lowQualScore : 1111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 4444444444444444444444444444444444 22 22222222 1111 1 11 111111 1111111 2222222222 11111 3333333 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 22222222222 11 22222 1111 4444444444444444
lowQualScore : 7 5 6666666666666666666666666666666666 6 11 77777777 3 4444 22 2 4 7 0 6 3 3 3 44 6 5 55 3 3 666666 3 2 3 555 555 3 44 2222222 777 1111111111 1 3 3 3 00000 777 5555555 3 33 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 99 88888888888 77 6 55555 9999 2222222222222222
lowQualScore : . . .................................. . .. ........ . .... .. . . . . . . . . .. . . .. . . ...... . . . ... ... . .. ....... ... .......... . . . . ..... ... ....... . .. ............................................................................................................................................ .. .. ........... .. . ..... .... ................
lowQualScore : 0 0 0000000000000000000000000000000000 0 00 22222222 7 2222 00 5 0 8 8 7 3 3 3 66 8 0 88 3 3 222222 3 8 3 666 888 3 66 0000000 111 6666666666 2 6 6 6 00000 000 3333333 3 77 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 22 77777777777 22 0 00000 5555 2222222222222222
consensus : TTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCTGCCATCATTT----A---TTCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTGAAAAA--T-TCGT-TT------GA-TTTCTG-CATC--AAA---G-AAAA--CC-----TNATTTT--GACTTC-AT-G---TTGTGTATTGATACGTCG-TATGA-ATTTGAA-AC-----TC---AAATT-C-ATCATGT-TT-TATCATTTAAACTCA-A-TGTT-TT-A-AA-ATATTTAAAT-NATAAGGAATA----AA-T--TATN--T------T-TT-C--------GTTGGATGGAG--GTATACCACGA---------A-----AAAAAA-ACAA-AAAC-GGAAAACTTTGCA--TCATG----C------GCTACGCGCAATGATG-----CAG---TTTT-----CC-GTTCTTCATTTT
Reference ( gi|2 ) : TTCCATTTGGGCACACTAGATCGTCAATATATATTTCCAATGTTTGATCTTAACATCATTT----A---TTCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TCGGATGAAAAA--T-TCGT-TT------GA-TTTCTG-CATC--AAA---G-AAAA--CC-----TGATTTT--GACTCC-AT-T---TTGTGTATTGATACGTCA-TATGA-ATTTGAA-AC-----TC---ACACTGC-ATCATGT-TT-TATTATTCAAATTCATA-TGTT-TT-A-AA-ATAGTCAAAT-CATAAAGAATA----TA-T--CATA--T------T-TT-T--------GTTGGATGGAA--ATCTACCGCGA---------A-----AAAAAATATAA-AAACAGGAAAAC--TGCA--TCATG----C------GCTACGCGAGATAATG-----CAG---CTTT-----CCTGTTATT-ATTTT
gi|10 : TTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCTGCTATCACTT----AACATTCA----CAGTCTT-----AAA------G-CAAT-TTT-GA--TTGGCCGAAAAAAAT-T-GT-TT------GA-TTTTTG-CATC--AAA---G-AAAA--CC-----TGACTTT--CATTTC-AT-G---TTGTGTATTGATACGCCG-AATGA-ATTTGAA-AC-----TC---AAAT--C-AT-ATAT-CA-TATTACTTAAACTCA
gi|8 : CATCATTTTTAAA---TTTT----TATTCTTGAC-GAAATTATG-G-CGAT-TTT-GA--TTGGCTGAAAAA--T-TCGT-TT------GA-TTACTG-TATC--AAA---G-AAAA--CC-----TTATTTT--GACTTC--T-G---TCGTGTATTGATACGTCA-TATGA-ATTTGAA-AC-----TC---A-A-----ATCA----------CACTGAA--TCATA------TT-A-AA-ATA---------ATAAGGAATA----AATT--TATAATT------T-TT-C--------GTTGTATTGAA--GTATAat
gi|7 : attggatatgttCATCATTT----T---TTTAAATTTATTCTT-AC-GAAAT-ATG-G-CGAT-TTT-GA--TTGGCTGAAAAAAAT-TCGT-TTT-----GA-TTACTG-TATTCAAAA---G-AAAA--CCC----TTATTTTTTGACTTC--T-G---TCGTGTA--GATACGTCA-TATGA-ATTTGAA-ACTCAAATC---ACACTGA-ATCATAT-Ttac
gi|4 : aaattggattatgttT----A---TTCA----TTATCTTGAT-TAA--CACG-G-CGAT-TTT-GA--TTGGCTAAACAA--T-TTGT-TG------GA-TTTCTG-CATC--AAA---T-AAAA--CC-----TGATTTT--CAATTC-AT-G---TTGTGCTTTGATACATCA-TATGA-ATTTGAA-GT-----TC---AAATTAT-ATAAT-T-TT-T-TTATTC------------TT-TT-A-AATAAACTCAAAT-GACAAGGGATG-----------ACT--T------T-TT-T--------ATT-----------TTTACCACGA---------A-----AAAA------------AGGACAACTTTGCA--TCATG----C------ACTTTGTGATATGGTG-----CAA---TTTT-----TC-GTTCTT--TTTTaaaataataagaataaatttaataatttttcgttgtattgaagtatatac
gi|6 : ttagT----A---TT-A----TAGGCTTGAT-GAAATTACGTG-TGGT-TTTTGA--TTTCCTGAAATA--T-TCCT-TTAACTTTGA-TTTCTG-CATC--ACA---G-AAAG--CTAGATATTATTTT--GACTTC-ATGTAAATTGTGTATTGATACGTTG-TATGA-ATTTGAA-AC-----TTTTAAAAATCCTATCATGT-TT-TATCAT----ACTCG-A-TATC-TT-A-AA-ATA---AAAT-------------------T--TATT--T------T-TT-C--------GTTGGATGGAT--ATATACCATGG---------A-----GAGAAAAAGGA-AAAcggtgatagtggtggtatatactatatagtgcacctccgtccaacgaaaagatattagattcgtttctt
gi|1 : aattttatgggttcatcatttgttgttgatgtaTCA----T-GTATTGATTGAAAC-ATGAG-CAATGTTT-GA--TTGGCTGAAACA--T-TC-T-TT------GA-TTTCCG-TATC--AAA---G-AAAA--CC-----T---------------AT-T---T---------ACAGGT-G-TATGA-AATTGAA-AC-----TC---AAATTCT-ATCATGT-TT-TATTATTTGAACT-A-A-TGTT-TT-A-AA-ATATTTAAAT-GATAAGGAATGAATTTA-T--TATT--T------T-TT-C--------ATTGGATGGAG--GTATACCATGA---------A-----AA-----ACAA-AAAT--GATAAC--TGTGTTTCATA----T------GTTATTCCCAATGATG-----CAG---TTTTGCAGGCTTGTTTTTCATTTT
gi|3 : attattgcaatattcattatgagtgcAATCTTGAT-GAAATCACG-A-CGAT-TCT-GA--TTGGCTGTGAGA--T-TCGT-TT------GA-TTCCTG-CATC---AA---G-AAAA--CT-----TTATTTT---ACTTC-AT-G---TTTTGTATTGATCCGTTA-TTTGA-ATTTTAA-AT-----TC---AAATCAT-ATCATGT-TT-TATCATTTAGA--CAAATTGTT-TG-A-AA-ATATTCACAT-GATCAAGAATAC---TA-TA-TATA--TAGTAAAT-TTAC--------ATTGGATGGAG--GTATACCACGA---------A------------ATAA-A-----GAAAACTTTGCA--TCATGGATTCATGCAAGTTACGCGCAATGAAG-----CAG---TTCT-----CC-GTTtgggatgggtttttttgtgtgctgtatctccatcctatgaaaaaaaataacgaattcattcct
gi|19 : ttgGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTGAAAAA--ttcaggatataagttggtgatacccatacctccatccaacgaaaa
gi|9 : aatctTTGAT-GAAATTCTG-G-TGAT-TCT-G---TTAGCCGAATT---T-TTTT-TT------AA-TATCTG-CATT--AAA---G-AAAA--CC-----TGATTTT--GACTTC-AT-A---TTGTGTATTGATACATCA-TATGT-ATTTTAA-AT-----TC---AAATTGT-ATCATGT-TT-TATTACCAAAACTCA-A-TGTT-TT-A-AA-ATATTTAAAT-------G---------A-T--C-TA--C------T-TT----------------TGGAG--ATATACCAC-----------------AGAACATACAA-A-----GAAAAC--Taaatcgacttt
gi|5 : ttgaTTTAC-GAAAT-ATG-GACGAT-TTT-GGATTTGGCTGAAAAAAAT-CCGT-TTT-----GA-TTACTGACATA--AAG---G-AAAAACCC-----TTATTTT--GACTTC-AT-G---TCGTGTAATGATACGTCAGTATGAGATTTGAAGAC-----TC---AAAT--C-A-CATG-------------AA--TCATA------TT-A---------CAAGT-AAT-AAGAATA----AA-TTCCATT--TA-----T-TT-C--------GTT--ATGT-A--TTGTACCAAGA---------A-----AAAGAA---AACGAAC-GGAAACCT-TGCA---CTTG----T------GCTACGCACAATGATGACTTCCAGTTCCTTT-----CCtttcat
gi|15 : tattgttatcttttaaattatAAATTACA-G-TGAT-TTT-GG--TAGGCTGTAACA--T-TCGT-GT------TA-TCTATG-CATA--AAA---G-ATAA--CC-----TGATTTT--GA--------T---TTATGT-------TGTCG-TATGA-ATTTGAA-Aaa
gi|16 : TTAAG-G-CAAT-TTT-GA--TTGGCCGAAAAAA-TGTCGT-TT------GA-TT-CTG-CATC--AAA---GGAAAA--CC-----AGATTTT--GACTCCGA------TTGTG-ATTGATTCGtc
gi|13 : TAAAGAA--T---GTCTT------GAATTTCT---AT---AAATACG-AAAA--CT-----CAATTTT--CACTGT-AT-C---CTATATATTGATATGCAG-TATAA-ACTGGAA-AC-----TC---A
gi|14 : agtatcaattagcacatggggtttttaattccc-ATCATGT-TAAGATTATTTGAATTCA-A-TGTT-TTTAAAA-ATATCTAAAT-TATAGGG----------------TT--T------TGTT-T--------GTTGAATGAAGGTATATACCAGGG---------A-----AAAAAAAACAA-CAACaatcatataat
gi|12 : caaatcattATGT-TT-TATCCTTTAAGCTCA----ATT-TT-A-GA-ATATTTAAAT-TATAAGGAATA----AA-T--T-TA--T------T-TT-TTTTTTTC-GTTGGATGGAG--GTGTACCACGACCCC-----ACCCCCAAACAATTC------CCGGAAAACTTTGCA--TCATG----C------GCT
gi|11 : TGTGTT-TATCCTTTAAGCTCA-A-TTTTGTT-A-GA-ATATTTAAATTCATAAGGA-TA----AA-T--TATA--T------T-TT-TTTTTTTGCGTTGGATGGAG--GTGTACCACGACGCACCCCCA-----AACAATTCC------CGGAAAAACTTTGCA--TCATG----C------GCTACGCG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATCTATTTGTACAGAACAAAGAAAATCTAGTAAATCTAATGTATAAACTTGCACTACACATAATAACGAATACACTATATTTACAAT
Unaligned ( gi|18 ): AAATGACAAGGAATTAATTAATTATTTTTTCGGTGGATGGAGGTATACCATGAACCCCCCCCC
Alignments
lowQualScore : 2 555555 22222222 1111 111111 2222222 111111111111 333333333333333333333333333333333333 11111111 11111111111111 3333333333333333333333333333333333333333 22222222 22222222 11 222222 1
lowQualScore : 4 3 2 2 0 3 4 2 2 777777 2 11111111 1 2222 0 1 66 6 0 5 2 2 2 33 66 77 6 44 111111 3 3 444 888 77 77777 4 44 1 1 6666 0 3 3 3 7777 6666666 44 4444 0 2 66 444444444444 3 55 77 2 000000000000000000000000000000000000 55555555 88888888888888 5555 2 2 8888888888888888888888888888888888888888 4 4 00000000 66 4 4 22222222 55 3 222222 5 3
lowQualScore : . . . . . . . . . ...... . ........ . .... . . .. . . . . . . .. .. .. . .. ...... . . ... ... .. ..... . .. . . .... . . . . .... ....... .. .... . . .. ............ . .. .. . .................................... ........ .............. .... . . ........................................ . . ........ .. . . ........ .. . ...... . .
