lowQualScore : 1111111111 11 111 111 1 11111 1 1 111 222222222 3333333 222 22222 1 11111 111 111 111111 2222222 111 1111 222222222 11 1111 111 11111111 11111 1111111 11 11111111 111111 1111 1111111111 111111111111 11111111
lowQualScore : 8 3 3 1111111111 0 0 3 3 2 3 5 77 33 555 77 5 000 5 5 77 5 0 5 1 1 3 11111 5 88 1 3 0 0 3 000 333333333 1 4 4444444 5 88888 77 5 5 5 5 333 00000 0 0 66 66 66 4 5 5 44444 0 1 4 555 66 5 4 4 66 4 222 4 4 8 666 5 1 7 4 4 4 222222 0000000 7 000 1 4 4 3333 4 4 000000000 4 11 55 6666 1 666 88888888 3 44444 3 3 888888 3 1 7777777 4 4 77 88 3 99 99999999 4 4 5 2 55 333 000000 3 3 55 3 3 0000 3 4444444444 555 3 888888888888 7777 7777 3 3 44 6666 2 2 2 99999999999 88888 2 2 2 2 00000000 55 2 2 2
lowQualScore : . . . .......... . . . . . . . .. .. ... .. . ... . . .. . . . . . . ..... . .. . . . . . ... ......... . . ....... . ..... .. . . . . ... ..... . . .. .. .. . . . ..... . . . ... .. . . . .. . ... . . . ... . . . . . . ...... ....... . ... . . . .... . . ......... . .. .. .... . ... ........ . ..... . . ...... . . ....... . . .. .. . .. ........ . . . . .. ... ...... . . .. . . .... . .......... ... . ............ .... .... . . .. .... . . . ........... ..... . . . . ........ .. . . .
lowQualScore : 0 1 5 7777777777 8 5 3 3 8 6 7 99 66 999 99 7 000 7 7 99 7 7 7 4 7 0 44444 7 77 4 0 7 1 3 000 111111111 4 3 1111111 7 44444 11 7 0 0 0 111 22222 0 2 99 99 99 1 4 7 33333 7 0 4 999 11 7 4 4 11 4 999 4 4 9 555 0 8 2 4 4 4 888888 9999999 7 444 1 4 4 9999 0 0 000000000 0 00 44 2222 9 777 11111111 1 22222 1 1 888888 6 3 4444444 0 0 55 88 2 55 00000000 0 0 7 5 00 777 555555 6 6 00 6 6 4444 3 6666666666 888 3 111111111111 1111 1111 3 3 66 5555 9 9 9 99999999999 88888 5 5 2 2 99999999 66 5 1 9
consensus : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--TC--AGT--CG-CG---AGTGAACC-GTGACATC-TATCG--G-CGATTT-ATTTTGTA-CATGANAAAAA---AAT-ATTGCAC-TNAAAGCCTGTCTCAACTGAAA---AT--AAA-AA-AATGTT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA-A--CCCGG--N-NTTTTT-AGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-GTTGCATT--TTAA-TNA-TTTTT-CTG-TC-A-T-TTA-TAGCTAAG-A-ATACGTCGAACGA-GAT------AA-T-----AATTTTTTCC--CCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACACG---CTGTATN--TTTANT-----AATACC-GC-----G-GTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTATC------GC-ATTT-GAT-GCT-GTAAACAACC--AGT---TA-N-ATT-G-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATCG-----AA-ATCG-GTAAGTA-CCGC-G--------G--TATC-ATAGGACCC-CGGGCTA
