lowQualScore : 11111 1111
lowQualScore : 22 1 1 3 1 3 1 1 1 222 1 11 5555 1 11 11 11 66 444444 2 2 1 2 2 11111 2 33 2 2 2 666666 6666
lowQualScore : .. . . . . . . . . ... . .. .... . .. .. .. .. ...... . . . . . ..... . .. . . . ...... ....
lowQualScore : 55 8 8 6 8 6 2 2 2 111 2 66 9999 2 88 88 88 66 888888 1 4 0 4 4 88888 4 22 4 4 4 888888 8888
consensus : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATCTGACT-T-C-----GT-AG--T-TC-CAT-T------TAC--T-TGGTATGATTTAG
Reference ( gi|5 ) : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TGAC-TTC-ATATCTGACT-T-C-----GT-AG--T-TC-CAT-T------TAC--A-TGGTATGATTTAG
gi|8 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TT-ATATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATCTGACT-C-C-----GT-AG--T-TC-CAT-T------TAC--T-TCGTATGATTTA
gi|7 : GCCCTATTT--AC-AC-GAAT-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CGCATTC----TGAC-TTC-ATATCTGACT-T-C-----GT-AG--T-TC-CAT-T------TAC--T-TGGTATGAT
gi|4 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAT--TT-CACAT-T----TGAC-TTC-ATATCTGACT-C-C-----GT-AG--T-TT-CAT-T------T
gi|12 : aGCCCTATCT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GAAT--TC-ACATC--T--GAC--TT-CGC--------------------TCTGACT-T-C-----GT-AG--T-TC-CAT-T------TAC--A-TGGTATGATTnnnnnnnnnnnnnnnn
gi|9 : GCCCTATTT--ACTACCGA---AT-GTGTT-G-T-CA-A---T-GT--GACT--TCCACATC--T--GAC--TT-TACAT-C----TGAT-TTC-A-ATCTGA-T-T-C-----GT-AG--T-TC-CAT-T------TAC--ATTGGTA-GATT
gi|13 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CCGA---T-GT--GACT--TC-ACATC--T--GAC--T---------------------------------T-C-----GT-AG--T-TC-CAT-TTACATGTAC--A-TGGCATGATTTAG
gi|21 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--
gi|24 : GCCCTATTT--AC-AT-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GATT--TC-AC
gi|18 : aGTCCTATTT--AC-AC-GA-T-AT-GATTT---T-CAGA---T-GT--CATT--TC-ACATC--T--GAC--TT-CATA
gi|22 : GCCCTATTT--AC-AC-AA-T-AT-GATTT-G-T-CAGG---T-CT--GACTCGCC-ACATattccatttacgtca
gi|20 : aGCCCTATTT--AC-AT-GA-T-AA-GTTTT-G-T-CATA---T-CT--GACTCGCC-ACA
gi|3 : aaCCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATCTGACT-T-CGTAATGT-AG--T-TC-CAT-T------TAC--T-TGGTATGATTTatc
gi|2 : CCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATCTGACT-T-CGTAATGT-AG--T-TC-CAT-T------TAC--T-TGGTATGATTT
gi|15 : CCCTATTT--AC-AC-GA-T-AG-TTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT---CAT-C----T--------------GACT-T-C-----GT-AG--T-TC-CAT-T------TA
gi|11 : CCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TTAC-TTC-ATATCTGACT-T-C-----GT-AG--T-T--CAT-T------TAC--T-TGGTATGATTT