lowQualScore : 0 0 5 5 0 0 0 5 5 555555 5 22222222 7 1111 4 4 11 5 4 7 9 9 9 99 88 99 2 66 999999 1 1 444 555 33 77777 0 22 5 5 5555 5 3 3 3 1111 1111111 66 4444 3 7 66 222222222222 3 77 11 1 555555555555555555555555555555555555 00000000 11111111111111 3333 9 9 3333333333333333333333333333333333333333 7 4 66666666 11 4 4 44444444 77 6 111111 3 2
consensus : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTTTGATCCTGNCATCATTT----A---TTCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A-A-T----T----A-----T--TT------TTT--------CGTTGGATGGAGG--------------TA----TACCA-C-GA-----AANA----A-----AA---A---C--AA-AAAC--GGAAAACTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
Reference ( family-380 ) : TTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCTGCCATCATTT----A---TTCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TNA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-TAAATN-ATAAGGAAT--A--A-A-T----T----A-----T--NT------TTT--------CGTTGGATGGAGG--------------TA----TACCA-C-GA-----AAAA----A-----AA---A---C--AA-AAAC--GGAAAACTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
gi|1 : TCA----T-GTATTGATTGAAAC-ATGAG-CAATGTTT-GA--TTGGCTG--AAACA--T-TC--TTT------GA-TTTCCG-TATC--AAA---GAAAA--CC-----T-A--TTT------------------------ACAGGT--GTATGA-AATTGAA-ACTC----AAAT--T-CTATCATGT-TT-TATTATTTGAACT-A-ATGTT-TT--AAA-ATATT-TAAATG-ATAAGGAAT--G--A-A-T----TTATTA-----T--TT------TTT--------CATTGGATGGAGG--------------TA----TACCA-T-G---------A----A-----AA---A---C--AA-AAAT---GATAACTGTGTTTCA-TA--------T--GT-T-ATTCCCA-------ATGATGC--AGTTTTGCAGGCTTGTTTTTCATTTT
gi|1 : attattgcaatattcattatgagtgcAGGAAT--G--A-A-T----TCGTTA-----T--TT------TTTTT------CATAGGATGGAGA--------------TA----CAGCA-C-AC-----AAAA----A-----AACCCATCCC--AA-AAAT--GAAAAACtgggatgggtttttttgtgtgctgtatctccatcctatgaaaaaaaataacgaattcattcct
gi|10 : attattgcaatattcattatgagtgctcatgtattgattgaaacatgagcaatgtttgattggctgaaacattctttgatttccgtatcaaagaaaacctatttacaggtgtatgaaattgaaactcaaattctatcatgttttattatttgaactaatgttttaaaatatttaaatgataaggaatgaatttattattttttcattggatggaggtataccatgaaaaacaaaaatgataactgtgtttcatatgttattcccaatgatgcagttttgcaggcttTTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCTGCTATCACTT----AACATTCA----CAGTCTT-----AAA------G-CAAT-TTT-GA--TTGGCCG--AAAAAAAT-T-G-TTT------GA-TTTTTG-CATC--AAA---GAAAA--CC-----TGA--CTTTCATTTCATGT----TGTGTATTGATACGCC-GAATGA-ATTTGAA-ACTC----AAA---T-C-AT-ATAT-CA-TATTACTTAAACTCA-AT
gi|11 : TGTGTT-TATCCTTTAAGCTCA-ATTTTGTT--AGA-ATATT-TAAATTCATAAGGA-T--A--A-A-T----T----A-----T--AT------TTTTTTTTTTGCGTTGGATGGAGG--------------TG----TACCA-C-GA-----CGCACCCCC-----AA---A---C--AA-TTCCCGGAAAAACTTTGCATCA-TG--------C--GC-T-ACGCG
gi|12 : ATGT-TT-TATCCTTTAAGCTCA-AT--T-TT--AGA-ATATT-TAAATT-ATAAGGAAT--A--A-ATT----T----ATTTTTT--TT------TTT--------CGTTGGATGGAGG--------------TG----TACCA-C-GA-----CCCC----ACCCCCAA---A---C--AATTCCC--GGAAAACTTTGCATCA-TG--------C--GC-T-
gi|13 : ATG-G-GGTT-TTT-AA--TTCCCTA--AAGAA--TGTC---TT------GAATTTCT---AT---AAATACGAAAA--CT-----CAA--TTTTCACTGTATCC----TATATATTGATATGCA-GTATAA-ACTGGAA-ACTC----AAA---T-C-AT
gi|14 : agtatcaattagcacC----AAATCAT-T-ATCATGT-TAAGATTATTTGAATTCA-ATGTT-TTTAAAA-ATATC-TAAATT-ATAGGG------------T----T----T-----T--GT------TT----------GTTGAATGAAGGTA------------TA----TACCAGG-GA-----AAAA----A-----AA---A---C--AA-CAAC--ataat
gi|15 : AAATTACA-G-TGAT-TTT-GG--TAGGCTG--TAACA--T-TCG-TGT------TA-TCTATG-CATA--AAA---GATAA--CC-----TGA--TTTTGATTT-ATGT----TGT------------C-GTATGA-ATTTGAA-A
gi|16 : TTAAG-G-CAAT-TTT-GA--TTGGCCGA-AAAAA--TGTCG-TTT------GA--TTCTG-CATC--AAAG--GAAAA--CC-----AGA--TTTTGACTCCG-AT----TGTG-ATTGATTCGtc
gi|18 : AAATG-ACAAGGAATTAATTA-A-T----T----A-----T--TT------TTT--------CGGTGGATGGAGG--------------TA----TACCA-T-GA-----A
gi|19 : GTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--ccccccccc
gi|2 : aatctTTCCATTTGGGCACACTAGATCGTCAATATATATTTCCAATGTTTGATCTTAACATCATTT----A---TTCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TCGGATG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTCCATTT----TGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----ACAC--TGC-ATCATGT-TT-TATTATTCAAATTCATATGTT-TT--AAA-ATAGT-CAAATC-ATAAAGAAT--A--T-A-T----C----A-----T--AT------TTT--------TGTTGGATGGAAA--------------TC----TACCG-C-GA-----AAAA----A-----AAT--A---T--AA-AAACA-GGAAAAC--TGCATCA-TG--------C--GC-T-ACGCGAG-------ATAATGC--AGCTTTCCT-----GTTATT-ATTTTaaatcgacttt
gi|3 : AATCTTGAT-GAAATCACG-A-CGAT-TCT-GA--TTGGCTG--TGAGA--T-TCG-TTT------GA-TTCCTG-CATC--AA----GAAAA--CT-----TTA--TTTT-ACTTCATGT----TTTGTATTGATCCGTT-ATTTGA-ATTTTAA-ATTC----AAAT--CAT-ATCATGT-TT-TATCATTTAGACAAA-TTGTT-TG--AAA-ATATT-CACATG-ATCAAGAAT--A--CTA-TA---T----A-----T--ATAGTAAATTTA-------CATTGGATGGAGG--------------TA----TACCA-C-GA-----AATA----A-----A---------------------GAAAACTTTGCATCA-TGGATTCATGCAAGT-T-ACGCGCA-------ATGAAGC--AGTTCTCC------GTT-TTC
gi|3 : ttgT------TTT--------CGTTGGATGGAGG--------------TATGGGTATCA-C-CA-----ACTT----A-----TA---T---CCTGA-AAAC--GGAGAAC--TGCTTCATTG--------C--GCGTAACTTGCATGAATCCATGATGCAAAGTT-----------TTCTTTATTTggatataagttggtgatacccatacctccatccaacgaaaa
gi|4 : ttgaatcttgatgaaatcacgacgattctgattggctgtgagattcgtttgattcctgcatcaagaaaactttattttacttcatgttttgtattgatccgttatttgaattttaaattcaaatcatatcatgttttatcatttagacaaattgtttgaaaatattcacatgatcaagaatactatatatatagtaaatttacattggatggaggtataccacgT----A---TTCA----TTATCTTGAT-TAA--CACG-G-CGAT-TTT-GA--TTGGCTA--AACAA--T-TTG-TTG------GA-TTTCTG-CATC--AAA---TAAAA--CC-----TGA--TTTTCAATTCATGT----TGTGCTTTGATACATC-ATATGA-ATTTGAA-GTTC----AAAT--TAT-ATAAT-T-TT-T-TTATTC-----------TT-TT--AAATAAACT-CAAATG-ACAAGGGAT--G--A-C-T-------------------T------TTT--------TATT-----------------------TT----TACCA-C-GA-----AAAA----A-----A--------------------GGACAACTTTGCATCA-TG--------C--AC-T-TTGTGAT-------ATGGTGC--AATTTTTC------GTTCTT--TTTT
gi|4 : ttagAAGAAAC--G--A-A-TCTAAT----A-----T--CT------TTT--------CGTTGGACGGAGGTGCACTATATAGTATA----TACCA-C-CACTATCACCG----A-----AA---A------AA-GAAC--GAAAAA--TTGCACCA-TAT-------C--AC-A-AAGTGC--------ATGATGCAAAGTTGTCC------TTTTTTcggtgatagtggtggtatatactatatagtgcacctccgtccaacgaaaagatattagattcgtttctt