Reference ( gi|3 ) : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--TC--TGT--CA-CG---AGTGAACC-GTGACATC-TATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAA---AAT-ACCGCAC-TCAAAGCCTGTCTCAACAGAAA---AT--AAA-AA-AATGTT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA-A-CCCCGG--A-ATTTTT-AGGT--AC--TTTTCTTAATT--TCCATCACAT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAA-TAA-TTTTT-CTG-TC-A-T-TTA-TAGTTTAG-A-ATACGTCGAACGA-GAT------AA-T-----AATTTTTTTT--CCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACACA---CTGTATA--TTTATT-----AATACC-GC-----G-GTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTATA------GC-ATTT-GATGGCT-ATAAACAACC--AGT---TA-G-ATT-G-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATCA-----AA-ATCG-GTAAGTA-CCGC-G--------G--TATC-ATAGGACCC-CGGGCTAC
gi|2 : TATAACTCCA-TCCTAT-ATATCCGCG----------GGTCCTATGGTACACGCGGT-AGTTGT-AGTTTTTTACA--TC--TGT--CA-CG---AGTGAACC-GTGACATC-TATCG--GCCGATTT-ATTTTGTA-C-TGGAAAAAA---AATAACCGCACTTCAAAGACTGTCCTCACAGAAA---ATAAAAA-AA-AATGTT------AAGAA-TTTTGGAAGT--C-GCATGTCTTTCAATGTTATAGA-CGACTGAA-A--CCCGG--A-ATTTTT-AGGTTAACTATTCTCTTAATTCATCCAACACTT-T-----TTGGCCTCTTAATTTTGAA-TCTTTATTT-CTTA-GTACCAAGAAT-GAATTGCATT--TTAA-TAATTTTTT-CTGTTC-A---TTA-TAGTTTAGAA-ATACGTCGAACGA--AT------AA-------AATTTTTTTTTCCCC-A-G----TTGT-GGCCACCA---------TTAG-G---CCT-CACACA---ACGTATATCTTTATT-----AATACCGGCGCCCGG-GTA-CCA------TAGGAACCT-CGTTTC--AATGTAAACA-CGATGGTATA------GC-ATTTGGAT-GCT-GTAAACAA-C--AGTTTATA-G--TT-G-ATATTGGATTATTTA--TTTA-T--T------G-AT-GAAAGA--GAA-ACAAT-AATAA----G-GCAC----------TT---AC-AAAGC-TT--A---C-----TG----AT----T-GACTGA-AA--CCAC----ACCTAA-CA-GATTTTTA-A----A-TAAATCA-----AATATCG-TAAAGTACCCGC----------G--TATC-ATAGGACCC-CGGGCTA
gi|5 : TATA-CTCCCGTTCTATGATA-CCGCGCCTAACCGCGGGTCCTAAGGTGC-CGCGGT-AGTT-T-AGTTTT--ACA--TC--AGT--CA-CG---AGTCAACC-GTGACATC-TATTATAA-CGATTT-ATTT-GTAACATGATAAAAA---ACT-AATGCAC-TCAAAGCCTGTCTCAACTGAAA---AT--ATA-AA-AATGTT------CAGAA-TTCCAGAAGG--T-GCA-GTCTTATAAT-TTATA-A-CGACTGAA-AACTTCGC--A-TTTTTT-CAGT--AT--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTTCATAATTTTGAATTCTTTATTT-CAAT-GTAC--AAAAT-G-GTTGCATT--TCAA-TCA-TATTT-CTG-TC-A-T-TTA-AAGCTAAG-A-ATATGTCAAACGA-GAT------AG-C-----AA-AATTTTT--CAC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACATC---CTGTATT--ATTACA-----AATACC-AC-----G-ATA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGTGAGGGTGTC------AC-ATTT-G---------------CC--AAT---TA-C-ATT-G-A--------TATTTA--TTTA-C-AT------GAAT-AAAA-A--G-A-ACAATAAATAA----A-GTAC----------TT---AC-AAAGCATT--A---A-----TG----ATCGACT-GACTGA-AA--CCAA----ACCT-A-CA-AATTTTT--C----A-T-GATCG-----AA-ATCG-GTAAGTA-CCGC-G--------G--TATC-ATAGGACCC-CGGGC
