lowQualScore : 11111111111111111111111111111111
lowQualScore : 22 55 222222222 1 222 222 1 222 222 55555555555555 3333333333333 1 99999999999999999999999999999999 1 1 444444444444444 6666666666666666666666666666666666666666666666 99999999999999999999999999999999999999999999999999999999999999999 222222 1 1111 1 1 222222 11 2222 1 33333333333 44444444444444444 1 22 22 888888888888888888888 4 3333333 2 777777777777777777 222 11 333333333333333 1111 8888888888888888888888888888 4444444444 1 11 33333333 1 1 22222 33333333 1 333333333 222222 111 11 22222222 2 2222 1 00000000000000000000000000000000 1 55555555555555555555 1 11 1 11 333 333 1 222 55555555555 1 111 111 3333 1 7777777777777777777777777777777 666666666666666666666 11 1 1 3333333 66666666 1111 11 11 22 111 1 11 1111 555555 11 2222222222 2222222 11 3333333 11 22222 99999999999999999999999999999999999 1 333 2 11 11
lowQualScore : 99 3 55 6 666666666 1 3 7 3 333 333 3 333 7 333 33333333333333 0000000000000 2 00000000000000000000000000000000 3 7 3 777777777777777 8 8 999 8 0 0 2222222222222222222222222222222222222222222222 8 99999999999999999999999999999999999999999999999999999999999999999 111111 0 7777 2 0 0 5 888888 33 7 7 7777 3 3 77777777777 1 99999999999999999 6 3 6 88 11 8 3 3 8 88 88 4 777777777777777777777 3 0 2 4444444 4 6 888888888888888888 222 6 88 444444444444444 9999 1111111111111111111111111111 6666666666 7 7 0 77 2 8 22222222 0 5 0 22222 4 3 2 11111111 8 0 444444444 3 666666 7 111 4 33 3 11111111 1 8 77 8 4 8 5 3 3333 2 0 99999999999999999999999999999999 0 77777777777777777777 3 0 33 0 7 2 0 44 4 77 7 888 0 0 4 222 0 111 66 77777777777 6 111 444 3 1 5555 6 8 2 6 6 1 0 5 2222222222222222222222222222222 8 5 222222222222222222222 11 88 0 6 6 6 2222222 5 5 3 6 00000000 7777 8 99 11 22 55 1 0 8 111 1 5 6 2 00 5 77 7777 666666 3 5 11 9999999999 6 5 6 3 6666666 11 4444444 11 1 00000 8 8 88888888888888888888888888888888888 5 4 2 7 2 999 0 6 2 6 0 55 2 00 5 5 0 77
lowQualScore : .. . .. . ......... . . . . ... ... . ... . ... .............. ............. . ................................ . . . ............... . . ... . . . .............................................. . ................................................................. ...... . .... . . . . ...... .. . . .... . . ........... . ................. . . . .. .. . . . . .. .. . ..................... . . . ....... . . .................. ... . .. ............... .... ............................ .......... . . . .. . . ........ . . . ..... . . . ........ . . ......... . ...... . ... . .. . ........ . . .. . . . . . .... . . ................................ . .................... . . .. . . . . .. . .. . ... . . . ... . ... .. ........... . ... ... . . .... . . . . . . . . ............................... . . ..................... .. .. . . . . ....... . . . . ........ .... . .. .. .. .. . . . ... . . . . .. . .. .... ...... . . .. .......... . . . . ....... .. ....... .. . ..... . . ................................... . . . . . ... . . . . . .. . .. . . . ..
lowQualScore : 00 2 00 0 444444444 8 8 3 3 333 333 3 333 3 333 77777777777777 3333333333333 3 00000000000000000000000000000000 3 7 3 000000000000000 0 0 000 0 8 8 1111111111111111111111111111111111111111111111 0 55555555555555555555555555555555555555555555555555555555555555555 222222 0 8888 5 0 0 0 888888 88 3 3 7777 3 7 33333333333 0 00000000000000000 7 3 0 33 00 3 7 7 3 00 55 0 000000000000000000000 0 0 5 5555555 0 7 000000000000000000 777 7 33 333333333333333 3333 3333333333333333333333333333 3333333333 3 3 0 55 5 2 88888888 8 0 0 55555 0 5 5 00000000 8 0 000000000 2 555555 0 000 0 77 7 00000000 4 2 00 0 0 0 0 0 0000 5 0 88888888888888888888888888888888 0 55555555555555555555 5 0 88 2 0 5 0 00 0 00 0 555 2 2 0 555 0 000 55 33333333333 0 000 000 2 0 2222 7 0 2 7 7 4 6 8 2222222222222222222222222222222 0 8 000000000000000000000 00 88 8 0 0 2 2222222 0 8 2 2 00000000 0000 0 00 00 00 66 4 6 0 000 4 0 0 2 44 4 00 0000 888888 2 0 22 6666666666 2 0 0 6 0000000 00 0000000 00 4 00000 0 0 88888888888888888888888888888888888 5 0 5 8 5 555 6 7 2 7 0 00 2 55 0 0 8 99
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGC-----GGC-ACGTTTATACTT-GCGG---TAT---GCA-TC---AGAAACGTTGCGC---TATAAATAA----A---GT-T--ACATGAAAA-ANTAT--TACTTCCGCCGTTATT---TT---AAA--------NGTGCCATTA-G-TG-TCATANGAAAT-CATGTGATAC-T--------T-G-T-TGTC-GTCTG-CTTTGTTTAC-AACAA--TGAAA--AC-CGA-GA----AA-GTGAG----A---TG-GGTCGAAAA-G--------AA----AAAGA-----ACTC-G-NAC--T-GAG-GTG----AAAG---AAA---TCGT-ATT-GAA-TTACTAGA--G-GGNGA-AAA-CCATCAGA------TTTG--TGTCAGATCT-GTTG-AANATTCC-CA-G-TC---TGCGATTGA-ANATANA---AA---AAGTTT-TGAGNCGCGAGGATNAGTCGAAAACATA--AAGAAGTGGACNGCCNCCGAAAATCAGTT-AACNCAAGGCGNGATTACCGNAAGTTGGAGAGAGGNTGGTGAAAAGTAATAG-A-GGACA-----TT---TGACGGATATTACT-A-AAAA--TTTAACG--AA-ATAGAGA---AGTG-CNNTTAGCAAGC-GA--TGTACAA--TTCAAT------TACATAGACATAGTT--AC-NAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAAGAAAC--G-----CTTATCGTGGTG-CAG--AGAAAAAAGGCANTNGACTGTTG---AC-GACACTGG-AATGAAGTAT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGNCATGATGAACGAG-TTC-GNATTTGGCGGAAAAAAGA-CGAAGG-ATGGAGGCCCGACCTNGTAGCNCCGCGCGGG-ACTCGGCCACGT-----TTTG-AAGT------TA-TGAT-ATGGG-GACTGTATCANCT--G-N-ANGGTGTTGG-AA--CCATCACAGCTGTAGAAGGNAA-TAT-NAATGCNGNNAAATATCA-GCAGATTCTGGACGANAA-CCTGTGGCCTG-TC-TTAGCNNGGCATTT-NCC-CGAAATGGA-ACTATATTTT-C-AGGACGATAATGCGCCCGTCCACCGAG--CCAGNTCGAC-CCA-GAATTTCTTGCACAGGAA-CGG----------TAT-AATAC-----A--ATGAGCTGG-CCTGCNCAG-----AGTCA--CG-ATA-TA--AAT-ATGATTGAAAAATGTNTG-GTTNT-ACATTAAAAGAAAGCTNCAANCNCGAG-TCGGCAGG----ATCAA-ATGTCGA--GATCTGATTTGTTCCGTGAAA-TTCGGNACATTTGGACTCGACATCACGCCCGCCTACGTTCAANGCC----TATACCGAGCTCGATTCCGAAACGAATATT----NAGCAAGTNATCAGACTGAAAGGACACCTNACA-------AAA--TAT-------TAG--GTAAGTCA-----TT-A-TTTAATTAA-TT-CA-----------AAT--GA-------AATATATNCAGNCGNCAAGANATTG-ACCCACTTTCGTCG-CGAA-GGTAAACGCGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
Reference ( gi|1 ) : TGTGATGCAATAGAGTATT--GACAAGATGAC-----GTT-ATGTTTATACTT-GCGG---TAT---GCA-TC---AGAAACGTTGTGC---TATAAATAA----A---GTAT--ACATAAAAA-AATATCGTACTTCCGTTGTTATT---TT---AAA--------AGTGCCATCA-G-TG-TCATATGAAAT-CATGTGA--C-T--------T-G-T-TGTC-GTCTG-CTTTGTTT-C-AACAA--TGAAA--AC-CGA-GA----AA-GTGA-----A---TG-GGTCGAAA--G--------AA----AAAGA-----ACTC-G-T-C--T-GAG-GTG----AAAG---A-----TCGT-ATT-GAA-TTACTAGA--G-AAGGA-AAA-CTATCAGA------TTTG--TGTCAGATTTTATTG-AACATTCC-CA-G-TC---TACGATTGG-ATATATA---AG---AAGGTT-TAAGGTGCAAGGTTCAGTCGAAAACTTAATAAGAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTG--AAG--GTTGGT-AAAAGTAATAGGA-GGAC------TT---TGACAGATATTACT-A-ACAA--TTTAATG--AA-ATAG-GA---AGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTT-TAC-TAGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAAGAAAC--G-----TTTATCGTGGTG-CAG--AG-AAAAAGGCATTTGACTGTTG---AC-GACACTGG-AAT-AAGTAT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCACGAG-TTC-ATATTTGGCGGAAGAGAGA-CGA-GG-ATGGAGGCCGGACTTAGTAGCGCCGCGCGGG-ACTC-GCC-TGT-----TTTG-A-GT------T--TGAT-ATGGG-GATTGT-TCACCT--G-C-ATGGTGTTGG-AA--CCATCACAGCTGTAGAAGGCAA-TAT-AAATGCAGAAAAATATCA-A-AGATTCTGGACAATAA-C-TGTGGCCTG-TC-T-AGCTCGGCATTT-AC--CGAA--GGAAACTACATTTT-C-AAGACGATAATGCGCCTGTCCACCG-G--CCCGTTCGAC-CCA-GAATTTCTTGCACAGGAA-CG-----------TAT-AATAC-----A--ATGAGCTGG-CCTGCACAG-----AGTC---CT-ATA-TA--AAT-GTGATTG-AAA-TATATG-GT-GC-ATATTAAACGGAAGCTACAAGCACGA--TCCG-AGG----ATCAA-ATGTCGA--GA--TGACCTGTTCCGTGAAA-TCCAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCC----TATACT-A--TCGATTCCCAGGCGAATATT----GAGT--GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------TAG--GTAAGTCA-----TT-A-TTTAATTAA-TTACA-----------AAT--GA-------AGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG-CGAA-GG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|5 : TGTGATGCAATA-AGTATTCGGACAAGATAGC-----GTC-ATGTT-ATATTT-GCGG---TAT---GCA-TC---AGAAACGTTGCGC---TATAAATAA----A---GTCTTTACATGAAAA-ATTATCTTACTTCCGTTGTTATT---TTT--AAA--------AGTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA--C-T--------TTG-T-TGTC-GTCTG-CTTTGTTTAC-AACAT--TTAAA--ACACGA-GA----AAAGTGAG----A---TG-GGTCGAAAA-G--------GA----AAAGA-----ACTC-GGTAC--T-GAA-GTG----AAAG---AAA---TCGT-ATT-GAAATTACAAGA--GGAAGGA-AAAACTATCAGA------TTTG--TGTCAGATTT-ATTG-AACATTCC-CAAG-TC---TGCGATTGA-AGATATA---AAGAAAAGGTT-TGAGGTGCGAGGTTAAGTCGAAAACTTAAAAAGAAGTGGACTGCCATC----ATCAGTT----ACAAGGCGTGATTACCGCAAGTTGGAAAG--GTTGGTGAAAAGTAATAGGAGGGACATGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAA-ATAGAGA---AGTG-CCTTTAGCAAGCAGC--TGTACAG--TTCA-T------TACATAGACATAGTTATAC-TAGGCGTGTAGCAAAGAAG-AACTCGTAGTTCGG-GAAGTCAACCGGAAGAAAC--G-----TTTATCGTGGTG-CAG--AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATAAAGTA--ATATTCTCAGATGA-ATCT-AAATTATGAT-T-GGTCGTGAT
gi|3 : agTGTGATGCAATA-AGTATTCGGACAAGATGGC-----GGC-ACGTTTAgtc
gi|10 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctcggtaatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggTGTGATGCAAT--AATATTAAGACAAGATGGC-----GGC-ATGTTCA-ACTTGGCGG---TAT---GCACTCAAGAAAAACG-TGTGG---TATAAATAAAATCA---ATAT--ACATAAAAATGACAT--TACTTCCG-TGTTATTCCCTTGGGAAA--------CTTG-CATAA-ACTGTTCATAAAAAATCCATGTGA--C-TGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTT----ACAT--TGACA--AC-
gi|6 : agGATGCAATA-AGTATTCGGACAAGATGGC-----GGC-ACGTTTAattttaaaatac
gi|8 : tatttggcggaaaagagacgagggatggaggccggacttagtagcgccgcgcgggactcagccatgttttgaagttatgatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatacaagttcagaaaaatatcaacagattctggacagtaacctgtggcctgtcttagctcggcattttatcgaaggaaactacatttttcaagacgataatgcgcctgtccactgagcccgttcgacccagaatttcttacacaggaacggtattaatacaatgagctggcctgcacagagtctcgatataaatgtgcttgaaaatatttggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgagatgacctgttccgtgaaatccaagacatttggactcgaatcacacccaagtatgttaaatgcctataccgatcgattcccaggcgaatattttaaaaatgttatccgactgaaaggacatctaacaaaatattaggtaagtcattatttaattcaaatgaaatacatacaggcattaagagattgacccactttcgttgcgaaggGATGAAATAAA-TATTTGGAAAAGATGGCCGCGTGTTGAGATTTGTACAT-GTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAA----AAAGGT-T--ATAT----A-AGT-TGGTACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTTT--CTT--------T-G-T-TGAC-ATCTG-CTTTATAA-A-GAAAA--TTTAA--ACGCGGTGATTTCAA-GTGAG----A---TG-GGACGAAA--AGCATATACAT----ATAGC-----ATTC-G-G-TAATAGAG-GGG----AAAG---AAAAGCGCGG-A----AA-CTACTCGATCA-AGGGAGAAA-CCATCAGA------TATGCTCGTCTG-TCTTGTTATAGTATTTCAAA-G-TG---TACGACTCA-AAATAAAAAGAA---AAGTTT-TGAGAAGTGAGGATTTGTAGAAAACATA--AAAAAATGGAC
gi|2 : ATGTGATAC-T--------TAG-T-TA---GTCTG-CTT-ATTTAC-AAGCA--GGAAACAAT-TGA-GA----A--GTAA-----AACATG-GGTCGAAAAAG--------GA----AAGGA-----GATG-G-G-C--T-TAG-ATGTCCAAAAG---G-----TCATTGTG-GAG-TTATTACA--G-GGTGG-ATA-CAGTCGGAGAAAAATTAG--TG--AGAT---GTTG-AAGTTGCC-CA-AATCAAGTGTTATTGACGTTTGCA---AA---AAATTTCTGAATCG---GGATCAGTTGAAAACAAACCGAGAAGTGGTCGGCCTCCGAAAATCA----AACCC----CGGGATTATCGGAAGTTG--GAGAGGATTGT-GAAACTAATCGCA-GATG------TTCACTGTCGGATATAACT-GCAAAA--TTTAACG--AAGAGAA-GACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAATT--ACAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGAGAAACCGA-----CTTGCC-TGGTGTCGG--GG-GAAAAGACGATGGACTGT-----A--GAGACTGG-AA--ACGTGTGATATTCTCAGATGA-GC--AAAATCATGAA-TAGGACATGACGAAAGAG-TAA-GGATTTGGAGGAAAAAAGAACGAAGG-ATGGAGGCCCGATCTCGT---TCAACACGGC-ATTCCGCA-AGCAAAAGTACG-AAGT------CA-TGAT-ATGGG----TGT-TTTGTT--G-GGAGGGTATTGGGAA--CTTTAACGCCTGTGGAAGGAAAATAT-TAATGCTGCTAA-TATCA-GGACATTTTAGAGGAAAA-CCTGTGGCCAG-TT-TTAGCAAGACATTC-CCT-CAAAATGGATACT---TTTT-T-AGG-CGACAACGCGCCCGTCCATCG-GAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAA-CGC----------TAT-AA-AC-----TGTATAAGCTGGCCCTGCCC-------AATCACGCG-ACA-TAATAATAATGA--A-AAA-TGTATG-GA-TC-ACATAAAAAGAAAACTCCAATCTCG---TAC--AGG----TGCAATAAATCAA--GATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTT----TGTA-T-GGCTCCATTCCGAAACG--CATT----CAGCAAGTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------GAATTGTAAGTAA-----TTAA-TTTTTTTAA-TTCTA-----------TGTTCGATTTTGTTAAAAT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG-TCAGTGT-AAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--
gi|13 : ATGTGATAC-T--------T-GGT-TGTC-GTCTG-C--TGTTTACAAACAAGGGGAAA--AT-GGA--A----AA-GTTAAAAACA---TG-GGTCGAAAAGG--------AA----AAACA-----Acgtta
gi|16 : A--AT-TGA-GA----A----GA-----A---TGTGGTCAAAA--A--------AATGGCAAAAATCGAGACTCTG-TAC--T-GAAAGTG----AAAAGAAA-----TCGT-ATTCAAA-TTTCTAGT--G-GATAA-AAA-CCATCAAG------TTTG--Tataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATAG---AGACAG----TT---TAACAGTTATTACTAA-AAAA--ATTAATGA-AA-ATAGAGA---AGTGCCTATTAGCAAGC-GAGCTGTAC-AGTTTCAAT------TACATAGACATA
gi|3 : ggttaTAGTT--AC-CAGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAAGAAAC--G-----CTTATCGTGGTG-CAG--AGAAAAAAGGCATTTGACTGTAG---ACGGACACTGG-AATGAAATA--ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTTC-AT-TATGGCGGATAAGAGA-CAAGGG-ATGGAGGCCGGACTTAGTAGCGCCGCGCGGG-ACTCGGCCATGT-----TTTGAA-GT------T----AT-ATGGG-GA-TGTATCACCTG-G-C-ATGGTGTTGG-AA--CCATCACAGCTGTAGAAGGCAA-TATAAAATGCAGAAAAATACTA-ACAGATTCTGGACAATAACC-TGTGGCCTG-TCTT-AGCTCGGTA
gi|9 : GG-GATGGAAAC---AGGAAAC--GGAGACTTTCTT-TGGTA-CAGTAAA-AAAAAGGAAATAGACT-TTGCGCAT-GG-ACTGGCAAT-GGTCAT-AT-TTTTCTGACGAGAGC--AAGT--TGATCT-CGACATGATGAGCGGG-CTCAAAATATGGTGGACAAAAAG-CGA-GG-ATAGCGCTCCGACCTatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|6 : gaaatttgcaaaTATTTGGCGGAAAAGAGA-CGA-GGGATGGAGGCCGGACTTAGTAGCGCCGCGCGGG-ACTCAGCCATGT-----TTTG-AAGT------TA-TGAT-ATGGG-GAT-GTATCACCT--GGC-ATGGTGTTGG-AA--CCATCACAGCTGTAGAAGGCAA-TAC-AAGTTCAGAAAAATATCA-ACAGATTCTGGACAGTAA-CCTGTGGCCTG-TC-TTAGCTCGGCATTTTAT--CGAA--GGAAACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTGAG--CCCGTTCGAC-CCA-GAATTTCTTACACAGGAA-CGG----------TATTAATAC-----A--ATGAGCTGG-CCTGCACAG-----AGTCT--CG-ATA-TA--AAT-GTGCTTG-AAAATATTTG-GTTGT-ATATTAAACGGAAGCTACAAGCACGAG-TCAGCAGG----ATCAA-ATGTCGA--GA--TGACCTGTTCCGTGAAA-TCCAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCC----TATACCGA--TCGATTCCCAGGCGAATATTTTAAAAAT--GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------TAG--GTAAGTCA-----TT-A-TTTAATT------CA-----------AAT--GA-------AATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG-CGAA-GGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtgcgtccaaggtaaagggacacgcaaccccaaattcaggcaaaatgatatggaaactgagatgttggaaacggggttggaacatttaagaaaataatggaaatataacttgctgaaaaagaatatcaggacattttattgaggaaaatttatgg
