C . . . C C . T . . . . . A . G . C . . . . . . . A T . . . . T . . . . T CATAAGCGTTCACACCCAAT . . . . . . A . . T . TAA . AA . TTC ATT . . ATTTTTTAGCCCGTT . C . . C TAT . GT AG TTG T . . CT . AT . C A C . . TAAG . . . GTGTAAGTCGCCA . . T . . . TTAA . . . . . . . . . . . TC .
blockSeqs : . . . T . T A . A . . G A . . G C A C . G . C . . . . . . T AA . CAAT A . . T . C . T A T . T A A T CT . TC GT AA G . T CA . . . . G A . . . . C . . . TT . . T . . G G C ATGTAAATTTACAA G . . . . . . T . . . . . T . G . C . . . . . . . G . . . . . T . . . . T CTTACAGTTCCAACGAAA . . . . . . . . . C . AA . AT . TAC A . . TTTTTAGCCCAGT . C . . T TAA . T TT TG A . . . . C . . A A . . TAG . . . GTTAGACA . . . . . . AA . . . . . . . . . . . . .
blockSeqs : . . . . . T . . A A . A . . T . . . . . . . . C . . . . . . . . . . C . . . T . . T . . G A T ACATAAATTCACTA G . . . . . . T . . . . . A . G . C . . . . . . . G . . . . . C . . . . A AATACGTCTCACCTAA . . . . . . . . . C . . . AT . TAA A . . GTAAGCCCGTT . C . . C C . T TG TA A . . . . . . . A A . . T . . . TA . . . . . . AA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . G . . G T C ATCTACTA C . . . . . . T . . . . . T . G . C . . . . . . . G . . . . . T . . . . T CATGCGTCACACCCAA . . . . . . . . . T . . . AT . TAC A . . ACAGAAAT . A . . C . . T TG TG T . . . . . . . A C . . T . . . TA . . . . . . CA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . G A C TAAA A . . . . . . T . . . . . A . G . C . . . . . . . A . . . . . C . . . . T CATAAGTCTCACCCAA . . . . . . . . . C . . . T . TAT A . . ACATA . C . . C . . T TG CA A . . . . . . . A C . . T . . . TA . . . . . . A . . . . . . . . . . . . .
blockSeqs : . G . . G T . TA C . . . . . . T . . . . . A . G . . . . . . . . . G . . . . . A . . . . A CATACGTCGCACCCAA . . . . . . . . . T . . . A . T A . . ACAAA . A . . C . . T TT CA A . . . . . . . A A . . C . . . GA . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . . C . . . . T TATACGTCACACCCAA . . . . . . . . . . . . . T . . A . . ACAAA . G . . C . . T TG CA A . . . . . . . A C . . T . . . TA . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . C . . . . A ACCAT . . . . . . . . . . . . . . . . A . . ATAT . T . . T . . T TG TG T . . . . . . . C A . . T . . . TA . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A TTTA . . . . . . . . . . . . . ACAA . C . . C . . G TG CA A . . . . . . . A A . . T . . . GA . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . T . . . . . A . TA A . . . . . . . A A . . T . . . TA . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . TA A . . . . . . . . C . . C . . . TA . . . . . . . . . . . .
blockSeqs : . . C . CA A . . . . . . . . A . . T . . . TA .
blockSeqs : . . . . . . . . . A . . T . . . GA
blockSeqs : . . . . . C . . . TA
blockSeqs : . . T
blockSeqs : . .
blockSeqs : . .