gi|12 : TATA-CTCCAGTCCTATGATA-CC-------------------------C-TGC-GT-AGTT-T-AGTGTT--ACAT-TC--AGTTCCATCA---A--GGACC-G-GACATCTTATCG--G-GGATTT-AATTTGTA-CATGAGAAAAAAATAAT-ATTGCAC-TGAAAG-CTGTCTCAACTGAAA---AT----------ATTTTTTTTTAAAGAATTTTTGGAAGA--T--CA-GTTCTTCAAT-TTATA-A-CG-CTGAAGA-TCCCGG--C-CTTTTTAAGGT--AC--TTTTCTTAATT--TCCGTCAC
gi|7 : taATA-CTCCCGTCCTATGATA-C-GCG----------GGTCCTATGGT-------------T-T-AGTTTT--ACT--TC--AGT--CG-CG---AGTGAACT-GTGACATT-TATCG--G-C--TTCGATTTTTTA-CTTGATAAAAA---A-C-ATTGCAC-TCAACACATGTTTCAACTGAAA---AT--ATA-AC-A-TGTT------CAGA--TTTTGGAAGG--T-ACC-GTCTTTCAAT-TCATA-A-C-ACTGAA-A--TCTGGCCA-TTTTTT-CAGT--AC--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTT-TTAATTTTGAATTCTTCATTT-CATT-GTAC--ATAAT-G-GTTGCATT--TTAA-TCA-TTTTT-CTG-TC-A----TG-TAATTT---------GTAAAGCTA-GA-------AA-TTCATCAATTTTTTT-----C-A-G----TTGT-GG-CACCAATAGACAGTTTAGAGAACTCC-TACACC---CT-TATT--TTTTTTTTTACAATA-C-GT-----G-ATA-CCATAGGATTAGGAACCT-CATTTTCAAATGTAAACAGCAAGGGTATC------AC-AACT-GAT-GTT-CGAAACAGCC--AGT---TA-C-ACG-G-A---------ATTTA--TTTA-C-AT------GAAT-GAAA-G--A-A-AAAAT--ATAA----G-GTA----------------AC--AAGC--T--A---T---------------------------A--CCAA----ACCG-A-CA-TATTTTC-------A-TGAATCG-----AA-ATCG-GTAAGTA-CCGC-G--------G--TATCAATAGAA-CC-TGGGCTA
gi|4 : TA-CTCCAGTCCTATGATA-CTGCA----------AGTCTTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ATA--TC--TGT--CA-CG---AGTGAACC-ATGACATC-TATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAA---ACT-ATTGCAC-TGAAAGCCTGTCTCAACTGAAA---AT--AAAGAA-AATGTT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA-A-GTCCGG--C-ATTTTT-AGAT--AA--TTTTCTAAATT--TCCGCCACAT-T-----TTTGTTTGTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAA-TCA-TTTTT-CTG-TC-A-T-TTA-TAGTTTAG-A-ATACGTCGAACGA-GAT------AA-T------ATTTTTTTT--TCC-A-C----TTGT-GG-CACCA---------TTAG-GA--TCC-TACACG---CTCTATA--TTTAGT-----AATACC-GC-----A-GTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTATA------GC-ACTT-AATGGCT-GTAAACAACC--AGT---TA-T-ATT-G-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATCA-----AA-ATCG-GTAAGTA-CCGC-G--------G--TATC-ATAGGACCC-CGGGCT
gi|6 : AGTC-TATGATA-ACTCG----------GGTCCTATGTTAC-CGCGGT-AGTT-T-AGTTTC--ACA--GCACCGT--CG-CC---GGTGAACCCGTGACATC-TATCG--G-GTATTT-AATTTGTA-CATGAGAAAAA---AAT-ATTGCAC-TGAAAGCCTGTCTCA-CTGAAA---TT--A--------TTTTTTTTTAAAGAA-TTTTGGAAAGCAT-GC--GTCTTTCAAT-TTATA-AACGACTGAA-A--TCCAG--C-ATTTTTAAGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGATT-G-ATTGCATT--TTAA-TAT-TTTTT-CTG-TCAA-A-TTA-TAGCTAAG-A-ATACGTCGAAAGA-GAT------AA-T-----AATTTTTTCC--CCCAA-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACACG---CTGAATA--TTTAGT-----AATA-C-GC-----G-GTA-CCA------TGGGAACCTGCGTTTTCAAATGTAAAAAGCGATGGTATC------GCAATTT-GATGGCT-GTAAACAACC--AGT---TG-T-ATT-G-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-AAGA-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----TA----T-ATCTGA-AA--CCAA----ACCT-A-C--TATATAT--A----G-TAATCCATATATAA-TTCG-GTATGTA-CCGC-