gi|5 : ttagtattcattatcttgattaacacggcgattttgattggctaaacaatttgttggatttctgcatcaaataaaacctgattttcaattcatgttgtgctttgatacatcatatgaatttgaagttcaaattatataatttttttattcttttaaataaactcaaatgacaagggatgacttttttatttttaccacgaTTTAC-GAAAT-ATG-GACGAT-TTT-GGATTTGGCTG--AAAAAAAT-CCG-TTTT-----GA-TTACTGACATA--AAG---GAAAAACCC-----TTA--TTTTGACTTCATGT----CGTGTAATGATACGTCAGTATGAGATTTGAAGACTC----AAA---T-C-A-CATG-------------AA--TC----------------ATATTACAAGTA-ATAA-GAAT--A--A-A-T----TCC--A-----T--TTA-----TTT--------CGTT--ATGTA-T--------------TG----TACCA-A-GA-----AAAAG---A-----AA---A---C-----GAAC--GG-AAACCTTGCA-CT-TG--------T--GC-T-ACGCACA-------ATGATG----ACTTCCA------GTTCCT
gi|6 : tattgttatcttttaaattatT----A---TT-A----TAGGCTTGAT-GAAATTACGTG-TGGT-TTTTGA--TTTCCTG--AAATA--T-TCC-TTTAACTTTGA-TTTCTG-CATC--ACA---GAAAG--CTAGATATTA--TTTTGACTTCATGTAAATTGTGTATTGATACGTT-GTATGA-ATTTGAA-ACTTTTAAAAAT--C-CTATCATGT-TT-TATCAT----ACTCG-ATATC-TT--AAA-ATA----AAAT--------------------T----T----A-----T--TT------TTT--------CGTTGGATGGATA--------------TA----TACCA-TGGA-----GAGA----A-----AA---A---G--GA-AAAttccaa
gi|7 : aattttatgggttcatcatttgttgttgatgtaCATCATTT----T---TTTAAATTTATTCTT-AC-GAAAT-ATG-G-CGAT-TTT-GA--TTGGCTGAAAAAAA--T-TCGTTTT------GA-TTACTG-TATTCAAAA---GAAAAC-CC-----TTATTTTTTGACTTC-TGT----CGTGTA--GATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAA-GAAT--A--A-A-T----TTA--A-----TAATT------TTT--------CGTTGTATTGAAG--------------TA----TA
gi|8 : aaattggattatgttCATCATTTTTAAA---TTTT----TATTCTTGAC-GAAATTATG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTACTG-TATC--AAA---GAAAA--CC-----TTA--TTTTGACTTC-TGT----CGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAAGGAAT--A--A-ATT----T----A-----TAATT------TTT--------CGTTGTATTGAAG--------------TA----TAtac
gi|9 : attggatatgttTTGAT-GAAATTCTG-G-TGAT-TCT-G---TTAGCCG--AATT---T-TTT-TTT------AA-TATCTG-CATT--AAA---GAAAA--CC-----TGA--TTTTGACTTCATAT----TGTGTATTGATACATC-ATATGT-ATTTTAA-ATTC----AAAT--TGT-ATCATGT-TT-TATTACCAAAACTCA-ATGTT-TT--AAA-ATATT-TAAATG-AT----------------C----T----A-----C--TT------T-----------------TGGAGA--------------TA----TACCA-C--------AGAA----C-----AT---A---C--AA-A------GAAAACTTTTCATtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATCTATTTGTACAGAACAAAGAAAATCTAGTAAATCTAATGTATAAACTTGCACTACACATAATAACGAATACACTATATTTACAAT
Alignments
lowQualScore : 1 2222 1111111111111111 111111 2222222 111111111111 3333333333333333333333333333 11111111111111 3333333333333333333333333333333333333333 22222222 22222222 11 222222 1
lowQualScore : 1 1 1 1 5 1 1 1 1 0000 3 99 7777777777777777 2 3 66 6 0 5 2 2 2 33 66 77 6 44 111111 3 3 444 888 77 77777 4 44 1 1 6666 0 3 3 3 7777 6666666 44 4444 0 2 66 444444444444 3 66 88 2 9999999999999999999999999999 444 2 88888 55 88888888888888 5555 2 2 9999999999999999999999999999999999999999 4 4 00000000 66 4 4 22222222 55 3 222222 5 3
lowQualScore : . . . . . . . . . .... . .. ................ . . .. . . . . . . .. .. .. . .. ...... . . ... ... .. ..... . .. . . .... . . . . .... ....... .. .... . . .. ............ . .. .. . ............................ ... . ..... .. .............. .... . . ........................................ . . ........ .. . . ........ .. . ...... . .
lowQualScore : 0 0 0 0 0 0 0 0 0 0000 7 00 1111111111111111 2 6 11 5 4 7 9 9 9 99 88 99 2 66 999999 1 1 444 555 33 77777 7 22 5 5 5555 5 3 3 3 1111 1111111 66 4444 3 7 66 222222222222 3 22 33 1 7777777777777777777777777777 444 5 88888 99 11111111111111 3333 9 9 5555555555555555555555555555555555555555 7 4 66666666 11 4 4 44444444 77 6 111111 3 2
consensus : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNTGT-CATCATTT----A---TTCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A-A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--------------TA----TACCA-C-GA-----AANA----A-----AA---A---C--AA-AAAC--GGAAAACTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
Reference ( family-380 ) : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTTTGATCCTGN-CATCATTT----A---TTCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A-A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--------------TA----TACCA-C-GA-----AANA----A-----AA---A---C--AA-AAAC--GGAAAACTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
gi|1 : TCA----T-GTATTGATTGAAAC-ATGAG-CAATGTTT-GA--TTGGCTG--AAACA--T-TC--TTT------GA-TTTCCG-TATC--AAA---GAAAA--CC-----T-A--TTT------------------------ACAGGT--GTATGA-AATTGAA-ACTC----AAAT--T-CTATCATGT-TT-TATTATTTGAACT-A-ATGTT-TT--AAA-ATATT-TAAATG-ATAAGGAAT--G--A-A-T----TTATTAT-------T---T-T-----TT--CATTGGATGGAGG--------------TA----TACCA-T-G---------A----A-----AA---A---C--AA-AAAT---GATAACTGTGTTTCA-TA--------T--GT-T-ATTCCCA-------ATGATGC--AGTTTTGCAGGCTTGTTTTTCATTTT
gi|1 : attattgcaatattcattatgagtgcAGGAAT--G--A-A-T----TCGTTAT-------T---T-T-----TTTTCATAGGATGGAGA--------------TA----CAGCA-C-AC-----AAAA----A-----AACCCATCCC--AA-AAAT--GAAAAACtgggatgggtttttttgtgtgctgtatctccatcctatgaaaaaaaataacgaattcattcct
gi|10 : attattgcaatattcattatgagtgctcatgtattgattgaaacatgagcaatgtttgattggctgaaacattctttgatttccgtatcaaagaaaacctatttacaggtgtatgaaattgaaactcaaattctatcatgttttattatttgaactaatgttttaaaatatttaaatgataaggaatgaatttattattttttcattggatggaggtataccatgaaaaacaaaaatgataactgtgtttcatatgttattcccaatgatgcagttttgcaggcttTTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCTGC-TATCACTT----AACATTCA----CAGTCTT-----AAA------G-CAAT-TTT-GA--TTGGCCG--AAAAAAAT-T-G-TTT------GA-TTTTTG-CATC--AAA---GAAAA--CC-----TGA--CTTTCATTTCATGT----TGTGTATTGATACGCC-GAATGA-ATTTGAA-ACTC----AAA---T-C-AT-ATAT-CA-TATTACTTAAACTCA-AT
gi|11 : TGTGTT-TATCCTTTAAGCTCA-ATTTTGTT--AGA-ATATT-TAAATTCATAAGGA-T--A--A-A-T----T----ATATTTTTTT---T-T-----TTG-CGTTGGATGGAGG--------------TG----TACCA-C-GA-----CGCACCCCC-----AA---A---C--AA-TTCCCGGAAAAACTTTGCATCA-TG--------C--GC-T-ACGCG
gi|12 : ATGT-TT-TATCCTTTAAGCTCA-AT--T-TT--AGA-ATATT-TAAATT-ATAAGGAAT--A--A-A-T----TT---AT-------T---T-TTTTTTTT--CGTTGGATGGAGG--------------TG----TACCA-C-GA-----CCCC----ACCCCCAA---A---C--AATTCCC--GGAAAACTTTGCATCA-TG--------C--GC-T-
gi|13 : ATG-G-GGTT-TTT-AA--TTCCCTA--AAGAA--TGTC---TT------GAATTTCT---AT---AAATACGAAAA--CT-----CAA--TTTTCACTGTATCC----TATATATTGATATGCA-GTATAA-ACTGGAA-ACTC----AAA---T-C-AT