gi|4 : ATTTGG-AGAAAAAAGA-TGAAGG-ATGGAGGCCTGATCTCGT---TCAGAGCGGGCATTC--CT-CAA-----GCTG-A-GTACGAAGTCATGATCATGGGCGGCAAT-TTAGGTTGG-G-AAGGTGTTGG-GATTTTAACGCAAGTGT--AAGGAAA-TGT-TAATGCTGCTAAGTATCAGG-AAATTTAAAATGAAAA--------CCTGTTT-T-AGCAAGACATTT-TCCTCAAAATGGA---TATTTTTT-C-AGGATGACAATGCACCCGTTCATCGAG--CTAGATCAACACAA-GAAT
gi|7 : atagtactgatggaaggattaggTATATCTT-CCAAGATGATAATGCCTCCGTGCACCGAG--CTAGGACCAC-TCA-GAGATACATGGTCAGGAACCG-----------AAT-AA-ACGGATAA--ATGAGTTGG-CCAGCTCAGTCACCGGAC---CT-----TA--AA--ATTATTGAAAA-TGTTTG-AC-TCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGG-ACA----ATAAA-A--TCAAACGA--TGATTGGTACCATGCGA-TTTTTAACATTTGGACGGAA-ATTTCTCCTGCCTGCATTCA--GCCCTTGTATAA--A--TCAATTCCGAAAATAATTTT----GAAT--GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------TAG--ATAAATCAATTGGTT-A-TTTAacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|3 : gCGGTAATGCGCCTGTCCACCG-AA-CCCGTTCGAC-CCA-GAATTTCTTACACAGGAG-CGGTATTACAAAATGT-AATAC-----A--ATGAGCTGA-CCTGCACAT-----TGTC---CGGATA-TA--AAT-GTGATTG-AAAATATCTG-GTTGT-ATATTAAACGGAAGCTACAAGCACGAG-TCAGCAGG----ATCAA-ATGTCGA--AA--TGATTCGTTCCGTGAAA-TCCAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCC----TATACCGA--TCGATTCCCAGGCGAATATC----GAGC--GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------TAG--GTAAGTTA-----TT-A-TGCAAGTAATTTACA-----------AAT--GA-------AATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG-CGAA-GGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAtgtatgcatatagtcacgtagccagtttacaaaaatgaccatgtctagtcaattcaatggcgacgtctccattgtgaccgaatacctttggcacg
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGCACCCGTCCATCGAG--CTAGATCAAC-ACAAGAATACGTGGC-CAGAAA-T------------------CAC-----A--TTAAGATGG-CCTGCCC-------AATCA--CC-AGACTA--AAT-ATCATTGAAAA-TGTACGCCT-AT-ACATCAAAAGAAAACTCCAATCTCGA--AC---AGGTGCAATAAA-A--TCAA--GATCTGATTTGACCGAGGAAA-TTCGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCT----TGTA-T-GGCTCCATTCAGAAACG--TATT----CAGCAAGTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGTAA--GTAATTTA-----TT-ATTTTAATT---TT-CATGTTCGTTTTTATT--GA---------TAT-TTCAGCCGACAAAATATTGA---TACGTTCGTCGTCAGA-GT-AAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGC
gi|11 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnCTTTCGTTT-CAAA-CGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACgcgtgactacctatatcagcattatttacccttatagcaa
gi|17 : tttgaaataca-CAAA-GG-TAACGTGACGCCATTTTA--A-CGAATAC-TTTTTGCA--TGACcaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|5 : actacagaAACATGACGCTATCTTG-TC-CGAATAC-TTATTGCA--TCACACtttacagtcaccgcatactttggctgtaaat
gi|10 : aAACATGCCGCCATCTTG-TC-TTAATA--TTATTGCA--TCACACatatttgcggtatgcatcagaaacgttgcgctataaataaagtctttacatgaaaaattatcttacttccgttgttatttttaaaagtgccattacgtgtcagaggaaatcatgtgactttgttgtcgtctgctttgtttacaacatttaaaacacgagaaaagtgagatgggtcgaaaaggaaaagaactcggtactgaagtgaaagaaatcgtattgaaattacaagaggaaggaaaaactatcagatttgtgtcagatttattgaacattcccaagtctgcgattgaagatataaagaaaaggtttgaggtgcgaggttaagtcgaaaacttaaaaagaagtggactgccatcatcagttacaaggcgtgattaccgcaagttggaaaggttggtgaaaagtaataggagggacatgcagtttgacagatattactaacaaattttaatgcaaaatagagaagtgcctttagcaagcagctgtacagttcattacatagacatagttatactaggcgtgtagcaaagaagaactcgtagttcgggaagtcaaccggaagaaacgtttatcgtggtgcagagaaaaaaggcatttgactgttgacgacactggaataaagtaatattctcagatgaatctaaattatgattggtcgtgatgtc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AAGTTTGTATGGATTCATTCCGAAACGCATTCAGCAAGTAATCAGTCCAAAAGGTCACCTCACAAAGTATTGAGTTGTAAATACGTCATTTTTTTATGTTCGTTTTTATTAAGAATATTGATGCGTTCCTCGTCAGTGTAAACA
Unaligned ( gi|14 ): CTATATTCAAAGCTTATATGTCTCAATTCCGAGGTGAATTCGACAAGTAAGAAAATCAAAGGGACATGCAATAAAATATTGATTTTGTGGTGTTTGAATTTTGCGTTTACGTGTTT
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA
Unaligned ( gi|19 ): ACGTCGCCGTTGTAACCGAATACTTTTGGCACGTTTCT
Alignments
lowQualScore : 222222 111 333333333 111 11111 5555555555 1 1 22 11 44444444444444444444 22222 1 1 222222222 111111111111 1 1111111 222222 111111 2222222222 2222 111 11111 11111 1111 11 222222 11 222 1 22222222 1 333 1 333333 4444 22222222 5555 1 2222 444444444444 11111 1 22 2222 1 2222222 22 22222222 1 11111 111 111 1 11111111 1111 2222 111111 1111 1111 111 333333333333333333333333 333333333333333333333 1111 111 1 1111 1 11 1111 1 33333333333333333333333333333 11 1111111 1 2222222 22 1 555555 1111111 2222222222222 1111 22222 55555555555555555555555555555 111 11
lowQualScore : 8 3 8 0 5 2 444444 8 444 0 222222222 8 444 0 55555 5555555555 0 0 1 77 22 77777777777777777777 2 44444 0 1 0 777777777 6 6 6 3 6 6 3 333333333333 99 3 6 9999999 666666 6 999999 1111111111 8 8 3333 8 444 8 66666 11111 8 7777 1 11 0 1 333333 11 3 111 0 1 88888888 0 1 1 555 3 0 55 66 4 1 0 77 666666 1 1 4444 55555555 7 1 7 1 2222 1 2 2 0 1111 111111111111 2 55555 0 2 33 3 3 1111 0 22 8888888 33 99999999 0 44444 8 2 3 3 8 33 444 444 0 8 3 1 1 77777777 5 8 0000 0000 0 222222 0 8 8 1 3 3 8888 6 5 6 7 5 1 5555 2 111 6 888888888888888888888888 99 7 6 000000000000000000000 1 6 1 99 2 1 4444 1 6 77 6 1 22 111 1 0 1 99 1 1 1 1 0 22 7777 5 33 1111 8 0 5 1 1 0 5 5 1 66666666666666666666666666666 6 1 55 8888888 6 1 5 7 1 8 22 3 1 1 1 6 1 1111111 6 88 1 22 6 555 2 9 2 0 33 0 1 333333 1 99999 1 0 888 1 1 6666666 66 1111111111111 2222 5 00000 1 00000000000000000000000000000 6 3 1 7 1 1 33 1 888 000 1 0 2 4 00 5 5 2 99
lowQualScore : . . . . . . ...... . ... . ......... . ... . ..... .......... . . . .. .. .................... . ..... . . . ......... . . . . . . . ............ .. . . ....... ...... . ...... .......... . . .... . ... . ..... ..... . .... . .. . . ...... .. . ... . . ........ . . . ... . . .. .. . . . .. ...... . . .... ........ . . . . .... . . . . .... ............ . ..... . . .. . . .... . .. ....... .. ........ . ..... . . . . . .. ... ... . . . . . ........ . . .... .... . ...... . . . . . . .... . . . . . . .... . ... . ........................ .. . . ..................... . . . .. . . .... . . .. . . .. ... . . . .. . . . . . .. .... . .. .... . . . . . . . . . ............................. . . .. ....... . . . . . . .. . . . . . . ....... . .. . .. . ... . . . . .. . . ...... . ..... . . ... . . ....... .. ............. .... . ..... . ............................. . . . . . . .. . ... ... . . . . .. . . . ..
lowQualScore : 0 2 2 8 0 8 444444 0 000 8 000000000 0 000 8 44444 0000000000 5 0 0 55 55 00000000000000000000 5 88888 0 0 0 555555555 7 7 7 5 7 7 2 888888888888 22 3 7 2222222 333333 7 222222 8888888888 0 0 8888 0 000 0 66666 44444 0 0000 0 00 8 4 000000 00 2 555 0 0 88888888 0 0 0 000 0 0 22 88 0 0 2 22 000000 0 0 3333 77777777 3 0 3 0 3333 0 5 5 0 0000 555555555555 0 88888 0 0 88 2 2 2222 0 00 2222222 88 00000000 0 88888 8 0 2 2 0 88 000 222 0 0 8 0 0 22222222 0 0 4444 6666 8 000000 8 0 0 0 6 2 6666 7 2 7 3 2 0 8888 5 777 7 000000000000000000000000 22 3 7 333333333333333333333 0 7 0 22 5 0 2222 0 7 77 7 0 00 777 7 8 0 22 0 0 0 0 8 00 8888 5 22 6666 0 8 7 3 0 4 7 7 7 33333333333333333333333333333 7 0 33 3333333 7 0 5 3 0 5 77 0 0 0 0 7 0 3333333 7 77 0 22 7 333 5 2 2 7 22 7 0 333333 7 55555 0 2 555 0 0 2222222 99 5555555555555 1111 7 00000 4 77777777777777777777777777777 7 5 7 3 0 0 22 0 333 000 7 1 7 7 00 7 7 1 22
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTT-GCG---GTAT---------GCA-TC---AGAAACGTT--GC-GCTATAAATAAA---GTC----TACATAAAAA-GNTATC-TACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAAGG-----AAA-------A--GA-ACTC-GGT-ACTGAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAG-TC---TGCGATTGA-ANATATAAAGAAAAGNTT-TGAGGCGCGAGGNTCAGTCGAAAACNTAAC--A--GAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAG--GTTGGTGAAAAGTAATA-GA--GGACG-T-----T---TGACAGATATTACT-A-A-AAATTT-AATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-TTA--CT-AGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCGCCGCGC---GGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTG-TATCACCT--G--NANGGTGTTGG-AACCAT--CACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTCC-CGAAGTGGA-ACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGATTGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCCTGTAC--GG-CTCGATTCCGAGGCGAATA-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
Reference ( family-3842 ) : TGTGATGCAATA-AGTATTCGGACAAGATGGCGGCACGTT---TATACTT-GCG---GTAT---------GCA-TC---AGAAACGTT--GC-GCTATAAATAAA---GT-----TACATGAAAA-ANTAT--TACTTCCGCCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAAGA-----AAA-------A--GA-ACTC-GN--ACTGAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGGNG--AAAACCATCAGA------TTTGT--GTCAGATCT-GTTG-AANATTCCCA-G-TC---TGCGATTGA-ANATANAAA---AAGTTT-TGAGNCGCGAGGATNAGTCGAAAACATAA---A--GAAGTGGACNGCCNCCGAAAATCAGTT-AACNCAAGGCGNGATTACCGNAAGTTGGAGAGAGGNTGGTGAAAAGTAATA-GA--GGACA-T-----T---TGACGGATATTACT-A-A-AAATTT-AACG--AAATAGAG----AAGTG-CNNTTAGCAAGC-GA--TGTACAA--TTCAAT------TACATAGACATAG-TTA--CN-AGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCANTNGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGNCATGATGAACGAGTTC-GNATT-TGGCGGAAAAAAGA-CGAAGGATGGAGGCCCGACCTNGTAGCNCCGCGC---GGG-ACTC----G----GCCACGT-----TTTG--AAGTTATGAT-ATGGG-GACTG-TATCANCT--G--NANGGTGTTGG-AACCAT--CACAGCTGTAGAA----GGNAA-TAT-NAA-TGCNGNNA---AATATCAGCAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCNNGGCATTTNCC-CGAAATGGA-ACTATA-TTTTC-AGGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATATGATTGAAAAATGTNTGGTTNTACATTAAAAGAAAGCTNCAANCNC-GAGTCGG----CAGGATCAA-ATGTCGAGATCTGATTTGTTCCGTGAAATT-CGGNACATTTGGACTCGACATCACGCCCGCCTACGTTCAANGCCTATACCGAG-CTCGATTCCGAAACGAATA-TTNAGCAA-GTNATCAGACTGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGANATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|1 : TGTGATGCAATAGAGTATT--GACAAGATGACGTTATGTT---TATACTT-GCG---GTAT---------GCA-TC---AGAAACGTT--GT-GCTATAAATAAA---GTA----TACATAAAAA-AATATCGTACTTCCGTTGTTATT---TT---AAAA--------GTGCCATCA-G-TG-TCATATGAAAT-CATGTGA------C--TT-G-T-TGTC-GTCTG-CTTTGTTT-CA---A-CAATG--AAA--AC-CGA-GA----AA-GTGA-A----TG-GGTCGAAA-GA-----AAA-------A--GA-ACTC-GT---CTGAG-GTG---AAA-GA-----TCGT-ATT-GAA-TTACTAGA----GAAGG--AAAACTATCAGA------TTTGT--GTCAGATTTTATTG-AACATTCCCA-G-TC---TACGATTGG-ATATATAAG---AAGGTT-TAAGGTGCAAGGTTCAGTCGAAAACTTAATA-A--GAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTGAAG----GTTGGT-AAAAGTAATAGGA--GGAC--T-----T---TGACAGATATTACT-A-A-CAATTT-AATG--AAATAG-G----AAGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTTTA--CT-AGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAA---GAAAC--GTTTATCGTGGTGCAG-AG-AAAAAGGCATTTGACTGTTG---AC-GACACTGG-AAT-AAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCACGAGTTC-ATATT-TGGCGGAAGAGAGA-CG-AGGATGGAGGCCGGACTTAGTAGCGCCGCGC---GGG-ACTC---------GCC-TGT-----TTTG---AGTT-TGAT-ATGGG-GATTG-T-TCACCT--G--CATGGTGTTGG-AACCAT--CACAGCTGTAGAA----GGCAA-TAT-AAA-TGCAGAAA---AATATCAA-AGATTCTG--GACAATAA-CTGTGGCCTGTC-TAGCTCGGCATTTA-C-CGAAG-GAA-ACTACA-TTTTC-AAGACGATAATGCGCCTGTCCACCG--GCCCGTTCGAC-CCA-GAATTTCTTGCACAGGAAC-GTA-T----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTC-C--T--ATA-TAAATGTGATTG--AAATATATGG-TGCATATTAAACGGAAGCTACAAGCAC-GATCCG------AGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCCTATACTA----TCGATTCCCAGGCGAATA-TTGAGT---GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATTA-CA-----------A----AT-GAAGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG---CGAAGG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|10 : TGTGATGCAATA-A-TATTAAGACAAGATGGCGGCATGTT---CA-ACTTGGCG---GTAT---------GCACTCAAGAAAAACG-T--GT-GGTATAAATAAA---ATCAATATACATAAAAATGACAT--TACTTCCG-TGTTATTCCCTTGGGAAAC--------TTG-CATAA-ACTGTTCATAAAAAATCCATGTGACTGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTTACATTGA-CAA
gi|11 : agCTTTCGTTT---CAAACGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACcattttaaaatac
gi|12 : tttgaaatacaATTCCGAAACG--CA-TTCAGCAA-GTAATCAGTCCAAAAGGTCACCTCACA-------AAG--TAT-------TGAGTTGTAAATACGTC-ATTT-----TTTTATcaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|13 : aagtttgtatggattcATGTGA----TAC--TT-GGT-TGTC-GTCTG-CT--GTTTACA---AACAAGGGGAAA--AT-GGA--A----AA-GTTAAAAACATG-GGTCGAAAAGG-----AAA-------A--gttcgtttttattaagaatattgatgcgttcctcgtcagtgtaaaca
gi|14 : CTATATTCAAAGCTTATAT---GTCTCAATTCCGAGGTGAAT---TCGACAA-GTAAGAAAATCAAAGGGACATGCAATA-------AAA--TAT-------T-acaaataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATA-GA---GACAGT-----T---TAACAGTTATTACTAA-A-AAAATT-AATGA-AAATAGAG----AAGTGCCTATTAGCAAGC-GAGCTGTACAGT-TTCAAT------TACATAGACATAgattttgtggtgtttgaattttgcgtttacgtgttt
gi|16 : ggttaA--AT-TGA-GA----A----GA-A----TGTGGTCAAAAAAATGGCAAAA-------ATCGAGACTCTGT--ACTGAAAGTG---AAAAGAAA---TCGT-ATTCAAA-TTTCTAGT----GGATA--AAAACCATCAAG------TTTGT--
gi|17 : GTCATGCAAAA-AGTATTCGT-TAAAATGGCGTCACGTTACCTTTGTTT-ACA---GT------------CA-CC---GCATACTTT--G--GCTGTAAAT