gi|6 : CCTATTT--AC-AC--A-T-AT-GTTTT-G-T-CAGA---TGGT--GA----TC-ACATC--TCGAAA--TT-CACAT-C----TGAC-TTC-AT-TCTGAC--T-C-----GT-AAGCT-TC-CAT-T------TACTTG-TGATATGATTTAG
gi|10 : CTATTT--AC-AC-GA-T-ATTGTTTT-G-T-CAGA---T-GT--GACT--TC-ACA-C--T--GAC--TT-CGCAT-C----TGACTTTC-ATATCTGACT-T-C-----GTAAG--T-TC---T-T------TAC--T-TGGTATGATTT
gi|1 : CTATT---AC-AC-GAAT-AT-GTTTTCG-TTCAGAGGTT-GT---ACT--TC-ACATTCAT--GACTTTT-TACAT-CTTAGTAAC-TTCGGTATCTGACTGTGC-----GT-AG--T-TCTTAT-T------TA
gi|17 : gagatttTATTT--AT-AC-GA-T-AT-GTTTT-G-T-CAGA---T------ACT--TC-A---------G-----T-TA---------TGAC-TTC-ATATCCGACT-T-C-----GT-AG--T-TC-CAT-T------TAC--
gi|14 : TATTTCGAC-A--GA-TTGT-GTGTT-C-T--AGA---T-GCTGGACTC-TC-ACAT---T--GAC--TT-TACAT-C----TGAC-TTC-GT------------------T-AG--TGTC-CAT-T------TAC--
gi|16 : cgaTTT--AC-AC-GG-T-AT-GTTTT-G-T-CAGA---T-GT--G----------------------------------------C-TTC-ATATCTGACT-T-C-----GT-AG--T-TC-CAT-T------TAC--T-TGGTGTGATTTAGt
gi|23 : TT--AC-AC-GA-T-ATCGTTTT-GAT-CAGA---T-GT--AACT--TC-At
gi|8 : c-G-T-CAGA---T-GT--GAAG--TC-AGATA--T--AAA--GT-CACAT-C----TGAC-ttgacctc
gi|11 : gccctatttacacgatatgtttt-G-T-CAGA---T-GT--GAAG--TC-ACATC--T--GAC--ttcatatctgactccgtagttccatttacttcgtatgattta
gi|7 : cctatttacacgatatgtttt-G-T-CAGA---T-GT--GAAG--TC-ACATC--T--GAC--tttacatcttacttcatatctgacttcgtagttcatttacttggtatgattt
gi|3 : agccctatttacacgaatatgtttt-G-T-CATA---T-GT--GAAG--TC-ACATC--T--GAC--ttcgcattctgacttcatatctgacttcgtagttccatttacttggtatgat
gi|2 : ccctatttacacgatatgttt-G-T-CATA---T-GT--GAAG--TC-ACATC--T--GAC--ttatacatctgacttcatatctgacttcgtaatgtagttccatttacttggtatgattt
gi|4 : ccctatttacacgatatgttt-G-T-CAAA---T-GT--GAAA--TC-AGATG--T--GAA--GT-CACAT-C----TGAC-ttatacatctgacttcatatctgacttcgtaatgtagttccatttacttggtatgattt
gi|12 : agccctatttacacgatatgtttt-G-T-CAGA---T-GT--GAAT--TC-ACATC--T--GAC--ttcatatctgactccgtagtttcatttnnnnnnnnnnnnnnnn
gi|15 : gccctatctacacgatatgtttt-G-T-CAGA---T-GT--GAAG--TC-ACATC--T--GAC--ttcgctctgacttcgtagttccatttacatggtatgatt
gi|13 : ccctatttacacgatagttttt-G-T-CAGA---T-GT--GAAG--TC-ACATC--G--GAC--ttcatctgacttcgtagttccattta
gi|21 : gccctatttacacgatatgtttt-G-T-CAGA---T-GT--GAAG--TC-ACATC--T--GAC--ttcgtagttccatttacatgtacatggcatgatttag
gi|4 : gccctatttacacgatatgtttt-T-CAGA---T-GT--GAAG--TC-ACATC--T--GAC--
gi|19 : agccctatttacacgatatgttttA---T-GT--GACT---C-ACATC--T--GAC--TT-TTTGTCC----TGAT-TTC-GTA-----------------T-AG--T-TC-CATGT------TAC--T-TGGTATGATtttcacatttgacttcatatctgactccgtagtttcatttnnnnnnnnnnnnnnnn
Alignments
lowQualScore : 11111 1111111
lowQualScore : 22 1 1 3 1 3 1 1 1 333 1 22 66 1 333 22 22 4 444444 2 2 2 2 2 11111 2 33 33 2 2 2 1111111
lowQualScore : .. . . . . . . . . ... . .. .. . ... .. .. . ...... . . . . . ..... . .. .. . . . .......