gi|4 : aGTCCTATGATA-CCGCG----------G
gi|5 : tactccagtcctatgatactgcaagtcttatggtaccgcggtagtttagttttatatctgtcacgagtgaaccatgacatctatcggcgatttattttgtacatgagaaaaaactattgcactgaaagcctgtctcaactgaaaataaagaaaatgttaagaattttggaaggtgcagtctttcaatttataacgactgaaagtccggcatttttagataattttctaaatttccgccacatttttgtttgttaattttgaattctttatttcttagtacagaatgattgcattttaatcatttttctgtcatttatagtttagaatacgtcgaacgagataatatttttttttccacttgtggcaccattaggatcctacacgctctatatttagtaataccgcagtaccataggaacctcgttttcaaatgtaaacagcgatggtatagcacttaatggctgtaaacaaccagttatattgatatttgattatttatttatatgaatgaaaagaacaataaataaggcacttacaaagcattactgattgactgaaaccaaacctacagatttttaataaatcaaaatcggtaagtaGTCCTATGATA-CCGCG----------Gcccgggct
gi|14 : tatactcccgttctatgataccgcgcctaaccgcgggtcctaaggtgccgcggtagtttagttttacatcagtcacgagtcaaccgtgacatctattataacgatttatttgtaacatgataaaaaactaatgcactcaaagcctgtctcaactgaaaatataaaaatgttcagaattccagaaggtgcagtcttataatttataacgactgaaaacttcgcattttttcagtatttttcttaattcccgtcatgtttttgcttcataattttgaattctttatttcaatgtacaaaatggttgcatttcaatcatatttctgtcatttaaagctaagaatatgtcaaacgagatagcaaaatttttcacagttgtggcaccattaggaccctacatcctgtattattacaaataccacgataccataggaacctcgttttcaaatgtaaacagtgagggtgtcacatttgccaattacattgatatttatttacatgaataaaaagaacaataaataaagtacttacaaagcattaatgatcgactgactgaaaccaaacctacaaatttttcatgatcgaaatcggtaagtaGTCCTATGATA-CCGCG----------Gcccgggc
gi|11 : gtatagcatttgatctctgtaaacaaccagtcataatgatatttgtttgtttacctatatatgaatgaaaataacaataaataaggtacttacaaagcattaatgattgactgaaaccaaacctacagatttttaatgaatcaaaatcgccaagtaATGA-A-CC-CG----------G-TCCTATGGTTC-CGCGGTCAATT-TGATTTTT--ACAATTC--AGT--CA-CACGCAGTGAACC-GTGACTGC-TATCG--G-CGATTT-ATTTTTTACCATGATGAAAA---CGT-ATTACACTTTAAAGCCTATCTCAGCTGAAAATCAT--AAA-AATAAT-TT------CAG-A-TTGTGGAAGG--TAACA-GTCTTTCAAT-TTATA-A-TGACTGAA-A-GACTGG--GCATTTTC-A-TT--AC---TTTCTTAAGT--CCCGTCATGTATATGAATTTGCTTCTTAATTCTGAATTA-TTATTTACT---GTAC--A-AAT-G-GTTGCATT--TTAA-TCA-TTTTT-CTG-CC-cccaggctata
gi|4 : c-CCG-G----------GGTCCTATGATAC-CGCGGT-ACTT-