blockSeqCons : C** A**** CA* A* ** ** TT***** G*** C** ** T** ** CATACGTCACACCCAA************ AT A**** ACANN************************************** T***** A***** **
originalCons : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACAC--A-TCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-CGAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACC--ATT-A-C-GTC-CACA-CC--AA--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--CGA--A---CTC-----A------------------------C---AA------TTTAT-A----CC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
finalCons : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTTA-TGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTGA-A-TGGA---CCATTCAAAGAAGA----CAT--CAGT-A-CCTCCCAAAAAAA-TCGCAA-TA---G-CCGCACGCCGACACA---ACCACAGAATACA-CCTA-CAGGAAT-ACAANACA-CAGCTNAACAGG-ACACGGCA-GAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAAC--GCTAA-GGAAATTCA-TACACA----CCGCCCGAAATGCA-CCGTATTCA-GTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG--GAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AATTT-----A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CACG---GNAAAC--TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACGT--GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TACTACCATACGTCACACCCAA------------ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--ACA----CGA--A---CTCACANN--------------------------------------TTAT-A----CC-G-CG--CATAAA-------A-TTATGGAACT-----ATGGAC-C--GTTAAA-----TA-A-ATT--G-TA----A-----TA-TATATTTATGT-CCA--T----------T---T-A------C--AT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT
Alignments
lowQualScore : 22 1 1 1 11 1 11 1 1 11 111 111 2222222 2 11 1 22222 111 4444444 1 1 1 1 1 1 11 222222 1 55555555555555555555 2222222 1 111 33 11 1111 11 111 111111 2222222 1111 2222222 11 111 111 2222222222222222222 1111111111111 5555555555555555555555555555555 1111111 111111 1111 1111111111 22222222222 1111111111 111 2222 11111111111
lowQualScore : 00 0 3 3 7 3 7 3 88 7 3 6 33 0 2 0 0 11 111 777 3 6666666 2 0 33 0 33333 2 777 7 3333333 0 1 0 1 0 0 2 8 0 0 33 1 222222 0 11111111111111111111 0 8 6666666 1 0 8 1 8 5 1 1 0 8 1 8 0 222 66 8 44 999 8 88 5 8 1 888 55 6 6 6 2222 44 000 5 0 666666 1 5 5 77 0000000 5 0 0000 1 5 66 88 8888 1 555 4444444 0 666666 77777 1 66 5 5 66 8 4 888 66 8 66 4 4 2 4 2 4 1 4 8 4 4 4 4 4 1 6 44 3 44 3 1 3 44 555 44 888 666666 6666 3 777 3 44 333 3 3 3 3 3 3 7 3 4 0 5 4 999 4 0 88 666 0000000000000000000 2222222222222 6666666666666666666666666666666 3 3 3 3 55 8888888 3 0 666666 22 77777 000000 2 77 2 2222 77777 2 0 2 33 1111111111 33 2 666666 33333333333 0000000000 3 55 000 88 3 555 3333 555 0 3 3 3 5 3 888888 3 3 555 44444444444 88 3
lowQualScore : .. . . . . . . . .. . . . .. . . . . .. ... ... . ....... . . .. . ..... . ... . ....... . . . . . . . . . . .. . ...... . .................... . . ....... . . . . . . . . . . . . . ... .. . .. ... . .. . . . ... .. . . . .... .. ... . . ...... . . . .. ....... . . .... . . .. .. .... . ... ....... . ...... ..... . .. . . .. . . ... .. . .. . . . . . . . . . . . . . . . . .. . .. . . . .. ... .. ... ...... .... . ... . .. ... . . . . . . . . . . . . ... . . .. ... ................... ............. ............................... . . . . .. ....... . . ...... .. ..... ...... . .. . .... ..... . . . .. .......... .. . ...... ........... .......... . .. ... .. . ... .... ... . . . . . . ...... . . ... ........... .. .