lowQualScore : 44 7 7 5 7 5 7 7 7 000 7 44 55 7 777 66 66 0 888888 2 2 2 2 2 11111 2 11 11 2 2 2 1111111
consensus : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
Reference ( family-381 ) : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
gi|1 : CTATT---AC-AC-GAAT-AT-GTTTTCG-TTCAGAGGTT-GT---ACT--TC-ACATTCAT--GACTTTT-TACAT-CTTAGTAAC-TTCGGTATC-TGACTGTGC-----GT-A--G--T-TCTTAT-TTA
gi|10 : gagatttCTATTT--AC-AC-GA-T-ATTGTTTT-G-T-CAGA---T-GT--GACT--TC-ACA-C--T--GAC--TT-CGCAT-C----TGACTTTC-ATATC-TGACT-T-C-----GTAA--G--T-TC---T-TTAC-T-----TGGTATGATTT
gi|11 : CCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TTAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-T--CAT-TTAC-T-----TGGTATGATTT
gi|12 : GCCCTATCT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GAAT--TC-ACATC--T--GAC--TT-CGC--------------------TC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-A-----TGGTATGATT
gi|13 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CCGA---T-GT--GACT--TC-AC--------------------------------------ATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTACATGTACATGGCATGATTTAG
gi|14 : TATTTCGAC-A--GA-TTGT-GTGTT-C-T--AGA---T-GCTGGACTC-TC-ACAT---T--GAC--TT-TACAT-C----TGAC-TTC-GT-------------------T-A--G--TGTC-CAT-TTAC-T-----
gi|15 : cgaCCCTATTT--AC-AC-GA-T-AG-TTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-C---------------------ATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTA
gi|16 : TTT--AC-AC-GG-T-AT-GTTTT-G-T-CAGA---T-GT--G----------------------------------------C-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTGTGATTTAG
gi|17 : TATTT--AT-AC-GA-T-AT-GTTTT-G-T-CAGA---T-------------------------AC--TT-CAGTT-A----TGAC-TTC-ATATC-CGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-t
gi|18 : GTCCTATTT--AC-AC-GA-T-AT-GATTT---T-CAGA---T-GT--CATT--TC-ACATC--T--GAC--TT-CATA
gi|19 : ATG--T--GAC--T--CACAT-C----TGAC-TTT-TTGTCCTGATT-T-C-----GT-ATAG--T-TC-CATGTTAC-T-----TGGTATGATattccatttacgtca
gi|2 : CCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATC-TGACT-T-CGTAATGT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTT
gi|20 : GCCCTATTT--AC-AT-GA-T-AA-GTTTT-G-T-CATA---T-CT--GACTCGCC-ACA
gi|21 : aaGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--atc
gi|22 : GCCCTATTT--AC-AC-AA-T-AT-GATTT-G-T-CAGG---T-CT--GACTCGCC-ACAT
gi|23 : aTT--AC-AC-GA-T-ATCGTTTT-GAT-CAGA---T-GT--AACT--TC-A---T--T--GAC--CT-C
gi|24 : cGCCCTATTT--AC-AT-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GATT--TC-AC
gi|3 : aCCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATC-TGACT-T-CGTAATGT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTT
gi|4 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAT--TT-CACAT-T----TGAC-TTC-ATATC-TGACT-C-C-----GT-A--G--T-TT-CAT-TT
gi|5 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-A-----TGGTATGATTTAGnnnnnnnnnnnnnnnn
gi|6 : CCTATTT--AC-AC--A-T-AT-GTTTT-G-T-CAGA---TGGT--GA----TC-ACATC--TCGAAA--TT-CACAT-C----TGAC-TTC-AT-TC-TGAC--T-C-----GT-A--AGCT-TC-CAT-TTAC-TTG---TGATATGATTTAG