gi|2 : actacagaATGTGA----TAC--TTAG-T-TA---GTCTG-CTT-ATTTACA---A-GCAGG--AAACAAT-TGA-GA----A--GTAAAACA--TG-GGTCGAAAAAG-----GAA-------A--GG-AGAT-GG--GCTTAG-ATGTCCAAA--AGG---TCATTGTG-GAG-TTATTACA----GGGTG--GATACAGTCGGAGAAAAATTAGT--G--AGAT---GTTG-AAGTTGCCCA-AATCAAGTGTTATTGACGTTTGCAAA---AAATTTCTGAATCG---GGATCAGTTGAAAACA-AACCGA--GAAGTGGTCGGCCTCCGAAAATCA----AACCC----CGGGATTATCGGAAGTTGGAGAG--GATTGTGAAAC-TAATC-GC--AGATG-T-----TCACTGTCGGATATAACT-GCA-AAATTT-AACG--AAG-AGAAGACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAA-TTA--CAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGA---GAAACCGACTTGCC-TGGTGTCG-GGGGAAAAGACGATGGACTGT-----A--GAGACTGG-AA--ACGT-GTGATATTCTCAGATGA-GC--AAAATCATGAA-TAGGACATGACGAAAGAGTAA-GGATT-TGGAGGAAAAAAGAACGAAGGATGGAGGCCCGATCTCGT---TCAACAC---GGC-ATTC----C----GCAA-GCAAAAGTACG--AAGTCATGAT-ATGGG----TG-TTTTGTTG--G--GAGGGTATTGGGAACTTT--AACGCCTGTGGAA----GGAAAATAT-TAA-TGCTGCTA---A-TATCAGGACATTTTA--GAGGAAAACCTGTGGCCAGTTTTAGCAAGACATTCCCT-CAAAATGGATACT----TTTTT-AGG-CGACAACGCGCCCGTCCATCGGAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAACGCTA-T----------AA-AC-----TGTATAAGCTGGCCCTGCCCAA--TCAC--GCGACA-TAATAATAAT-GAAAAATGTATGGATC-ACATAAAAAGAAAACTCCAATCTC-G--T--A----CAGGTGCAATAAATCAAGATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTTTGTAT--GG-CTCCATTCCGAAACG--CA-TTCAGCAA-GTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------G-AATTGTAA----GTA-ATTAATTTTTTTAATTCTAT--GTT--CG-----------ATTTTGT-TAAA-AT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG---TCAGTGTAAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--
gi|3 : TAG-TTA--CC-AGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTAG---ACGGACACTGG-AATGAAAT-A--ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTT--CATTATGGCGGATAAGAGA-CAAGGGATGGAGGCCGGACTTAGTAGCGCCGCGC---GGG-ACTC----G----GCCATGT-----TTTG--AAGTT---AT-ATGGG-GA-TG-TATCACCTG-G--CATGGTGTTGG-AACCAT--CACAGCTGTAGAA----GGCAA-TATAAAA-TGCAGAAA---AATACTAACAGATTCTG--GACAATAACCTGTGGCCTGTCTTAGCTCGGTAcgtta
gi|3 : CGGTAATGCGCCTGTCCACCG-AACCCGTTCGAC-CCA-GAATTTCTTACACAGGAGCGGTA-TTACAAAATGTAATAC-----A--ATGAGCTGACC-TGCACATTGTCCG--G--ATA-TAAATGTGATTGAAAA-TATCTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAAAT--GATTCGTTCCGTGAAATC-CAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCCTATACCGA---TCGATTCCCAGGCGAATA-TCGAGC---GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTT-ATTA-----TGCAAGT--A---ATTTACA-----------A----AT-GAAATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGATGGAAGGATTA-GGATT-TGG-AGAAAAAAGA-TGAAGGATGGAGGCCTGATCTCGT---TCAGAGC---GGGCATTCCTCAA----GCTGAGT-----AC-G--AAGTCATGATCATGGGCGGCAA-T-TTAGGTTGG--GAAGGTGTTGG-GATTTTAACGCAAGTGTA--A----GGAAA-TGT-TAA-TGCTGCTA---AGTATCAGGAAATTTAA--AATGAAAACCTGT-------TTTAGCAAGACATTTTCCTCAAAATGGA---TATT-TTTTC-AGGATGACAATGCACCCGTTCATCG-AGCTAGATCAACACAA-GAAT
gi|4 : atagtacTGCACCCGTCCATCG-AGCTAGATCAAC-ACAAGAATACGTGGC-CAGAAAT------------------CAC-----A--TTAAGATGGCC-TGCCCAA--TCAC--C--AGACTAAATATCATTGAAAA-TGTACGCCTATACATCAAAAGAAAACTCCAATCTC-GAACAGG----TGCAATAAA-AT--CAAGATCTGATTTGACCGAGGAAATT-CGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCTTGTAT--GG-CTCCATTCAGAAACG--TA-TTCAGCAA-GTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGT-AA--GTAA----TTT-ATTAT----TTTAATT-------TT--CATGTTCGTTTTTA----TT-G--ATAT-TTCAGCCGACAAAATATTG-A--TACGTTCGTCG---TCAGAGTAAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGCacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|5 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnTGTGATGCAATA-AGTATTCGGACAAGATAGCGTCATGTT----ATATTT-GCG---GTAT---------GCA-TC---AGAAACGTT--GC-GCTATAAATAAA---GTCTT--TACATGAAAA-ATTATCTTACTTCCGTTGTTATT---TTT--AAAA--------GTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA----C-T--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CATTT--AAA--ACACGA-GA----AAAGTGAGA----TG-GGTCGAAAAGG-----AAA-------A--GA-ACTC-GGT-ACTGAA-GTG---AAA-GAAA---TCGT-ATT-GAAATTACAAGA----GGAAGGAAAAACTATCAGA------TTTGT--GTCAGATTT-ATTG-AACATTCCCAAG-TC---TGCGATTGA-AGATATAAAGAAAAGGTT-TGAGGTGCGAGGTTAAGTCGAAAACTTAA---AAAGAAGTGGACTGCCATC----ATCAGTT-A---CAAGGCGTGATTACCGCAAGTTGGAAAG--GTTGGTGAAAAGTAATA-GGAGGGACA-TGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAAATAGAG----AAGTG-CCTTTAGCAAGCAGC--TGTACAG--TTCA-T------TACATAGACATAG-TTATACT-AGGCGTGTAGCAAAGAAGAA-CTCGTAGTTCGG-GAAGTCAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATAAAGT-A--ATATTCTCAGATGA-ATCT-AAATTATGAT-T-GGTCGTGATGgcgtgactacctatatcagcattatttacccttatagcaa
gi|6 : agATT-TGGCGGAAAAGAGA-CGAGGGATGGAGGCCGGACTTAGTAGCGCCGCGC---GGG-ACTC----A----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GA-TG-TATCACCTG-G--CATGGTGTTGG-AACCAT--CACAGCTGTAGAA----GGCAA-TAC-AAG-TTCAGAAA---AATATCAACAGATTCTG--GACAGTAACCTGTGGCCTGTCTTAGCTCGGCATTTTAT-CGAAG-GAA-ACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTG-AGCCCGTTCGAC-CCA-GAATTTCTTACACAGGAACGGTATT----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTCTC--G--ATA-TAAATGTGCTTG-AAAATATTTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCCTATACCGA---TCGATTCCCAGGCGAATATTTTAAAAATGTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----T----TT--A---ATT--CA-----------A----AT-GAAATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtc
gi|7 : tTATA-TCTTCCAAGATGATAATGCCTCCGTGCACCG-AGCTAGGACCAC-TCA-GAGATACATGGTCAGGAACCGAA-T----------AA-ACGGATAA--ATGAGTTGGCC-AGCTC--AGTCACCGG--ACC-TTAAAATTATTG-AAAATGTTTGACTCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGGACAATAAAATCAA-A---CGA----TGATTGGTACCATGCGATT-TTTAACATTTGGAC-GGAAATTTCTCCTGCCTGCATTCAGCCCTTGTAT--AA-ATCAATTCCGAAAATAATT-TTGA--AT-GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------T-AG--ATAA----ATCAATTG-----GTTATTT--ATGTATG--CA-----------T----ATAGTCACGTAGCCAGTTTACAAAAA--TG-ACCATGTCTAGTCAATTCAATGGCGA---CGTCTCCATTGTG-AC-CGAATAC-CTTTGGCA--
gi|8 : gGATGAAATA-AATATTTGGAAAAGATGGCCGCGTGTT---GAGATTT-GTACATGTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAAAAAGGT-----TATAT---AA-GTTGG--TACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTT-----TCT--TT-G-T-TGAC-ATCTG-CTTTATAAAGA---A--AATT--TAA--ACGCGGTGATTTCAA-GTGAGA----TG-GGACGAAAAGC-----ATATACATATA--GC-ATTC-GGTAATAGAG-GGG---AAA-GAAAAGCGCGG-A----AA-CTACTCGATCAAGGGAG--AAA-CCATCAGA------TATGCTCGTCTGTCTT-GTTATAGTATTTCAAAG-TG---TACGACTCA-AAATAAAAAGAAAAGTTT-TGAGAAGTGAGGATTTGTAGAAAACATAA---A--AAAATGGACcg
gi|9 : GG-GATGGAAACAGGAAACGGAGAC---TTTCTT-TGGTACAGTAAAAAAAAGGAAATAGACT-TTGCGCAT-GG-ACTGGCAATG--GTCAT-AT-TTTTCTGACGAGAGC--AAGTT--GATCT-CGACATGATGAGCGGGCTCAAAATA-TGGTGGACAAAAAG-CG-AGGATAGCGCTCCGACCTTGC-GTCCAAGGTAAAGGG-ACAC----GCAACCCCAAAT-----TCAGGCAAA--ATGAT-ATGGA-AACTGAGAT--GTT--GGAAACGGGGTTGG-AA-CAT--TTAAG----AAAATAATGGAAA-TAT-AACTTGCTGAAAAAGAATATCAGGACATTTTATTGAGGAAAATTTATGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA
Unaligned ( gi|19 ): ACGTCGCCGTTGTAACCGAATACTTTTGGCACGTTTCT
Alignments
lowQualScore : 2222 111 333333333 111 22222 22222222 1 2222 1 44444444444444444444 22222 1 1 222222222 111111111111 1 1111111 222222 111 222222222222222 111 11111 11111 1111 11 222222 11 111 1 111 33333 2222 33333333 1 2222 333333 111 11111 1 22 2222 1 2222222 22 22222222 1 11111 111 111 1 11111111 1111 2222 111111 1111 11111 1111 333333333 11111111 33333333333333333333333 111 1111 111 111 1 11 1 33333333333333333333333333333 11 1111111 1 2222222 22 1 1111 1111111 2222222222222 1111 22222 55555555555555555555555555555 111
lowQualScore : 8 3 8 0 0 2222 1 444 0 222222222 8 444 0 9 00000 66666666 3 0 1 6666 0 77777777777777777777 2 44444 0 1 0 777777777 6 6 6 3 6 6 3 333333333333 99 3 6 9999999 666666 6 888 444444444444444 66 8 8 444 8 66666 11111 8 7777 1 11 0 1 333333 11 3 000 0 0 3 777 44 6 1 44 66 1 0 0 44 77777 8888 33333333 6 7 7 2 2 0 1111 777777 777 55555 0 33 3 3 1111 0 11 8888888 33 99999999 0 44444 8 2 3 3 8 11 444 444 0 8 3 1 1 77777777 5 8 0000 0000 0 222222 0 8 8 1 1 3 8888 6 5 6 7 1 1 33333 4444 6 666666666 99 88888888 99 7 6 55555555555555555555555 1 6 000 2 1 4444 1 6 6 6 1 111 1 44 1 99 1 1 9 0 1 3 000 5 88 99 8 0 5 1 1 0 5 5 1 66666666666666666666666666666 6 1 55 8888888 6 1 99 5 7 1 7 5 1 1 1 1 6 1 1111111 6 88 1 44 6 333 2 3 2 0 11 0 1 1 8 3 2 8888 5 0 888 1 2 1 6666666 66 1111111111111 2222 5 00000 1 00000000000000000000000000000 6 3 1 7 1 1 33 1 888 000 1 0 2 66 5 5 1 77
lowQualScore : . . . . . .... . ... . ......... . ... . . ..... ........ . . . .... . .................... . ..... . . . ......... . . . . . . . ............ .. . . ....... ...... . ... ............... .. . . ... . ..... ..... . .... . .. . . ...... .. . ... . . . ... .. . . .. .. . . . .. ..... .... ........ . . . . . . .... ...... ... ..... . .. . . .... . .. ....... .. ........ . ..... . . . . . .. ... ... . . . . . ........ . . .... .... . ...... . . . . . . .... . . . . . . ..... .... . ......... .. ........ .. . . ....................... . . ... . . .... . . . . . ... . .. . .. . . . . . . ... . .. .. . . . . . . . . . ............................. . . .. ....... . . .. . . . . . . . . . . . ....... . .. . .. . ... . . . . .. . . . . . . .... . . ... . . . ....... .. ............. .... . ..... . ............................. . . . . . . .. . ... ... . . . .. . . . ..
lowQualScore : 0 2 2 8 6 6666 0 000 8 000000000 0 000 8 6 00000 22222222 2 0 0 0000 5 00000000000000000000 5 88888 0 0 0 555555555 7 7 7 5 7 7 2 888888888888 22 3 7 2222222 333333 7 333 222222222222222 44 0 0 000 0 66666 44444 0 0000 0 00 8 4 000000 00 2 222 0 2 2 555 22 5 0 55 88 0 2 2 22 55555 3333 33333333 7 3 3 5 5 0 0000 555555 555 88888 0 88 2 2 2222 0 88 2222222 88 00000000 0 55555 8 0 2 2 0 66 000 222 0 0 8 4 0 22222222 0 0 4444 6666 8 000000 8 0 0 4 0 2 6666 7 2 7 3 0 0 00000 2222 7 222222222 55 33333333 22 3 7 33333333333333333333333 0 7 222 5 7 2222 0 7 7 7 0 777 7 77 0 22 0 0 3 8 4 2 555 5 00 44 0 8 7 3 0 4 7 7 7 33333333333333333333333333333 7 0 33 3333333 7 0 22 5 3 0 8 2 0 0 0 0 7 0 3333333 7 77 0 77 7 555 5 3 2 7 77 7 0 4 8 4 2 2222 0 2 555 0 0 0 2222222 99 5555555555555 1111 7 00000 4 77777777777777777777777777777 7 5 7 3 0 0 22 0 333 000 7 1 7 00 0 0 0 99
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAAN--AAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-GA--GGACA----GTT---TGACAGATATTACT-A-A-AAATTT-AATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-TTA--C-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTG---T-TCACCT--G--NANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
Reference ( family-3842 ) : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGCGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAAC--A-GAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-GA--GGAC-----GTT---TGACAGATATTACT-A-A-AAATTT-AATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-TTA--C-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTG---TATCACCT--G--NANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTCC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCCTGTACGGCTCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
gi|1 : TGTGATGCAATAGAGTATT--GACAAGATGACGTTATGTT---TATACTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTA----T--ACATAAAAA-AATATCGT-ACTTCCGTTGTTATT---TT---AAAA--------GTGCCATCA-G-TG-TCATATGAAAT-CATGTGA------C--TT-G-T-TGTC-GTCTG-CTTTGTTT-CA---A-CAATG--AAA--AC-CGA-GA----AA-GTGA-A----TG-GGTCGAAA----GAAAA-------AGA-----ACTCG-T-CT-GAG-GTG---AAA-GA-----TCGT-ATT-GAA-TTACTAGA----GAAGG--AAAACTATCAGA------TTTGT--GTCAGATTTTATTG-AACATTCCCA-GTC---TACGATTGGATATATAAG---AAGGTTTAAGGTGCAAGGTTCAGTCGAAAACTTAAT--AAGAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTGAAG--GTTGGT-AAAAGTAATAGGA--GGAC------TT---TGACAGATATTACT-A-A-CAATTT-AATG--AAATAG-G----AAGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTTTA--C-TAGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAA---GAAAC--GTTTATCGTGGTGCAG-AG-AAAAAGGCATTTGACTGTTG---AC-GACACTGG-AAT-AAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCACGAGTTC-ATATT-TGGCGGAAGAGAGA-CG-AGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC---------GCC-TGT-----TTTG---AGTT-TGAT-ATGGG-GATTG---T-TCACCT--G--CATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAT-AAA-TGCAGAAA---AATATCA-AAGATTCTG--GACAATAA-CTGTGGCCTGTC-TAGCTCGGCA-TTTAC-CGAAG-GAAACTACA-TTTTC-AAGACGATAATGCGCCTGTCCACCG--GCCCGTTCGAC-CCA-GAATTTCTTGCACAGGAAC-GTA-T----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTC-C--T--ATA-TAAATGTGAT--TG--AAATATATGG-TGCATATTAAACGGAAGCTACAAGCAC-GATCCG------AGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCCTATACTA-TCGATTCCCAGGCGAAT-A-TTGAGT---GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATTA-CA-----------A----AT-GAAGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG---CGAAGG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|10 : TGTGATGCAATA-A-TATTAAGACAAGATGGCGGCATGTT---CAACTTGGCG---GTAT---------GCACTCAAGAAAAACG-TGTGGTAT-----AAATAAAATCAATAT--ACATAAAAATGACAT--T-ACTTCCGT-GTTATTCCCTTGGGAAAC--------TTG-CATAA-ACTGTTCATAAAAAATCCATGTGACTGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTTACATTGA-CAA
gi|11 : agCTTTCGTTT---CAAACGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACcattttaaaatac
gi|12 : tttgaaatacaAAGTTTGTATGGATTCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGTCCAAAAGGTCACCTCACA-------AAG--TAT-------TGAGTTGTAAATACGTC-ATTT-----TTTTATcaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|13 : ATGTGA----TAC--TT-GGT-TGTC-GTCTG-CT--GTTTACA---AACAAGGGGAAA--AT-GGA--A----AA-GTTAAAAACATG-GGTCGAAAA---GGAAA-------Agttcgtttttattaagaatattgatgcgttcctcgtcagtgtaaaca
gi|14 : CTATATTCAAAGCTTATATGTCTCAATTCCGAGGTGA---A-TTCGACAA-GTAAGAAAATCAAAGGGACATGCAATA-------AAA--TAT-------T-acaaataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATA-GA---GACA----GTT---TAACAGTTATTACTAA-A-AAAATT-AATGA-AAATAGAG----AAGTGCCTATTAGCAAGC-GAGCTGTACAGT-TTCAAT------TACATAGACATAgattttgtggtgtttgaattttgcgtttacgtgttt
gi|16 : ggttaA--AT-TGA-GA----A----GA-A----TGTGGTCAAAAAAATGGCAA-------AAATCGAGACTCTGTACT-GAAAGTG---AAAAGAAA---TCGT-ATTCAAA-TTTCTAGT----GGATA--AAAACCATCAAG------TTTGT--
gi|17 : GTCATGCAAAA-AGTATTCGT-TAAAATGGCGTCACGTTACCTTTGTTTACA---GT------------CA-CC---GCATACTTTG-GCTGT-----AAAT
