lowQualScore : 111111 11111111111111111111
lowQualScore : 111111 4 2 1 33 33333333333333333333 1 2 333 2222 1 1 4444 1 2 2 2 1 22222 1 33333 2 1 2 222 2 111 1 11111 1 2 11 1 1 111 111 444444 2222222 1 1 1111 111 111111 11 33333333 2222 22 22222 111 22 111111 22
lowQualScore : 555555 0 6 0 2 5 00 88 55555555555555555555 5 66 0 4 000 1111 2 0 5 2222 5 0 3 0 5 6 77777 5 66666 0 5 0 2 111 0 777 0 99999 2 0 1 88 33 4 0 0 111 222 888888 5555555 0 0 6 3 6 6 0 1111 0 99 1 999 6 3 6 999999 5 00 5 55555555 5 5 1111 44 5 77 77 3 6 888 6 1 6 1 00000 99 888 99 5 55 5 5 9 66 5 444444 77
lowQualScore : ...... . . . . . .. .. .................... . .. . . ... .... . . . .... . . . . . . ..... . ..... . . . . ... . ... . ..... . . . .. .. . . . ... ... ...... ....... . . . . . . . .... . .. . ... . . . ...... . .. . ........ . . .... .. . .. .. . . ... . . . . ..... .. ... .. . .. . . . .. . ...... ..
lowQualScore : 000000 0 0 0 5 0 55 00 55555555555555555555 5 55 0 0 000 0000 5 5 0 5555 5 0 0 0 0 0 00000 0 00000 0 0 0 5 555 0 777 0 00000 5 0 2 55 88 0 0 0 000 888 222222 8888888 0 0 7 7 7 7 8 0000 8 99 8 888 7 3 7 666666 7 00 0 33333333 7 7 0000 00 7 99 99 7 7 555 7 0 0 4 77777 22 333 22 7 44 0 0 9 99 7 999999 00
consensus : GAGAAGAC------GCTGCCAAACATACCGGAGAGNAGGTGGGTCTGCNATNNAAGTACCAAGGCCAGAACGGAGACGTTGAACTCTTAANNTAGGAAATGCCNGCTCGCCGGTTAAGGTTCATATGATNAGNAACTACGCGGCGCAGACAGACACACTTTACAATACCTAGGTAGCATCAATCTACATCAGAGGGCGGCACAAAGGAAGTGGCAATCCACAGCAGAACTTNGTAAGGCCAGGAGAGTATTTAGAGAAAATG-A-AT-AA-CATCTGGAGGTCTA-CCCAGTACAG--CACCANCACC-AA-GC-T-GAAAC-TATA-ACAG-GCTGTGTTG--TC--TC-AACCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAGATC-TTTCC--AA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGAATACT----TA-G-GATATTCT-GGCCAG-AGAAGA-TA-A--C--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGATGGA-TAGGACA-TGT-CCTNCG--AAAA-A-----ACC-CAGTCAAT
Reference ( gi|3 ) : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGATGG-CTCTTAATGT-GGAAATGCCTGCTC-C-GGTTAAGGT-CA-ATGATGAAGAACTACGC----CAGACAGACA-ACTTCACA-TACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTA-G-GGCA-TCCACAGCAGA-CTTGGTAAGGCCAGGAGAGTATTTAGAG-AAATG-A-AT-AA-CATCTGGAGGTCTA-CCGAGTGCAG--CACCAACACC-AA-GC-T-GAAGT-TATA-CCAGAGCTGTGTTA--TT--TC-AACCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAGATC-TTTCT--AA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGAATACT----TT-G-GATATTCT-GGCTAA-AGAAGG-TA-A--C--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGATGGT-TAGGACA-TGT-CCTACG--AAAA-A-----ACCTTAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACGTTGAACTCTTAAATTAGGAAATGCCTACTC-CCGATTAAGAT-CATATGATGAGAAACTACGC----CAGAC-GACACACTTTACA-TACCTAGGTAGCATCA-TCTACAT-AGAGGGCGGCACAAAGGA-GTGACA-TCCACA-CAGA-CTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAATG-A-ACAAA-CA-CTGGAGGTCTA-CC--ATACAG--CACCAACACCAAA-GC-TGGAAAC-TATA--CAG-GCTGTGTTG--TC--TCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAGACCTTTTCC--AA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGAATACG----TA-GTGATATTTTGGGCCAG-AGAAGA-TA-A--C--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCTGGCATAGGACATTGTCCCTTCG--AA
gi|2 : -GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG---A----------------CTCT-AATGT-GGAAATACCAGCTCGC-GGTTAAGGTTCA-ATGATTAATAACTA-GCGGCGCAGACAGACA-ACTT-ACAATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAG-GGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAG-AAATGGA-AT-AAACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACA-AAAGC-T-GAAGTCTATAACCAGAGTTGTGTTTGTTT--TC-AACCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAG-TC-TCTCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGAATACG----TA-G-GATATTCT-GACTAGTAGAAGGTTA-A--CAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGTGGA-TAGGACA-TGT-CCTACA--AAAA-A-----Ataccccaacccccccccccagtcaataaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|9 : TG-ATAT-AA-TATCTGAAGGTCTA-CCCAGTACAG--CACCATCACC-AA-GC-T-GAAAC-TATA-AC---GCTGTGTTG--TC--TC-AACCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAGAaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|5 : -AA-TAT-TGAAGGT-TA-CCCAGTA-AG--CACCATCACC-AA-GCGT-AAACT-AATA-AC----CTGTGTTG--TTCCTC-AACCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAGAT----TC---AA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGA-TACTAATCTTAG-GATATTCT-GGC--A-AGAAG--TATA--C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---T
gi|7 : gataC-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAGATT-TTTCC--AA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA-TATTAC--TA-G-GATATTCT-GGC-AG-AGAAG--TA-A--C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTGATC-CAACG--AAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGAATACA----AA-G-TATATTCT-GGCCCG-AAAAG---A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAGTGGAC---------A--CCA---TTATCACCAGACGAC--G-CTGGAGATGGA-TAGGCAA-CTT-ACTCCA--AAAAGA-----GTCACAGTCAGT
gi|6 : a-TTTCC--AA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAAATACT----TA-G-GATATTCT-GGCCAG-AGAAAA-TA-A--C--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGATTGA-TAGGACA-TGT-CCTACG--AAAA-AAAAACACCCCAGTCAATtacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAAATACT----TA-G-GATATTTT-GGCCAG-AGAAGA-TA-A--C--C
gi|12 : GGACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGGATGAGACA-TGT-CTT-CG--AAAA-A-----TCC
gi|13 : A--CCA---TCATTACCAATCGCC--G-ATGGAGATGGA-TAGGACA-TGT-CCTTCG--AAAA-A-----TCCattcatgatcaat
gi|16 : -ATGGAGATGGA-TAGGACA-TGT-CCTTCGAAAAAA-A-----ACC-CAGTCAAcattcatga
gi|15 : ATGGA-TAGGACA-TGT-CCTACG--AAAA-A-----A