lowQualScore : 00 7 3 3 3 3 3 7 33 3 3 7 22 0 5 0 2 00 000 555 2 0000000 5 0 22 0 88888 5 555 0 5555555 0 0 0 0 0 0 5 8 0 0 88 0 222222 0 44444444444444444444 8 0 0000000 0 8 0 4 0 8 0 4 8 0 4 8 8 444 00 0 00 666 0 00 0 0 0 222 88 7 7 7 9999 44 000 7 1 444444 7 7 7 99 7777777 7 1 6666 0 1 99 22 1111 0 111 8888888 1 222222 88888 0 99 0 0 99 9 4 000 11 9 11 4 0 2 4 9 4 1 4 9 4 4 4 0 0 8 7 66 3 66 3 6 3 66 888 66 555 222222 8888 3 444 6 88 666 6 6 6 6 6 6 3 6 0 7 3 0 555 0 8 99 444 2222222222222222222 1111111111111 2222222222222222222222222222222 6 6 6 6 00 5555555 1 7 777777 11 77777 999999 9 99 9 9999 11111 7 7 3 77 7777777777 77 7 444444 88888888888 3333333333 6 00 000 66 3 888 8888 444 2 1 1 1 7 1 888888 1 1 444 66666666666 55 3
consensus : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGT-ACCTCCCAAAAAAA-TCGC-AATA---G-CCGCACGCCGACAC---AACCACAGAATACA-CCT-ACAGGAAT-ACAANAC-ACAGCTNAACAGG-ACACGGC-AGAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACA-CAATCCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-GAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TAC-T-AC-CA---TA--C-G-TC--GC-ACC-CAA---ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--C------GAA---C-T-------CA------------------------C---ANNTT-AT-ACC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-AATT--G-TA----A-----TA-TATATTTATGTCCA--T----------T--T-A------CAT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
Reference ( family-3843 ) : NNNTCCACATTG-TTACCGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAAACTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAACCGA-CGGAAGGAN-TAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGT-ACCTCCCAAAAAAA-TCGC-AATA---G-CCGCACGCCGACAC---AACCACAGAATACA-CCT-ACAGGAAT-ACAANAC-ACAGCTNAACAGG-ACACGGC-AGAACCGCAGCCACCAC-ACTGAT-G--CAGATNC-A-T--TATCCGAA-ATTAAAATTCC----AAAAT------ACAAC-GATCTCCA-------GAAGATA-TCACAGAA-CATTACCACAGGACATGA-TTAAANTAACAACTAAA-C-GCTAA-GGAAATTCA-TACA-CA--CCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAG-GAGAC---AC-ACGAGGAACGAC------CGAATTTCTGA-T-G--AAT--TT---A-ATAAAACCAGGGACAA----ATNAAAACCCCAAA--TA-CAC--G-GNAAA-C-TACA--C--GTAAA-TTCA-CT--A--GGNAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACGAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTACTCGT-GAACTTTC--AAC---AGAAG--TAC-T-AC-CA---TA--C-G-TC--AC-ACC-CAA---ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAACATTCCAACATCC-CACGGACCATTCTA-T---TAG-TGCATTATAA---ATAC--AC--A--C------GAA---C-T-------CA------------------------C---ANNTT-AT-ACC-G-CG--CATAAA-------A-TTATGGAAC-T----ATGGAC-C--GTTAA-A----TA-AATT--G-TA----A-----TA-TATATTTATGTCCA--T----------T--T-A------CAT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCA--AAC---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|1 : CCACATT--TTACTGGAAC-CCCTGGCATACC-TCGTGGTATTCACTGTGTACGAAAACTGCGCTTAAACTTT-ATGGCCACCCCC-TTACCTTAAGGCTT-CAAGAATCGATCGGAAAGAAATAGTG-ATATGGA---CCATTCAA-GAAG--A----CATCA-T-AACTCCCAAAAAAA-TTGT-AAGA---G-CCGCACGC-GACAC---A-CTACAGAATACA-C-----AGGAAT-ATAATAC-ACAGCTGAACAGG-ACACGGC-AGAACCGCAGCCACCACCACTGAT-G--CAGATAC-ACT--TATCCGAACATTAAA----C----AA--T------ACAGC-GATCTCCA-------GAAGATA-TTACAGAATCATT-CCACCAGACATGA-TTAAAATAACAACTAAA-C-GCTAAGGGAAATTCA-TACACCAATCCGCCCGAAATGCA-CCGTATTCCAGTACAA--T-CCAC-TCAATCAATTAACAGTAGTTTAGCGAGAC---ACAACGAGGAACG-C------CGAA-TTCTGA-T-AATAAT--TTTTAA-ATAAACACA-GGACAA----ATGAAAAACCCAAA--TA-CAT----GTAAA-CTTACA--C--GTAAA-TTCA-CT--A--GGCAGT--GT-ACCAGGCAGCC-GAAGA-GACACGTT-GATACTTTCTTTTCTC--GGACGAGTGGATA--GTT-TAT-AGC-GGG-ATCT-ATACCC-T-CAC-GTCTC-GTGCGAAACAGATT-CT--CCG-TATTCGTCCAA-GTTTTACTCGTGGAACTTTC--AAC---AGAAG--TGCAA-AC-TT---TA--T-G-TC--GC-ACT-TGAAACATC-GTC-ACAATT-GAAAA-CATTCA-C-AATCCTCACACAATA-GAACATTGCACCTTCC-CACGAACCATTCTA-T---TAG-TGC----------ATAC--ACT-A--T------GAA---C-T-------CA------------------------C---AAATTGAT-ACC-G-CG--CAT-AA-------A-TTATGGAACTT----ATTGAC-T--GTTAATT----TA-AGTT--GATA----A-----TA-TATATTTATGTCCA--T----------T--TAA------CAT-----------TA----------T
gi|1 : ------CAT-----------TA----------TCCA--CTTT---GTTTAA-TGA---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-TTTAAT-AGAAA------CA-TGCA-ACC--AA---TTCT-----------TACCT--CAGGA--G-GATTTATCCCagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgccattatccactttgtttaatgagcaacgctccggattctatgtatatttaatagaaacatgcaaccaattcttacctcaggaggatttatccc
gi|10 : ccacattttactggaacccctggcatacctcgtggtattcactgtgtacgaaaactgcgcttaaactttatggccacccccttaccttaaggcttcaagaatcgatcggaaagaaatagtgatatggaccattcaagaagacatcataactcccaaaaaaattgtaagagccgcacgcgacacactacagaatacacaggaatataatacacagctgaacaggacacggcagaaccgcagccaccaccactgatgcagatacacttatccgaacattaaacaatacagcgatctccagaagatattacagaatcattccaccagacatgattaaaataacaactaaacgctaagggaaattcatacaccaatccgcccgaaatgcaccgtattccagtacaatccactcaatcaattaacagtagtttagcgagacacaacgaggaacgccgaattctgataataatttttaaataaacacaggacaaatgaaaaacccaaatacatgtaaacttacacgtaaattcactaggcagtgtaccaggcagccgaagagacacgttgatactttcttttctcggacgagtggatagtttatagcgggatctataccctcacgtctcgtgcgaaacagattctccgtattcgtccaagttttactcgtggaactttcaacagaagtgcaaactttatgtcgcacttgaaacatcgtcacaattgaaaacattcacaatcctcacacaatagaacattgcaccttcccacgaaccattctattagtgcatacactatgaactcacaaattgataccgcgcataaattatggaacttattgactgttaatttaagttgataatatatatttatgtccatttaacattatagataattataataatgaacaagctatgtaaacaatcatattttaattttcattctcatctgccatgcttgttattcgc---ATTC--AC--A--C------GAA---C-T-------CA------------------------C---ATATC-AT-ACC-T-CA--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTCAA-T----TA-AATT--G-TA----A--------------TATGTCCA--T----------T--T-A------CAT-----------TA----------T
gi|10 : ------CAT-----------TA----------TC-A--CTAT---GTTAAAAT-A---GCA--A-C---GCTCTGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCTTACAAATTATGTACCT--CAGGAGTG-AATTTATCCCagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgccattatcactatgttaaaatagcaacgctctggattctatgtatatttatagaaacatgcaaccgaaattcttacaaattatgtacctcaggagtgaatttatccc
gi|11 : attcacacgaactcacatatcatacctcacataaaattatggaactattgactgtcaattaaattgtaatatgtccatttacattatagataatatatagaacaaactatgtaaacaatcatattttaattttattctcatctgcatgttgttaagtcgcTCTT-GT-CTGAACAAATTTCA--CCT-TATC--ATTAA-GTTTTACTTGT-GAACATTC--AAC---AGAAG--TAC-T-AC-AA---TA--C-G-TC--TC-ACC-TAA---ATT-GTC-ACAACT-GAAAA-CA-TTA-C-AATCCTTACATCACG-GAACATTTCAGCAACC-CACAAACCATTCAA-T---TAG-TGCATTATAA---A-----AT--A--C------AAA---T-T-------CA------------------------T---A-TTT-AT-ACT-G-TG--TATAAA-------A-TTATAGAAC-T----AAGGGC-T--AATAA-A----TT-AATT--G-TAAT--A-----TA-TATATTTCTGTCCA--T----------T--T-A------CGT-----------GA----------T