gi|19 : actacagaCGTCGCCGTTGTA-AC-CGAATAC-TTTTGGCA--
gi|2 : aATGTGA----TAC--TTAG-T-TA---GTCTG-CTT-ATTTACA---A-GCAGG--AAACAAT-TGA-GA----A--GTAAAACA--TG-GGTCGAAAAA--GGAAA-------GGA-----GATGGG--CT-TAG-ATGTCCAAA--AGG---TCATTGTG-GAG-TTATTACA----GGGTG--GATACAGTCGGAGAAAAATTAGT--G--AGAT---GTTG-AAGTTGCCCAAATCAAGTGTTATTGA-CGTTTGCAAAAAATTTCTGAATCG---GGATCAGTTGAAAACA-AACCGA-GAAGTGGTCGGCCTCCGAAAATCA----AAC-CCCGG---GATTATCGGAAGTTGGAGAGGATTGTGAAAC-TAATC-GC--AGAT-----GTTCACTGTCGGATATAACT-GCA-AAATTT-AACG--AAG-AGAAGACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAA-TTA--CAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGA---GAAACCGACTTGCC-TGGTGTCG-GGGGAAAAGACGATGGACTGT-----A--GAGACTGG-AA--ACGT-GTGATATTCTCAGATGA-GC--AAAATCATGAA-TAGGACATGACGAAAGAGTAA-GGATT-TGGAGGAAAAAAGAACGAAGGATGGAGGCCCGATCTCGT---T-CAACA----CGGC-ATTC----C----GCAA-GCAAAAGTACG--AAGTCATGAT-ATGGG----TG---TTTTGTTG--G--GAGGGTATTGGGAA--CTTTAACGCCTGTGGAA----GGAAAATAT-TAA-TGCTGCTA---A-TATCAGGACATTTTA--GAGGAAAACCTGTGGCCAGTTTTAGCAAGACATTCCCT-CAAAATGGA--TACT-TTTTT-AGG-CGACAACGCGCCCGTCCATCGGAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAACGCTA-T----------AA-AC-----TGTATAAGCTGGCCCTGCCCAA--TCAC--GCGACA-TAA---TAATAATGAAAAATGTATGGAT-CACATAAAAAGAAAACTCCAATCTC-G--T--A----CAGGTGCAATAAATCAAGATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTTTGTATGGCTCCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------G-AATTGTAA----GTA-ATTAATTTTTTTAATTCTAT--GTT--CG-----------ATTTTGT-TAAA-AT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG---TCAGTGTAAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--cgtttct
gi|3 : TAG-TTA--C-CAGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTAG---ACGGACACTGG-AATGAAAT-A--ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTT--CATTATGGCGGATAAGAGA-CAAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTT---AT-ATGGG-GA-TG---TATCACCTG-G--CATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TATAAAA-TGCAGAAA---AATACTAACAGATTCTG--GACAATAACCTGTGGCCTGTCTTAGCTCGGTAcgtta
gi|3 : CGGTAATGCGCCTGTCCACCG-AACCCGTTCGAC-CCA-GAATTTCTTACACAGGAGCGGTA-TTACAAAATGTAATAC-----A--ATGAGCTGACC-TGCACATTGTCCG--G--ATA-TAAATGTGAT--TGAAAA-TATCTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAAAT--GATTCGTTCCGTGAAATC-CAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-A-TCGAGC---GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTT-ATTA-----TGCAAGT--A---ATTTACA-----------A----AT-GAAATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGATGGAAGGATTA-GGATT-TGG-AGAAAAAAGA-TGAAGGATGGAGGCCTGATCTCGT---T-CAGAG----CGGGCATTCCTCAA----GCTGAGT-----AC-G--AAGTCATGATCATGGGCGGCAA---T-TTAGGTTGG--GAAGGTGTTGG-GATTTTAACGCAAGTGT--AA----GGAAA-TGT-TAA-TGCTGCTA---AGTATCAGGAAATTTAA--AATGAAAA-------CCTGTTTTAGCAAGACATTTTCCTCAAAATGGA--TATT-TTTTC-AGGATGACAATGCACCCGTTCATCG-AGCTAGATCAACACAA-GAAT
gi|4 : atagtacTGCACCCGTCCATCG-AGCTAGATCAAC-ACAAGAATACGTGGC-CAGAAAT------------------CAC-----A--TTAAGATGGCC-TGCCCAA--TCAC--C--AGACTAAATATCAT--TGAAAA-TGTACGCCTATACATCAAAAGAAAACTCCAATCTC-GAACAGG----TGCAATAAA-AT--CAAGATCTGATTTGACCGAGGAAATT-CGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCTTGTATGGCTCCATTCAGAAACG--T-A-TTCAGCAA-GTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGT-AA--GTAA----TTT-ATTAT----TTTAATT-------TT--CATGTTCGTTTTTA----TT-G--ATAT-TTCAGCCGACAAAATATTG-A--TACGTTCGTCG---TCAGAGTAAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGCacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|5 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnTGTGATGCAATA-AGTATTCGGACAAGATAGCGTCATGTT----ATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGCGCTAT-----AAATAAAGTC----TTTACATGAAAA-ATTATC-TTACTTCCGTTGTTATT---TTT--AAAA--------GTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA----C-T--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CATTT--AAA--ACACGA-GA----AAAGTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAA-GTG---AAA-GAAA---TCGT-ATT-GAAATTACAAGA----GGAAGGAAAAACTATCAGA------TTTGT--GTCAGATTT-ATTG-AACATTCCCAAGTC---TGCGATTGAAGATATAAAGAAAAGGTTTGAGGTGCGAGGTTAAGTCGAAAACTTAAA--AAGAAGTGGACTGCCATC----ATCAGTT-A---CAAGGCGTGATTACCGCAAGTTGGAAAGGTTGGTGAAAAGTAATA-GGAGGGACATGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAAATAGAG----AAGTG-CCTTTAGCAAGCAGC--TGTACAG--TTCA-T------TACATAGACATAG-TTATAC-TAGGCGTGTAGCAAAGAAGAA-CTCGTAGTTCGG-GAAGTCAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATAAAGT-A--ATATTCTCAGATGA-ATCT-AAATTATGAT-T-GGTCGTGATGgcgtgactacctatatcagcattatttacccttatagcaa
gi|6 : agATT-TGGCGGAAAAGAGA-CGAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----A----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GA-TG---TATCACCTG-G--CATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAC-AAG-TTCAGAAA---AATATCAACAGATTCTG--GACAGTAACCTGTGGCCTGTCTTAGCTCGGCATTTTAT-CGAAG-GAAACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTG-AGCCCGTTCGAC-CCA-GAATTTCTTACACAGGAACGGTATT----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTCTC--G--ATA-TAAATGTGCT--TG-AAAATATTTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-ATTTTAAAAATGTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----T----TT--A---ATT--CA-----------A----AT-GAAATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtc
gi|7 : tTATA-TCTTCCAAGATGATAATGCCTCCGTGCACCG-AGCTAGGACCAC-TCA-GAGATACATGGTCAGGAACCGAA-T----------AA-ACGGATAA--ATGAGTTGGCC-AGCTC--AGTCACCGG--ACC-TTAAAATTAT--TG-AAAATGTTTGACTCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGGACAATAAAATCAA-A---CGA----TGATTGGTACCATGCGATT-TTTAACATTTGGACGGAA-ATTTCTCCTGCCTGCATTCAGCCCTTGTATAAATCAATTCCGA---AAATAA-TTTTGAAT-GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------T-AG--ATAA----ATCAATTG-----GTTATTT--ATGTATG--CA-----------T----ATAGTCACGTAGCCAGTTTACAAAAA--TG-ACCATGTCTAGTCAATTCAATGGCGA---CGTCTCCATTGTG-AC-CGAATAC-CTTTGGCA--
gi|8 : gGATGAAATA-AATATTTGGAAAAGATGGCCGCGTGTT---GAGATTTGTACATGTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAAAAAGGT----T--ATATAA----GTTGG--T-ACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTT-----TCT--TT-G-T-TGAC-ATCTG-CTTTATAAAGA---A--AATT--TAA--ACGCGGTGATTTCAA-GTGAGA----TG-GGACGAAAA---GCATATACATATAGC-----ATTCGGTAATAGAG-GGG---AAA-GAAAAGCGCGG-A----AA-CTACTCGATCAAGGGAG--AAA-CCATCAGA------TATGCTCGTCTGTCTT-GTTATAGTATTTCAAAGTG---TACGACTCAAAATAAAAAGAAAAGTTTTGAGAAGTGAGGATTTGTAGAAAACATAA---A-AAAATGGACcg
gi|9 : GG-GATGGAAACAGGAAACGGAGAC---TTTCTT-TGGTACAGTAAAAAAAAGGAAATAGACT-TTGCGCAT-GG-ACTGGCAATG--GTCAT-AT-TTTTCTGACGAGAGC--AAGTT--GATCT-CGACATGATGAGCGGGCTCAAAATA-TGGTGGACAAAAAG-CG-AGGATAGCGCTCCGACCTT---GCGTCCAAGGTAAAGGG-ACAC----GCAACCCCAAAT-----TCAGGCAAA--ATGAT-ATGGA-AACTGAGATGT----T--GGAAACGGGGTTGG-AA---CATTTAAG----AAAATAATGGAAA-TAT-AACTTGCTGAAAAAGAATATCAGGACATTTTATTGAGGAAAATTTATGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA
Alignments
lowQualScore : 2222 111 333333333 111 22222 22222222 1 2222 1 44444444444444444444 22222 1 1 222222222 111111111111 1 1111111 222222 111 222222222222222 111 11111 11111 1111 11 222222 11 111 1 111 2222 33333333 1 333333333333 111 11111 1 22 2222 1 2222222 22 222222 1111 11 111 111 1 11111111 1111 2222 111111 1111 11111 1111 333333333 11111111 444444444444444444444444 111 1111 111 1 1 11 1 33333333333333333333333333333 11 1111111 1 2222222 22 1 1111 1111111 2222222222222 1111 22222 55555555555555555555555555555 111
lowQualScore : 8 3 8 0 0 2222 1 444 0 222222222 8 444 0 3 00000 66666666 3 0 1 6666 0 77777777777777777777 2 44444 0 1 0 777777777 6 6 6 3 6 6 3 333333333333 99 3 6 9999999 666666 6 888 444444444444444 66 8 8 444 8 66666 11111 8 7777 1 11 0 1 333333 11 3 000 0 0 3 777 44 6 1 44 66 1 0 0 1 1 3 8888 33333333 6 7 7 2 2 0 222222222222 777 55555 0 33 3 3 1111 0 11 8888888 33 3 888888 4444 00 8 2 3 3 8 11 444 444 0 8 3 1 1 77777777 5 8 0000 0000 0 222222 0 8 8 1 1 3 8888 6 5 6 7 1 1 33333 4444 6 666666666 99 88888888 99 7 6 000000000000000000000000 1 6 000 2 1 4444 1 6 6 6 1 111 1 44 1 99 1 1 9 0 1 3 1 0 5 88 99 8 0 5 1 1 0 5 5 1 66666666666666666666666666666 6 1 55 8888888 6 1 99 5 7 1 7 5 1 1 1 1 6 1 1111111 6 88 1 44 6 333 2 3 2 0 11 0 1 4 3 2 8888 5 0 888 1 2 1 6666666 66 1111111111111 2222 5 00000 1 00000000000000000000000000000 6 3 1 7 1 1 33 1 888 000 1 0 2 66 5 5 1 77
lowQualScore : . . . . . .... . ... . ......... . ... . . ..... ........ . . . .... . .................... . ..... . . . ......... . . . . . . . ............ .. . . ....... ...... . ... ............... .. . . ... . ..... ..... . .... . .. . . ...... .. . ... . . . ... .. . . .. .. . . . . . . .... ........ . . . . . . ............ ... ..... . .. . . .... . .. ....... .. . ...... .... .. . . . . . .. ... ... . . . . . ........ . . .... .... . ...... . . . . . . .... . . . . . . ..... .... . ......... .. ........ .. . . ........................ . . ... . . .... . . . . . ... . .. . .. . . . . . . . . . .. .. . . . . . . . . . ............................. . . .. ....... . . .. . . . . . . . . . . . ....... . .. . .. . ... . . . . .. . . . . . .... . . ... . . . ....... .. ............. .... . ..... . ............................. . . . . . . .. . ... ... . . . .. . . . ..
lowQualScore : 0 2 2 8 6 6666 0 000 8 000000000 0 000 8 8 00000 22222222 2 0 0 0000 5 00000000000000000000 5 88888 0 0 0 555555555 7 7 7 5 7 7 2 888888888888 22 3 7 2222222 333333 7 333 222222222222222 44 0 0 000 0 66666 44444 0 0000 0 00 8 4 000000 00 2 222 0 2 2 555 22 5 0 55 88 0 2 2 0 0 2 3333 33333333 7 3 3 5 5 0 888888888888 555 88888 0 88 2 2 2222 0 88 2222222 88 2 888888 8888 88 8 0 2 2 0 66 000 222 0 0 8 4 0 22222222 0 0 4444 6666 8 000000 8 0 0 4 0 2 6666 7 2 7 3 0 0 00000 2222 7 222222222 55 33333333 22 3 7 333333333333333333333333 0 7 222 5 7 2222 0 7 7 7 0 777 7 77 0 22 0 0 3 8 4 2 0 0 5 00 44 0 8 7 3 0 4 7 7 7 33333333333333333333333333333 7 0 33 3333333 7 0 22 5 3 0 8 2 0 0 0 0 7 0 3333333 7 77 0 77 7 555 5 3 2 7 77 7 0 5 4 2 2222 0 2 555 0 0 0 2222222 99 5555555555555 1111 7 00000 4 77777777777777777777777777777 7 5 7 3 0 0 22 0 333 000 7 1 7 00 0 0 0 99
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCANCT--G-----G-ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
Reference ( family-3842 ) : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCACCT--G-----N-ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
gi|1 : TGTGATGCAATAGAGTATT--GACAAGATGACGTTATGTT---TATACTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTA----T--ACATAAAAA-AATATCGT-ACTTCCGTTGTTATT---TT---AAAA--------GTGCCATCA-G-TG-TCATATGAAAT-CATGTGA------C--TT-G-T-TGTC-GTCTG-CTTTGTTT-CA---A-CAATG--AAA--AC-CGA-GA----AA-GTGA-A----TG-GGTCGAAA----GAAAA-------AGA-----ACTCG-T-CT-GAG-GTG---AAA-GA-----TCGT-ATT-GAA-TTACTAGA----GAAGG--AAAACTATCAGA------TTTGT--GTCAGATTTTATTG-AACATTCCCA-GTC---TACGATTGGATATATAAG---AAGGTTTAAGGTGCAAGGTTCAGTCGAAAACTTAATAAGAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTGAAG--GTTGGT-AAAAGTAATA-GGAGG-----AC--TT---TGACAGATATTACT-A-A-CAA-TTTAATG--AAATAG-G----AAGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTT--TAC-TAGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAA---GAAAC--GTTTATCGTGGTGCAG-AG-AAAAAGGCATTTGACTGTTG---AC-GACACTGG-AAT-AAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCACGAGTTC-ATATT-TGGCGGAAGAGAGA-CG-AGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC---------GCC-TGT-----TTTG---AGTT-TGAT-ATGGG-GATTGT-TCACCT--G-----C-ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAT-AAA-TGCAGAAA---AATATCA-AAGATTCTG--GACAATAA-CTGTGGCCTGTC-TAGCTCGGCA-TTTAC-CGAAG-GAAACTACA-TTTTC-AAGACGATAATGCGCCTGTCCACCG--GCCCGTTCGAC-CCA-GAATTTCTTGCACAGGAAC-GTA-T----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTC-C--T--ATA-TAAATGTGAT--TG--AAATATATGG-TGCATATTAAACGGAAGCTACAAGCAC-GATCCG------AGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCCTATAC-TATCGATTCCCAGGCGAAT-A-TTGAGT---GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATTA-CA-----------A----AT-GAAGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG---CGAAGG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|10 : TGTGATGCAATA-A-TATTAAGACAAGATGGCGGCATGTT---CAACTTGGCG---GTAT---------GCACTCAAGAAAAACG-TGTGGTAT-----AAATAAAATCAATAT--ACATAAAAATGACAT--T-ACTTCCGT-GTTATTCCCTTGGGAAAC--------TTG-CATAA-ACTGTTCATAAAAAATCCATGTGACTGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTTACATTGA-CAA
gi|11 : agCTTTCGTTT---CAAACGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACcattttaaaatac
gi|12 : tttgaaatacaAAGTTTGTATGGATTCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGTCCAAAAGGTCACCTCACA-------AAG--TAT-------TGAGTTGTAAATACGTC-ATTT-----TTTTATcaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|13 : ATGTGA----TAC--TT-GGT-TGTC-GTCTG-CT--GTTTACA---AACAAGGGGAAA--AT-GGA--A----AA-GTTAAAAACATG-GGTCGAAAA---GGAAA-------Agttcgtttttattaagaatattgatgcgttcctcgtcagtgtaaaca
gi|14 : CTATATTCAAAGCTTATATGTCTCAATTCCGAGGTGA---A-TTCGACAA-GTAAGAAAATCAAAGGGACATGCAATA-------AAA--TAT-------T-acaaataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATA-G-AG------ACAGTT---TAACAGTTATTACTAA-A-AAA-ATTAATGA-AAATAGAG----AAGTGCCTATTAGCAAGC-GAGCTGTACAGT-TTCAAT------TACATAGACATAgattttgtggtgtttgaattttgcgtttacgtgttt
gi|16 : ggttaA--AT-TGA-GA----A----GA-A----TGTGGTCAAAAAAATGGCAA-------AAATCGAGACTCTGTACT-GAAAGTG---AAAAGAAA---TCGT-ATTCAAA-TTTCTAGT----GGATA--AAAACCATCAAG------TTTGT--
gi|17 : GTCATGCAAAA-AGTATTCGT-TAAAATGGCGTCACGTTACCTTTGTTTACA---GT------------CA-CC---GCATACTTTG-GCTGT-----AAAT
gi|19 : actacagaCGTCGCCGTTGTA-AC-CGAATAC-TTTTGGCA--