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG
Alignments
lowQualScore : 555555 1 1 22 44444444444444444444 2 222 11 2 4444 2 1 11 22222 2 11 11 1 1 11 111 222 11 11111 111 111 111 33333333
lowQualScore : 777777 5 5 0 11 0 44 22 66666666666666666666 7 22 3 1 888 44 3 1 11 6 3333 7 3 2 44 6 44444 6 7 3 44 6 44 1 6 7 7 0 6 99 8 5 11 1 111 8 8 8 0 8 666 8 8 11 8 8 5 1 5 5 33 5 666 5 5 77 88 5 77 22222 777 5 5 6 5 000 0 66 1 5 5 1 5 333 2 77 555 77 5 4 4 4 4 1 66 9999 55555555 5
lowQualScore : ...... . . . .. . .. .. .................... . .. . . ... .. . . .. . .... . . . .. . ..... . . . .. . .. . . . . . . .. . . .. . ... . . . . . ... . . .. . . . . . . .. . ... . . .. .. . .. ..... ... . . . . ... . .. . . . . . ... . .. ... .. . . . . . . .. .... ........ .
lowQualScore : 555555 0 0 7 77 7 77 00 77777777777777777777 3 00 7 0 333 77 7 0 77 7 3333 3 3 3 77 7 33333 7 3 7 77 7 77 0 7 3 3 0 0 22 0 0 00 0 000 0 0 0 8 0 666 0 0 00 0 0 7 7 7 7 99 7 111 7 7 55 44 0 55 55555 111 0 0 5 0 999 4 99 7 7 7 0 7 888 5 99 777 99 0 4 4 4 4 0 11 4444 00000000 7
consensus : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-TGGACTCTTAATGT-GGAAATGCCTGCTC-CCGGTTAAGGTTCA-ATGATGAANAACTACGC----CAGACAGACA-ACTTCACAATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAAG-GGCAATCCACAGCAGAACTTGGTAAGGCCAGGAGAGTATTTAGAGAAAATGA-ATAAACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-C-AAGCT-GAAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTC-AACCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
Reference ( family-3833 ) : GAGAAGAC------GCTGCCAAACATACCGGAGAGNAGGTGGGTCTGCNATNNAAGTACCAAGGCCAGAACGGAGACGTTGAACTCTTAANNTAGGAAATGCCNGCTCGCCGGTTAAGGTTCATATGATNAGNAACTACGCGGCGCAGACAGACACACTTTACAATACCTAGGTAGCATCAATCTACATCAGAGGGCGGCACAAAGGAAGTGGCAATCCACAGCAGAACTTNGTAAGGCCAGGAGAGTATTTAGAGAAAATGA-AT-AACATCTGGAGGTCT-ACCCAGTACA--GCACCANCAC-C-AAGCT-GAAA-CTA-TAA-CAG-GCTGTG-TTG-T--CTC-AACCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACGTTGAACTCTTAAATTAGGAAATGCCTACTC-CCGATTAAGA-TCATATGATGAGAAACTACGC----CAGAC-GACACACTTTAC-ATACCTAGGTAGCATC-ATCTACAT-AGAGGGCGGCACAAAGG-AGTGAC-ATCCACA-CAG-ACTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAATGA-ACAAACA-CTGGAGGTCT-ACC--ATACA--GCACCAACAC-CAAAGCTGGAAA-CTA-T-A-CAG-GCTGTG-TTG-T--CTCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAG-ACCTTTTCCAA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGA-----ATACG--TAGTGATATTTTGGGCCAG-AGAAG-A-TAAC--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCT-GGCATAGGACATTGTCCCTTCG--AATACCCCAACCCCCCCCCC-CAGTCAAT
gi|12 : GACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGG-ATGAGACA-TGT--CTTCG---AAA----AA--------TC-CATTCAaaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|13 : gA--CCA---TCATTACCAATCGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTTCG--AAAA----AT--------CC-CATTCAtgatcaat
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAA-----ATACT--TAG-GATATTTT-GGCCAG-AGAAG-A-TAAC--Ctga
gi|15 : AT-GG-ATAGGACA-TGT-CCTACG--AAAA----AA--------
gi|16 : -ATGGAGAT-GG-ATAGGACA-TGT-CCTTCGAAAAAA----AA--------CC-CAGTCAAaaaaacccataacagtcag
gi|2 : GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG-------------------ACTCT-AATGT-GGAAATACCAGCTCGC-GGTTAAGGTTCA-ATGATTAATAACTA-GCGGCGCAGACAGACA-ACTT-ACAATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAG-GGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAGAAATGGA-ATAAACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACAA-AAGCT-GAAGTCTA-TAACCAGAGTTGTGTTTGTT--TTC-AACCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAGTCTC-TCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGA-----ATACG--TAG-GATATTCT-GACTAGTAGAAG-GTTAACAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGT-GG-ATAGGACA-TGT-CCTACA--AAAA----AA--------
gi|3 : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGATGG-CTCTTAATGT-GGAAATGCCTGCTC--CGGTTAAGGT-CA-ATGATGAAGAACTACGC----CAGACAGACA-ACTTCACA-TACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTAGG--GCA-TCCACAGCAGA-CTTGGTAAGGCCAGGAGAGTATTTAGAG-AAATGA-AT-AACATCTGGAGGTCT-ACCGAGTGCA--GCACCAACAC-C-AAGCT-GAAG-TTA-TAC-CAGAGCTGTG-TTA-T--TTC-AACCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCTAA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGA-----ATACT--TTG-GATATTCT-GGCTAA-AGAAG-G-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-TTAGGACA-TGT-CCTACG--AAAA----AA--------CCTTAGTCAATaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTG-ATC-CAACGAAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGA-----ATACA--AAG-TATATTCT-GGCCCG-AAAAG-A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAG---------TGGACA--CCA---TTATCACCAGACGAC--G-CTGGAGAT-GG-ATAGGCAA-CTT-ACTCCA--AAAA----GAGT------CA-CAGTCAGT
gi|5 : a-AATAT-TGAAGGT-T-ACCCAGTA-A--GCACCATCAC-C-AAGCG-TAAA-CTAATAA-C----CTGTG-TTG-TTCCTC-AACCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAG-ATT-----CAA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGATACTAAT-CT--TAG-GATATTCT-GGC--A-AGAAGTA-TA-C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---Ttacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|6 : gata-TTTCCAA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAA-A-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGAT-TG-ATAGGACA-TGT-CCTACG--AAAA----AAAAACAC--CC-CAGTCAAT
gi|7 : C-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAG-ATT-TTTCCAA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA------TATTACTAG-GATATTCT-GGC-AG-AGAAG---TAAC--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|9 : TGATAT-AATATCTGAAGGTCT-ACCCAGTACA--GCACCATCAC-C-AAGCT-GAAA-CTA-TAA-C---GCTGTG-TTG-T--CTC-AACCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAG-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG
Alignments
lowQualScore : 222222 1 1 11 666666666666666666666 1 2 1 2222 1 1 2 11 1 1 2 2 1 11 222222 11 11111 111 111 111 33333333
lowQualScore : 999999 5 5 77 000000000000000000000 7 3 6 3 3 1 8888 6 7 3 2 3 6 99 3 6 2 3 6 3 6 7 6 8 0 99 8 5 11 1 8 8 8 8 8 444444 8 8 11 8 8 5 1 5 5 33 5 666 5 5 77 88 5 77 22222 777 5 5 6 5 000 0 66 1 5 5 1 5 333 2 77 555 77 5 4 4 4 4 1 66 9999 55555555 5
lowQualScore : ...... . . .. ..................... . . . . . . .... . . . . . . .. . . . . . . . . . . . .. . . .. . . . . . . ...... . . .. . . . . . . .. . ... . . .. .. . .. ..... ... . . . . ... . .. . . . . . ... . .. ... .. . . . . . . .. .... ........ .
lowQualScore : 555555 0 0 00 000000000000000000000 3 3 7 7 3 0 3333 7 3 3 0 7 7 33 3 7 3 7 7 7 7 3 0 0 8 22 0 0 00 4 0 0 0 0 0 666666 0 0 00 0 0 7 7 7 7 99 7 111 7 7 55 44 0 55 55555 111 0 0 5 0 999 4 99 7 7 7 0 7 888 5 99 777 99 0 4 4 4 4 0 11 4444 00000000 7
consensus : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T-GG-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTTCACA-TACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGCA-TCCACAGCAGA-CTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-TGAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
Reference ( family-3833 ) : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T-GGACTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGTTCA-ATGATGAANAACTA----CGCCAGACAGACA-ACTTCACAATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAAGGGCAATCCACAGCAGAACTTGGTAAGGCCAGGAGAGTATTTAGAGAAAATGAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACG-TTGAACTCTTAAATTAGGAAATGCCTACTCCCGATTAAGAT-CATATGATGAGAAACTA----CGCCAGAC-GACACACTTTACA-TACCTAGGTAGCATC-ATCTACAT-AGAGGGCGGCACAAAGGAGTGACA-TCCACA-CAGA-CTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAATGAACA-AACA-CTGGAGGTCT-ACC--ATACA--GCACCAACAC-CAAAGCTGGAAA-CTA-TA--CAG-GCTGTG-TTG-T--CTCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAG-ACCTTTTCCAA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGA-----ATACG--TAGTGATATTTTGGGCCAG-AGAAG-A-TAAC--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCT-GGCATAGGACATTGTCCCTTCG--AATACCCCAACCCCCCCCCC-CAGTCAAT
gi|12 : GACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGG-ATGAGACA-TGT--CTTCG---AAA----AA--------TC-CATTCAaaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|13 : gA--CCA---TCATTACCAATCGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTTCG--AAAA----AT--------CC-CATTCAtgatcaat
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAA-----ATACT--TAG-GATATTTT-GGCCAG-AGAAG-A-TAAC--Ctga
gi|15 : AT-GG-ATAGGACA-TGT-CCTACG--AAAA----AA--------
gi|16 : -ATGGAGAT-GG-ATAGGACA-TGT-CCTTCGAAAAAA----AA--------CC-CAGTCAAaaaaacccataacagtcag
gi|2 : GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG---A-----------------CTCT-AATGT-GGAAATACCAGCTCGCGGTTAAGGTTCA-ATGATTAATAACTAGCGGCGC-AGACAGACA-ACTT-ACAATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAGGGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAGAAATGGAATA-AACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACAAAA-GCTG-AAGTCTA-TAACCAGAGTTGTGTTTGTT--TTCAA-CCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAGTCTC-TCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGA-----ATACG--TAG-GATATTCT-GACTAGTAGAAG-GTTAACAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGT-GG-ATAGGACA-TGT-CCTACA--AAAA----AA--------
gi|3 : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGAT-GG-CTCTTAATGT-GGAAATGCCTGCTCC-GGTTAAGGT-CA-ATGATGAAGAACTA----CGCCAGACAGACA-ACTTCACA-TACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTA-GGGCA-TCCACAGCAGA-CTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-TGAATA-A-CATCTGGAGGTCT-ACCGAGTGCA--GCACCAACAC-CAA-GCTG-AAG-TTA-TAC-CAGAGCTGTG-TTA-T--TTCAA-CCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCTAA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGA-----ATACT--TTG-GATATTCT-GGCTAA-AGAAG-G-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-TTAGGACA-TGT-CCTACG--AAAA----AA--------CCTTAGTCAATaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTG-ATC-CAACGAAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGA-----ATACA--AAG-TATATTCT-GGCCCG-AAAAG-A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAG---------TGGACA--CCA---TTATCACCAGACGAC--G-CTGGAGAT-GG-ATAGGCAA-CTT-ACTCCA--AAAA----GAGT------CA-CAGTCAGT
gi|5 : aATA-AATAT-TGAAGGT-T-ACCCAGTA-A--GCACCATCAC-CAA-GCGT-AAA-CTAATAA-C----CTGTG-TTG-TTCCTCAA-CCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAG-ATT-----CAA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGATACTAAT-CT--TAG-GATATTCT-GGC--A-AGAAGTA-TA-C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---Ttacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|6 : g-TTTCCAA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAA-A-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGAT-TG-ATAGGACA-TGT-CCTACG--AAAA----AAAAACAC--CC-CAGTCAAT
gi|7 : C-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAG-ATT-TTTCCAA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA------TATTACTAG-GATATTCT-GGC-AG-AGAAG---TAAC--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|9 : ATATAATATCTGAAGGTCT-ACCCAGTACA--GCACCATCAC-CAA-GCTG-AAA-CTA-TAA-C---GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAG-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG
Alignments