gi|14 : agtatcaattagcacC----AAATCAT-T-ATCATGT-TAAGATTATTTGAATTCA-ATGTT-TTTAAAA-ATATC-TAAATT-ATAGGG-----------------------T-------T---T-TG----TT--TGTTGAATGAAGGTA------------TA----TACCAGG-GA-----AAAA----A-----AA---A---C--AA-CAAC--ataat
gi|15 : AAATTACA-G-TGAT-TTT-GG--TAGGCTG--TAACA--T-TCG-TGT------TA-TCTATG-CATA--AAA---GATAA--CC-----TGA--TTTTGATTT-ATGT----TGT------------C-GTATGA-ATTTGAA-A
gi|16 : TTAAG-G-CAAT-TTT-GA--TTGGCCGA-AAAAA--TGTCG-TTT------GA--TTCTG-CATC--AAAG--GAAAA--CC-----AGA--TTTTGACTCCG-AT----TGTG-ATTGATTCGtc
gi|18 : AAATG-ACAAGGAATTAATTA-A-T----T----AT-------T---T-T-----TT--CGGTGGATGGAGG--------------TA----TACCA-T-GA-----A
gi|19 : GTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--ccccccccc
gi|2 : aatctTTCCATTTGGGCACACTAGATCGTCAATATATATTTCCAATGTTTGATCTTAA-CATCATTT----A---TTCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TCGGATG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTCCATTT----TGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----ACAC--TGC-ATCATGT-TT-TATTATTCAAATTCATATGTT-TT--AAA-ATAGT-CAAATC-ATAAAGAAT--A--T-A-T----C----AT-------A---T-T-----TT--TGTTGGATGGAAA--------------TC----TACCG-C-GA-----AAAA----A-----AAT--A---T--AA-AAACA-GGAAAAC--TGCATCA-TG--------C--GC-T-ACGCGAG-------ATAATGC--AGCTTTCCT-----GTTATT-ATTTTaaatcgacttt
gi|3 : AATCTTGAT-GAAATCACG-A-CGAT-TCT-GA--TTGGCTG--TGAGA--T-TCG-TTT------GA-TTCCTG-CATC--AA----GAAAA--CT-----TTA--TTTT-ACTTCATGT----TTTGTATTGATCCGTT-ATTTGA-ATTTTAA-ATTC----AAAT--CAT-ATCATGT-TT-TATCATTTAGACAAA-TTGTT-TG--AAA-ATATT-CACATG-ATCAAGAAT--ACTATA-TA---T----ATAG-----TAAAT-T-----TA--CATTGGATGGAGG--------------TA----TACCA-C-GA-----AATA----A-----A---------------------GAAAACTTTGCATCA-TGGATTCATGCAAGT-T-ACGCGCA-------ATGAAGC--AGTTCTCC------GTT-TTC
gi|3 : ttg---T-T-----TT--CGTTGGATGGAGG--------------TATGGGTATCA-C-CA-----ACTT----A-----TA---T---CCTGA-AAAC--GGAGAAC--TGCTTCATTG--------C--GCGTAACTTGCATGAATCCATGATGCAAAGTT-----------TTCTTTATTTggatataagttggtgatacccatacctccatccaacgaaaa
gi|4 : ttgaatcttgatgaaatcacgacgattctgattggctgtgagattcgtttgattcctgcatcaagaaaactttattttacttcatgttttgtattgatccgttatttgaattttaaattcaaatcatatcatgttttatcatttagacaaattgtttgaaaatattcacatgatcaagaatactatatatatagtaaatttacattggatggaggtataccacgT----A---TTCA----TTATCTTGAT-TAA--CACG-G-CGAT-TTT-GA--TTGGCTA--AACAA--T-TTG-TTG------GA-TTTCTG-CATC--AAA---TAAAA--CC-----TGA--TTTTCAATTCATGT----TGTGCTTTGATACATC-ATATGA-ATTTGAA-GTTC----AAAT--TAT-ATAAT-T-TT-T-TTATTC-----------TT-TT--AAATAAACT-CAAATG-ACAAGGGAT--G--A--------------C-------T---T-T-----TT--TATT-----------------------TT----TACCA-C-GA-----AAAA----A-----A--------------------GGACAACTTTGCATCA-TG--------C--AC-T-TTGTGAT-------ATGGTGC--AATTTTTC------GTTCTT--TTTT
gi|4 : ttagAAGAAAC--G--A-A-TCTAAT----AT-------C---T-T-----TT--CGTTGGACGGAGGTGCACTATATAGTATA----TACCA-C-CACTATCACCG----A-----AA---A------AA-GAAC--GAAAAA--TTGCACCA-TAT-------C--AC-A-AAGTGC--------ATGATGCAAAGTTGTCC------TTTTTTcggtgatagtggtggtatatactatatagtgcacctccgtccaacgaaaagatattagattcgtttctt
gi|5 : ttagtattcattatcttgattaacacggcgattttgattggctaaacaatttgttggatttctgcatcaaataaaacctgattttcaattcatgttgtgctttgatacatcatatgaatttgaagttcaaattatataatttttttattcttttaaataaactcaaatgacaagggatgacttttttatttttaccacgaTGT-TATCTTTT----A-----AA----TTATTTT-AC-GAAAT-ATG-GACGAT-TTT-GGATTTGGCTG--AAAAAAAT-CCG-TTTT-----GA-TTACTGACATA--AAG---GAAAAACCC-----TTA--TTTTGACTTCATGT----CGTGTAATGATACGTCAGTATGAGATTTGAAGACTC----AAA---T-C-A-CATG-------------AA--TC----------------ATATTACAAGTA-ATAA-GAAT--A--A-A-T----TCC--AT-------T---TAT-----TT--CGTT--ATGTA-T--------------TG----TACCA-A-GA-----AAAAG---A-----AA---A---C-----GAAC--GG-AAACCTTGCA-CT-TG--------T--GC-T-ACGCACA-------ATGATG----ACTTCCA------GTTCCT
gi|6 : tatT----A---TT-A----TAGGCTTGAT-GAAATTACGTG-TGGT-TTTTGA--TTTCCTG--AAATA--T-TCC-TTTAACTTTGA-TTTCTG-CATC--ACA---GAAAG--CTAGATATTA--TTTTGACTTCATGTAAATTGTGTATTGATACGTT-GTATGA-ATTTGAA-ACTTTTAAAAAT--C-CTATCATGT-TT-TATCAT----ACTCG-ATATC-TT--AAA-ATA----AAAT--------------------T----T----AT-------T---T-T-----TT--CGTTGGATGGATA--------------TA----TACCA-TGGA-----GAGA----A-----AA---A---G--GA-AAAttccaa
gi|7 : aattttatgggttcatcatttgttgttgatgtaTTGGATTATGTTCATCATTT----T---TTTAAATTTATTCTT-AC-GAAAT-ATG-G-CGAT-TTT-GA--TTGGCTGAAAAAAA--T-TCGTTTT------GA-TTACTG-TATTCAAAA---GAAAAC-CC-----TTATTTTTTGACTTC-TGT----CGTGTA--GATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAA-GAAT--A--A-A-T----TTA--ATAA-----T---T-T-----TT--CGTTGTATTGAAG--------------TA----TA
gi|8 : aaa-CATCATTTTTAAA---TTTT----TATTCTTGAC-GAAATTATG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTACTG-TATC--AAA---GAAAA--CC-----TTA--TTTTGACTTC-TGT----CGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAAGGAAT--A--A-ATT----T----ATAA-----T---T-T-----TT--CGTTGTATTGAAG--------------TA----TAtac
gi|9 : attggatatgttTTGAT-GAAATTCTG-G-TGAT-TCT-G---TTAGCCG--AATT---T-TTT-TTT------AA-TATCTG-CATT--AAA---GAAAA--CC-----TGA--TTTTGACTTCATAT----TGTGTATTGATACATC-ATATGT-ATTTTAA-ATTC----AAAT--TGT-ATCATGT-TT-TATTACCAAAACTCA-ATGTT-TT--AAA-ATATT-TAAATG-AT----------------C----T----AC-------T---T-T----------------TGGAGA--------------TA----TACCA-C-AG-----AAC-----------AT---A---C--AA-A------GAAAACTTTTCATtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATCTATTTGTACAGAACAAAGAAAATCTAGTAAATCTAATGTATAAACTTGCACTACACATAATAACGAATACACTATATTTACAAT
Alignments
lowQualScore : 1 11111 11 1111111111 1111 111111 2222222 111111111111 3333333333333333333333333333333 1111111111111111111 33333333333333333333333333333333333333333 22222222 22222222 11 222222 1
lowQualScore : 1 1 1 1 5 1 1 1 1 77777 1 11 5 5 66 9999999999 0000 2 3 66 6 0 5 2 2 2 33 66 77 6 44 111111 3 3 444 888 77 77777 4 44 1 1 6666 0 3 3 3 7777 6666666 44 4444 0 2 66 444444444444 3 66 88 2 9999999999999999999999999999999 444 2 88888 55 33 6666666666666666666 2 2 77777777777777777777777777777777777777777 3 4 4 00000000 66 4 4 22222222 55 3 222222 5 3
lowQualScore : . . . . . . . . . ..... . .. . . .. .......... .... . . .. . . . . . . .. .. .. . .. ...... . . ... ... .. ..... . .. . . .... . . . . .... ....... .. .... . . .. ............ . .. .. . ............................... ... . ..... .. .. ................... . . ......................................... . . . ........ .. . . ........ .. . ...... . .