gi|2 : aATGTGA----TAC--TTAG-T-TA---GTCTG-CTT-ATTTACA---A-GCAGG--AAACAAT-TGA-GA----A--GTAAAACA--TG-GGTCGAAAAA--GGAAA-------GGA-----GATGGG--CT-TAG-ATGTCCAAA--AGG---TCATTGTG-GAG-TTATTACA----GGGTG--GATACAGTCGGAGAAAAATTAGT--G--AGAT---GTTG-AAGTTGCCCAAATCAAGTGTTATTGA-CGTTTGCAAAAAATTTCTGAATCG---GGATCAGTTGAAAACAAACCGAGAAGTGGTCGGCCTCCGAAAATCA----AAC-CCCGG---GATTATCGGAAGTTGGAGAGGATTGTGAAAC-TAATC-G-CAG-----AT-GTTCACTGTCGGATATAACT-GCA-AAA-TTTAACG--AAG-AGAAGACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAA-T--TACAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGA---GAAACCGACTTGCC-TGGTGTCG-GGGGAAAAGACGATGGACTGT-----A--GAGACTGG-AA--ACGT-GTGATATTCTCAGATGA-GC--AAAATCATGAA-TAGGACATGACGAAAGAGTAA-GGATT-TGGAGGAAAAAAGAACGAAGGATGGAGGCCCGATCTCGT---T-CAACA----CGGC-ATTC----C----GCAA-GCAAAAGTACG--AAGTCATGAT-ATGGG----TGT-TTTGTT--G-----GGAGGGTATTGGGAA--CTTTAACGCCTGTGGAA----GGAAAATAT-TAA-TGCTGCTA---A-TATCAGGACATTTTA--GAGGAAAACCTGTGGCCAGTTTTAGCAAGACATTCCCT-CAAAATGGA--TACT-TTTTT-AGG-CGACAACGCGCCCGTCCATCGGAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAACGCTA-T----------AA-AC-----TGTATAAGCTGGCCCTGCCCAA--TCAC--GCGACA-TAA---TAATAATGAAAAATGTATGGAT-CACATAAAAAGAAAACTCCAATCTC-G--T--A----CAGGTGCAATAAATCAAGATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTTTGTATGGCTCCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------G-AATTGTAA----GTA-ATTAATTTTTTTAATTCTAT--GTT--CG-----------ATTTTGT-TAAA-AT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG---TCAGTGTAAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--cgtttct
gi|3 : TAG-T--TAC-CAGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTAG---ACGGACACTGG-AATGAAAT-A--ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTT--CATTATGGCGGATAAGAGA-CAAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTT---AT-ATGGG-GA-TGTATCACCTG-G-----C-ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TATAAAA-TGCAGAAA---AATACTAACAGATTCTG--GACAATAACCTGTGGCCTGTCTTAGCTCGGTAcgtta
gi|3 : CGGTAATGCGCCTGTCCACCG-AACCCGTTCGAC-CCA-GAATTTCTTACACAGGAGCGGTA-TTACAAAATGTAATAC-----A--ATGAGCTGACC-TGCACATTGTCCG--G--ATA-TAAATGTGAT--TGAAAA-TATCTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAAAT--GATTCGTTCCGTGAAATC-CAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-A-TCGAGC---GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTT-ATTA-----TGCAAGT--A---ATTTACA-----------A----AT-GAAATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGATGGAAGGATTA-GGATT-TGG-AGAAAAAAGA-TGAAGGATGGAGGCCTGATCTCGT---T-CAGAG----CGGGCATTCCTCAA----GCTGAGT-----AC-G--AAGTCATGATCATGGGCGGCAAT-TTAGGTTGG-----G-AAGGTGTTGG-GATTTTAACGCAAGTGT--AA----GGAAA-TGT-TAA-TGCTGCTA---AGTATCAGGAAATTTAA--AATGAAAA-------CCTGTTTTAGCAAGACATTTTCCTCAAAATGGA--TATT-TTTTC-AGGATGACAATGCACCCGTTCATCG-AGCTAGATCAACACAA-GAAT
gi|4 : atagtacTGCACCCGTCCATCG-AGCTAGATCAAC-ACAAGAATACGTGGC-CAGAAAT------------------CAC-----A--TTAAGATGGCC-TGCCCAA--TCAC--C--AGACTAAATATCAT--TGAAAA-TGTACGCCTATACATCAAAAGAAAACTCCAATCTC-GAACAGG----TGCAATAAA-AT--CAAGATCTGATTTGACCGAGGAAATT-CGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCTTGTATGGCTCCATTCAGAAACG--T-A-TTCAGCAA-GTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGT-AA--GTAA----TTT-ATTAT----TTTAATT-------TT--CATGTTCGTTTTTA----TT-G--ATAT-TTCAGCCGACAAAATATTG-A--TACGTTCGTCG---TCAGAGTAAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGCacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|5 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnTGTGATGCAATA-AGTATTCGGACAAGATAGCGTCATGTT----ATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGCGCTAT-----AAATAAAGTC----TTTACATGAAAA-ATTATC-TTACTTCCGTTGTTATT---TTT--AAAA--------GTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA----C-T--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CATTT--AAA--ACACGA-GA----AAAGTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAA-GTG---AAA-GAAA---TCGT-ATT-GAAATTACAAGA----GGAAGGAAAAACTATCAGA------TTTGT--GTCAGATTT-ATTG-AACATTCCCAAGTC---TGCGATTGAAGATATAAAGAAAAGGTTTGAGGTGCGAGGTTAAGTCGAAAACTTAAAAAGAAGTGGACTGCCATC----ATCAGTT-A---CAAGGCGTGATTACCGCAAGTTGGAAAGGTTGGTGAAAAGTAATAGG-AGGGACATGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAAATAGAG----AAGTG-CCTTTAGCAAGCAGC--TGTACAG--TTC-AT------TACATAGACATAG-TTATAC-TAGGCGTGTAGCAAAGAAG-AACTCGTAGTTCGG-GAAGTCAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATAAAGT-A--ATATTCTCAGATGA-ATCT-AAATTATGAT-T-GGTCGTGATGgcgtgactacctatatcagcattatttacccttatagcaa
gi|6 : agATT-TGGCGGAAAAGAGA-CGAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----A----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GA-TGTATCACCT--G-----GCATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAC-AAG-TTCAGAAA---AATATCAACAGATTCTG--GACAGTAACCTGTGGCCTGTCTTAGCTCGGCATTTTAT-CGAAG-GAAACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTG-AGCCCGTTCGAC-CCA-GAATTTCTTACACAGGAACGGTATT----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTCTC--G--ATA-TAAATGTGCT--TG-AAAATATTTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-ATTTTAAAAATGTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----T----TT--A---ATT--CA-----------A----AT-GAAATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtc
gi|7 : tTATA-TCTTCCAAGATGATAATGCCTCCGTGCACCG-AGCTAGGACCAC-TCA-GAGATACATGGTCAGGAACCGAA-T----------AA-ACGGATAA--ATGAGTTGGCC-AGCTC--AGTCACCGG--ACC-TTAAAATTAT--TG-AAAATGTTTGACTCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGGACAATAAAATCAA-A---CGA----TGATTGGTACCATGCGATT-TTTAACATTTGGACGGAA-ATTTCTCCTGCCTGCATTCAGCCCTTGTATAAATCAATTCCGA---AAATAA-TTTTGAAT-GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------T-AG--ATAA----ATCAATTG-----GTTATTT--ATGTATG--CA-----------T----ATAGTCACGTAGCCAGTTTACAAAAA--TG-ACCATGTCTAGTCAATTCAATGGCGA---CGTCTCCATTGTG-AC-CGAATAC-CTTTGGCA--
gi|8 : gGATGAAATA-AATATTTGGAAAAGATGGCCGCGTGTT---GAGATTTGTACATGTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAAAAAGGT----T--ATATAA----GTTGG--T-ACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTT-----TCT--TT-G-T-TGAC-ATCTG-CTTTATAAAGA---A--AATT--TAA--ACGCGGTGATTTCAA-GTGAGA----TG-GGACGAAAA---GCATATACATATAGC-----ATTCGGTAATAGAG-GGG---AAA-GAAAAGCGCGG-A----AA-CTACTCGATCAAGGGAG--AAA-CCATCAGA------TATGCTCGTCTGTCTT-GTTATAGTATTTCAAAGTG---TACGACTCAAAATAAAAAGAAAAGTTTTGAGAAGTGAGGATTTGTAGAAAACATAAAA--AAATGGACcg
gi|9 : GG-GATGGAAACAGGAAACGGAGAC---TTTCTT-TGGTACAGTAAAAAAAAGGAAATAGACT-TTGCGCAT-GG-ACTGGCAATG--GTCAT-AT-TTTTCTGACGAGAGC--AAGTT--GATCT-CGACATGATGAGCGGGCTCAAAATA-TGGTGGACAAAAAG-CG-AGGATAGCGCTCCGACCTT---GCGTCCAAGGTAAAGGG-ACAC----GCAACCCCAAAT-----TCAGGCAAA--ATGAT-ATGGA-AACTG----AGAT--GTTGGAA-ACGGGGTTGG-AA---CATTTAAG----AAAATAATGGAAA-TAT-AACTTGCTGAAAAAGAATATCAGGACATTTTATTGAGGAAAATTTATGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA
Alignments
lowQualScore : 2222 111 333333333 111 22222 22222222 1 2222 1 44444444444444444444 22222 1 1 222222222 111111111111 1 1111111 222222 111 222222222222222 111 11111 11111 1111 11 222222 11 111 1 111 2222 33333333 1 333333333333 111 11111 1 22 2222 1 2222222 22 222222 1111 11 111 111 1 11111111 1111 2222 111111 1111 11111 1111 333333333 11111111 33333333333333333333333 111 1111 111 1 1 11 1 33333333333333333333333333333 11 1111111 1 2222222 22 1 1111 1111111 2222222222222 1111 22222 55555555555555555555555555555 111
lowQualScore : 8 3 8 0 0 2222 1 444 0 222222222 8 444 0 3 00000 66666666 3 0 1 6666 0 77777777777777777777 2 44444 0 1 0 777777777 6 6 6 3 6 6 3 333333333333 99 3 6 9999999 666666 6 888 444444444444444 66 8 8 444 8 66666 11111 8 7777 1 11 0 1 333333 11 3 000 0 0 3 777 44 6 1 44 66 1 0 0 1 1 3 8888 33333333 6 7 7 2 2 0 222222222222 777 55555 0 33 3 3 1111 0 11 8888888 33 3 888888 4444 00 8 2 3 3 8 11 444 444 0 8 3 1 1 77777777 5 8 0000 0000 0 222222 0 8 8 1 1 3 8888 6 5 6 7 1 1 33333 4444 6 666666666 99 88888888 99 7 6 44444444444444444444444 1 6 000 2 1 4444 1 6 6 6 1 111 1 44 1 99 1 1 9 0 1 3 1 0 5 88 99 8 0 5 1 1 0 5 5 1 66666666666666666666666666666 6 1 55 8888888 6 1 99 5 7 1 7 5 1 1 1 1 6 1 1111111 6 88 1 44 6 333 2 3 2 0 11 0 1 4 3 2 8888 5 0 888 1 2 1 6666666 66 1111111111111 2222 5 00000 1 00000000000000000000000000000 6 3 1 7 1 1 33 1 888 000 1 0 2 66 5 5 1 77
lowQualScore : . . . . . .... . ... . ......... . ... . . ..... ........ . . . .... . .................... . ..... . . . ......... . . . . . . . ............ .. . . ....... ...... . ... ............... .. . . ... . ..... ..... . .... . .. . . ...... .. . ... . . . ... .. . . .. .. . . . . . . .... ........ . . . . . . ............ ... ..... . .. . . .... . .. ....... .. . ...... .... .. . . . . . .. ... ... . . . . . ........ . . .... .... . ...... . . . . . . .... . . . . . . ..... .... . ......... .. ........ .. . . ....................... . . ... . . .... . . . . . ... . .. . .. . . . . . . . . . .. .. . . . . . . . . . ............................. . . .. ....... . . .. . . . . . . . . . . . ....... . .. . .. . ... . . . . .. . . . . . .... . . ... . . . ....... .. ............. .... . ..... . ............................. . . . . . . .. . ... ... . . . .. . . . ..
lowQualScore : 0 2 2 8 6 6666 0 000 8 000000000 0 000 8 8 00000 22222222 2 0 0 0000 5 00000000000000000000 5 88888 0 0 0 555555555 7 7 7 5 7 7 2 888888888888 22 3 7 2222222 333333 7 333 222222222222222 44 0 0 000 0 66666 44444 0 0000 0 00 8 4 000000 00 2 222 0 2 2 555 22 5 0 55 88 0 2 2 0 0 2 3333 33333333 7 3 3 5 5 0 888888888888 555 88888 0 88 2 2 2222 0 88 2222222 88 2 888888 8888 88 8 0 2 2 0 66 000 222 0 0 8 4 0 22222222 0 0 4444 6666 8 000000 8 0 0 4 0 2 6666 7 2 7 3 0 0 00000 2222 7 222222222 55 33333333 22 3 7 77777777777777777777777 0 7 222 5 7 2222 0 7 7 7 0 777 7 77 0 22 0 0 3 8 4 2 0 0 5 00 44 0 8 7 3 0 4 7 7 7 33333333333333333333333333333 7 0 33 3333333 7 0 22 5 3 0 8 2 0 0 0 0 7 0 3333333 7 77 0 77 7 555 5 3 2 7 77 7 0 5 4 2 2222 0 2 555 0 0 0 2222222 99 5555555555555 1111 7 00000 4 77777777777777777777777777777 7 5 7 3 0 0 22 0 333 000 7 1 7 00 0 0 0 99
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCA---NCT--GG--ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
Reference ( family-3842 ) : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCA---NCT--GG--ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
gi|1 : TGTGATGCAATAGAGTATT--GACAAGATGACGTTATGTT---TATACTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTA----T--ACATAAAAA-AATATCGT-ACTTCCGTTGTTATT---TT---AAAA--------GTGCCATCA-G-TG-TCATATGAAAT-CATGTGA------C--TT-G-T-TGTC-GTCTG-CTTTGTTT-CA---A-CAATG--AAA--AC-CGA-GA----AA-GTGA-A----TG-GGTCGAAA----GAAAA-------AGA-----ACTCG-T-CT-GAG-GTG---AAA-GA-----TCGT-ATT-GAA-TTACTAGA----GAAGG--AAAACTATCAGA------TTTGT--GTCAGATTTTATTG-AACATTCCCA-GTC---TACGATTGGATATATAAG---AAGGTTTAAGGTGCAAGGTTCAGTCGAAAACTTAATAAGAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTGAAG--GTTGGT-AAAAGTAATA-GGAGG-----AC--TT---TGACAGATATTACT-A-A-CAA-TTTAATG--AAATAG-G----AAGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTT--TAC-TAGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAA---GAAAC--GTTTATCGTGGTGCAG-AG-AAAAAGGCATTTGACTGTTG---AC-GACACTGG-AAT-AAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCACGAGTTC-ATATT-TGGCGGAAGAGAGA-CG-AGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC---------GCC-TGT-----TTTG---AGTT-TGAT-ATGGG-GATTGT-TCA---CCT--GC--ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAT-AAA-TGCAGAAA---AATATCA-AAGATTCTG--GACAATAA-CTGTGGCCTGTC-TAGCTCGGCA-TTTAC-CGAAG-GAAACTACA-TTTTC-AAGACGATAATGCGCCTGTCCACCG--GCCCGTTCGAC-CCA-GAATTTCTTGCACAGGAAC-GTA-T----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTC-C--T--ATA-TAAATGTGAT--TG--AAATATATGG-TGCATATTAAACGGAAGCTACAAGCAC-GATCCG------AGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCCTATAC-TATCGATTCCCAGGCGAAT-A-TTGAGT---GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATTA-CA-----------A----AT-GAAGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG---CGAAGG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|10 : TGTGATGCAATA-A-TATTAAGACAAGATGGCGGCATGTT---CAACTTGGCG---GTAT---------GCACTCAAGAAAAACG-TGTGGTAT-----AAATAAAATCAATAT--ACATAAAAATGACAT--T-ACTTCCGT-GTTATTCCCTTGGGAAAC--------TTG-CATAA-ACTGTTCATAAAAAATCCATGTGACTGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTTACATTGA-CAA
gi|11 : agCTTTCGTTT---CAAACGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACcattttaaaatac
gi|12 : tttgaaatacaAAGTTTGTATGGATTCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGTCCAAAAGGTCACCTCACA-------AAG--TAT-------TGAGTTGTAAATACGTC-ATTT-----TTTTATcaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|13 : ATGTGA----TAC--TT-GGT-TGTC-GTCTG-CT--GTTTACA---AACAAGGGGAAA--AT-GGA--A----AA-GTTAAAAACATG-GGTCGAAAA---GGAAA-------Agttcgtttttattaagaatattgatgcgttcctcgtcagtgtaaaca
gi|14 : CTATATTCAAAGCTTATATGTCTCAATTCCGAGGTGA---A-TTCGACAA-GTAAGAAAATCAAAGGGACATGCAATA-------AAA--TAT-------T-acaaataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATA-G-AG------ACAGTT---TAACAGTTATTACTAA-A-AAA-ATTAATGA-AAATAGAG----AAGTGCCTATTAGCAAGC-GAGCTGTACAGT-TTCAAT------TACATAGACATAgattttgtggtgtttgaattttgcgtttacgtgttt
gi|16 : ggttaA--AT-TGA-GA----A----GA-A----TGTGGTCAAAAAAATGGCAA-------AAATCGAGACTCTGTACT-GAAAGTG---AAAAGAAA---TCGT-ATTCAAA-TTTCTAGT----GGATA--AAAACCATCAAG------TTTGT--
gi|17 : GTCATGCAAAA-AGTATTCGT-TAAAATGGCGTCACGTTACCTTTGTTTACA---GT------------CA-CC---GCATACTTTG-GCTGT-----AAAT
gi|19 : actacagaCGTCGCCGTTGTA-AC-CGAATAC-TTTTGGCA--