lowQualScore : 222222 1 1 11 555555555555555555555 1 1 1 2222 1 1 11 1 111 1 111 11 222222 11 11111 111 111 111 33333333
lowQualScore : 999999 5 5 77 222222222222222222222 7 3 6 3 3 1 8888 6 7 3 3 6 6 99 3 6 555 6 3 6 7 777 8 0 99 8 5 11 1 8 8 8 8 8 444444 8 8 11 8 8 5 1 5 5 33 5 666 5 5 77 88 5 77 22222 777 5 5 6 5 000 0 66 1 5 5 1 5 333 2 77 555 77 5 4 4 4 4 1 66 9999 55555555 5
lowQualScore : ...... . . .. ..................... . . . . . . .... . . . . . . .. . . ... . . . . ... . . .. . . .. . . . . . . ...... . . .. . . . . . . .. . ... . . .. .. . .. ..... ... . . . . ... . .. . . . . . ... . .. ... .. . . . . . . .. .... ........ .
lowQualScore : 555555 0 0 00 777777777777777777777 3 3 7 3 3 0 3333 7 3 3 3 7 7 33 3 7 333 7 3 7 3 777 0 8 22 0 0 00 4 0 0 0 0 0 666666 0 0 00 0 0 7 7 7 7 99 7 111 7 7 55 44 0 55 55555 111 0 0 5 0 999 4 99 7 7 7 0 7 888 5 99 777 99 0 4 4 4 4 0 11 4444 00000000 7
consensus : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T-G--CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
Reference ( family-3833 ) : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-TGG--CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACG-TTGAACTCTTAAATTAGGAAATGCCTACTCCCGATTAAGAT-CATATGATGAGAAACTA----CGCCAGAC-GACACACTT-TACATACCTAGGTAGCATC-ATCTACAT-AGAGGGCGGCACAAAGGAGTGAC-ATCCACA-CAG-ACTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAAT-GAACA-AACA-CTGGAGGTCT-ACC--ATACA--GCACCAACAC-CAAAGCTGGAAA-CTA-TA--CAG-GCTGTG-TTG-T--CTCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAG-ACCTTTTCCAA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGA-----ATACG--TAGTGATATTTTGGGCCAG-AGAAG-A-TAAC--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCT-GGCATAGGACATTGTCCCTTCG--AATACCCCAACCCCCCCCCC-CAGTCAAT
gi|12 : GACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGG-ATGAGACA-TGT--CTTCG---AAA----AA--------TC-CATTCAaaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|13 : gA--CCA---TCATTACCAATCGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTTCG--AAAA----AT--------CC-CATTCAtgatcaat
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAA-----ATACT--TAG-GATATTTT-GGCCAG-AGAAG-A-TAAC--Ctga
gi|15 : AT-GG-ATAGGACA-TGT-CCTACG--AAAA----AA--------
gi|16 : -ATGGAGAT-GG-ATAGGACA-TGT-CCTTCGAAAAAA----AA--------CC-CAGTCAAaaaaacccataacagtcag
gi|2 : GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG---A-----------------CTCT-AATGT-GGAAATACCAGCTCGCGGTTAAGGTTCA-ATGATTAATAACTAGCGGCGC-AGACAGACA-ACTTACA-ATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAGGGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAGAAA-TGGAATA-AACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACAAAA-GCTG-AAGTCTA-TAACCAGAGTTGTGTTTGTT--TTCAA-CCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAGTCTC-TCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGA-----ATACG--TAG-GATATTCT-GACTAGTAGAAG-GTTAACAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGT-GG-ATAGGACA-TGT-CCTACA--AAAA----AA--------
gi|3 : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGATGG--CTCTTAATGT-GGAAATGCCTGCTCC-GGTTAAGGT-CA-ATGATGAAGAACTA----CGCCAGACAGACA-ACTT-CACATACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTAGGG-C-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-A-CATCTGGAGGTCT-ACCGAGTGCA--GCACCAACAC-CAA-GCTG-AAG-TTA-TAC-CAGAGCTGTG-TTA-T--TTCAA-CCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCTAA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGA-----ATACT--TTG-GATATTCT-GGCTAA-AGAAG-G-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-TTAGGACA-TGT-CCTACG--AAAA----AA--------CCTTAGTCAATaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTG-ATC-CAACGAAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGA-----ATACA--AAG-TATATTCT-GGCCCG-AAAAG-A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAG---------TGGACA--CCA---TTATCACCAGACGAC--G-CTGGAGAT-GG-ATAGGCAA-CTT-ACTCCA--AAAA----GAGT------CA-CAGTCAGT
gi|5 : aATA-AATAT-TGAAGGT-T-ACCCAGTA-A--GCACCATCAC-CAA-GCGT-AAA-CTAATAA-C----CTGTG-TTG-TTCCTCAA-CCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAG-ATT-----CAA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGATACTAAT-CT--TAG-GATATTCT-GGC--A-AGAAGTA-TA-C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---Ttacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|6 : g-TTTCCAA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAA-A-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGAT-TG-ATAGGACA-TGT-CCTACG--AAAA----AAAAACAC--CC-CAGTCAAT
gi|7 : C-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAG-ATT-TTTCCAA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA------TATTACTAG-GATATTCT-GGC-AG-AGAAG---TAAC--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|9 : ATATAATATCTGAAGGTCT-ACCCAGTACA--GCACCATCAC-CAA-GCTG-AAA-CTA-TAA-C---GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAG-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG
Alignments
lowQualScore : 222222 1 1 11 6666666666666666666666 1 1 1 2222 1 1 11 1 111 1 111 11 222222 11 11111 111 111 111 33333333
lowQualScore : 999999 5 5 77 9999999999999999999999 7 3 6 3 3 1 8888 6 7 3 3 6 6 99 3 6 555 6 3 6 7 777 8 0 99 8 5 11 1 8 8 8 8 8 444444 8 8 11 8 8 5 1 5 5 33 5 666 5 5 77 88 5 77 22222 777 5 5 6 5 000 0 66 1 5 5 1 5 333 2 77 555 77 5 4 4 4 4 1 66 9999 55555555 5
lowQualScore : ...... . . .. ...................... . . . . . . .... . . . . . . .. . . ... . . . . ... . . .. . . .. . . . . . . ...... . . .. . . . . . . .. . ... . . .. .. . .. ..... ... . . . . ... . .. . . . . . ... . .. ... .. . . . . . . .. .... ........ .