gi|7 : GCCCTATTT--AC-AC-GAAT-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CGCATTC----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGAT
gi|8 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TT-ATATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-C-C-----GT-A--G--T-TC-CAT-TTAC-T-----TCGTATGATTTA
gi|9 : GCCCTATTT--ACTACCGA---AT-GTGTT-G-T-CA-A---T-GT--GACT--TCCACATC--T--GAC--TT-TACAT-C----TGAT-TTC-A-ATC-TGA-T-T-C-----GT-A--G--T-TC-CAT-TTACAT-----TGGTA-GATT
Alignments
lowQualScore : 11111 1111111
lowQualScore : 22 1 1 3 1 3 1 1 1 333 1 22 66 1 333 22 22 4 444444 2 2 2 2 2 11111 2 33 33 2 2 2 1111111
lowQualScore : .. . . . . . . . . ... . .. .. . ... .. .. . ...... . . . . . ..... . .. .. . . . .......
lowQualScore : 44 7 7 5 7 5 7 7 7 000 7 44 55 7 777 66 66 0 888888 2 2 2 2 2 11111 2 11 11 2 2 2 1111111
consensus : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
Reference ( family-381 ) : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
gi|1 : CTATT---AC-AC-GAAT-AT-GTTTTCG-TTCAGAGGTT-GT---ACT--TC-ACATTCAT--GACTTTT-TACAT-CTTAGTAAC-TTCGGTATC-TGACTGTGC-----GT-A--G--T-TCTTAT-TTA
gi|10 : gagatttCTATTT--AC-AC-GA-T-ATTGTTTT-G-T-CAGA---T-GT--GACT--TC-ACA-C--T--GAC--TT-CGCAT-C----TGACTTTC-ATATC-TGACT-T-C-----GTAA--G--T-TC---T-TTAC-T-----TGGTATGATTT
gi|11 : CCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TTAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-T--CAT-TTAC-T-----TGGTATGATTT
gi|12 : GCCCTATCT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GAAT--TC-ACATC--T--GAC--TT-CGC--------------------TC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-A-----TGGTATGATT
gi|13 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CCGA---T-GT--GACT--TC-AC--------------------------------------ATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTACATGTACATGGCATGATTTAG
gi|14 : TATTTCGAC-A--GA-TTGT-GTGTT-C-T--AGA---T-GCTGGACTC-TC-ACAT---T--GAC--TT-TACAT-C----TGAC-TTC-GT-------------------T-A--G--TGTC-CAT-TTAC-T-----
gi|15 : cgaCCCTATTT--AC-AC-GA-T-AG-TTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-C---------------------ATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTA
gi|16 : TTT--AC-AC-GG-T-AT-GTTTT-G-T-CAGA---T-GT--G----------------------------------------C-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTGTGATTTAG
gi|17 : TATTT--AT-AC-GA-T-AT-GTTTT-G-T-CAGA---T-------------------------AC--TT-CAGTT-A----TGAC-TTC-ATATC-CGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-t
gi|18 : GTCCTATTT--AC-AC-GA-T-AT-GATTT---T-CAGA---T-GT--CATT--TC-ACATC--T--GAC--TT-CATA
gi|19 : ATG--T--GAC--T--CACAT-C----TGAC-TTT-TTGTCCTGATT-T-C-----GT-ATAG--T-TC-CATGTTAC-T-----TGGTATGATattccatttacgtca
gi|2 : CCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATC-TGACT-T-CGTAATGT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTT
gi|20 : GCCCTATTT--AC-AT-GA-T-AA-GTTTT-G-T-CATA---T-CT--GACTCGCC-ACA
gi|21 : aaGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--atc