lowQualScore : 0 0 0 0 0 0 0 0 0 22222 0 00 7 7 99 5555555555 6666 2 6 11 5 4 7 9 9 9 99 88 99 2 66 999999 1 1 444 555 33 77777 7 22 5 5 5555 5 3 3 3 1111 1111111 66 4444 3 7 66 222222222222 3 22 33 1 7777777777777777777777777777777 444 5 88888 99 44 9999999999999999999 9 9 77777777777777777777777777777777777777777 6 7 4 66666666 11 4 4 44444444 77 6 111111 3 2
consensus : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--T--------------A----TACCA-C-GA-----AANA-A-----AA---A---C--AA-A-AA----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
Reference ( family-380 ) : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--T--------------A----TACCA-C-GA-----AANA-A-----AA---A---C--AA-A-AA----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
gi|1 : T-CATT-ATGAGT----G---C-TCA----T-GTATTGATTGAAAC-ATGAG-CAATGTTT-GA--TTGGCTG--AAACA--T-TC--TTT------GA-TTTCCG-TATC--AAA---GAAAA--CC-----T-A--TTT------------------------ACAGGT--GTATGA-AATTGAA-ACTC----AAAT--T-CTATCATGT-TT-TATTATTTGAACT-A-ATGTT-TT--AAA-ATATT-TAAATG-ATAAGGAAT--G--AATTTA-T----T----AT-------T---T-T-----TT--CATTGGATGGAGG--T--------------A----TACCA-T-G---------A-A-----AA---A---C--AA-A-AA----T--GATAA-CTGTGTTTCA-TA--------T--GT-T-ATTCCCA-------ATGATGC--AGTTTTGCAGGCTTGTTTTTCATTTT
gi|1 : attattgcaatatAGGAAT--G--A----A-T----TCGTTAT-------T---T-T-----TTTTCATAGGATGGAGA--T--------------A----CAGCA-C-AC-----AAAA-A-----AACCCATCCC--AA-A-AA----T-GAAAAA-Ctgggatgggtttttttgtgtgctgtatctccatcctatgaaaaaaaataacgaattcattcct
gi|10 : attattgcaatattcattatgagtgctcatgtattgattgaaacatgagcaatgtttgattggctgaaacattctttgatttccgtatcaaagaaaacctatttacaggtgtatgaaattgaaactcaaattctatcatgttttattatttgaactaatgttttaaaatatttaaatgataaggaatgaatttattattttttcattggatggaggtataccatgaaaaacaaaaatgataactgtgtttcatatgttattcccaatgatgcagttttgcaggcttTTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCT--GC-TATC-ACT--T----AACAT-TCA----CAGTCTT-----AAA------G-CAAT-TTT-GA--TTGGCCG--AAAAAAAT-T-G-TTT------GA-TTTTTG-CATC--AAA---GAAAA--CC-----TGA--CTTTCATTTCATGT----TGTGTATTGATACGCC-GAATGA-ATTTGAA-ACTC----AAA---T-C-AT-ATAT-CA-TATTACTTAAACTCA-AT
gi|11 : TGTGTT-TATCCTTTAAGCTCA-ATTTTGTT--AGA-ATATT-TAAATTCATAAGGA-T--A--A----A-T----T----ATATTTTTTT---T-T-----TTG-CGTTGGATGGAGG--T--------------G----TACCA-C-GA-----CGCA-C-----CC---C---C--AA-ACAATTCCC-GGAAAAACTTTGCATCA-TG--------C--GC-T-ACGCG
gi|12 : ATGT-TT-TATCCTTTAAGCTCA-AT--T-TT--AGA-ATATT-TAAATT-ATAAGGAAT--A--A----A-T----TT---AT-------T---T-TTTTTTTT--CGTTGGATGGAGG--T--------------G----TACCA-C-GA-----CCCC-ACCCCCAA---A---C--AATT-CC----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-
gi|13 : ATG-G-GGTT-TTT-AA--TTCCCTA--AAGAA--TGTC---TT------GAATTTCT---AT---AAATACGAAAA--CT-----CAA--TTTTCACTGTATCC----TATATATTGATATGCA-GTATAA-ACTGGAA-ACTC----AAA---T-C-AT
gi|14 : agtatcaattagcacC----AAATCAT-T-ATCATGT-TAAGATTATTTGAATTCA-ATGTT-TTTAAAA-ATATC-TAAATT-ATAGGG--------------------------T-------T---T-TG----TT--TGTTGAATGAAGGTAT--------------A----TACCAGG-GA-----AAAA-A-----AA---A---C--AA-C-AA----C-ataat
gi|15 : AAATTACA-G-TGAT-TTT-GG--TAGGCTG--TAACA--T-TCG-TGT------TA-TCTATG-CATA--AAA---GATAA--CC-----TGA--TTTTGATTT-ATGT----TGT------------C-GTATGA-ATTTGAA-A
gi|16 : TTAAG-G-CAAT-TTT-GA--TTGGCCGA-AAAAA--TGTCG-TTT------GA--TTCTG-CATC--AAAG--GAAAA--CC-----AGA--TTTTGACTCCG-AT----TGTG-ATTGATTCGtc
gi|18 : AAATG-ACAAGGAATTAATTA----A-T----T----AT-------T---T-T-----TT--CGGTGGATGGAGG--T--------------A----TACCA-T-GA-----A
gi|19 : GTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--ccccccccc
gi|2 : aatctTTCCATTTGGGCACACTAGATCGTCAATATATATTTCCAATGTTTGATCTT--AA-CATC-ATT--T----A---T-TCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TCGGATG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTCCATTT----TGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----ACAC--TGC-ATCATGT-TT-TATTATTCAAATTCATATGTT-TT--AAA-ATAGT-CAAATC-ATAAAGAAT--A--T----A-T----C----AT-------A---T-T-----TT--TGTTGGATGGAAA--T--------------C----TACCG-C-GA-----AAAA-A-----AAT--A---T--AA-A-AA----CAGGAAAA-C--TGCATCA-TG--------C--GC-T-ACGCGAG-------ATAATGC--AGCTTTCCT-----GTTATT-ATTTTaaatcgacttt
gi|3 : AATCTTGAT-GAAATCACG-A-CGAT-TCT-GA--TTGGCTG--TGAGA--T-TCG-TTT------GA-TTCCTG-CATC--AA----GAAAA--CT-----TTA--TTTT-ACTTCATGT----TTTGTATTGATCCGTT-ATTTGA-ATTTTAA-ATTC----AAAT--CAT-ATCATGT-TT-TATCATTTAGACAAA-TTGTT-TG--AAA-ATATT-CACATG-ATCAAGAAT--ACTAT---A-TA---T----ATAG-----TAAAT-T-----TA--CATTGGATGGAGG--T--------------A----TACCA-C-GA-----AATA-A-----A-------------------------GAAAA-CTTTGCATCA-TGGATTCATGCAAGT-T-ACGCGCA-------ATGAAGC--AGTTCTCC------GTT-TTC
gi|3 : ttg---T-T-----TT--CGTTGGATGGAGG--T--------------ATGGGTATCA-C-CA-----ACTT-A-----TA---T---CCTGA-A-AA----C-GGAGAA-C--TGCTTCATTG--------C--GCGTAACTTGCATGAATCCATGATGCAAAGTT-----------TTCTTTATTTggatataagttggtgatacccatacctccatccaacgaaaa
gi|4 : ttgaatcttgatgaaatcacgacgattctgattggctgtgagattcgtttgattcctgcatcaagaaaactttattttacttcatgttttgtattgatccgttatttgaattttaaattcaaatcatatcatgttttatcatttagacaaattgtttgaaaatattcacatgatcaagaatactatatatatagtaaatttacattggatggaggtataccacg--T----A---T-TCA----TTATCTTGAT-TAA--CACG-G-CGAT-TTT-GA--TTGGCTA--AACAA--T-TTG-TTG------GA-TTTCTG-CATC--AAA---TAAAA--CC-----TGA--TTTTCAATTCATGT----TGTGCTTTGATACATC-ATATGA-ATTTGAA-GTTC----AAAT--TAT-ATAAT-T-TT-T-TTATTC-----------TT-TT--AAATAAACT-CAAATG-ACAAGGGAT--G--A-----------------C-------T---T-T-----TT--TATT-----------T--------------T----TACCA-C-GA-----AAAA-A-----A------------------------GGACAA-CTTTGCATCA-TG--------C--AC-T-TTGTGAT-------ATGGTGC--AATTTTTC------GTTCTT--TTTT
gi|4 : ttagAAGAAAC--G--A----A-TCTAAT----AT-------C---T-T-----TT--CGTTGGACGGAGG--TGCACTATATAGTATA----TACCA-C-CACTATCACCG-A-----AA---A------AA-G-AA----C-GAAAAA---TTGCACCA-TAT-------C--AC-A-AAGTGC--------ATGATGCAAAGTTGTCC------TTTTTTcggtgatagtggtggtatatactatatagtgcacctccgtccaacgaaaagatattagattcgtttctt
gi|5 : ttagtattcattatcttgattaacacggcgattttgattggctaaacaatttgttggatttctgcatcaaataaaacctgattttcaattcatgttgtgctttgatacatcatatgaatttgaagttcaaattatataatttttttattcttttaaataaactcaaatgacaagggatgacttttttatttttaccacgaT--GT-TATC-TTT--T----A------AA----TTATTTT-AC-GAAAT-ATG-GACGAT-TTT-GGATTTGGCTG--AAAAAAAT-CCG-TTTT-----GA-TTACTGACATA--AAG---GAAAAACCC-----TTA--TTTTGACTTCATGT----CGTGTAATGATACGTCAGTATGAGATTTGAAGACTC----AAA---T-C-A-CATG-------------AA--TC----------------ATATTACAAGTA-ATAA-GAAT--A--A----A-T----TCC--AT-------T---TAT-----TT--CGTT--ATGTA-T--T--------------G----TACCA-A-GA-----AAAAGA-----AA---A---C-----G-AA----C-GG-AAA-CCTTGCA-CT-TG--------T--GC-T-ACGCACA-------ATGATG----ACTTCCA------GTTCCT
gi|6 : tatGTT-CATCATTTGT-TGTTGATG--T----A---TATTA----TAGGCTTGAT-GAAATTACGTG-TGGT-TTTTGA--TTTCCTG--AAATA--T-TCC-TTTAACTTTGA-TTTCTG-CATC--ACA---GAAAG--CTAGATATTA--TTTTGACTTCATGTAAATTGTGTATTGATACGTT-GTATGA-ATTTGAA-ACTTTTAAAAAT--C-CTATCATGT-TT-TATCAT----ACTCG-ATATC-TT--AAA-ATA----AAAT-----------------------T----T----AT-------T---T-T-----TT--CGTTGGATGGATA--T--------------A----TACCA-TGGA-----GAGA-A-----AA---A---G--GA-A-AA----ttccaa
gi|7 : aattttatgg-GATTAT--GTTCATC-ATT--T----T---T-TTAAATTTATTCTT-AC-GAAAT-ATG-G-CGAT-TTT-GA--TTGGCTGAAAAAAA--T-TCGTTTT------GA-TTACTG-TATTCAAAA---GAAAAC-CC-----TTATTTTTTGACTTC-TGT----CGTGTA--GATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAA-GAAT--A--A----A-T----TTA--ATAA-----T---T-T-----TT--CGTTGTATTGAAG--T--------------A----TA
gi|8 : aaattgT-CATC-ATT--TTTAAA---T-TTT----TATTCTTGAC-GAAATTATG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTACTG-TATC--AAA---GAAAA--CC-----TTA--TTTTGACTTC-TGT----CGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAAGGAAT--A--A----ATT----T----ATAA-----T---T-T-----TT--CGTTGTATTGAAG--T--------------A----TAtac
gi|9 : attggatatgtTTGAT-GAAATTCTG-G-TGAT-TCT-G---TTAGCCG--AATT---T-TTT-TTT------AA-TATCTG-CATT--AAA---GAAAA--CC-----TGA--TTTTGACTTCATAT----TGTGTATTGATACATC-ATATGT-ATTTTAA-ATTC----AAAT--TGT-ATCATGT-TT-TATTACCAAAACTCA-ATGTT-TT--AAA-ATATT-TAAATG-AT-------------------C----T----AC-------T---T-T----------------TGGAGA--T--------------A----TACCA-C-AG-----AAC--------AT---A---C--AA-A----------GAAAA-CTTTTCATtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATCTATTTGTACAGAACAAAGAAAATCTAGTAAATCTAATGTATAAACTTGCACTACACATAATAACGAATACACTATATTTACAAT
Alignments
lowQualScore : 1 11111 11 1111111111 1111 111111 2222222 111111111111 3333333333333333333333333333333 1111111111111111111 33333333333333333333333333333333333333333 22222222 22222222 11 222222 1
lowQualScore : 1 1 1 1 5 1 1 1 1 77777 1 11 5 5 66 9999999999 0000 2 3 66 6 0 5 2 2 2 33 66 77 6 44 111111 3 3 444 888 77 77777 4 44 1 1 6666 0 3 3 3 7777 6666666 44 4444 0 2 66 444444444444 3 66 88 2 9999999999999999999999999999999 444 2 88888 55 33 6666666666666666666 2 2 77777777777777777777777777777777777777777 3 4 4 00000000 66 4 4 22222222 55 3 222222 5 3
lowQualScore : . . . . . . . . . ..... . .. . . .. .......... .... . . .. . . . . . . .. .. .. . .. ...... . . ... ... .. ..... . .. . . .... . . . . .... ....... .. .... . . .. ............ . .. .. . ............................... ... . ..... .. .. ................... . . ......................................... . . . ........ .. . . ........ .. . ...... . .