gi|5 : tactccagtcctatgatactgcaagtcttatggtaccgcggtagtttagttttatatctgtcacgagtgaaccatgacatctatcggcgatttattttgtacatgagaaaaaactattgcactgaaagcctgtctcaactgaaaataaagaaaatgttaagaattttggaaggtgcagtctttcaatttataacgactgaaagtccggcatttttagataattttctaaatttccgccacatttttgtttgttaattttgaattctttatttcttagtacagaatgattgcattttaatcatttttctgtcatttatagtttagaatacgtcgaacgagataatatttttttttccacttgtggcaccattaggatcctacacgctctatatttagtaataccgcagtaccataggaacctcgttttcaaatgtaaacagcgatggtatagcacttaatggctgtaaacaaccagttatattgatatttgattatttatttatatgaatgaaaagaacaataaataaggcacttacaaagcattactgattgactgaaaccaaacctacagatttttaataaatcaaaatcggt-CCG-G----------GGTCCTATGATAC-CGCGGT-ACTT-gct
gi|22 : tatactcccgttctatgataccgcgcctaaccgcgggtcctaaggtgccgcggtagtttagttttacatcagtcacgagtcaaccgtgacatctattataacgatttatttgtaacatgataaaaaactaatgcactcaaagcctgtctcaactgaaaatataaaaatgttcagaattccagaaggtgcagtcttataatttataacgactgaaaacttcgcattttttcagtatttttcttaattcccgtcatgtttttgcttcataattttgaattctttatttcaatgtacaaaatggttgcatttcaatcatatttctgtcatttaaagctaagaatatgtcaaacgagatagcaaaatttttcacagttgtggcaccattaggaccctacatcctgtattattacaaataccacgataccataggaacctcgttttcaaatgtaaacagtgagggtgtcacatttgccaattacattgatatttatttacatgaataaaaagaacaataaataaagtacttacaaagcattaatgatcgactgactgaaaccaaacctacaaatttttcatgatcgaaatcggt-CCG-G----------GGTTCTATGATAC-CGCGGT-Agc
gi|14 : G----------GGTCCTATGATAC-CGCGGT-ACTT-gcta
gi|20 : gtatagcatttgatctctgtaaacaaccagtcataatgatatttgtttgtttacctatatatgaatgaaaataacaataaataaggtacttacaaagcattaatgattgactgaaaccaaacctacagatttttaatgaatcaaaatcgcc----------GGTTCTATGATAC-CGCGGT-ACTT-caggctata
gi|13 : aacctacagatttttaatgaatcgaaatcgccTATA-T-CGACTGAA-A-CCCCGG--C-CTTTTT-AGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAA-TAT-TTTTT-CTG-TTAA-T-TTA-TAGCTAAG-A-ATACGTCGAAAGA-GATAAAAAAAA-A-----AA-----TCC--CCC-A-G----TTGT-GG-CACCA---------TTAG-GA--C
gi|9 : aTTGAATTCTT-ATTT-CTTA-GTAC--AGAATTG-ATTGCATT--TTAAATAT-TTTTTTCTG-TC-AATATTA-TAGCTAAG-A-ATACGTCGAAAGA-GAT------AA-T-----AATTTTTTCC--CCC-AAG----TTGTTGG-CACCA---------TTAG--A--CCT-AACACG---CTA-ATA--TTTAGT-----AATACC-GC-----G-GTAACCT------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTATC------GC-ATTT-GATGGCT-GTAAACAACC--AGT---TT-GTATT-GAATATTTGATTA-TTA--TTTATT-AT-------AAT-TAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-TAAACA-T--A---C-----TG----AT----T-GACTGATAA--CCAA----GCCT-A-CATGATTTTT--A----A-T-TATCAG----AA-ATCG-GTAAGTA-CCGC-G--------G--TATC-ATAGATCCC-CGGGC
gi|10 : TCTTAAGTT-TTGATGTAC--A-AAT-G-GTTGCATTAATCAA-TG--TTGTT-TAA-TC-A-T-TTACTAAATACG-ATATACGTCGAACGAAGAT------AAAG-----AAATTTTTCA--CAC-A-GA---TTGT-GG--ACCA---------GTAG-GA--CCC--ACACG---CTGTAT---TTT--------------------------------------------CT-CGTTTTCAAATGTAAACCGCGAGGGTACATGTATCGG-ATTT-GATCTCT-GT-AACAACCG-AGT---T--T-ATT-G-ATATTTGGTTTTTTA--TATA-T-ATATATAAGAATAGAAT-A--G-A-ACAATAAATAA----GAGCCC----------TT---ACAAAAGCATT--A---CA----TG----AT----T-GACTGA-AATGCTAA----ACCT-A-CA-GATTTTT--A----ATTGAATCG-----AA-ATC--GTATGT--CAGC-G--------GC-TATC-ATAGAACCC---GGCTA