lowQualScore : 555555 0 0 00 7777777777777777777777 3 3 7 3 3 0 3333 7 3 3 3 7 7 33 3 7 333 7 3 7 3 777 0 8 22 0 0 00 4 0 0 0 0 0 666666 0 0 00 0 0 7 7 7 7 99 7 111 7 7 55 44 0 55 55555 111 0 0 5 0 999 4 99 7 7 7 0 7 888 5 99 777 99 0 4 4 4 4 0 11 4444 00000000 7
consensus : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
Reference ( family-3833 ) : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACG-TTGAA-CTCTTAAATTAGGAAATGCCTACTCCCGATTAAGAT-CATATGATGAGAAACTA----CGCCAGAC-GACACACTT-TACATACCTAGGTAGCATC-ATCTACAT-AGAGGGCGGCACAAAGGAGTGAC-ATCCACA-CAG-ACTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAAT-GAACA-AACA-CTGGAGGTCT-ACC--ATACA--GCACCAACAC-CAAAGCTGGAAA-CTA-TA--CAG-GCTGTG-TTG-T--CTCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAG-ACCTTTTCCAA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGA-----ATACG--TAGTGATATTTTGGGCCAG-AGAAG-A-TAAC--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCT-GGCATAGGACATTGTCCCTTCG--AATACCCCAACCCCCCCCCC-CAGTCAAT
gi|12 : GACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGG-ATGAGACA-TGT--CTTCG---AAA----AA--------TC-CATTCAaaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|13 : gA--CCA---TCATTACCAATCGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTTCG--AAAA----AT--------CC-CATTCAtgatcaat
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAA-----ATACT--TAG-GATATTTT-GGCCAG-AGAAG-A-TAAC--Ctga
gi|15 : AT-GG-ATAGGACA-TGT-CCTACG--AAAA----AA--------
gi|16 : -ATGGAGAT-GG-ATAGGACA-TGT-CCTTCGAAAAAA----AA--------CC-CAGTCAAaaaaacccataacagtcag
gi|2 : GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG---A------------------CTCT-AATGT-GGAAATACCAGCTCGCGGTTAAGGTTCA-ATGATTAATAACTAGCGGCGC-AGACAGACA-ACTTACA-ATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAGGGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAGAAA-TGGAATA-AACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACAAAA-GCTG-AAGTCTA-TAACCAGAGTTGTGTTTGTT--TTCAA-CCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAGTCTC-TCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGA-----ATACG--TAG-GATATTCT-GACTAGTAGAAG-GTTAACAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGT-GG-ATAGGACA-TGT-CCTACA--AAAA----AA--------
gi|3 : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGAT---GGCTCTTAATGT-GGAAATGCCTGCTCC-GGTTAAGGT-CA-ATGATGAAGAACTA----CGCCAGACAGACA-ACTT-CACATACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTAGGG-C-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-A-CATCTGGAGGTCT-ACCGAGTGCA--GCACCAACAC-CAA-GCTG-AAG-TTA-TAC-CAGAGCTGTG-TTA-T--TTCAA-CCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCTAA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGA-----ATACT--TTG-GATATTCT-GGCTAA-AGAAG-G-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-TTAGGACA-TGT-CCTACG--AAAA----AA--------CCTTAGTCAATaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTG-ATC-CAACGAAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGA-----ATACA--AAG-TATATTCT-GGCCCG-AAAAG-A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAG---------TGGACA--CCA---TTATCACCAGACGAC--G-CTGGAGAT-GG-ATAGGCAA-CTT-ACTCCA--AAAA----GAGT------CA-CAGTCAGT
gi|5 : aATA-AATAT-TGAAGGT-T-ACCCAGTA-A--GCACCATCAC-CAA-GCGT-AAA-CTAATAA-C----CTGTG-TTG-TTCCTCAA-CCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAG-ATT-----CAA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGATACTAAT-CT--TAG-GATATTCT-GGC--A-AGAAGTA-TA-C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---Ttacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|6 : g-TTTCCAA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAA-A-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGAT-TG-ATAGGACA-TGT-CCTACG--AAAA----AAAAACAC--CC-CAGTCAAT
gi|7 : C-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAG-ATT-TTTCCAA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA------TATTACTAG-GATATTCT-GGC-AG-AGAAG---TAAC--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|9 : ATATAATATCTGAAGGTCT-ACCCAGTACA--GCACCATCAC-CAA-GCTG-AAA-CTA-TAA-C---GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAG-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG
Alignments
lowQualScore : 222222 1 1 11 6666666666666666666666 1 1 1 2222 1 1 11 1 111 1 111 11 222222 11 11111 111 111 111 33333333
lowQualScore : 999999 5 5 77 9999999999999999999999 7 3 6 3 3 1 8888 6 7 3 3 6 6 99 3 6 555 6 3 6 7 777 8 0 99 8 5 11 1 8 8 8 8 8 444444 8 8 11 8 8 5 1 5 5 33 5 666 5 5 77 88 5 77 22222 777 5 5 6 5 000 0 66 1 5 5 1 5 333 2 77 555 77 5 4 4 4 4 1 66 9999 55555555 5
lowQualScore : ...... . . .. ...................... . . . . . . .... . . . . . . .. . . ... . . . . ... . . .. . . .. . . . . . . ...... . . .. . . . . . . .. . ... . . .. .. . .. ..... ... . . . . ... . .. . . . . . ... . .. ... .. . . . . . . .. .... ........ .