gi|2 : aATGTGA----TAC--TTAG-T-TA---GTCTG-CTT-ATTTACA---A-GCAGG--AAACAAT-TGA-GA----A--GTAAAACA--TG-GGTCGAAAAA--GGAAA-------GGA-----GATGGG--CT-TAG-ATGTCCAAA--AGG---TCATTGTG-GAG-TTATTACA----GGGTG--GATACAGTCGGAGAAAAATTAGT--G--AGAT---GTTG-AAGTTGCCCAAATCAAGTGTTATTGA-CGTTTGCAAAAAATTTCTGAATCG---GGATCAGTTGAAAACAAACCGAGAAGTGGTCGGCCTCCGAAAATCA----AAC-CCCGG---GATTATCGGAAGTTGGAGAGGATTGTGAAAC-TAATC-G-CAG-----AT-GTTCACTGTCGGATATAACT-GCA-AAA-TTTAACG--AAG-AGAAGACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAA-T--TACAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGA---GAAACCGACTTGCC-TGGTGTCG-GGGGAAAAGACGATGGACTGT-----A--GAGACTGG-AA--ACGT-GTGATATTCTCAGATGA-GC--AAAATCATGAA-TAGGACATGACGAAAGAGTAA-GGATT-TGGAGGAAAAAAGAACGAAGGATGGAGGCCCGATCTCGT---T-CAACA----CGGC-ATTC----C----GCAA-GCAAAAGTACG--AAGTCATGAT-ATGGG----TGT-TTT---GTT--GGG-AGGGTATTGGGAA--CTTTAACGCCTGTGGAA----GGAAAATAT-TAA-TGCTGCTA---A-TATCAGGACATTTTA--GAGGAAAACCTGTGGCCAGTTTTAGCAAGACATTCCCT-CAAAATGGA--TACT-TTTTT-AGG-CGACAACGCGCCCGTCCATCGGAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAACGCTA-T----------AA-AC-----TGTATAAGCTGGCCCTGCCCAA--TCAC--GCGACA-TAA---TAATAATGAAAAATGTATGGAT-CACATAAAAAGAAAACTCCAATCTC-G--T--A----CAGGTGCAATAAATCAAGATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTTTGTATGGCTCCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------G-AATTGTAA----GTA-ATTAATTTTTTTAATTCTAT--GTT--CG-----------ATTTTGT-TAAA-AT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG---TCAGTGTAAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--cgtttct
gi|3 : TAG-T--TAC-CAGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTAG---ACGGACACTGG-AATGAAAT-A--ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTT--CATTATGGCGGATAAGAGA-CAAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTT---AT-ATGGG-GA-TGTATCA---CCT--GGC-ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TATAAAA-TGCAGAAA---AATACTAACAGATTCTG--GACAATAACCTGTGGCCTGTCTTAGCTCGGTAcgtta
gi|3 : CGGTAATGCGCCTGTCCACCG-AACCCGTTCGAC-CCA-GAATTTCTTACACAGGAGCGGTA-TTACAAAATGTAATAC-----A--ATGAGCTGACC-TGCACATTGTCCG--G--ATA-TAAATGTGAT--TGAAAA-TATCTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAAAT--GATTCGTTCCGTGAAATC-CAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-A-TCGAGC---GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTT-ATTA-----TGCAAGT--A---ATTTACA-----------A----AT-GAAATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGATGGAAGGATTA-GGATT-TGG-AGAAAAAAGA-TGAAGGATGGAGGCCTGATCTCGT---T-CAGAG----CGGGCATTCCTCAA----GCTGAGT-----AC-G--AAGTCATGATCATGGGCGGCAAT-TTA---GGTTGGG--AAGGTGTTGG-GATTTTAACGCAAGTGT--AA----GGAAA-TGT-TAA-TGCTGCTA---AGTATCAGGAAATTTAA--AATGAAAA-------CCTGTTTTAGCAAGACATTTTCCTCAAAATGGA--TATT-TTTTC-AGGATGACAATGCACCCGTTCATCG-AGCTAGATCAACACAA-GAAT
gi|4 : atagtacTGCACCCGTCCATCG-AGCTAGATCAAC-ACAAGAATACGTGGC-CAGAAAT------------------CAC-----A--TTAAGATGGCC-TGCCCAA--TCAC--C--AGACTAAATATCAT--TGAAAA-TGTACGCCTATACATCAAAAGAAAACTCCAATCTC-GAACAGG----TGCAATAAA-AT--CAAGATCTGATTTGACCGAGGAAATT-CGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCTTGTATGGCTCCATTCAGAAACG--T-A-TTCAGCAA-GTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGT-AA--GTAA----TTT-ATTAT----TTTAATT-------TT--CATGTTCGTTTTTA----TT-G--ATAT-TTCAGCCGACAAAATATTG-A--TACGTTCGTCG---TCAGAGTAAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGCacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|5 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnTGTGATGCAATA-AGTATTCGGACAAGATAGCGTCATGTT----ATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGCGCTAT-----AAATAAAGTC----TTTACATGAAAA-ATTATC-TTACTTCCGTTGTTATT---TTT--AAAA--------GTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA----C-T--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CATTT--AAA--ACACGA-GA----AAAGTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAA-GTG---AAA-GAAA---TCGT-ATT-GAAATTACAAGA----GGAAGGAAAAACTATCAGA------TTTGT--GTCAGATTT-ATTG-AACATTCCCAAGTC---TGCGATTGAAGATATAAAGAAAAGGTTTGAGGTGCGAGGTTAAGTCGAAAACTTAAAAAGAAGTGGACTGCCATC----ATCAGTT-A---CAAGGCGTGATTACCGCAAGTTGGAAAGGTTGGTGAAAAGTAATAGG-AGGGACATGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAAATAGAG----AAGTG-CCTTTAGCAAGCAGC--TGTACAG--TTC-AT------TACATAGACATAG-TTATAC-TAGGCGTGTAGCAAAGAAG-AACTCGTAGTTCGG-GAAGTCAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATAAAGT-A--ATATTCTCAGATGA-ATCT-AAATTATGAT-T-GGTCGTGATGgcgtgactacctatatcagcattatttacccttatagcaa
gi|6 : agATT-TGGCGGAAAAGAGA-CGAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----A----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GA-TGTATCA---CCT--GGC-ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAC-AAG-TTCAGAAA---AATATCAACAGATTCTG--GACAGTAACCTGTGGCCTGTCTTAGCTCGGCATTTTAT-CGAAG-GAAACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTG-AGCCCGTTCGAC-CCA-GAATTTCTTACACAGGAACGGTATT----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTCTC--G--ATA-TAAATGTGCT--TG-AAAATATTTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-ATTTTAAAAATGTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----T----TT--A---ATT--CA-----------A----AT-GAAATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtc
gi|7 : tTATA-TCTTCCAAGATGATAATGCCTCCGTGCACCG-AGCTAGGACCAC-TCA-GAGATACATGGTCAGGAACCGAA-T----------AA-ACGGATAA--ATGAGTTGGCC-AGCTC--AGTCACCGG--ACC-TTAAAATTAT--TG-AAAATGTTTGACTCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGGACAATAAAATCAA-A---CGA----TGATTGGTACCATGCGATT-TTTAACATTTGGACGGAA-ATTTCTCCTGCCTGCATTCAGCCCTTGTATAAATCAATTCCGA---AAATAA-TTTTGAAT-GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------T-AG--ATAA----ATCAATTG-----GTTATTT--ATGTATG--CA-----------T----ATAGTCACGTAGCCAGTTTACAAAAA--TG-ACCATGTCTAGTCAATTCAATGGCGA---CGTCTCCATTGTG-AC-CGAATAC-CTTTGGCA--
gi|8 : gGATGAAATA-AATATTTGGAAAAGATGGCCGCGTGTT---GAGATTTGTACATGTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAAAAAGGT----T--ATATAA----GTTGG--T-ACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTT-----TCT--TT-G-T-TGAC-ATCTG-CTTTATAAAGA---A--AATT--TAA--ACGCGGTGATTTCAA-GTGAGA----TG-GGACGAAAA---GCATATACATATAGC-----ATTCGGTAATAGAG-GGG---AAA-GAAAAGCGCGG-A----AA-CTACTCGATCAAGGGAG--AAA-CCATCAGA------TATGCTCGTCTGTCTT-GTTATAGTATTTCAAAGTG---TACGACTCAAAATAAAAAGAAAAGTTTTGAGAAGTGAGGATTTGTAGAAAACATAAAA--AAATGGACcg
gi|9 : GG-GATGGAAACAGGAAACGGAGAC---TTTCTT-TGGTACAGTAAAAAAAAGGAAATAGACT-TTGCGCAT-GG-ACTGGCAATG--GTCAT-AT-TTTTCTGACGAGAGC--AAGTT--GATCT-CGACATGATGAGCGGGCTCAAAATA-TGGTGGACAAAAAG-CG-AGGATAGCGCTCCGACCTT---GCGTCCAAGGTAAAGGG-ACAC----GCAACCCCAAAT-----TCAGGCAAA--ATGAT-ATGGA-AACTG----AGATGTT--GGAAACGGGGTTGG-AA---CATTTAAG----AAAATAATGGAAA-TAT-AACTTGCTGAAAAAGAATATCAGGACATTTTATTGAGGAAAATTTATGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA
Alignments
lowQualScore : 2222 111 333333333 111 22222 22222222 1 2222 1 44444444444444444444 22222 1 1 222222222 111111111111 1 1111111 222222 111 222222222222222 111 11111 11111 1111 11 222222 11 111 1 111 2222 33333333 1 333333333333 111 11111 1 22 2222 1 2222222 22 222222 1111 11 111 111 1 11111111 1111 2222 111111 1111 11111 1111 333333333 11111111 33333333333333333333333 111 1111 111 1 1 11 1 33333333333333333333333333333 11 1111111 1 2222222 22 1 1111 1111111 2222222222222 1111 22222 55555555555555555555555555555 111
lowQualScore : 8 3 8 0 0 2222 1 444 0 222222222 8 444 0 3 00000 66666666 3 0 1 6666 0 77777777777777777777 2 44444 0 1 0 777777777 6 6 6 3 6 6 3 333333333333 99 3 6 9999999 666666 6 888 444444444444444 66 8 8 444 8 66666 11111 8 7777 1 11 0 1 333333 11 3 000 0 0 3 777 44 6 1 44 66 1 0 0 1 1 3 8888 33333333 6 7 7 2 2 0 222222222222 777 55555 0 33 3 3 1111 0 11 8888888 33 3 888888 4444 00 8 2 3 3 8 11 444 444 0 8 3 1 1 77777777 5 8 0000 0000 0 222222 0 8 8 1 1 3 8888 6 5 6 7 1 1 33333 4444 6 666666666 99 88888888 99 7 6 44444444444444444444444 1 6 000 2 1 4444 1 6 6 6 1 111 1 44 1 99 1 1 9 0 1 3 1 0 5 88 99 8 0 5 1 1 0 5 5 1 66666666666666666666666666666 6 1 55 8888888 6 1 99 5 7 1 7 5 1 1 1 1 6 1 1111111 6 88 1 44 6 333 2 3 2 0 11 0 1 4 3 2 8888 5 0 888 1 2 1 6666666 66 1111111111111 2222 5 00000 1 00000000000000000000000000000 6 3 1 7 1 1 33 1 888 000 1 0 2 66 5 5 1 77
lowQualScore : . . . . . .... . ... . ......... . ... . . ..... ........ . . . .... . .................... . ..... . . . ......... . . . . . . . ............ .. . . ....... ...... . ... ............... .. . . ... . ..... ..... . .... . .. . . ...... .. . ... . . . ... .. . . .. .. . . . . . . .... ........ . . . . . . ............ ... ..... . .. . . .... . .. ....... .. . ...... .... .. . . . . . .. ... ... . . . . . ........ . . .... .... . ...... . . . . . . .... . . . . . . ..... .... . ......... .. ........ .. . . ....................... . . ... . . .... . . . . . ... . .. . .. . . . . . . . . . .. .. . . . . . . . . . ............................. . . .. ....... . . .. . . . . . . . . . . . ....... . .. . .. . ... . . . . .. . . . . . .... . . ... . . . ....... .. ............. .... . ..... . ............................. . . . . . . .. . ... ... . . . .. . . . ..
lowQualScore : 0 2 2 8 6 6666 0 000 8 000000000 0 000 8 8 00000 22222222 2 0 0 0000 5 00000000000000000000 5 88888 0 0 0 555555555 7 7 7 5 7 7 2 888888888888 22 3 7 2222222 333333 7 333 222222222222222 44 0 0 000 0 66666 44444 0 0000 0 00 8 4 000000 00 2 222 0 2 2 555 22 5 0 55 88 0 2 2 0 0 2 3333 33333333 7 3 3 5 5 0 888888888888 555 88888 0 88 2 2 2222 0 88 2222222 88 2 888888 8888 88 8 0 2 2 0 66 000 222 0 0 8 4 0 22222222 0 0 4444 6666 8 000000 8 0 0 4 0 2 6666 7 2 7 3 0 0 00000 2222 7 222222222 55 33333333 22 3 7 77777777777777777777777 0 7 222 5 7 2222 0 7 7 7 0 777 7 77 0 22 0 0 3 8 4 2 0 0 5 00 44 0 8 7 3 0 4 7 7 7 33333333333333333333333333333 7 0 33 3333333 7 0 22 5 3 0 8 2 0 0 0 0 7 0 3333333 7 77 0 77 7 555 5 3 2 7 77 7 0 5 4 2 2222 0 2 555 0 0 0 2222222 99 5555555555555 1111 7 00000 4 77777777777777777777777777777 7 5 7 3 0 0 22 0 333 000 7 1 7 00 0 0 0 99
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCA---NCT--GG--ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
Reference ( family-3842 ) : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCA---NCT--GG--ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
gi|1 : TGTGATGCAATAGAGTATT--GACAAGATGACGTTATGTT---TATACTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTA----T--ACATAAAAA-AATATCGT-ACTTCCGTTGTTATT---TT---AAAA--------GTGCCATCA-G-TG-TCATATGAAAT-CATGTGA------C--TT-G-T-TGTC-GTCTG-CTTTGTTT-CA---A-CAATG--AAA--AC-CGA-GA----AA-GTGA-A----TG-GGTCGAAA----GAAAA-------AGA-----ACTCG-T-CT-GAG-GTG---AAA-GA-----TCGT-ATT-GAA-TTACTAGA----GAAGG--AAAACTATCAGA------TTTGT--GTCAGATTTTATTG-AACATTCCCA-GTC---TACGATTGGATATATAAG---AAGGTTTAAGGTGCAAGGTTCAGTCGAAAACTTAATAAGAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTGAAG--GTTGGT-AAAAGTAATA-GGAGG-----AC--TT---TGACAGATATTACT-A-A-CAA-TTTAATG--AAATAG-G----AAGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTT--TAC-TAGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAA---GAAAC--GTTTATCGTGGTGCAG-AG-AAAAAGGCATTTGACTGTTG---AC-GACACTGG-AAT-AAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCACGAGTTC-ATATT-TGGCGGAAGAGAGA-CG-AGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC---------GCC-TGT-----TTTG---AGTT-TGAT-ATGGG-GATTGT-TCA---CCT--GC--ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAT-AAA-TGCAGAAA---AATATCA-AAGATTCTG--GACAATAA-CTGTGGCCTGTC-TAGCTCGGCA-TTTAC-CGAAG-GAAACTACA-TTTTC-AAGACGATAATGCGCCTGTCCACCG--GCCCGTTCGAC-CCA-GAATTTCTTGCACAGGAAC-GTA-T----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTC-C--T--ATA-TAAATGTGAT--TG--AAATATATGG-TGCATATTAAACGGAAGCTACAAGCAC-GATCCG------AGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCCTATAC-TATCGATTCCCAGGCGAAT-A-TTGAGT---GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATTA-CA-----------A----AT-GAAGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG---CGAAGG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|10 : TGTGATGCAATA-A-TATTAAGACAAGATGGCGGCATGTT---CAACTTGGCG---GTAT---------GCACTCAAGAAAAACG-TGTGGTAT-----AAATAAAATCAATAT--ACATAAAAATGACAT--T-ACTTCCGT-GTTATTCCCTTGGGAAAC--------TTG-CATAA-ACTGTTCATAAAAAATCCATGTGACTGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTTACATTGA-CAA
gi|11 : agCTTTCGTTT---CAAACGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACcattttaaaatac
gi|12 : tttgaaatacaAAGTTTGTATGGATTCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGTCCAAAAGGTCACCTCACA-------AAG--TAT-------TGAGTTGTAAATACGTC-ATTT-----TTTTATcaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|13 : ATGTGA----TAC--TT-GGT-TGTC-GTCTG-CT--GTTTACA---AACAAGGGGAAA--AT-GGA--A----AA-GTTAAAAACATG-GGTCGAAAA---GGAAA-------Agttcgtttttattaagaatattgatgcgttcctcgtcagtgtaaaca
gi|14 : CTATATTCAAAGCTTATATGTCTCAATTCCGAGGTGA---A-TTCGACAA-GTAAGAAAATCAAAGGGACATGCAATA-------AAA--TAT-------T-acaaataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATA-G-AG------ACAGTT---TAACAGTTATTACTAA-A-AAA-ATTAATGA-AAATAGAG----AAGTGCCTATTAGCAAGC-GAGCTGTACAGT-TTCAAT------TACATAGACATAgattttgtggtgtttgaattttgcgtttacgtgttt
gi|16 : ggttaA--AT-TGA-GA----A----GA-A----TGTGGTCAAAAAAATGGCAA-------AAATCGAGACTCTGTACT-GAAAGTG---AAAAGAAA---TCGT-ATTCAAA-TTTCTAGT----GGATA--AAAACCATCAAG------TTTGT--
gi|17 : GTCATGCAAAA-AGTATTCGT-TAAAATGGCGTCACGTTACCTTTGTTTACA---GT------------CA-CC---GCATACTTTG-GCTGT-----AAAT
gi|19 : actacagaCGTCGCCGTTGTA-AC-CGAATAC-TTTTGGCA--
gi|2 : aATGTGA----TAC--TTAG-T-TA---GTCTG-CTT-ATTTACA---A-GCAGG--AAACAAT-TGA-GA----A--GTAAAACA--TG-GGTCGAAAAA--GGAAA-------GGA-----GATGGG--CT-TAG-ATGTCCAAA--AGG---TCATTGTG-GAG-TTATTACA----GGGTG--GATACAGTCGGAGAAAAATTAGT--G--AGAT---GTTG-AAGTTGCCCAAATCAAGTGTTATTGA-CGTTTGCAAAAAATTTCTGAATCG---GGATCAGTTGAAAACAAACCGAGAAGTGGTCGGCCTCCGAAAATCA----AAC-CCCGG---GATTATCGGAAGTTGGAGAGGATTGTGAAAC-TAATC-G-CAG-----AT-GTTCACTGTCGGATATAACT-GCA-AAA-TTTAACG--AAG-AGAAGACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAA-T--TACAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGA---GAAACCGACTTGCC-TGGTGTCG-GGGGAAAAGACGATGGACTGT-----A--GAGACTGG-AA--ACGT-GTGATATTCTCAGATGA-GC--AAAATCATGAA-TAGGACATGACGAAAGAGTAA-GGATT-TGGAGGAAAAAAGAACGAAGGATGGAGGCCCGATCTCGT---T-CAACA----CGGC-ATTC----C----GCAA-GCAAAAGTACG--AAGTCATGAT-ATGGG----TGT-TTT---GTT--GGG-AGGGTATTGGGAA--CTTTAACGCCTGTGGAA----GGAAAATAT-TAA-TGCTGCTA---A-TATCAGGACATTTTA--GAGGAAAACCTGTGGCCAGTTTTAGCAAGACATTCCCT-CAAAATGGA--TACT-TTTTT-AGG-CGACAACGCGCCCGTCCATCGGAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAACGCTA-T----------AA-AC-----TGTATAAGCTGGCCCTGCCCAA--TCAC--GCGACA-TAA---TAATAATGAAAAATGTATGGAT-CACATAAAAAGAAAACTCCAATCTC-G--T--A----CAGGTGCAATAAATCAAGATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTTTGTATGGCTCCATTCCGAAACG--C-A-TTCAGCAA-GTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------G-AATTGTAA----GTA-ATTAATTTTTTTAATTCTAT--GTT--CG-----------ATTTTGT-TAAA-AT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG---TCAGTGTAAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--cgtttct