gi|12 : aAAACCAGGAATAATTAAATTAAAACCCCAAA--TA-TAC--G-GAGAA-C-TACA--T--GTAAA-TTTA-CA--A--GAGAGT--GTCATCA-GTG--CTGAAGA-GAAACA-T-GATAATTTCTTTTCTT--GGACAAGTGG-TA--G-T-aaacaatg
gi|12 : -TAA-AGCAGGG-AC-----A-C--T-CAC-ATCTC-GT-CTGAACAAATTTCA--CCG-TATC--TTCAA-GTTTTACTTGT-GAACTTTC--AACAGAAGAAG--TAC-T-AC-AA---TA--T-G-TC--ctaagtcataccaatgagatgtttctcaagattcaataaacaataaagcagggacactcacatctcgtctgaacaaatttcaccgtatcttcaagttttacttgtgaactttcaacagaagaagtactacaatatgtc
gi|13 : aaaccaggaataattaaattaaaaccccaaatatacggagaactacatgtaaatttacaagagagtgtcatcagtgctgaagagaaacatgataatttcttttcttggacaagtggtagtctaagtcataccaatgagatgtttctcaagattcaataaacaa-A----TA-ACTT--G-TA----A-----TA-TATATTC-TGACCA--T----------T--T-A------CA
gi|13 : ------CAT-----------TA----------TT-TTTCTTT---GTTTA--T-ACATGTAGCAAC---GCTCCA-ATTCTA-TGTA-TA-TTT-AT-AGAAATCGCTCCC-GGC---CCGAAA---TTCT-----------T-CCTTCCAGTAGTG-AAATTATCCatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgccattatttttctttgtttatacatgtagcaacgctccaattctatgtatatttatagaaatcgctcccggcccgaaattcttccttccagtagtgaaattatcct
gi|14 : ataacttgtaatatatattctgaccatttacaatgtagacatgatataatttattgtaaaacaaactctgttatactatcatatttttaagcccatcgcatgttgttaagtcgcT-AGAAA------CA--GCA-ACCAAAA---TTCT-----------TACCT--GAGGAGTG-AATTT-TCCCt
gi|15 : agagaacaagtaatataaggtaaacatttttcattctgcaatctgccactgttttaagtcgccattcaactcgtctttgttatatagcaacgagcatccgtgcttcctcttttgttgacgatagtcttgtattaaagc-TATATTGATGCCCA--T----------C--T-G------CATGTGTAAGTCGCCA----------TT-A--TTTTTCTGTTTA--T-A---GCA--A-C---GCTCCAGATTCTATTGTA-TATTTT-ATGACATA------CG-TGCGCGCCAAAA---TTCC-----------TTCCTTCTAGAAGTGAAATTTACCa
gi|16 : tgtaaaatcaaaactctgtatactatATT-CG--CCA-TATC--TTCAA-GTTTTACTTGT-GAACTTTA--AAC---AAAAG--TTC-T-AC-CA---TG--C-G-TC--AC-ACC-CAA---ATT-GTC-ACAATT-GAAAA-CG-TCG-C-AATCCTCACATAATA-GAACAt
gi|17 : a-A---GCA--A-C---GCTCCATATTCTA-TGTA-TA-TTT-AC-AGAAA------CG-TGCA-TCCAAAA---TTCT---------------T--CAGTAGTG-AAATTATCC
gi|19 : C---GCTCCGG-TTCTA-TGTACTA-TTTTAT-AGAAA------CA-T----ACCCAAA---TTCT-----------TATC-----GGAGTG-GATTT
gi|2 : TCCACATTG-TTACTGGGAC-CCCTG-CATACC-TCGTGGTATCCACCGT--ACCGAA-CTGCGCTGTAACTTT-ATGGCCACCCCCCTTACCC-AAAGCTT-CAAGAGTCGA-TCGAAGAAA-TAGTG-A-ATGGA---CCATTCAAAGAAG--A----CATCAGTTACCTCCCAAAAAAAATCGT-AATA---G-CCGCACGCCAACAC---AGCTACAGAATACA-C-----AGGAAT-ACAATAC-ACAGCTGAACAGG-ACACGGC-AGAACCGCAGCCACCAC-ACTGATTG--CAGATAC-A-T--TATCCGAA-ATTAAA----C----AA--T------ACAAC-GATCTCCA-------GAAGATA-TAATAGAA-CATT-CCACAGGACATGA-TTAAA-TAACAACTAAA-T-GCTAA-GGAAATTTA-TACA-CAT-CCGCCCGAAATGCA-CCGTATT-CAGTACAA--T-CCGC-TC-ATCAATGAACAGTA-TTTAGCAAGAC---AC-ACGAGGAACGAC------CGAATTCTTGA-T-G--AAT--TT---A-ATAAAACCAGGAACAA----ATGAAAACCCC-AA--TA-CAT--G-GTAAA-C-TACA--C--ATAAA-TTCA-CT--A--GGCAGT--GT-ACCA-GCA--C-GAAGA-GACACG-T-GATACTTTCTTTTCTC--GGACAAGTGG-TA--G-T-TAT-AGCGGGG-ATCT-ATA-CC-T-CAC-ATCTC-GT-CTGAACAGATT-CG--CCA-TATC--TCCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TGC-A-ACTTAATTTA--C-G-TCATAT-ACCGTAAC--ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCATACAATA-GAACATTCCAACTTCC-CACGGACCATTCTA-T---TAG-TGCATTAAAA---ATAC--AC--A--C------AAA---C-T-------CA------------------------C---AAATT-AT-ACC-G-CG--CATAAA-------A-TTATGGAAC-T----ATTGAC-T--GTTAA-T----TA-AATT--G-TG----A-----TA-TATATTTATGTCCA--T----------T--T-A------CAT-----------TA----------TC-A--CTTT---GTTTA--T-A---GCATTAAT---GCTCCGGATTCTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCCtc
gi|20 : taa-AT-AGAAA------CA-TGCA-ACCGAAA---TTCT-----------TACCT--CAGGAGTG-AATTTATCCC
gi|21 : tattatcttcaaaTAAA-------A-TTATGGAAC-T----ATGGAC-C--ATTAA-A----TA-AATT--G-TA----A-----Ta
gi|3 : actTCCACATTGATTTCCGGGACGCCCTG-C-TACCCTCTTGGTA-CCACATC--ACCGAAACTGCGCTGTAACTTTAATGGCCACCCCCCTTACCC--AAGCTT-CAAGAACTCA-CAGAAGGAT-TAGTGAA-ATGGA---CCATTCAAAGAAGATA----TATCAGTAACCTCCCAAAAAAA-TCGCAAATATCGG-CAGCGTGCCGATACACAAACCACAGAATATATCCTAACAGATATCACAAGGCAACAGCTCAACAGG-ACACGGCAAGGA---CAATCACCTT-ATTGAT-G--GAGATTCTA-TCGTATCCAAA-ATTAAAATTCCCGAGATAAT------AC-AC-GATCTT-----------AAATAGTCACAGAA-TATTACCACTGGTC-TCA-TTTAATTAAC-ACTAAA-CAGGAAA-CAAAATTGA-GTCA-CAATCTGCCCGTAAGCCA-CCGAATT----TACAA--T-CCGT-TC-ATCAATGAACAG----TTA---AGAC---AC-ACG-GGAACGAC------CGAATGTCTGA-T-G--AA----T---A-AGTAAACCAGGGACAA----ATTAAAACCCCAAA--T---AC--G-GGA----------------AAA-TCTA-CT--A--AAGAGT--GT-ACCA-GCAC-C-GAAAA-AACATG-T-GATGCTTTCTTTTCT---GGACGAGTGA-TA--G-T-TTT-AGCGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTGAACA-ATT-CGCCCCGTTATC--TTCAA----------GT-GAATTTTCCAAAC---AGAAG--TAC-T-AC-CA---TAAGC-GTTC--AC-ACC-CAAT--ATCGGTC-AACATT-GGAAACCG-TCA-C-AACCCTCACATAATA-GAA-ATTCCAACATCC-CACGGACTACTCTA-TAA-TAG-TGCATT-TAA---ATAA--ACTGA--CTCTTTTTAG---C-C-------CA------------------------G---TTTTT-AA-ACG-C-CT--CGTAAA-------A-TTATGAAACGT----ATGGAT-C--ATTAG-A----TATAACTTGG-TAC---A-----TATTATATTTCTGACCATTT----------T--T-A------CAT-----------T
gi|4 : accACCC-AAATCTTTCAAGAACCTA-CGGAAGGAT-GAGTG-A-ATGGGGACCCATTTAAAGAAA--AATTATATCAGA-ACCTCCCAAAAAAA--CAC-AATA---TTCCGTACTCCAATAC---AACCACAGAATATAGCCT-ACAGGAAT-ACAAGAC-ACAGCTCAACAGGGACATGGC-AGAACC--AATCACCAC-ATTGAT-GGGCAGATTT-A-A--TATCCAAA-TTTAAAATTCC----GAAATGAAAACACAAC-GATCTTCA-------GAAG----TCACAGAA-TATTACCACAGGTCATCA-TTTAATTAACAGCTAAA-T-G------GAAAT-------------------GAAAT------------C--TACAA--T-CCGC-TC-ATCAATGAACAGT----TAG--AGAC---AC-ACGAGGAACGAT-------GAATTTCTGA-T-G--AAT--T----A-ATAAAACCAGGGACAA----ATTAAA-CCCCAAA--TAACAC--G-GAAAA-T-TAC------------------T--A--GAGAGT--GT-ACCA-GCA--C-GGAAA--ACATG-T-GATACTTTCTTTTCTT--GGACGAGTGG-TA--G-T-T-T-AGCGGGGGATCT-ATA-CCCT-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TTCAA-GTTTTAATTG--GAATTTTC--AAC-------G--TAC-TAAC-CA---TA-------------------------C-GTC-ACAATT-GAAAA-CG-TCA-CAAATCCTCACATAATA-GAACATTCCAACAT-C-CACGGACTACTCTA-TTAATAG-TTCATTA-AA---AT--------A--C------GAA---C-T-------CATTAAAATCATTATATTTTTTAGCCC---ATTTT-AT-AAC-G-CT--CAT--A-------A-TTATGAAAC-T----ATGGAC-C--ATCAG-A----TA-ACTT--G-TA----A-----TA-TATATTTCTGTCCA--T----------T--T-A------CAT-----------GA----------Tgatagacatgatatatattat
gi|5 : AAAT------AAAACAGATCACCAACACATTGTAGATA-TTACAGAA-CATCTCCACAGGACATGAATTAAAATAACAACTAAAAC-GCTAA-GGAAATTCAGTACA-CAA-TCGCCGGAAATGCAGCCGTATT-CAGTTCAAA-T-CCGC-TC-ATGCATGA-CA-TA-TTTAG-GAGACGAAAC-ACGAGGAACGGC------CGAATTT-TGA-TTG--AAT--TT---ACATAAA-CAAGGGACAA-----TGAAAACCCCGAAAGTA-CAT--G-GTAAA-C-TACAAAC--GTA---TTCA-CTTAA--GGCAGT--GT-ACCA-GCA--CCGAAGA-GACACG-T-GATACTTTCTTT-CTC--G-ACGAGTGG-TA--G-T-TAT-AGCGGGG-AT-T-ATC-AC-T-CAC-GTCTC-GT-CTGAACAGATT-CG--CCG-TATC--TCCA--GTTTAACTCGT-GAACTTTC--AAC---AGAAG--TGC-A-AC-TT---TA--C-G-TC--AC-A----A-----------------T-GAAAA-CA-TCACC-AAT-CTCAAACAATA-G-ACATTTCCACTTCC-CACGGACCATTTCA-T---TAG-T-C----------ATAC--AC--A--G------GAA---A-C-------TA------------------------C---AAATT-ATAACC-G-TG--CATAAA-------ATTTATGAACT-T----ATTGAC-T--GTTAA-T----TT-AATT--G-T-----A-----TA-TATATGTATGTC----T----------T--T-A------C-T-----------TA----------Tggacataggatataattaattgtaaaacaaactctgtatacaatgatattttattgcccttgcatgttgttaagtcgccattatcactt