lowQualScore : 555555 0 0 00 7777777777777777777777 3 3 7 3 3 0 3333 7 3 3 3 7 7 33 3 7 333 7 3 7 3 777 0 8 22 0 0 00 4 0 0 0 0 0 666666 0 0 00 0 0 7 7 7 7 99 7 111 7 7 55 44 0 55 55555 111 0 0 5 0 999 4 99 7 7 7 0 7 888 5 99 777 99 0 4 4 4 4 0 11 4444 00000000 7
consensus : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
Reference ( family-3833 ) : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACG-TTGAA-CTCTTAAATTAGGAAATGCCTACTCCCGATTAAGAT-CATATGATGAGAAACTA----CGCCAGAC-GACACACTT-TACATACCTAGGTAGCATC-ATCTACAT-AGAGGGCGGCACAAAGGAGTGAC-ATCCACA-CAG-ACTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAAT-GAACA-AACA-CTGGAGGTCT-ACC--ATACA--GCACCAACAC-CAAAGCTGGAAA-CTA-TA--CAG-GCTGTG-TTG-T--CTCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAG-ACCTTTTCCAA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGA-----ATACG--TAGTGATATTTTGGGCCAG-AGAAG-A-TAAC--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCT-GGCATAGGACATTGTCCCTTCG--AATACCCCAACCCCCCCCCC-CAGTCAAT
gi|12 : GACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGG-ATGAGACA-TGT--CTTCG---AAA----AA--------TC-CATTCAaaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|13 : gA--CCA---TCATTACCAATCGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTTCG--AAAA----AT--------CC-CATTCAtgatcaat
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAA-----ATACT--TAG-GATATTTT-GGCCAG-AGAAG-A-TAAC--Ctga
gi|15 : AT-GG-ATAGGACA-TGT-CCTACG--AAAA----AA--------
gi|16 : -ATGGAGAT-GG-ATAGGACA-TGT-CCTTCGAAAAAA----AA--------CC-CAGTCAAaaaaacccataacagtcag
gi|2 : GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG---A------------------CTCT-AATGT-GGAAATACCAGCTCGCGGTTAAGGTTCA-ATGATTAATAACTAGCGGCGC-AGACAGACA-ACTTACA-ATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAGGGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAGAAA-TGGAATA-AACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACAAAA-GCTG-AAGTCTA-TAACCAGAGTTGTGTTTGTT--TTCAA-CCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAGTCTC-TCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGA-----ATACG--TAG-GATATTCT-GACTAGTAGAAG-GTTAACAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGT-GG-ATAGGACA-TGT-CCTACA--AAAA----AA--------
gi|3 : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGAT---GGCTCTTAATGT-GGAAATGCCTGCTCC-GGTTAAGGT-CA-ATGATGAAGAACTA----CGCCAGACAGACA-ACTT-CACATACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTAGGG-C-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-A-CATCTGGAGGTCT-ACCGAGTGCA--GCACCAACAC-CAA-GCTG-AAG-TTA-TAC-CAGAGCTGTG-TTA-T--TTCAA-CCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCTAA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGA-----ATACT--TTG-GATATTCT-GGCTAA-AGAAG-G-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-TTAGGACA-TGT-CCTACG--AAAA----AA--------CCTTAGTCAATaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTG-ATC-CAACGAAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGA-----ATACA--AAG-TATATTCT-GGCCCG-AAAAG-A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAG---------TGGACA--CCA---TTATCACCAGACGAC--G-CTGGAGAT-GG-ATAGGCAA-CTT-ACTCCA--AAAA----GAGT------CA-CAGTCAGT
gi|5 : aATA-AATAT-TGAAGGT-T-ACCCAGTA-A--GCACCATCAC-CAA-GCGT-AAA-CTAATAA-C----CTGTG-TTG-TTCCTCAA-CCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAG-ATT-----CAA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGATACTAAT-CT--TAG-GATATTCT-GGC--A-AGAAGTA-TA-C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---Ttacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|6 : g-TTTCCAA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAA-A-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGAT-TG-ATAGGACA-TGT-CCTACG--AAAA----AAAAACAC--CC-CAGTCAAT
gi|7 : C-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAG-ATT-TTTCCAA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA------TATTACTAG-GATATTCT-GGC-AG-AGAAG---TAAC--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|9 : ATATAATATCTGAAGGTCT-ACCCAGTACA--GCACCATCAC-CAA-GCTG-AAA-CTA-TAA-C---GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAG-A
blockSeqs : TAACAG . . T AAGACGGAGACGATGG T . C T . T GCGG C A . A C C AA . C GCA G A G A TG T AT A C GG A A . . T A ACCAGA T T TC . G C C A G AC T TC G C AC GC T CA TACTA TAC . . C T GT AG C . . T G CCC G GC TAC . T G . . . T AA . AAACAC T
blockSeqs : G A . . . . . G . . A . . . . G . C C G . G A T . TC . G . A . . . . . CCAGA . . . . . . C . . AC . TT . . C C . C . T . . T . TA . C . . A . T T . A . . . . . . T . . GT .
blockSeqs : . TC . C . T . . . . . AC . . . . . . T . . GG . CA . . C T . C . G . . T . A . C . . G . . G . . . . . . . . A . . . .