gi|3 : TAG-T--TAC-CAGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTAG---ACGGACACTGG-AATGAAAT-A--ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTT--CATTATGGCGGATAAGAGA-CAAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTT---AT-ATGGG-GA-TGTATCA---CCT--GGC-ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TATAAAA-TGCAGAAA---AATACTAACAGATTCTG--GACAATAACCTGTGGCCTGTCTTAGCTCGGTAcgtta
gi|3 : CGGTAATGCGCCTGTCCACCG-AACCCGTTCGAC-CCA-GAATTTCTTACACAGGAGCGGTA-TTACAAAATGTAATAC-----A--ATGAGCTGACC-TGCACATTGTCCG--G--ATA-TAAATGTGAT--TGAAAA-TATCTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAAAT--GATTCGTTCCGTGAAATC-CAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-A-TCGAGC---GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTT-ATTA-----TGCAAGT--A---ATTTACA-----------A----AT-GAAATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGATGGAAGGATTA-GGATT-TGG-AGAAAAAAGA-TGAAGGATGGAGGCCTGATCTCGT---T-CAGAG----CGGGCATTCCTCAA----GCTGAGT-----AC-G--AAGTCATGATCATGGGCGGCAAT-TTA---GGTTGGG--AAGGTGTTGG-GATTTTAACGCAAGTGT--AA----GGAAA-TGT-TAA-TGCTGCTA---AGTATCAGGAAATTTAA--AATGAAAA-------CCTGTTTTAGCAAGACATTTTCCTCAAAATGGA--TATT-TTTTC-AGGATGACAATGCACCCGTTCATCG-AGCTAGATCAACACAA-GAAT
gi|4 : atagtacTGCACCCGTCCATCG-AGCTAGATCAAC-ACAAGAATACGTGGC-CAGAAAT------------------CAC-----A--TTAAGATGGCC-TGCCCAA--TCAC--C--AGACTAAATATCAT--TGAAAA-TGTACGCCTATACATCAAAAGAAAACTCCAATCTC-GAACAGG----TGCAATAAA-AT--CAAGATCTGATTTGACCGAGGAAATT-CGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCTTGTATGGCTCCATTCAGAAACG--T-A-TTCAGCAA-GTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGT-AA--GTAA----TTT-ATTAT----TTTAATT-------TT--CATGTTCGTTTTTA----TT-G--ATAT-TTCAGCCGACAAAATATTG-A--TACGTTCGTCG---TCAGAGTAAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGCacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|5 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnTGTGATGCAATA-AGTATTCGGACAAGATAGCGTCATGTT----ATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGCGCTAT-----AAATAAAGTC----TTTACATGAAAA-ATTATC-TTACTTCCGTTGTTATT---TTT--AAAA--------GTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA----C-T--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CATTT--AAA--ACACGA-GA----AAAGTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAA-GTG---AAA-GAAA---TCGT-ATT-GAAATTACAAGA----GGAAGGAAAAACTATCAGA------TTTGT--GTCAGATTT-ATTG-AACATTCCCAAGTC---TGCGATTGAAGATATAAAGAAAAGGTTTGAGGTGCGAGGTTAAGTCGAAAACTTAAAAAGAAGTGGACTGCCATC----ATCAGTT-A---CAAGGCGTGATTACCGCAAGTTGGAAAGGTTGGTGAAAAGTAATAGG-AGGGACATGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAAATAGAG----AAGTG-CCTTTAGCAAGCAGC--TGTACAG--TTC-AT------TACATAGACATAG-TTATAC-TAGGCGTGTAGCAAAGAAG-AACTCGTAGTTCGG-GAAGTCAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATAAAGT-A--ATATTCTCAGATGA-ATCT-AAATTATGAT-T-GGTCGTGATGgcgtgactacctatatcagcattatttacccttatagcaa
gi|6 : agATT-TGGCGGAAAAGAGA-CGAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----A----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GA-TGTATCA---CCT--GGC-ATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAC-AAG-TTCAGAAA---AATATCAACAGATTCTG--GACAGTAACCTGTGGCCTGTCTTAGCTCGGCATTTTAT-CGAAG-GAAACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTG-AGCCCGTTCGAC-CCA-GAATTTCTTACACAGGAACGGTATT----------AATAC-----A--ATGAGCTGGCC-TGCACAGAGTCTC--G--ATA-TAAATGTGCT--TG-AAAATATTTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCGAAT-ATTTTAAAAATGTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----T----TT--A---ATT--CA-----------A----AT-GAAATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtc
gi|7 : tTATA-TCTTCCAAGATGATAATGCCTCCGTGCACCG-AGCTAGGACCAC-TCA-GAGATACATGGTCAGGAACCGAA-T----------AA-ACGGATAA--ATGAGTTGGCC-AGCTC--AGTCACCGG--ACC-TTAAAATTAT--TG-AAAATGTTTGACTCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGGACAATAAAATCAA-A---CGA----TGATTGGTACCATGCGATT-TTTAACATTTGGACGGAA-ATTTCTCCTGCCTGCATTCAGCCCTTGTATAAATCAATTCCGA---AAATAA-TTTTGAAT-GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------T-AG--ATAA----ATCAATTG-----GTTATTT--ATGTATG--CA-----------T----ATAGTCACGTAGCCAGTTTACAAAAA--TG-ACCATGTCTAGTCAATTCAATGGCGA---CGTCTCCATTGTG-AC-CGAATAC-CTTTGGCA--
gi|8 : gGATGAAATA-AATATTTGGAAAAGATGGCCGCGTGTT---GAGATTTGTACATGTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAAAAAGGT----T--ATATAA----GTTGG--T-ACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTT-----TCT--TT-G-T-TGAC-ATCTG-CTTTATAAAGA---A--AATT--TAA--ACGCGGTGATTTCAA-GTGAGA----TG-GGACGAAAA---GCATATACATATAGC-----ATTCGGTAATAGAG-GGG---AAA-GAAAAGCGCGG-A----AA-CTACTCGATCAAGGGAG--AAA-CCATCAGA------TATGCTCGTCTGTCTT-GTTATAGTATTTCAAAGTG---TACGACTCAAAATAAAAAGAAAAGTTTTGAGAAGTGAGGATTTGTAGAAAACATAAAA--AAATGGACcg
gi|9 : GG-GATGGAAACAGGAAACGGAGAC---TTTCTT-TGGTACAGTAAAAAAAAGGAAATAGACT-TTGCGCAT-GG-ACTGGCAATG--GTCAT-AT-TTTTCTGACGAGAGC--AAGTT--GATCT-CGACATGATGAGCGGGCTCAAAATA-TGGTGGACAAAAAG-CG-AGGATAGCGCTCCGACCTT---GCGTCCAAGGTAAAGGG-ACAC----GCAACCCCAAAT-----TCAGGCAAA--ATGAT-ATGGA-AACTG----AGATGTT--GGAAACGGGGTTGG-AA---CATTTAAG----AAAATAATGGAAA-TAT-AACTTGCTGAAAAAGAATATCAGGACATTTTATTGAGGAAAATTTATGG
blockSeqs : . G A ACCT A CAT ATTTATCAA C AAG T TATAA CAATAT A T A CTT T TCCAATTGATAGTG C AAAC T A C CTGTTACAA A G A T A T T AACAAGGGG CA A T TTTCAA AAAACA T AAT TACATATAGC TA A A TCC A AAAGC ATTC A TCAA T GA C GAAAAA TC T TT T A AAG AG A T TC CG A A C A GAAA GTTA C A A G G G AGGGACATGCA CAC AAA T CA T A GACA C TA GCGAGC T A ACAATC TTA AG A C A A A TG ACG CGA G T G A G TGCGCAT G C TGAA GTG ATCTA C A A A A CAAA A A A A C C AGCG GTAA C CTCAA AT AAAAGTAC GC A C CGGCAATTTAGGTTGGG G G TTT C G TAAT A A A T T AAG A GG C TT G A C A T C T T AC AT C G A A A A A GGTATTACAAAATGTAATACA C C TT ACGCG C A AA A A A A G A C T T A G GGGACAA T AA G TC T GGC C C G CC A G C A AATA T AAT A C C TAGAATT GG TGAATTGTAA ATAC A ATTTT T TTCATGTTCGTTTTTA A A T A T C GG C AC ATT A A AC G T A CG
blockSeqs : . G C C T . . . . C . CTTT A . T T C CCCTTGGGAAAC C TACG . G . TAC . . . T . . T AGCAGG . G . AAA AACA . A AAATCGAG TA . . . . AA TGTG . . T . A . . T TT . A . AA G G GT TG T T A A . AAC . A A G G . AGACA . GCA . A T A . . GG GCAGC . A . T C C T A A . TG . G G . A T T AGACG C . TAAA CAT ATCT . . T C T AGG . C . A G A AGCG . . GCAAC GA TTT . A . AACTGAGATGTTGGAA T . C C A . C . . . A . G AC G . C T C T T C . T . T . . C T . . A CGAATAAACGGATAA . A GA ACCGG . G . A A C T A C A G A . A CAG . TG A TC . AAG C C A AG A G A G AAT . AA A C A . . TGAGTT . . T T CTATGTTCGATTTT . A T A A G AT G AC . C A A . . T .
blockSeqs : . A C G T . . . . T . TT . . T T . TTTAAAA . T . T . TAC . . . T . . T ACATTT . . . AA GA . . GGA TA . . . . GG ATT . . A . T . . . . . A . C G T AA . A A A . G . . CAGAT . AAC . . . A . . CT A . . . T T C T . . . TC . G . . A T T TGAC C . AC A GAGC . . T G A AGG . C . A T C GCGT . . C AT TTT . A . GATGTATCACCTGGC A . C G A . A . . . T . A GG A . T A C A T A . . . T . . A A . . T GCTATAAACTGT . C A CGG . C . A A A C G A C T T . G AGG . TG G T . GGC C . G CC A G C A AAT . AA A T C . . GAATT . . . G ATGTATGCAT . A T A T C GA T AC . G G A . . T .
blockSeqs : . . T . G . . . . . . TCT . . . A . . . AAATT . . . A GA . . AGA . . . . . AA A . . A . C . . . GA . . . . A A A A . . TG A GCA . . A A C TC . T . A G A T . . G AA TCA . A . GATGTATCACCTGGC T . C C A . C . . . A . A AC G . C T T T A . . A A . . . GGTATTAATACA . A A ACC . G . . . T T C C A G A . G CAG . T G . . AAG G . A AG T C G G C . AA T T A . . GTAG . . . T AATTTACAA . T C . A G AT G A . C A T . . A .
blockSeqs : CT . . . . . . . . . . A A . . . . . . C T T . . A A AC . . . TGTTTTGTTGGG C . . . . . A . . . T . . GG C . G A . . C T . . . CACA . T A TCG . T . . . T C . A T A C . . A . . . . . TTA . . T CC A G C A A . AA A T C . . TAG . . . T AATTCAA . . . . C T TA A . . G G A . . T .
blockSeqs : . A G . . T C G G C . AT T T A . . TAG . . . . . A . T . . A .
blockSeqs : C A A . T . . G T G . . A . . T
blockSeqCons : TAC****** AA***** AAA*** TA AA*** AT*** GAC***** TGA* A*** GCN*** N******** AN GCGATGTATCGNCTGGG****** GG GGTATAAACACA***************** A* NCG**** CGG**** T* C*** AA* ATATTCAA********************* AC*
originalCons : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGT-ATT-GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTTG---AC-GACACTGG-AATGAAGT-AT-ATATTCTCAGATGA-ATCTAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----G----GCCATGT-----TTTG--AAGTTATGAT-ATGGG-GACTGT-TCA---NCT--GG--ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTA-T----------AATAC-----A--ATGAGCTGGCC-TGCNCAGAGTCAC--G--ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGAAT-A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATT--A---ATT--CA-----------A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
finalCons : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGATAC------TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GAAA-----GTGAAAA---TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG---AAA-GAAA---TCGTAT---GAA-TTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTGAC-----GACACTGG-AATGA-GTA---ATATTCTCAGATGAGCN---AAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTCN--------GCCANGT-----TTTG--AAGTTATGAT-ATGGGGCGATGTATCGNCTGGG------ANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTATAAACACA-----------------ATGAGCTGGCC-TGCNCAA-GTCNCG----ATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCGC---A-TTCAGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTC-ATTA-----TTTAATTATATTCAA---------------------AT-GAAATATATNCAGNCGNCAAGAGATTGAC-CCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA
Alignments
lowQualScore : 2222 111 333333333 111 22222 22222222 1 2222 1 44444444444444444444 22222 1 1 222222222 111111111111 11 1 1111 22222 111 222222222222222 1111 1111 333 1111 11 222222 11 111 1 111 2222 33333333 1 333333333333 111 11111 1 22 2222 1 2222222 22 222222 1111 11 111 111 1 2222222222 222222 3333 1111 11111 1111 222222222222222222222222 555555555555555555 11 111 1111 111 1 1 11 1 1 3333333333 11111111111 1 2222222 22 1 111 1111111 2222222222222 1111 11111 22222 333333333333333333333333333 111
lowQualScore : 8 3 8 0 0 2222 1 444 0 222222222 8 444 0 3 00000 66666666 3 0 1 6666 0 77777777777777777777 2 44444 0 1 0 777777777 6 6 6 3 6 6 3 333333333333 11 6 8 7777 88 99999 6 888 444444444444444 66 8 8 7777 8 7777 555 7777 1 11 0 1 333333 11 3 000 0 0 3 777 44 6 1 44 66 1 0 0 1 1 3 8888 33333333 6 7 7 2 2 0 222222222222 777 55555 0 33 3 3 1111 0 11 8888888 33 3 888888 4444 00 8 2 3 3 8 11 444 444 0 8 3 1 1 9999999999 5 8 000000 8 8 2222 0 8 8 1 1 3 8888 6 5 6 7 1 1 33333 4444 6 888888888888888888888888 99 7 6 888888888888888888 11 1 6 000 2 1 4444 1 6 6 6 1 111 1 44 1 99 1 1 9 0 1 3 1 0 5 88 99 8 0 5 1 1 0 5 5 1 0 8888888888 99 6 6 1 88888888888 6 1 99 5 7 1 7 5 1 1 1 1 6 1 1111111 6 88 1 44 6 333 2 3 2 0 11 0 1 4 3 333 888 5 5 888 1 2 1 6666666 66 1111111111111 2222 44444 00000 555555555555555555555555555 6 3 1 7 1 1 33 1 888 000 1 0 2 66 5 5 1 77
lowQualScore : . . . . . .... . ... . ......... . ... . . ..... ........ . . . .... . .................... . ..... . . . ......... . . . . . . . ............ .. . . .... .. ..... . ... ............... .. . . .... . .... ... .... . .. . . ...... .. . ... . . . ... .. . . .. .. . . . . . . .... ........ . . . . . . ............ ... ..... . .. . . .... . .. ....... .. . ...... .... .. . . . . . .. ... ... . . . . . .......... . . ...... . . .... . . . . . . .... . . . . . . ..... .... . ........................ .. . . .................. .. . . ... . . .... . . . . . ... . .. . .. . . . . . . . . . .. .. . . . . . . . . . . .......... .. . . . ........... . . .. . . . . . . . . . . . ....... . .. . .. . ... . . . . .. . . . . ... ... . . ... . . . ....... .. ............. .... ..... ..... ........................... . . . . . . .. . ... ... . . . .. . . . ..
lowQualScore : 0 2 2 8 6 6666 0 000 8 000000000 0 000 8 8 00000 22222222 2 0 0 0000 5 00000000000000000000 5 88888 0 0 0 555555555 7 7 7 5 7 7 2 888888888888 00 0 0 0000 88 77777 7 333 222222222222222 44 0 0 0000 0 4444 666 0000 0 00 8 4 000000 00 2 222 0 2 2 555 22 5 0 55 88 0 2 2 0 0 2 3333 33333333 7 3 3 5 5 0 888888888888 555 88888 0 88 2 2 2222 0 88 2222222 88 2 888888 8888 88 8 0 2 2 0 66 000 222 0 0 8 4 0 2222222222 0 0 444444 0 0 4444 8 0 0 4 0 2 6666 7 2 7 3 0 0 00000 2222 7 222222222222222222222222 22 3 7 777777777777777777 88 0 7 222 5 7 2222 0 7 7 7 0 777 7 77 0 22 0 0 3 8 4 2 0 0 5 00 44 0 8 7 3 0 4 7 7 7 8 3333333333 22 7 7 0 88888888888 7 0 22 5 3 0 8 2 0 0 0 0 7 0 3333333 7 77 0 77 7 555 5 3 2 7 77 7 0 5 4 444 888 0 0 555 0 0 0 2222222 99 5555555555555 1111 33333 00000 666666666666666666666666666 7 5 7 3 0 0 22 0 333 000 7 1 7 00 0 0 0 99