gi|22 : GCCCTATTT--AC-AC-AA-T-AT-GATTT-G-T-CAGG---T-CT--GACTCGCC-ACAT
gi|23 : aTT--AC-AC-GA-T-ATCGTTTT-GAT-CAGA---T-GT--AACT--TC-A---T--T--GAC--CT-C
gi|24 : cGCCCTATTT--AC-AT-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GATT--TC-AC
gi|3 : aCCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATC-TGACT-T-CGTAATGT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTT
gi|4 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAT--TT-CACAT-T----TGAC-TTC-ATATC-TGACT-C-C-----GT-A--G--T-TT-CAT-TT
gi|5 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-A-----TGGTATGATTTAGnnnnnnnnnnnnnnnn
gi|6 : CCTATTT--AC-AC--A-T-AT-GTTTT-G-T-CAGA---TGGT--GA----TC-ACATC--TCGAAA--TT-CACAT-C----TGAC-TTC-AT-TC-TGAC--T-C-----GT-A--AGCT-TC-CAT-TTAC-TTG---TGATATGATTTAG
gi|7 : GCCCTATTT--AC-AC-GAAT-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CGCATTC----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGAT
gi|8 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TT-ATATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-C-C-----GT-A--G--T-TC-CAT-TTAC-T-----TCGTATGATTTA
gi|9 : GCCCTATTT--ACTACCGA---AT-GTGTT-G-T-CA-A---T-GT--GACT--TCCACATC--T--GAC--TT-TACAT-C----TGAT-TTC-A-ATC-TGA-T-T-C-----GT-A--G--T-TC-CAT-TTACAT-----TGGTA-GATT
blockSeqs : CG T C A T T . A . . G TG CG C C CG . A TC T . C . . GTAAT A TA GC G . G ATGTACA
blockSeqs : . . . . . C . . . . . . CG . C . . A C . . . . . GTAAT . . . . . . TTG
blockSeqs : . . . . . . . . . . . . C . C . . . C . . . . . . . . . . . . AT
blockSeqs : . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . C . . . A . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . G . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . A . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . T . . . T . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . A . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : *** C** ** C*****
originalCons : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
finalCons : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACATC-----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
Alignments
lowQualScore : 11111 1111111
lowQualScore : 22 1 1 3 1 3 1 1 1 333 1 22 66 1 333 22 22 4 444444 2 2 2 2 2 11111 2 33 33 2 2 2 1111111
lowQualScore : .. . . . . . . . . ... . .. .. . ... .. .. . ...... . . . . . ..... . .. .. . . . .......
lowQualScore : 44 7 7 5 7 5 7 7 7 000 7 44 55 7 777 66 66 0 888888 2 2 2 2 2 11111 2 11 11 2 2 2 1111111
consensus : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
Reference ( family-381 ) : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTTAG
gi|1 : CTATT---AC-AC-GAAT-AT-GTTTTCG-TTCAGAGGTT-GT---ACT--TC-ACATTCAT--GACTTTT-TACAT-CTTAGTAAC-TTCGGTATC-TGACTGTGC-----GT-A--G--T-TCTTAT-TTA
gi|10 : gagatttCTATTT--AC-AC-GA-T-ATTGTTTT-G-T-CAGA---T-GT--GACT--TC-ACA-C--T--GAC--TT-CGCAT-C----TGACTTTC-ATATC-TGACT-T-C-----GTAA--G--T-TC---T-TTAC-T-----TGGTATGATTT