lowQualScore : 0 0 0 0 0 0 0 0 0 22222 0 00 7 7 99 5555555555 6666 2 6 11 5 4 7 9 9 9 99 88 99 2 66 999999 1 1 444 555 33 77777 7 22 5 5 5555 5 3 3 3 1111 1111111 66 4444 3 7 66 222222222222 3 22 33 1 7777777777777777777777777777777 444 5 88888 99 44 9999999999999999999 9 9 77777777777777777777777777777777777777777 6 7 4 66666666 11 4 4 44444444 77 6 111111 3 2
consensus : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--T--------------A----TACCA-C-GA-----AANA-A-----AA---A---C--AA-A-AA----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
Reference ( family-380 ) : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--T--------------A----TACCA-C-GA-----AANA-A-----AA---A---C--AA-A-AA----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
gi|1 : T-CATT-ATGAGT----G---C-TCA----T-GTATTGATTGAAAC-ATGAG-CAATGTTT-GA--TTGGCTG--AAACA--T-TC--TTT------GA-TTTCCG-TATC--AAA---GAAAA--CC-----T-A--TTT------------------------ACAGGT--GTATGA-AATTGAA-ACTC----AAAT--T-CTATCATGT-TT-TATTATTTGAACT-A-ATGTT-TT--AAA-ATATT-TAAATG-ATAAGGAAT--G--AATTTA-T----T----AT-------T---T-T-----TT--CATTGGATGGAGG--T--------------A----TACCA-T-G---------A-A-----AA---A---C--AA-A-AA----T--GATAA-CTGTGTTTCA-TA--------T--GT-T-ATTCCCA-------ATGATGC--AGTTTTGCAGGCTTGTTTTTCATTTT
gi|1 : attattgcaatatAGGAAT--G--A----A-T----TCGTTAT-------T---T-T-----TTTTCATAGGATGGAGA--T--------------A----CAGCA-C-AC-----AAAA-A-----AACCCATCCC--AA-A-AA----T-GAAAAA-Ctgggatgggtttttttgtgtgctgtatctccatcctatgaaaaaaaataacgaattcattcct
gi|10 : attattgcaatattcattatgagtgctcatgtattgattgaaacatgagcaatgtttgattggctgaaacattctttgatttccgtatcaaagaaaacctatttacaggtgtatgaaattgaaactcaaattctatcatgttttattatttgaactaatgttttaaaatatttaaatgataaggaatgaatttattattttttcattggatggaggtataccatgaaaaacaaaaatgataactgtgtttcatatgttattcccaatgatgcagttttgcaggcttTTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCT--GC-TATC-ACT--T----AACAT-TCA----CAGTCTT-----AAA------G-CAAT-TTT-GA--TTGGCCG--AAAAAAAT-T-G-TTT------GA-TTTTTG-CATC--AAA---GAAAA--CC-----TGA--CTTTCATTTCATGT----TGTGTATTGATACGCC-GAATGA-ATTTGAA-ACTC----AAA---T-C-AT-ATAT-CA-TATTACTTAAACTCA-AT
gi|11 : TGTGTT-TATCCTTTAAGCTCA-ATTTTGTT--AGA-ATATT-TAAATTCATAAGGA-T--A--A----A-T----T----ATATTTTTTT---T-T-----TTG-CGTTGGATGGAGG--T--------------G----TACCA-C-GA-----CGCA-C-----CC---C---C--AA-ACAATTCCC-GGAAAAACTTTGCATCA-TG--------C--GC-T-ACGCG
gi|12 : ATGT-TT-TATCCTTTAAGCTCA-AT--T-TT--AGA-ATATT-TAAATT-ATAAGGAAT--A--A----A-T----TT---AT-------T---T-TTTTTTTT--CGTTGGATGGAGG--T--------------G----TACCA-C-GA-----CCCC-ACCCCCAA---A---C--AATT-CC----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-
gi|13 : ATG-G-GGTT-TTT-AA--TTCCCTA--AAGAA--TGTC---TT------GAATTTCT---AT---AAATACGAAAA--CT-----CAA--TTTTCACTGTATCC----TATATATTGATATGCA-GTATAA-ACTGGAA-ACTC----AAA---T-C-AT
gi|14 : agtatcaattagcacC----AAATCAT-T-ATCATGT-TAAGATTATTTGAATTCA-ATGTT-TTTAAAA-ATATC-TAAATT-ATAGGG--------------------------T-------T---T-TG----TT--TGTTGAATGAAGGTAT--------------A----TACCAGG-GA-----AAAA-A-----AA---A---C--AA-C-AA----C-ataat
gi|15 : AAATTACA-G-TGAT-TTT-GG--TAGGCTG--TAACA--T-TCG-TGT------TA-TCTATG-CATA--AAA---GATAA--CC-----TGA--TTTTGATTT-ATGT----TGT------------C-GTATGA-ATTTGAA-A
gi|16 : TTAAG-G-CAAT-TTT-GA--TTGGCCGA-AAAAA--TGTCG-TTT------GA--TTCTG-CATC--AAAG--GAAAA--CC-----AGA--TTTTGACTCCG-AT----TGTG-ATTGATTCGtc
gi|18 : AAATG-ACAAGGAATTAATTA----A-T----T----AT-------T---T-T-----TT--CGGTGGATGGAGG--T--------------A----TACCA-T-GA-----A
gi|19 : GTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--ccccccccc
gi|2 : aatctTTCCATTTGGGCACACTAGATCGTCAATATATATTTCCAATGTTTGATCTT--AA-CATC-ATT--T----A---T-TCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TCGGATG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTCCATTT----TGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----ACAC--TGC-ATCATGT-TT-TATTATTCAAATTCATATGTT-TT--AAA-ATAGT-CAAATC-ATAAAGAAT--A--T----A-T----C----AT-------A---T-T-----TT--TGTTGGATGGAAA--T--------------C----TACCG-C-GA-----AAAA-A-----AAT--A---T--AA-A-AA----CAGGAAAA-C--TGCATCA-TG--------C--GC-T-ACGCGAG-------ATAATGC--AGCTTTCCT-----GTTATT-ATTTTaaatcgacttt
gi|3 : AATCTTGAT-GAAATCACG-A-CGAT-TCT-GA--TTGGCTG--TGAGA--T-TCG-TTT------GA-TTCCTG-CATC--AA----GAAAA--CT-----TTA--TTTT-ACTTCATGT----TTTGTATTGATCCGTT-ATTTGA-ATTTTAA-ATTC----AAAT--CAT-ATCATGT-TT-TATCATTTAGACAAA-TTGTT-TG--AAA-ATATT-CACATG-ATCAAGAAT--ACTAT---A-TA---T----ATAG-----TAAAT-T-----TA--CATTGGATGGAGG--T--------------A----TACCA-C-GA-----AATA-A-----A-------------------------GAAAA-CTTTGCATCA-TGGATTCATGCAAGT-T-ACGCGCA-------ATGAAGC--AGTTCTCC------GTT-TTC
gi|3 : ttg---T-T-----TT--CGTTGGATGGAGG--T--------------ATGGGTATCA-C-CA-----ACTT-A-----TA---T---CCTGA-A-AA----C-GGAGAA-C--TGCTTCATTG--------C--GCGTAACTTGCATGAATCCATGATGCAAAGTT-----------TTCTTTATTTggatataagttggtgatacccatacctccatccaacgaaaa
gi|4 : ttgaatcttgatgaaatcacgacgattctgattggctgtgagattcgtttgattcctgcatcaagaaaactttattttacttcatgttttgtattgatccgttatttgaattttaaattcaaatcatatcatgttttatcatttagacaaattgtttgaaaatattcacatgatcaagaatactatatatatagtaaatttacattggatggaggtataccacg--T----A---T-TCA----TTATCTTGAT-TAA--CACG-G-CGAT-TTT-GA--TTGGCTA--AACAA--T-TTG-TTG------GA-TTTCTG-CATC--AAA---TAAAA--CC-----TGA--TTTTCAATTCATGT----TGTGCTTTGATACATC-ATATGA-ATTTGAA-GTTC----AAAT--TAT-ATAAT-T-TT-T-TTATTC-----------TT-TT--AAATAAACT-CAAATG-ACAAGGGAT--G--A-----------------C-------T---T-T-----TT--TATT-----------T--------------T----TACCA-C-GA-----AAAA-A-----A------------------------GGACAA-CTTTGCATCA-TG--------C--AC-T-TTGTGAT-------ATGGTGC--AATTTTTC------GTTCTT--TTTT
gi|4 : ttagAAGAAAC--G--A----A-TCTAAT----AT-------C---T-T-----TT--CGTTGGACGGAGG--TGCACTATATAGTATA----TACCA-C-CACTATCACCG-A-----AA---A------AA-G-AA----C-GAAAAA---TTGCACCA-TAT-------C--AC-A-AAGTGC--------ATGATGCAAAGTTGTCC------TTTTTTcggtgatagtggtggtatatactatatagtgcacctccgtccaacgaaaagatattagattcgtttctt
gi|5 : ttagtattcattatcttgattaacacggcgattttgattggctaaacaatttgttggatttctgcatcaaataaaacctgattttcaattcatgttgtgctttgatacatcatatgaatttgaagttcaaattatataatttttttattcttttaaataaactcaaatgacaagggatgacttttttatttttaccacgaT--GT-TATC-TTT--T----A------AA----TTATTTT-AC-GAAAT-ATG-GACGAT-TTT-GGATTTGGCTG--AAAAAAAT-CCG-TTTT-----GA-TTACTGACATA--AAG---GAAAAACCC-----TTA--TTTTGACTTCATGT----CGTGTAATGATACGTCAGTATGAGATTTGAAGACTC----AAA---T-C-A-CATG-------------AA--TC----------------ATATTACAAGTA-ATAA-GAAT--A--A----A-T----TCC--AT-------T---TAT-----TT--CGTT--ATGTA-T--T--------------G----TACCA-A-GA-----AAAAGA-----AA---A---C-----G-AA----C-GG-AAA-CCTTGCA-CT-TG--------T--GC-T-ACGCACA-------ATGATG----ACTTCCA------GTTCCT
gi|6 : tatGTT-CATCATTTGT-TGTTGATG--T----A---TATTA----TAGGCTTGAT-GAAATTACGTG-TGGT-TTTTGA--TTTCCTG--AAATA--T-TCC-TTTAACTTTGA-TTTCTG-CATC--ACA---GAAAG--CTAGATATTA--TTTTGACTTCATGTAAATTGTGTATTGATACGTT-GTATGA-ATTTGAA-ACTTTTAAAAAT--C-CTATCATGT-TT-TATCAT----ACTCG-ATATC-TT--AAA-ATA----AAAT-----------------------T----T----AT-------T---T-T-----TT--CGTTGGATGGATA--T--------------A----TACCA-TGGA-----GAGA-A-----AA---A---G--GA-A-AA----ttccaa