blockSeqs : . T . C . T . . . . . AC . . . . . . C . . NN . TT . . C C . C . T . . C . G . T . . T . . G . . . . . . . . T . . . .
blockSeqs : . C . . C . TT . . C T . C . A . . C . A . C . . A . . G . . . . . . . . A . . . .
blockSeqs : . . . . A . . . . C . . . . T . . . . A . T . . T . . . . . . . . . . A . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . C . . .
blockSeqs : . . . . A . . .
blockSeqCons : TC AC**** TT* C* ** **** ********
originalCons : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAA-CAGAGCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
finalCons : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TAAC----GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATCTT-TCCAA-ATTAC-GATCCTTC-CA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG
Alignments
lowQualScore : 222222 1 1 11 6666666666666666666666 1 1 1 2222 1 1 11 1 1 1 1 111 11 3333 11 11111 111 111 111 33333333
lowQualScore : 999999 5 5 77 9999999999999999999999 7 3 6 3 3 1 8888 6 7 3 3 6 6 99 3 6 2 3 6 3 6 7 777 88 99 8 5 11 1 8 8 8 8 8 8 1111 8 8 11 8 8 5 1 5 5 33 5 666 5 5 77 88 5 77 22222 777 5 5 6 5 000 0 66 1 5 5 1 5 333 2 77 555 77 5 4 4 4 4 1 66 9999 55555555 5
lowQualScore : ...... . . .. ...................... . . . . . . .... . . . . . . .. . . . . . . . . ... .. .. . . .. . . . . . . . .... . . .. . . . . . . .. . ... . . .. .. . .. ..... ... . . . . ... . .. . . . . . ... . .. ... .. . . . . . . .. .... ........ .
lowQualScore : 555555 0 0 00 7777777777777777777777 3 3 7 3 3 0 3333 7 3 3 3 7 7 33 3 7 0 3 7 3 7 3 777 88 22 0 0 00 4 0 0 0 0 0 0 0000 0 0 00 0 0 7 7 7 7 99 7 111 7 7 55 44 0 55 55555 111 0 0 5 0 999 4 99 7 7 7 0 7 888 5 99 777 99 0 4 4 4 4 0 11 4444 00000000 7
consensus : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TA-AC----GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
Reference ( family-3833 ) : GAGAAGACTAACAGGCTGCCAAACATACCGGAAAACAGGTGGGTCTACG-TATAAGTACCAAG---AGGACGGAGACG-T---G-CTCTTAATGT-GGAAATGCCTGCTCCCGGTTAAGGT-CA-ATGATGAANAACTA----CGCCAGACAGACA-ACTT-CACATACCTAGGTAGCATCGATC-ACATCAGAGGGCGGCACAAAGGAGGGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAATA-AACATCTGGAGGTCT-ACCCAGTACA--GCACCAACAC-CAA-GCTG-AAA-CTA-TA-AC----GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATCAGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCCAA-ATTAC-GATCCTT-CCA-CACAA-CATGC-CTCCGCCGA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAG-A-TAAC--CAACGAA-GACCTTA-TNAATA-GATGCAAGCAAGAAGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTNCG--AAAA----AA--------CC-CAGTCAAT
gi|1 : GAGAAGAC------GCTGCCAAACATACCGGAAAAAAGGTGGGTCTGCAATATAAGTACCAAAGCCAGAACGGAGACG-TTGAA-CTCTTAAATTAGGAAATGCCTACTCCCGATTAAGAT-CATATGATGAGAAACTA----CGCCAGAC-GACACACTT-TACATACCTAGGTAGCATC-ATCTACAT-AGAGGGCGGCACAAAGGAGTGAC-ATCCACA-CAG-ACTTGGTAAGGCCAGGAGA-T-TTTAGAGAAAAT-GAACA-AACA-CTGGAGGTCT-ACC--ATACA--GCACCAACAC-CAAAGCTGGAAA-CTA-TACAG----GCTGTG-TTG-T--CTCAAACCCT-CC-TATATGGATCAGAAT-GCTGGAGAAT-TACAGAAACAG-ACCTTTTCCAA-ATTAC-GATCCTT---A-CACAA-CATAC-CTCCGCTGA-----ATACG--TAGTGATATTTTGGGCCAG-AGAAG-A-TAAC--CAA-GAACGACCTTAGTAAATA-GA-GCAAGCAA-AAGACA---T-GGTA--CCA---TCATTA-CAAACGCCAGA-ATGGAGCT-GGCATAGGACATTGTCCCTTCG--AATACCCCAACCCCCCCCCC-CAGTCAAT
gi|12 : GACACCCTGGGTA--CCAA--TCATTACCAATCGCC--G-AT-GAGATGGG-ATGAGACA-TGT--CTTCG---AAA----AA--------TC-CATTCAaaccaaaacagcggctgcactggacacagaaggcaagagaaatggacgagggaggccaagaacatcatgggaaggaccggtactgagagccgaagacatataaagctgtgcatgcagacccggcgataactaacaagcttggccgcaggacaggagagaacttttgctttgccctgacccaactcacccaccgggtgtaaaggatgtactgattgatggcaatgtactgctac
gi|13 : gA--CCA---TCATTACCAATCGCC--G-ATGGAGAT-GG-ATAGGACA-TGT-CCTTCG--AAAA----AT--------CC-CATTCAtgatcaat