gi|11 : CCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TTAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-T--CAT-TTAC-T-----TGGTATGATTT
gi|12 : GCCCTATCT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GAAT--TC-ACATC--T--GAC--TT-CGC--------------------TC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-A-----TGGTATGATT
gi|13 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CCGA---T-GT--GACT--TC-AC--------------------------------------ATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTACATGTACATGGCATGATTTAG
gi|14 : TATTTCGAC-A--GA-TTGT-GTGTT-C-T--AGA---T-GCTGGACTC-TC-ACAT---T--GAC--TT-TACAT-C----TGAC-TTC-GT-------------------T-A--G--TGTC-CAT-TTAC-T-----
gi|15 : cgaCCCTATTT--AC-AC-GA-T-AG-TTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-C---------------------ATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTA
gi|16 : TTT--AC-AC-GG-T-AT-GTTTT-G-T-CAGA---T-GT--G----------------------------------------C-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTGTGATTTAG
gi|17 : TATTT--AT-AC-GA-T-AT-GTTTT-G-T-CAGA---T-------------------------AC--TT-CAGTT-A----TGAC-TTC-ATATC-CGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-t
gi|18 : GTCCTATTT--AC-AC-GA-T-AT-GATTT---T-CAGA---T-GT--CATT--TC-ACATC--T--GAC--TT-CATA
gi|19 : ATG--T--GAC--T--CACAT-C----TGAC-TTT-TTGTCCTGATT-T-C-----GT-ATAG--T-TC-CATGTTAC-T-----TGGTATGATattccatttacgtca
gi|2 : CCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATC-TGACT-T-CGTAATGT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTT
gi|20 : GCCCTATTT--AC-AT-GA-T-AA-GTTTT-G-T-CATA---T-CT--GACTCGCC-ACA
gi|21 : aaGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--atc
gi|22 : GCCCTATTT--AC-AC-AA-T-AT-GATTT-G-T-CAGG---T-CT--GACTCGCC-ACAT
gi|23 : aTT--AC-AC-GA-T-ATCGTTTT-GAT-CAGA---T-GT--AACT--TC-A---T--T--GAC--CT-C
gi|24 : cGCCCTATTT--AC-AT-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GATT--TC-AC
gi|3 : aCCCTATTT--AC-AC-GA-T-AT-GTTT--G-T-CAGA---T-GT--GACT--TC-ACATA--T--GAC--TTATACAT-C----TGAC-TTC-ATATC-TGACT-T-CGTAATGT-A--G--T-TC-CAT-TTAC-T-----TGGTATGATTT
gi|4 : GCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAT--TT-CACAT-T----TGAC-TTC-ATATC-TGACT-C-C-----GT-A--G--T-TT-CAT-TT
gi|5 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-TACAT-C----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-A-----TGGTATGATTTAGnnnnnnnnnnnnnnnn
gi|6 : CCTATTT--AC-AC--A-T-AT-GTTTT-G-T-CAGA---TGGT--GA----TC-ACATC--TCGAAA--TT-CACAT-C----TGAC-TTC-AT-TC-TGAC--T-C-----GT-A--AGCT-TC-CAT-TTAC-TTG---TGATATGATTTAG
gi|7 : GCCCTATTT--AC-AC-GAAT-AT-GTTTT-G-T-CAGA---T-GT--GACT--TC-ACATC--T--GAC--TT-CGCATTC----TGAC-TTC-ATATC-TGACT-T-C-----GT-A--G--T-TC-CAT-TTAC-T-----TGGTATGAT
gi|8 : aGCCCTATTT--AC-AC-GA-T-AT-GTTTT-G-T-CAGA---T-GT--GACT--TT-ATATC--T--GAC--TT-CACAT-C----TGAC-TTC-ATATC-TGACT-C-C-----GT-A--G--T-TC-CAT-TTAC-T-----TCGTATGATTTA
gi|9 : GCCCTATTT--ACTACCGA---AT-GTGTT-G-T-CA-A---T-GT--GACT--TCCACATC--T--GAC--TT-TACAT-C----TGAT-TTC-A-ATC-TGA-T-T-C-----GT-A--G--T-TC-CAT-TTACAT-----TGGTA-GATT