gi|7 : aattttatgg-GATTAT--GTTCATC-ATT--T----T---T-TTAAATTTATTCTT-AC-GAAAT-ATG-G-CGAT-TTT-GA--TTGGCTGAAAAAAA--T-TCGTTTT------GA-TTACTG-TATTCAAAA---GAAAAC-CC-----TTATTTTTTGACTTC-TGT----CGTGTA--GATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAA-GAAT--A--A----A-T----TTA--ATAA-----T---T-T-----TT--CGTTGTATTGAAG--T--------------A----TA
gi|8 : aaattgT-CATC-ATT--TTTAAA---T-TTT----TATTCTTGAC-GAAATTATG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTACTG-TATC--AAA---GAAAA--CC-----TTA--TTTTGACTTC-TGT----CGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-A-------------CACTGAA--TC----------------ATATT-AAAATA-ATAAGGAAT--A--A----ATT----T----ATAA-----T---T-T-----TT--CGTTGTATTGAAG--T--------------A----TAtac
gi|9 : attggatatgtTTGAT-GAAATTCTG-G-TGAT-TCT-G---TTAGCCG--AATT---T-TTT-TTT------AA-TATCTG-CATT--AAA---GAAAA--CC-----TGA--TTTTGACTTCATAT----TGTGTATTGATACATC-ATATGT-ATTTTAA-ATTC----AAAT--TGT-ATCATGT-TT-TATTACCAAAACTCA-ATGTT-TT--AAA-ATATT-TAAATG-AT-------------------C----T----AC-------T---T-T----------------TGGAGA--T--------------A----TACCA-C-AG-----AAC--------AT---A---C--AA-A----------GAAAA-CTTTTCATtac
blockSeqs : A G C A G C A T A GTTTG T TT T G . TTAAAT AATT A G T T T A . T AT AA AA G GT AACTTT A A TCA TAC AC AGATA G TT C A AAAT A G G TTAA TCATT TC GTT T AC AATGTTTTTA T AC TC G AAATTATATTTTTT AAA A TTTTT TT TA GCACTATATAGTATA G G AAAAAAACCCATCCCAAAAAT A T T GATTCATG AA G A ATGAATCC AA T T A C
blockSeqs : GTTC A . . . . AACAT . A G T T . . . . . A AA G G T . . C G C . A . C A . . . . . CTGC TC TAA T GC AATTTTGTT . T T G ACTATATATATAG . . G G . ATGGG . . CCCCACCCCCAAACAATTCCC . T . T . . . G AA C . C T
blockSeqs : A . . . . ATA . A G T T . . . . . . . . G . . . A . . . G . G A . . . . . TCAT TC CA T GC ATATGTTTT . T T G GAATTCGTTAT . . . . . A . . CGCACCCCCAAACAATTCCC . T . . . . . A . T . C .
blockSeqs : . . . . AT . T G T T . . . . . . . . G . . . C . . . G . G G . . . . . TTAT TA TT T AT ATTGTTTG . T G G TAATTAATTAT . . . . . G . . CTATCACCGAAAAAAGAAC . T . . . . . T . G . T .
blockSeqs : . . . AT . T G C C . . . . . . . . G . . . C . . . G . G A . . . . . TCCT TC TT C AT GATATCTT . C C G GAATCTAATAT . . . . . G . . AAAAAAATATAAAAACA . C . . . . . A . T . C
blockSeqs : . . . TT . A G T C . . . . . . . . G . . . C . . . T . C A . . . . . TTGT TC TT T AC AATGTTTT . C G A AAATTTAATAA . . . . . A . . ACTTATATCCTGAAAAC . T . . . . . . . . . .
blockSeqs : . A . A G C T . . . . . . . . G . . . C . . . G . G A . . . . . TC T TT C AC AATTTT . C G A AAATTTATAA . . . . . A . . AAAAAAAACAACAAC . . . . . . .
blockSeqs : A . C T . . . . . . . . G . . . A . . . T . G A . . . . . TC C TT G AC TTTT . A A G AAATTCCAT . . . . . C . . AAAAGAAAACGAAC . . . . . . .
blockSeqs : . T T . . . . . . . . C . . . C . . . T . G A . . . . . TC . TT G . . . A A G AAATTTAT . . . . . A . . AACATACAAA . .
blockSeqs : . . . . . . . . . . . G . . . C . . . T . G A . . . . . TC . . A . . . T A G ATATCAT . . . . . T . . AATAAA .
blockSeqs : . . . . . . . . . T . . . T . . . T . G . . . . . . TC . . . . . . G . TTAT . . . . . G . . AAAAAA
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . CTAC . . . . . A . .
blockSeqs : . . . . . . . . GAC . . . . . A . .
blockSeqs : . T . . . . . A
blockSeqs : . . . . . A
blockSeqCons : ** T* G* AATTTTT***** AANAAAAACAAAAC*************************** ******
originalCons : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCA-ATGTT-TT--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--T--------------A----TACCA-C-GA-----AANA-A-----AA---A---C--AA-A-AA----C-GGAAAA-CTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
finalCons : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-TT-TATCATTTAAACTCAATTTTT-----AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--T--------------A----TACCA-C-GAAANAAAAACAAAAC---------------------------GGAAAA-CTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATCTATTTGTACAGAACAAAGAAAATCTAGTAAATCTAATGTATAAACTTGCACTACACATAATAACGAATACACTATATTTACAAT
Alignments
lowQualScore : 1 11111 11 1111111111 1111 111111 2222222 1111111 2222222222 3333333333333333333333333333333 11111111111111 444444444444444444444444444444444444444444 22222222 22222222 11 222222 1
lowQualScore : 1 1 1 1 5 1 1 1 1 77777 1 11 5 5 66 9999999999 0000 2 3 3 6 0 5 2 2 2 33 66 77 6 44 111111 3 3 444 888 77 77777 4 44 1 1 6666 0 3 3 3 7777 6666666 5 4444 0 2222222 3 3 8888888888 3 66 88 2 9999999999999999999999999999999 444 2 88888 55 88888888888888 5555 2 2 444444444444444444444444444444444444444444 4 4 00000000 66 4 4 22222222 55 3 222222 5 3
lowQualScore : . . . . . . . . . ..... . .. . . .. .......... .... . . . . . . . . . .. .. .. . .. ...... . . ... ... .. ..... . .. . . .... . . . . .... ....... . .... . ....... . . .......... . .. .. . ............................... ... . ..... .. .............. .... . . .......................................... . . ........ .. . . ........ .. . ...... . .
lowQualScore : 0 0 0 0 0 0 0 0 0 22222 0 00 7 7 99 5555555555 6666 2 6 6 5 4 7 9 9 9 99 88 99 2 66 999999 1 1 444 555 33 77777 7 22 5 5 5555 5 3 3 3 1111 1111111 9 4444 3 2222222 5 1 6666666666 3 22 33 1 7777777777777777777777777777777 444 5 88888 99 11111111111111 3333 9 9 999999999999999999999999999999999999999999 7 4 66666666 11 4 4 44444444 77 6 111111 3 2
consensus : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAC-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-T-TTATTATTTAAACTCA-AT-T-TT--T--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--------------TA----TACCA-C-GA-----AANA----A-----AA-AC--------AA--AAC---GGAAAACTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
Reference ( family-380 ) : TTCCNTTTNGGCACGNTAGNTCGTNAATGTGTNTTNCCANTGTT-GATCNT--GT-CATC-ATT--T----A---T-TCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTTCATGT----TGTGTATTGATACGTC-GTATGA-ATTTGAA-ACTC----AAAT--T-C-ATCATGT-T-TTATCATTTAAACTCA-AT-T-TT--T--AAA-ATATT-CAAATG-ATAAGGAAT--A--A----A-T----T----AT-------T---T-T-----TT--CGTTGGATGGAGG--------------TA----TACCA-C-GA-----AANA----A-----AA-AC--------AA--AAC---GGAAAACTTTGCATCA-TG--------C--GC-T-ACGCGCA-------ATGATGC--AGTTTTCC------GTTCTTCATTTT
gi|1 : T-CATT-ATGAGT----G---C-TCA----T-GTATTGATTGAAAC-ATGAG-CAATGTTT-GA--TTGGCTG--AAACA--T-TC--TTT------GA-TTTCCG-TATC--AAA---GAAAA--CC-----T-A--TTT------------------------ACAGGT--GTATGA-AATTGAA-ACTC----AAAT--T-CTATCATGT-T-TTATTATTTGAACT-A-ATGT-TT--T--AAA-ATATT-TAAATG-ATAAGGAAT--G--AATTTA-T----T----AT-------T---T-T-----TT--CATTGGATGGAGG--------------TA----TACCA-T-G---------A----A-----AA-AC--------AA--AAA---TGATAACTGTGTTTCA-TA--------T--GT-T-ATTCCCA-------ATGATGC--AGTTTTGCAGGCTTGTTTTTCATTTT
gi|1 : attattgcaatatAGGAAT--G--A----A-T----TCGTTAT-------T---T-T-----TTTTCATAGGATGGAGA--------------TA----CAGCA-C--A-----CAAA----A-----AA-ACCCATCCCAAA--AAT---GAAAAACtgggatgggtttttttgtgtgctgtatctccatcctatgaaaaaaaataacgaattcattcct