consensus : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAGA-A---TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG----AAA-GA-AA-TCGTATT-AAATTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTT-G---AC-GACACTGG-AA-T-G-AGTA-ATA-TTCTCAGATGAATCCAAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----CGCCANGT-----T---T-CG--AAGTTATGAT-ATGGG----G-GA-TGTATCGCCTGG-NANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTAT------A---AAC--AC-AATGAGCTGGCC-TGCNCA-A-GT-CNC--GATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCG--NA---T-TC-AGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTCA-----TTA-----TTTAAT--T---ATGTT--CG-----A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
Reference ( family-3842 ) : TGTGATGCAATA-AGTATTCGGACAAGATGGCGTCATGTT---TATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTC----T--ACATAAAAA-GNTATC-T-ACTTCCGTCGTTATT---TT---AAAN--------GTGCCATTA-G-TG-TCATANGAAAT-CATGTGA----TAC--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAAA-A---TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAG-GTG----AAA-GA-AA-TCGTAT--GAATTACTAGA----GGANG--AAAACCATCAGA------TTTGT--GTCAGATTT-GTTG-AACATTCCCAAGTC---TGCGATTGAANATATAAAGAAAAGNTTTGAGGCGCGAGGNTCAGTCGAAAACNTAANAAGAAGTGGACGGCCACC----ATCAGTT-AAC-CAAGGCGTGATTACCGCAAGTTGGAGAGGTTGGTGAAAAGTAATA-G-AGG-----ACAGTT---TGACAGATATTACT-A-A-AAA-TTTAATG--AAATAGAG----AAGTG-CTNTTAGCAAGC-GA--TGTACAG--TTCAAT------TACATAGACATAG-T--TAC-TAGGCGCGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTNAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTG-T-G---AC-GACACTGG-AA-T-G-AGTA-ATA-TTCTCAGATGAG--CNAAATTATGAT-T-GGTCATGATGNACGAGTTC-GNATT-TGGCGGAAAAGAGA-CGAAGGATGGAGGCCNGACCTNGTAGCG-CCGCG----CGGG-ACTC----NGCCANGT-----T---T-TG--AAGTTATGAT-ATGGG----GCGA-TGTATCGNCTGG-GANGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGNAA-TAT-AAA-TGCNGAAA---AATATCAGGAGATTCTG--GACGANAACCTGTGGCCTGTCTTAGCTCGGCATTTTNC-CGAAGTGGAACTACA-TTTTC-AAGACGATAATGCGCCCGTCCACCG-AGCCAGNTCGAC-CCA-GAATTTCTTGCACAGGAACGGTAT------A---AAC--AC-AATGAGCTGGCC-TGCNCA-A-GT-CNC--GATA-TAAATGTGAT--TGAAAAATGTNTGGCTGTACATTAAANGGAAGCTNCAAGCNC-GAGTCGG----CAGGATCAA-ATGTCGAGAT-TGATTTGTTCCGTGAAATC-CGANACATTTGGACTCGA-ATCACGCCCGNCTACGTTCAANGCTTGTACGGATCGATTCCGAGGCG--CA---T-TC-AGCAA-GTNATCAGACCGAAAGGACACCTNACA-------AAA--TAT-------T-AG--GTAA----GTCA-----TTA-----TTTAAT--T---ATATT--CA-----A----AT-GAAATATATNCAGNCGNCAAGAGATTG-ACCCACTTTCGTCG---CGAAGGTAAACGCGCCGCCATCGTG-NC-CGAATAC-TTNTTGCA--TCACAC
gi|1 : TGTGATGCAATAGAGTATT--GACAAGATGACGTTATGTT---TATACTTGCG---GTAT---------GCA-TC---AGAAACGTTGTGCTAT-----AAATAAAGTA----T--ACATAAAAA-AATATCGT-ACTTCCGTTGTTATT---TT---AAAA--------GTGCCATCA-G-TG-TCATATGAAAT-CATGTGA------C--TT-G-T-TGTC-GTCTG-CTTTGTTT-CA---A-CAATG--AAA--AC-CGA-GA----AA-GTGAA------TG-GGTCGAAA----GAAAA-------AGA-----ACTCG-T-CT-GAG-GTG----AAA-GA----TCGTATT-GAATTACTAGA----GAAGG--AAAACTATCAGA------TTTGT--GTCAGATTTTATTG-AACATTCCCA-GTC---TACGATTGGATATATAAG---AAGGTTTAAGGTGCAAGGTTCAGTCGAAAACTTAATAAGAAGTGGACGACCACC----ATCAGTTTAATACAAGGCGTGATT-CCGCAAGTTGAAG--GTTGGT-AAAAGTAATA-GGAGG-----AC--TT---TGACAGATATTACT-A-A-CAA-TTTAATG--AAATAG-G----AAGTG-CTCTTAGCAA-C-GA--TGTACAAGTTTCACT------TACATAGACATAGTT--TAC-TAGG-GTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGGCAACCGAAA---GAAAC--GTTTATCGTGGTGCAG-AG-AAAAAGGCATTTGACTGTT-G---AC-GACACTGG-AA-T-A-AGTATATA-TTCTCAGATGAATCTAAAATTATGAT-T-GGTCATGATTCACGAGTTC-ATATT-TGGCGGAAGAGAGA-CG-AGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC-----GCC-TGT-----T---T-TG---AGTT-TGAT-ATGGG------GATTGT-TCACCT-G-CATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAT-AAA-TGCAGAAA---AATATCA-AAGATTCTG--GACAATAA-CTGTGGCCTGTC-TAGCTCGGCA-TTTAC-CGAAG-GAAACTACA-TTTTC-AAGACGATAATGCGCCTGTCCACCG--GCCCGTTCGAC-CCA-GAATTTCTTGCACAGGAAC-GTAT----------AAT--AC-AATGAGCTGGCC-TGCACAGA-GT-C-C--TATA-TAAATGTGAT--TG--AAATATATGG-TGCATATTAAACGGAAGCTACAAGCAC-GATCCG------AGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAAACATTTGGACTCGA-ATCACACCTGAGTATGTTAAATGCCTATAC-TATCGATTCCCAGGCGAATA---T-TG-AGT---GTTATCCGACTGAAGGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTCA-----TTA-----TTTAAT--T---A-ATTA-CA-----A----AT-GAAGTATATACAGGCAATAAGAGATTGAACCCACTTTCGTTG---CGAAGG-AAACATAACGTCATCTTG-TC-CGAATAC-TTATTGCA--TCACAC
gi|10 : TGTGATGCAATA-A-TATTAAGACAAGATGGCGGCATGTT---CAACTTGGCG---GTAT---------GCACTCAAGAAAAACG-TGTGGTAT-----AAATAAAATCAATAT--ACATAAAAATGACAT--T-ACTTCCGT-GTTATTCCCTTGGGAAAC--------TTG-CATAA-ACTGTTCATAAAAAATCCATGTGACTGTTACAAGT-G-TATGTCAGTCTGTTTTTGCTTACATTGA-CAA
gi|11 : agCTTTCGTTT---CAAACGTAAACACGCCGTCATTGTGACC-CGAATAC-TTATTGCACGTCACcattttaaaatac
gi|12 : tttgaaatacaAAGTTTGTATGGATTCATTCCGAAACG--CA---T-TC-AGCAA-GTAATCAGTCCAAAAGGTCACCTCACA-------AAG--TAT-------TGAGTTGTAAATACGTCA-----TT------TTT--T--T---ATGTT--Ccaaatagaaagtgaccttgccctgactatttttgtattgtcagaaagtagaattttaaaaataaaaattgatcacatggtacgt
gi|13 : ATGTGA----TAC--TT-GGT-TGTC-GTCTG-CT--GTTTACA---AACAAGGGGAAA--AT-GGA--A----AA-GTTAAA-AACATG-GGTCGAAAA---GGAAA-------Agtttttattaagaatattgatgcgttcctcgtcagtgtaaaca
gi|14 : CTATATTCAAAGCTTATATGTCTCAATTCCGAGGTG--AA---T-TC-GACAA-GTAAGAAAATCAAAGGGACATGCAATA-------AAA--TAT-------T-acaaataggtcattgtggggttattgcagggtggacacagt
gi|15 : TGGTGAAAAGTAATA-G-AG------ACAGTT---TAACAGTTATTACTAA-A-AAA-ATTAATGA-AAATAGAG----AAGTGCCTATTAGCAAGC-GAGCTGTACAGT-TTCAAT------TACATAGACATAgattttgtggtgtttgaattttgcgtttacgtgttt
gi|16 : ggttaAGA-A---TGTGGTCAAAAAAATGGCAA-------AAATCGAGACTCTGTACT-GAAAGTG----AAAAGA-AA-TCGTATTCAAATTTCTAGT----GGATA--AAAACCATCAAG------TTTGT--
gi|17 : aattgagaGTCATGCAAAA-AGTATTCGT-TAAAATGGCGTCACGTTACCTTTGTTTACA---GT------------CA-CC---GCATACTTTG-GCTGT-----AAAT
gi|19 : actacagaCGTCGCCGTTGTA-AC-CGAATAC-TTTTGGCA--
gi|2 : aATGTGA----TAC--TTAG-T-TA---GTCTG-CTT-ATTTACA---A-GCAGG--AAACAAT-TGA-GA----A--GTAAAACA---TG-GGTCGAAAAA--GGAAA-------GGA-----GATGGG--CT-TAG-ATGTCCAAAA-GGTCA-TTGTG---GAGTTATTACA----GGGTG--GATACAGTCGGAGAAAAATTAGT--G--AGAT---GTTG-AAGTTGCCCAAATCAAGTGTTATTGA-CGTTTGCAAAAAATTTCTGAATCG---GGATCAGTTGAAAACAAACCGAGAAGTGGTCGGCCTCCGAAAATCA----AAC-CCCGG---GATTATCGGAAGTTGGAGAGGATTGTGAAAC-TAATC-G-CAG-----AT-GTTCACTGTCGGATATAACT-GCA-AAA-TTTAACG--AAG-AGAAGACAAAGTC-CGGTGAGTAA----A--AGGACAA--TTCAATACAATCTGCACAAAAATAA-T--TACAGAGGAGCATAGCCAAGA-GAAACTTGTTGTTCAAAGAAGTGAATCGGGA---GAAACCGACTTGCC-TGGTGTCG-GGGGAAAAGACGATGGACTG-T-A------GAGACTGG-AAAC-G-TGTG-ATA-TTCTCAGATGAG--CAAAATCATGAA-TAGGACATGACGAAAGAGTAA-GGATT-TGGAGGAAAAAAGAACGAAGGATGGAGGCCCGATCTCGT---T-CAACA----CGGC-ATTC----CGC-AAGCAAAAGT---A-CG--AAGTCATGAT-ATGGG---------TGTTTTGT-TGG-GAGGGTATTGGGAA--CTTTAACGCCTGTGGAA----GGAAAATAT-TAA-TGCTGCTA---A-TATCAGGACATTTTA--GAGGAAAACCTGTGGCCAGTTTTAGCAAGACATTCCCT-CAAAATGGA--TACT-TTTTT-AGG-CGACAACGCGCCCGTCCATCGGAGCCAGATCAAC-CCA-AGATATGTGGC-CAGAAACGCTAT------A---AAC--TG-TATAAGCTGGCCCTGCCCA-A-TCACGC--GACA-TAA---TAATAATGAAAAATGTATGGAT-CACATAAAAAGAAAACTCCAATCTC-G--T--A----CAGGTGCAATAAATCAAGATCTGATTTGATCGAGGAAATTTCGGCGGATATGGACTCGACATCACGCCTGCCTACATTCAAAGTTTGTATGGCTCCATTCCGAAACG--CA---T-TC-AGCAA-GTAATCAGGCTTAAAGGACACCTCACG-------AAG--TAT-------G-AATTGTAA----GTAA-----TTAATTTTTTTAATTCT---ATGTT--CG-----ATTTTGT-TAAA-AT-TTCAGCTGGCAAAACATTG---CTACGTTCGTCG---TCAGTGTAAACACGCCGCCATTGTG-ACGCGAATACTTTTTTGCA--cgtttct
gi|3 : TAG-T--TAC-CAGGCGTGTAGCAAAGAAGAAACTCGTAGTTCGG-GAAGTGAACCGGAA---GAAAC--GCTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTG-TAG---ACGGACACTGG-AA-T-GAAATA-ATA-TTCTCAGATGAATCTAAAATTATGAT-T-GGTCATGATTCATGAGTTT--CATTATGGCGGATAAGAGA-CAAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----GGCCATGT-----T---T-TG--AAGTT---AT-ATGGG------GA-TGTATCACCTGG-CATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TATAAAA-TGCAGAAA---AATACTAACAGATTCTG--GACAATAACCTGTGGCCTGTCTTAGCTCGGTAcgtta
gi|3 : CGGTAATGCGCCTGTCCACCG-AACCCGTTCGAC-CCA-GAATTTCTTACACAGGAGCGGTATTACAAAATGTAAT--AC-AATGAGCTGACC-TGCACA-TTGT-CCG--GATA-TAAATGTGAT--TGAAAA-TATCTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAAAT--GATTCGTTCCGTGAAATC-CAAGACATTTGGACTCTA-ATCACACCCGAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCG--AA---TATCGAGC---GTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTTA-----TTA-----TGCAAG--T---A-ATTTACA-----A----AT-GAAATATATACAGGCATTTAGAGATTG-ACCCGATTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCACAatgcgcctgtccaccgaacccgttcgacccagaatttcttacacaggagcggtattacaaaatgtaatacaatgagctgacctgcacattgtccggatataaatgtgattgaaaatatctggttgtatattaaacggaagctacaagcacgagtcagcaggatcaaatgtcgaaatgattcgttccgtgaaatccaagacatttggactctaatcacacccgagtatgttaaatgcctataccgatcgattcccaggcgaatatcgagcgttatccgactgaaaggacatctaacaaaatattaggtaagttattatgcaagtaatttacaaatgaaatatatacaggcatttagagattgacccgatttcgttgcgaaggtaaacgtgccgccatcttgtccgaatacttattgcatcaca
gi|4 : tagttaccaggcgtgtagcaaagaagaaactcgtagttcgggaagtgaaccggaagaaacgcttatcgtggtgcagagaaaaaaggcatttgactgtagacggacactggaatgaaataatattctcagatgaatctaaaattatgattggtcatgattcatgagtttcattatggcggataagagacaagggatggaggccggacttagtagcgccgcgcgggactcggccatgttttgaagttatatggggatgtatcacctggcatggtgttggaaccatcacagctgtagaaggcaatataaaatgcagaaaaatactaacagattctggacaataacctgtggcctgtcttagctTGATGGAAGGATTA-GGATT-TGG-AGAAAAAAGA-TGAAGGATGGAGGCCTGATCTCGT---T-CAGAG----CGGGCATTC----C-TCAAGC-----TGAGTACG--AAGTCATGATCATGGGCG--GCAA-TTTA--GGTTGG-GAAGGTGTTGG-GATTTTAACGCAAGTGT--AA----GGAAA-TGT-TAA-TGCTGCTA---AGTATCAGGAAATTTAA--AATGAAAA-------CCTGTTTTAGCAAGACATTTTCCTCAAAATGGA--TATT-TTTTC-AGGATGACAATGCACCCGTTCATCG-AGCTAGATCAACACAA-GAAT
gi|4 : atagtacTGCACCCGTCCATCG-AGCTAGATCAAC-ACAAGAATACGTGGC-CAGAAAT-----------------C--AC-ATTAAGATGGCC-TGCCCA-A--T-CAC--CAGACTAAATATCAT--TGAAAA-TGTACGCCTATACATCAAAAGAAAACTCCAATCTC-GAACAGG----TGCAATAAA-AT--CAAGATCTGATTTGACCGAGGAAATT-CGGCATATATGGACT-GACATCACGCCTGCCTACATTCAAAGCTTGTATGGCTCCATTCAGAAACG--TA---T-TC-AGCAA-GTAATCAGACTAAAAGGACACCTCACA-------AAG--TATTGAATTGT-AA--GTAA----TTTA-----TTAT----TTTAAT--TTTCATGTT--CGTTTTTA----TT-G--ATAT-TTCAGCCGACAAAATATTG-A--TACGTTCGTCG---TCAGAGTAAACACGCCGTCATTGTG-AC-CGAATAC-TTTTTGCacgtggntgcacccgtccatcgagctagatcaacacaagaatacgtggccagaaatcacattaagatggcctgcccaatcaccagactaaatatcattgaaaatgtacgcctatacatcaaaagaaaactccaatctcgaacaggtgcaataaaatcaagatctgatttgaccgaggaaattcggcatatatggactgacatcacgcctgcctacattcaaagcttgtatggctccattcagaaacgtattcagcaagtaatcagactaaaaggacacctcacaaagtattgaattgtaagtaatttattattttaattttcatgttcgtttttattgatatttcagccgacaaaatattgatacgttcgtcgtcagagtaaacacgccgtcattgtgaccgaatactttttgcgcgtgactacctatatcagcattatttacccttatagcaa
gi|5 : atagtactgatggaaggattaggatttggagaaaaaagatgaaggatggaggcctgatctcgttcagagcgggcattcctcaagctgagtacgaagtcatgatcatgggcggcaatttaggttgggaaggtgttgggattttaacgcaagtgtaaggaaatgttaatgctgctaagtatcaggaaatttaaaatgaaaacctgttttagcaagacattttcctcaaaatggatattttttcaggatgacaatgcacccgttcatcgagctagatcaacacaagaatacgtggnTGTGATGCAATA-AGTATTCGGACAAGATAGCGTCATGTT----ATATTTGCG---GTAT---------GCA-TC---AGAAACGTTGCGCTAT-----AAATAAAGTC----TTTACATGAAAA-ATTATC-TTACTTCCGTTGTTATT---TTT--AAAA--------GTGCCATTACG-TG-TCAGAGGAAAT-CATGTGA----C-T--TT-G-T-TGTC-GTCTG-CTTTGTTTACA---A-CATTT--AAA--ACACGA-GA----AAAGTGAGA-----TG-GGTCGAAAA---GGAAA-------AGA-----ACTCGGTACT-GAA-GTG----AAA-GA-AA-TCGTATTGAAATTACAAGA----GGAAGGAAAAACTATCAGA------TTTGT--GTCAGATTT-ATTG-AACATTCCCAAGTC---TGCGATTGAAGATATAAAGAAAAGGTTTGAGGTGCGAGGTTAAGTCGAAAACTTAAAAAGAAGTGGACTGCCATC----ATCAGTT-A---CAAGGCGTGATTACCGCAAGTTGGAAAGGTTGGTGAAAAGTAATAGG-AGGGACATGCAGTT---TGACAGATATTACT-A-ACAAATTTTAATGCAAAATAGAG----AAGTG-CCTTTAGCAAGCAGC--TGTACAG--TTC-AT------TACATAGACATAG-TTATAC-TAGGCGTGTAGCAAAGAAG-AACTCGTAGTTCGG-GAAGTCAACCGGAA---GAAAC--GTTTATCGTGGTGCAG-AGAAAAAAGGCATTTGACTGTT-G---AC-GACACTGG-AA-TAA-AGTA-ATA-TTCTCAGATGAAT-CTAAATTATGAT-T-GGTCGTGATGgcgtgactacctatatcagcattatttacccttatagcaa
gi|6 : agATT-TGGCGGAAAAGAGA-CGAGGGATGGAGGCCGGACTTAGTAGCG-CCGCG----CGGG-ACTC----AGCCATGT-----T---T-TG--AAGTTATGAT-ATGGG----G--A-TGTATCACCTGG-CATGGTGTTGG-AA--CCATCACAGCTGTAGAA----GGCAA-TAC-AAG-TTCAGAAA---AATATCAACAGATTCTG--GACAGTAACCTGTGGCCTGTCTTAGCTCGGCATTTTAT-CGAAG-GAAACTACATTTTTC-AAGACGATAATGCGCCTGTCCACTG-AGCCCGTTCGAC-CCA-GAATTTCTTACACAGGAACGGTAT------T---AAT--AC-AATGAGCTGGCC-TGCACAGA-GT-CTC--GATA-TAAATGTGCT--TG-AAAATATTTGGTTGTATATTAAACGGAAGCTACAAGCAC-GAGTCAG----CAGGATCAA-ATGTCGAGA--TGACCTGTTCCGTGAAATC-CAAGACATTTGGACTCGA-ATCACACCCAAGTATGTTAAATGCCTATACCGATCGATTCCCAGGCG--AATATT-TT-AAAAATGTTATCCGACTGAAAGGACATCTAACA-------AAA--TAT-------T-AG--GTAA----GTCA-----TTA-----TTTA----------ATT--CA-----A----AT-GAAATACATACAGGCATTAAGAGATTG-ACCCACTTTCGTTG---CGAAGGTAAACGTGCCGCCATCTTG-TC-CGAATAC-TTATTGCA--TCtc
gi|7 : tTATA-TCTTCCAAGATGATAATGCCTCCGTGCACCG-AGCTAGGACCAC-TCA-GAGATACATGGTCAGGAACCGAAT------A---AACGGATAAATGAGTTGGCC-AGCTC--A-GT-CACCGGACC-TTAAAATTAT--TG-AAAATGTTTGACTCTACATTAAAAGAAAGTTTCAAACCCAAAGTGGGACAATAAAATCAA-A---CGA----TGATTGGTACCATGCGATT-TTTAACATTTGGACGGAA-ATTTCTCCTGCCTGCATTCAGCCCTTGTATAAATCAATTCCGAAAAT--AA---T-TT-TGAAT-GTGATTAAGGTGAAAGGCCACTTGACATAGAATTAAAGGTGTG------T-AG--ATAA----ATCAATTGGTTA-----TTTA----T---GTATG--CA-----T----ATAGTCACGTAGCCAGTTTACAAAAA--TG-ACCATGTCTAGTCAATTCAATGGCGA---CGTCTCCATTGTG-AC-CGAATAC-CTTTGGCA--
gi|8 : gGATGAAATA-AATATTTGGAAAAGATGGCCGCGTGTT---GAGATTTGTACATGTACATTTATCAAGCA-TC---AGAGACGTTTTGCTGTTATAAAAAAAAAGGT----T--ATATAA----GTTGG--T-ACATCTGCCATTATT---TC---CAATTGATAGTGGTGCCACT----TG-CCTTATGAAAT-CATGTT-----TCT--TT-G-T-TGAC-ATCTG-CTTTATAAAGA---A--AATT--TAA--ACGCGGTGATTTCAA-GTGAGA-----TG-GGACGAAAA---GCATATACATATAGC-----ATTCGGTAATAGAG-GGG----AAA-GA-AAAGCGCGG--AAACTACTCGATCAAGGGAG--AAA-CCATCAGA------TATGCTCGTCTGTCTT-GTTATAGTATTTCAAAGTG---TACGACTCAAAATAAAAAGAAAAGTTTTGAGAAGTGAGGATTTGTAGAAAACATAAAA--AAATGGACcg
gi|9 : GG-GATGGAAACAGGAAACGGAGAC---TTTCTT-TGGTACAGTAAAAAAAAGGAAATAGACTT-T-GCGCAT-GG-ACTGGCAA-T-G--GTC-ATATTTTTCTGACGAG--AGCAAGT-TGATCT-CGACATGATGAGCGGGCTCAAAATA-TGGTGGACAAAAAG-CG-AGGATAGCGCTCCGACCTT---GCGTCCAAGGTAAAGGG-ACACGCAACCCCAAAT-----T---C-AGGCAAA--ATGAT-ATGGAAACTGAGA-TGT------TGGAAACGGGGTTGG-AA---CATTTAAG----AAAATAATGGAAA-TAT-AACTTGCTGAAAAAGAATATCAGGACATTTTATTGAGGAAAATTTATGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTATGTGCTTATATATGGACAGCAGTGTGCTTATCACTATGGCA