gi|14 : T-CCA-CACTA-TATGC-CTCCGCTAA-----ATACT--TAG-GATATTTT-GGCCAG-AGAAG-A-TAAC--Ctga
gi|15 : AT-GG-ATAGGACA-TGT-CCTACG--AAAA----AA--------
gi|16 : -ATGGAGAT-GG-ATAGGACA-TGT-CCTTCGAAAAAA----AA--------CC-CAGTCAAaaaaacccataacagtcag
gi|2 : GGAGAGCAGGTGGGTCTACT-TTAAAGTATCAAG---A------------------CTCT-AATGT-GGAAATACCAGCTCGCGGTTAAGGTTCA-ATGATTAATAACTAGCGGCGC-AGACAGACA-ACTTACA-ATAC-TAGGTAGCATCAATC-ACATCAAAGGACGACACAAAGGAAGGGCAATCTACAGTAGAACTTCGTAAGACCAGGAGAGTATTTAGAGAAA-TGGAATA-AACGATTGGAGGTCTAACCCAGTACAGGGCACCCACACAAAA-GCTG-AAGTCTA-TA-ACCAGAGTTGTGTTTGTT--TTCAA-CCCTGCC-TATACGGAGCAGAAT-GCTGGAGGAT-T-CGGAGACAGTCTC-TCTCCAA-ATCAC-GATCCTT-CCAGCGCAA-CATGCACTCCGCCGA-----ATACG--TAG-GATATTCT-GACTAGTAGAAG-GTTAACAGCCACGAA-GAACTTA-ATTATAGGATGTAAGC-AGAAGACAT--TTGGTAGCCCATACTCATTACCAAACACC--GTATGGAGGT-GG-ATAGGACA-TGT-CCTACA--AAAA----AA--------
gi|3 : GAGAAGACTAACAGGCTGC-AAATATAC-GGAAAACACGTGGGTCTACG-TATAAGTACCAAG---AAGACGGAGACGAT---GGCTCTTAATGT-GGAAATGCCTGCTCC-GGTTAAGGT-CA-ATGATGAAGAACTA----CGCCAGACAGACA-ACTT-CACATACCTGGGTAGCATCG-TC-ACATCAGAGGGCGGCACAAAGTA-GGGC-ATCCACAGCAG-ACTTGGTAAGGCCAGGAGAGTATTTAGAGAAA-T-GAAT--AACATCTGGAGGTCT-ACCGAGTGCA--GCACCAACAC-CAA-GCTG-AAG-TTA-TA-CCAGA-GCTGTG-TTA-T--TTCAA-CCCT-CC-TATACGGATCGGAAT-GCTGGAGGAT-TACAGAGACAG-ATC-TTTCTAA-ATCAC-GATCCTT-CCA-TACAA-CATGC-CTCCGCCGA-----ATACT--TTG-GATATTCT-GGCTAA-AGAAG-G-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAACAAGAGGACA---TGGGTA--CCA---TCATTACCAAACGCC--G-ATGGAGAT-GG-TTAGGACA-TGT-CCTACG--AAAA----AA--------CCTTAGTCAATaaaaaacccacagtcatcaagcatgaacaagatgagctttgttgagcatttggcactggacaccaaagacaaagaaggaagggaaagaaggccaagacatgcatggaaaggaaggcacggttgagaacgagataaaaacgcatggccaggcagcctgggggtcattttaaatttaaaagttggtccaggatagacaggagtttgaaggaaactattattgctgccctaacgcacaccagcaacgggtgtaagg
gi|4 : -TATATGGATCCAAGT-GCTGGAGAAT-GACAGAGGTTG-ATC-CAACGAAGATT-C-GATCATT-CCA-CACCA-TTTGC-CTCCGATGA-----ATACA--AAG-TATATTCT-GGCCCG-AAAAG-A-ACTC--CACCGAA-CATCTGC-TGAGAA-GATGCAAGCAAG---------TGGACA--CCA---TTATCACCAGACGAC--G-CTGGAGAT-GG-ATAGGCAA-CTT-ACTCCA--AAAA----GAGT------CA-CAGTCAGT
gi|5 : aATA-AATAT-TGAAGGT-T-ACCCAGTA-A--GCACCATCAC-CAA-GCGT-AAA-CTAATA-AC-----CTGTG-TTG-TTCCTCAA-CCCT-CCCTATA--AATCATAATAGC----AGATGTGGAG-GACAG-ATT-----CAA-ATTACCGATCCTTACCA--ACAATCA-G---TCCGCCGATACTAAT-CT--TAG-GATATTCT-GGC--A-AGAAGTA-TA-C--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---Ttacaagaacgtcactacactggtccccaggtggcaagagaaagagaggaggaccaagaacaacatgtaggagaatagtaaagaataagatgaaggtcatgcatcactcatcggggtcactgactgggatggtttaggataggcagatatatggagggactttgctgcggtcctacataacactgagtgtaacggataatgatgatgacttgtaatacca
gi|6 : g-TTTCCAA-ATTAC-AATCCTT-CTA-TACAA-CATGC-CTCCGCCAA-----ATACT--TAG-GATATTCT-GGCCAG-AGAAA-A-TAAC--CAACGAA-GACCTTA-TAAATA-GATGTAAGCAAGAAGACA---TGGGTA--CCA---TTATTACCAAACGCC--G-ATGGAGAT-TG-ATAGGACA-TGT-CCTACG--AAAA----AAAAACAC--CC-CAGTCAAT
gi|7 : C-TATACGGAATAGAAT-GCTGGAGGAT-TA-AGAGACAG-ATT-TTTCCAA-ATTAC-GATCCTT------ACAA-CATG---TCCGCCGA------TATTACTAG-GATATTCT-GGC-AG-AGAAG---TAAC--CAATGAA-GACCTTA-TTAATA-GATGCAAGCAAGAAGACA---
gi|9 : ATATAATATCTGAAGGTCT-ACCCAGTACA--GCACCATCAC-CAA-GCTG-AAA-CTA-TA-AC----GCTGTG-TTG-T--CTCAA-CCCT-CC-TATACGGATNNNNNN-NNNNNNNNNN-NNNNNNNNNAG-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTGAGAACGAGATAATAGGGACCATTAGTGAAGCTGTCTCAGGATTGACAGGAGTGGAGGAAACTTGTTGCTGCCCTACACTCCACCGGGTGTAAAGGATGATGATGATCCCTATACTAACCTCTAGAGATTCTCTGATTT
Unaligned ( gi|10 ): GGATCATTAACAAAGCTGGCCCAGGATAGGCAGGAGTGAAGGAAACTTGTTTCTGCCCTACACACCACCGGGTGTAAAGGATGATGATGATGTGAGTATTACAGGAAATTCATTA
Unaligned ( gi|11 ): TGGGAGTCATTAACATAGCTGGCCCAGGATAGGCAGGAGTGGAGGAAACTTGTTGCTGCCCTTCACACCACCGGGTGTAAAGTATGATGCTGATGATGTG