gi|10 : attattgcaatattcattatgagtgctcatgtattgattgaaacatgagcaatgtttgattggctgaaacattctttgatttccgtatcaaagaaaacctatttacaggtgtatgaaattgaaactcaaattctatcatgttttattatttgaactaatgttttaaaatatttaaatgataaggaatgaatttattattttttcattggatggaggtataccatgaaaaacaaaaatgataactgtgtttcatatgttattcccaatgatgcagttttgcaggcttTTCCTTTTTGGCATGGTAACTT-TAAATGTGTTTTGCCACT------TCCT--GC-TATC-ACT--T----AACAT-TCA----CAGTCTT-----AAA------G-CAAT-TTT-GA--TTGGCCG--AAAAAAAT-T-G-TTT------GA-TTTTTG-CATC--AAA---GAAAA--CC-----TGA--CTTTCATTTCATGT----TGTGTATTGATACGCC-GAATGA-ATTTGAA-ACTC----AAA---T-C-AT-ATAT-C-ATATTACTTAAACTCA-AT-
gi|11 : TGTGT-TTATCCTTTAAGCTCA-AT-T-TTGTT--AGA-ATATT-TAAATTCATAAGGA-T--A--A----A-T----T----ATATTTTTTT---T-T-----TTG-CGTTGGATGGAGG--------------TG----TACCA-C-GA-----CGCACCCCC-----AA-AC--------AA--TTCCCGGAAAAACTTTGCATCA-TG--------C--GC-T-ACGCG
gi|12 : ATGT-T-TTATCCTTTAAGCTCA-AT-T-TT-----AGA-ATATT-TAAATT-ATAAGGAAT--A--A----A-T----TT---AT-------T---T-TTTTTTTT--CGTTGGATGGAGG--------------TG----TACCA-C-GA-----CCCC----ACCCCCAA-AC--------AATTCCC---GGAAAACTTTGCATCA-TG--------C--GC-T-
gi|13 : ATG-G-GGTT-TTT-AA--TTCCCTA--AAGAA--TGTC---TT------GAATTTCT---AT---AAATACGAAAA--CT-----CAA--TTTTCACTGTATCC----TATATATTGATATGCA-GTATAA-ACTGGAA-ACTC----AAA---T-C-AT
gi|14 : agtatcaattagcacC----AAATCAT-T-ATCATGT-TAAGATTATTTGAATTCA-ATGT-TT--TTAAAA-ATATC-TAAATT-ATAGGG--------------------------T-------T---T-TG----TT--TGTTGAATGAAGGTA------------TA----TACCAGG-GA-----AAAA----A-----AA-AC--------AAC-AAC---ataat
gi|15 : AAATTACA-G-TGAT-TTT-GG--TAGGCTG--TAACA--T-TCG-TGT------TA-TCTATG-CATA--AAA---GATAA--CC-----TGA--TTTTGATTT-ATGT----TGT------------C-GTATGA-ATTTGAA-A
gi|16 : TTAAG-G-CAAT-TTT-GA--TTGGCCGA-AAAAA--TGTCG-TTT------GA--TTCTG-CATC--AAAG--GAAAA--CC-----AGA--TTTTGACTCCG-AT----TGTG-ATTGATTCGtc
gi|18 : AAATG-ACAAGGAATTAATTA----A-T----T----AT-------T---T-T-----TT--CGGTGGATGGAGG--------------TA----TACCA-T-GA-----A
gi|19 : GTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--ccccccccc
gi|2 : aatctTTCCATTTGGGCACACTAGATCGTCAATATATATTTCCAATGTTTGATCTT--AA-CATC-ATT--T----A---T-TCA----TAGTCTTGAT-GAAATTACG-G-CGAT-TTT-GA--TCGGATG--AAAAA--T-TCG-TTT------GA-TTTCTG-CATC--AAA---GAAAA--CC-----TGA--TTTTGACTCCATTT----TGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----ACAC--TGC-ATCATGT-T-TTATTATTCAAATTCATATGT-TT--T--AAA-ATAGT-CAAATC-ATAAAGAAT--A--T----A-T----C----AT-------A---T-T-----TT--TGTTGGATGGAAA--------------TC----TACCG-C-GA-----AAAA----A-----AATATA-------AA--AACA--GGAAAAC--TGCATCA-TG--------C--GC-T-ACGCGAG-------ATAATGC--AGCTTTCCT-----GTTATT-ATTTTaaatcgacttt
gi|3 : AATCTTGAT-GAAATCACG-A-CGAT-TCT-GA--TTGGCTG--TGAGA--T-TCG-TTT------GA-TTCCTG-CATC--AA----GAAAA--CT-----TTA--TTTT-ACTTCATGT----TTTGTATTGATCCGTT-ATTTGA-ATTTTAA-ATTC----AAAT--CAT-ATCATGT-T-TTATCATTTAGAC-AA-AT-TGTT--TG-AAA-ATATT-CACATG-ATCAAGAAT--ACTAT---A-TA---T----ATAG-----TAAAT-T-----TA--CATTGGATGGAGG--------------TA----TACCA-C-GA-----AATA----A-----A-----------------------GAAAACTTTGCATCA-TGGATTCATGCAAGT-T-ACGCGCA-------ATGAAGC--AGTTCTCC------GTT-TTC
gi|3 : ttg---T-T-----TT--CGTTGGATGGAGG--------------TATGGGTATCA-C-CA-----ACTT----A-----TA-TCCTG-----AA--AAC---GGAGAAC--TGCTTCATTG--------C--GCGTAACTTGCATGAATCCATGATGCAAAGTT-----------TTCTTTATTTggatataagttggtgatacccatacctccatccaacgaaaa
gi|4 : ttgaatcttgatgaaatcacgacgattctgattggctgtgagattcgtttgattcctgcatcaagaaaactttattttacttcatgttttgtattgatccgttatttgaattttaaattcaaatcatatcatgttttatcatttagacaaattgtttgaaaatattcacatgatcaagaatactatatatatagtaaatttacattggatggaggtataccacg--T----A---T-TCA----TTATCTTGAT-TAA--CACG-G-CGAT-TTT-GA--TTGGCTA--AACAA--T-TTG-TTG------GA-TTTCTG-CATC--AAA---TAAAA--CC-----TGA--TTTTCAATTCATGT----TGTGCTTTGATACATC-ATATGA-ATTTGAA-GTTC----AAAT--TAT-ATAAT-T-T-TT-TTATTC-----------T-TT--T--AAATAAACT-CAAATG-ACAAGGGAT--G--A-----------------C-------T---T-T-----TT--TATT-----------------------TT----TACCA-C-GA-----AAAA----A-----A----------------------GGACAACTTTGCATCA-TG--------C--AC-T-TTGTGAT-------ATGGTGC--AATTTTTC------GTTCTT--TTTT
gi|4 : ttagAAGAAAC--G--A----A-TCTAAT----AT-------C---T-T-----TT--CGTTGGACGGAGGTGCACTATATAGTATA----TACCA-C-CACTATCACCG----A-----AA-AA--------AG--AAC---GAAAAA--TTGCACCA-TAT-------C--AC-A-AAGTGC--------ATGATGCAAAGTTGTCC------TTTTTTcggtgatagtggtggtatatactatatagtgcacctccgtccaacgaaaagatattagattcgtttctt
gi|5 : ttagtattcattatcttgattaacacggcgattttgattggctaaacaatttgttggatttctgcatcaaataaaacctgattttcaattcatgttgtgctttgatacatcatatgaatttgaagttcaaattatataatttttttattcttttaaataaactcaaatgacaagggatgacttttttatttttaccacgaT--GT-TATC-TTT--T----A------AA----TTATTTT-AC-GAAAT-ATG-GACGAT-TTT-GGATTTGGCTG--AAAAAAAT-CCG-TTTT-----GA-TTACTGACATA--AAG---GAAAAACCC-----TTA--TTTTGACTTCATGT----CGTGTAATGATACGTCAGTATGAGATTTGAAGACTC----AAA---T-C-A-CATG-------------------A-AT-C------------ATATTACAAGTA-ATAA-GAAT--A--A----A-T----TCC--AT-------T---TAT-----TT--CGTT--ATGTA-T--------------TG----TACCA-A-GA-----AAAAG---A-----AA-AC---------G--AAC---GG-AAACCTTGCA-CT-TG--------T--GC-T-ACGCACA-------ATGATG----ACTTCCA------GTTCCT
gi|6 : tatGTT-CATCATTTGT-TGTTGATG--T----A---TATTA----TAGGCTTGAT-GAAATTACGTG-TGGT-TTTTGA--TTTCCTG--AAATA--T-TCC-TTTAACTTTGA-TTTCTG-CATC--ACA---GAAAG--CTAGATATTA--TTTTGACTTCATGTAAATTGTGTATTGATACGTT-GTATGA-ATTTGAA-ACTTTTAAAAAT--C-CTATCATGT-T-TTATCAT----ACTCG-ATAT-CT--T--AAA-ATA----AAAT-----------------------T----T----AT-------T---T-T-----TT--CGTTGGATGGATA--------------TA----TACCA-TGGA-----GAGA----A-----AA-AG--------GA--AAttccaa
gi|7 : aattttatgg-GATTAT--GTTCATC-ATT--T----T---T-TTAAATTTATTCTT-AC-GAAAT-ATG-G-CGAT-TTT-GA--TTGGCTGAAAAAAA--T-TCGTTTT------GA-TTACTG-TATTCAAAA---GAAAAC-CC-----TTATTTTTTGACTTC-TGT----CGTGTA--GATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-AC-------------------ACTGA-AT-C------------ATATT-AAAATA-ATAA-GAAT--A--A----A-T----TTA--ATAA-----T---T-T-----TT--CGTTGTATTGAAG--------------TA----TAa
gi|8 : aaattgT-CATC-ATT--TTTAAA---T-TTT----TATTCTTGAC-GAAATTATG-G-CGAT-TTT-GA--TTGGCTG--AAAAA--T-TCG-TTT------GA-TTACTG-TATC--AAA---GAAAA--CC-----TTA--TTTTGACTTC-TGT----CGTGTATTGATACGTC-ATATGA-ATTTGAA-ACTC----AAA---T-C-AC-------------------ACTGA-AT-C------------ATATT-AAAATA-ATAAGGAAT--A--A----ATT----T----ATAA-----T---T-T-----TT--CGTTGTATTGAAG--------------TA----TAtac
gi|9 : attggatatgtTTGAT-GAAATTCTG-G-TGAT-TCT-G---TTAGCCG--AATT---T-TTT-TTT------AA-TATCTG-CATT--AAA---GAAAA--CC-----TGA--TTTTGACTTCATAT----TGTGTATTGATACATC-ATATGT-ATTTTAA-ATTC----AAAT--TGT-ATCATGT-T-TTATTACCAAAACTCA-ATGT-TT--T--AAA-ATATT-TAAATG-AT-------------------C----T----AC-------T---T-T----------------TGGAGA--------------TA----TACCA-C-AG-----AAC-----------AT-AC--------AA--A------GAAAACTTTTCATtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATCTATTTGTACAGAACAAAGAAAATCTAGTAAATCTAATGTATAAACTTGCACTACACATAATAACGAATACACTATATTTACAAT