gi|5 : TGTTAA--T----------C--C-G------CAT-----------TA----------TC-A--CTTTT--GTTTA--T-A---GCA--A-C---GCTCCGGATTCTA-TGTA-TA-G---AT-AGGAA------CA-TGCA-ACCGAAA---TTTT-----------TACCT--CAGGAGTG-AATTTATCCagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgttgttaatccgcattatcacttttgtttatagcaacgctccggattctatgtatagataggaacatgcaaccgaaatttttacctcaggagtgaatttatcc
gi|6 : aaataaaacagatcaccaacacattgtagatattacagaacatctccacaggacatgaattaaaataacaactaaaacgctaaggaaattcagtacacaatcgccggaaatgcagccgtattcagttcaaatccgctcatgcatgacatatttaggagacgaaacacgaggaacggccgaattttgattgaatttacataaacaagggacaatgaaaaccccgaaagtacatggtaaactacaaacgtattcacttaaggcagtgtaccagcaccgaagagacacgtgatactttctttctcgacgagtggtagttatagcggggattatcactcacgtctcgtctgaacagattcgccgtatctccagtttaactcgtgaactttcaacagaagtgcaactttacgtcacaatgaaaacatcaccaatctcaaacaatagacatttccacttcccacggaccatttcattagtcatacacaggaaactacaaattataaccgtgcataaaatttatgaacttattgactgttaatttaattgtatatatatgtatgtctttacttatagataattatataatgacaagctatgtaaaacaatataattttaaattttattctcatctcatgtACAG-A-TT--A-GAGAC---AC-ACGAGGAACGAC------CGAATGTCTGA-T-G--AAT-------A-ATAAAACCAGGGACAA----ATTAAAACCCCAAA--TA-CAC--G-GAAAATC-TAC-------TAAA---------------AAGT--GT-ACCA-GCAC-C-GAAAA-AACACG-T-GATACTTTCTTTACTC--GGACGAGTGA-TA--G-T-TTT-AGAGGGG-ATCT-ATC-CC-T-CAC-ATCTC-GT-CTAAACAAATT-TG--CCG-TATC--TTCAA----------GT-GAACTTTC--AAC---AGAAG--AAC-T-AC-CA---TA--A-G-TC--TC-ACC-CAA---ATC-GTA-ACAATA-GAAAC-CG-TCA-C-AATCCACTCATAATA-GAACATTCCAACATCC-CACGGACTACTCTA-TTAATAG-TGCATT-TAA---A-----AT--A--C------GAA---C-T-------CATTTTTTAGCC--------------C---GTTTT-AT-AAC-G-CT--CATAAA-------A-TTATGAAAC-T----ATGGAT-C--ATTAG-A----TA-ACTT--G-TA----A-----TA-TATATTTCTGACCA--T----------T--T-A------CATGTTAGA-----CA----------TG-A--TATA---ATTTA--T-T---GTA--AACCAAACTCTGTATACTA-T-CA-TA-TTT-
gi|6 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgA-TAT-TTTATGCCCA--TCTGCATGTTGT--T-AAGTTGCCAT-----------TA----------TT-T--CTTT---GTTTA--T-A---GCA--A-C---GCTCCAGATTCTA-TGTA-TA-TTT-AT-AAAAA------CG-TGCG-CCCGAAA---TTCT-----------TACTT--AAGTAGTG-AAATTATCCtatgcccatctgcatgttgttaagttgccattatttctttgtttatagcaacgctccagattctatgtatatttataaaaacgtgcgcccgaaattcttacttaagtagtgaaattatcctt
gi|7 : tttcatgaaattaaagtcattaaaaaacacaattgatacagcctatggatatcttttagaatttacatactgacagattagagacacacgaggaacgaccgaatgtctgatgaataataaaaccagggacaaattaaaaccccaaatacacggaaaatctactaaaaagtgtaccagcaccgaaaaaacacgtgatactttctttactcggacgagtgatagttttagaggggatctatccctcacatctcgtctaaacaaatttgccgtatcttcaagtgaactttcaacagaagaactaccataagtctcacccaaatcgtaacaatagaaaccgtcacaatccactcataatagaacattccaacatcccacggactactctattaatagtgcatttaaaatacgaactcattttttagcccgttttataacgctcataaaattatgaaactatggatcattagataacttgtaatatatatttctgaccatttacatgttagacatgatataatttattgtaaaccaaactctgtatactatcTT-CAGTACAAGATACCGCATC-TTCAATGAAC--TA-TTTAG-GCGAG---AA-CCGAGGAACGACACCAGCCGAATCCTTGAAT-G--AATAATT---A-ATAACACCAAGGGAAA----ATGAAAACCCC--A--T--CACCTGTGTAAA-C-TACA--CCGATAAACTTCAGCT--AGGGGCAGTTCTT-ACCA-GCA--C-GAAAAGGACACG-GAGATACTTTC-TTTCTC--GG-CGA-TGGTTAACG-TCTATCAGC-GGG-ATCTCATACCC-T-CACAGTCTCAGT-CTGAA-AG-TT-CG---CG--ATC--TCCAAGGTTTTACCAAT-GAACTTTC---AC---AGAAAGCTGC-A-AC-CT---TA--CAG-TT--CCAACG-AAA---ATC-GTCAACAATTAGAAAA-AT-TCA-CAAATC--CACTCAACATGAACATTTCAACATCCACAC-GACTA--CTA-T---TAGTTGCATTATAA---A-----AC--A--C------GAA---C-T-------CA------------------------C---A-ATT-AT-AGC-GCCG--C-CAAATAT----A-TT-TGGAAT-G----ATGGACTT--GTTAA-ACTTTTA-AATT--G-TA----T-----TA-T---TTTATtt
gi|7 : tat----------TC-A--CTTT----TTAA--T-A---GCA----C---GCTCCGGAT-CTA-TGTA-TT-TTC-AT-AGAAA------CAATGCA-ACCGAAAAAATT-T-----------TAC-T--CAGGAGTG-AATTTTTCCCtcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcattcactttttaatagcacgctccggatctatgtattttcatagaaacaatgcaaccgaaaaaattttactcaggagtgaatttttccc
gi|8 : tatttcagtacaagataccgcatcttcaatgaactatttaggcgagaaccgaggaacgacaccagccgaatccttgaatgaataattaataacaccaagggaaaatgaaaaccccatcacctgtgtaaactacaccgataaacttcagctaggggcagttcttaccagcacgaaaaggacacggagatactttctttctcggcgatggttaacgtctatcagcgggatctcataccctcacagtctcagtctgaaagttcgcgatctccaaggttttaccaatgaactttcacagaaagctgcaaccttacagttccaacgaaaatcgtcaacaattagaaaaattcacaaatccactcaacatgaacatttcaacatccacacgactactattagttgcattataaaacacgaactcacaattatagcgccgccaaatatatttggaatgatggacttgttaaacttttaaattgtattattttattcatatttcgtataaataaattttagaacaaactatgatagaatattttaatgctatctgcatgtgttgttaagtacgcat-GAAAA-GACACG----ATACTT-CTTTTCTCTTAGACGAATGG-TA--G-A-TAT-AGCGGGG-ATCT-ATA-CC-TTCAC-ATCTC-GT-CTGAACAAATT-CA--CCG-TATC--TTCAA-GTTTTACTCAT-GGATTTTC--AAC---AGAAG--TAC-A-AC-CA---TA--C-G-TC--GC-ACC-CAA---ATC-GTC-ACAATT-GAAAA-CG-TCA-C-AATCCTCACATAATA-GAATATTCCAACATCC-C-----TTA-TCTATT---TAG-TGCATTATAA---ATAT--ATGAA--C------AAA---TATTTGTAAGCC------------------------C---GTTTT-AT-ACT-G-CG--CATAAAATTAATTA-TTATGTAAC-TAATAATGGAC-TTATTTAA-A----TG-AATT--G-TAATATA-----TA-TATATTTCTGTCCA--T----------T--T-A------CGT-----------GA----------T
gi|8 : ATAGAC------A-TTATATAAT-T----A---AT-T--ATAAA-A----TA-AACTCTG-TA----AACAATCA-TAT-TTTATTCTCA--T----------C--T-G------CATGTTGT------TAAGTTGCCATTTC-A--CTTT---GTTTA--T-A---GCC--AAC---GCTCCCAATTTTA-TGTA-TA-TTT-AT-AGAAA------CA-TGCA-ACCG-AA---TTCT-----------TAACT--agacattatataattaattataaaataaactctgtaaacaatcatattttattctcatctgcatgttgttaagttgccatttcactttgtttatagccaacgctcccaattttatgtatatttatagaaacatgcaaccgaattcttaact
gi|9 : gaaaagacacgatacttcttttctcttagacgaatggtagatatagcggggatctataccttcacatctcgtctgaacaaattcaccgtatcttcaagttttactcatggattttcaacagaagtacaaccatacgtcgcacccaaatcgtcacaattgaaaacgtcacaatcctcacataatagaatattccaacatcccttatctatttagtgcattataaatatatgaacaaatatttgtaagcccgttttatactgcgcataaaattaattattatgtaactaataatggacttatttaaatgaattgtaatatatatatatttctgtccatttacgtgACAAATT-CG--CCT-TATC--TTCAA-GTTTTACTCAT-GAACTTTC--AAC---AGAAG--TAC-T-AC-TA---TA--C-G-TC--AC-ACC-CAA---ATC-ATC-ACAACT-GAAAA-CA-TCA-C-AATCCTCACATAATA-GAACATTCAAACATCC-CACAGA-CATTCCA-T---TAG-TGCATTATAATTTATACCGAC--ATTC------AAACATC-C-------CA------------------------CAGAAATTT-CC-ATTAG-TGATTATAAA-------A-TT-TATAAC-C----A--GA--C--ATTCA-------A-AATT----CC----A-----CA-TGAA---AT-TCCA--T----------TAGT-G------CAT-----------TA----------TA-A--T-------TTTA--T-A---TCA--CAT---GCCACGAATTA-A-GATA-TA-TTT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAAACTCTGTAAACAATCATATTTTATTCTCATATGCATGTTGTTAAGTTGCCCAAAATTTTTACT