gi|18 : aAA-A-ATACATCAAACGA-GAT------AA-C-----AAAAAATTTT--CAC-A-GAACTTTGT-GG-CACCA---------TTA--GA--CCC-TACAC----CTGTAT---TTT
gi|1 : atatctaTGG-GG-CACCAA--------TTAG-AAAGCTCATAAACAATGCTATATT--TTTATTC----AGTACC-GCACGA-G-GT--CCG------TAGGAAACT-CAGTTTCAAA
gi|14 : cttcacaatacaa-----AGTACC-GC-----G-GTA-TCA------TAGGACCCattcagttacatatgatatgtgttattattaacggtacttacaaacatttaatgattcgactgaaaccaaacctacagatttttacgtgattaataattgcatgtgtaccgcgggtatcattatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|4 : gtatagcatttgatctctgtaaacaaccagtcataatgatatttgtttgtttacctatatatgaatgaaaataacaataaataaggtacttacaaagcattaatgattgactgaaaccaaacctacagatttttaatgaatcaaaatcgccaTACC-GC-----G-GTA-CCA------TAAGAcaggctata
gi|2 : tactccagtcctatgatactgcaagTACC-GC-----GTGTA-CCA------TAGGACCCG-CGgtttagttttatatctgtcacgagtgaaccatgacatctatcggcgatttattttgtacatgagaaaaaactattgcactgaaagcctgtctcaactgaaaataaagaaaatgttaagaattttggaaggtgcagtctttcaatttataacgactgaaagtccggcatttttagataattttctaaatttccgccacatttttgtttgttaattttgaattctttatttcttagtacagaatgattgcattttaatcatttttctgtcatttatagtttagaatacgtcgaacgagataatatttttttttccacttgtggcaccattaggatcctacacgctctatatttagtaataccgcagtaccataggaacctcgttttcaaatgtaaacagcgatggtatagcacttaatggctgtaaacaaccagttatattgatatttgattatttatttatatgaatgaaaagaacaataaataaggcacttacaaagcattactgattgactgaaaccaaacctacagatttttaataaatcaaaatcggtaagtaccgcggtatcataggaccccgggct
gi|6 : tataactccatcctatatatcTACC-GC-----G-GTA-ACA------TAGGACCCG-AGTTATCAgttgtagttttttacatctgtcacgagtgaaccgtgacatctatcggccgatttattttgtactggaaaaaaaataaccgcacttcaaagactgtcctcacagaaaataaaaaaaaatgttaagaattttggaagtcgcatgtctttcaatgttatagacgactgaaacccggaatttttaggttaactattctcttaattcatccaacactttttggcctcttaattttgaatctttatttcttagtaccaagaatgaattgcattttaataattttttctgttcattatagtttagaaatacgtcgaacgaataaaatttttttttccccagttgtggccaccattaggcctcacacaacgtatatctttattaataccggcgcccgggtaccataggaacctcgtttcaatgtaaacacgatggtatagcatttggatgctgtaaacaacagtttatagttgatattggattatttatttattgatgaaagagaaacaataataaggcacttacaaagcttactgattgactgaaaccacacctaacagatttttaaataaatcaaatatcgtaaagtacccgcgtatcataggaccccgggcta
gi|22 : aagtctaTACC-GC-----G-GTA-TCA------TA-GAACCC-CGgtttagtttcacagcaccgtcgccggtgaacccgtgacatctatcgggtatttaatttgtacatgagaaaaaaatattgcactgaaagcctgtctcactgaaattatttttttttaaagaattttggaaagcatgcgtctttcaatttataaacgactgaaatccagcatttttaaggtacttttcttaatttccgtcacgtttttgcttcttaattttgaattctttatttcttagtacagattgattgcattttaatattttttctgtcaaattatagctaagaatacgtcgaaagagataataattttttcccccaagttgtggcaccattaggaccctacacgctgaatatttagtaatacgcggtaccatgggaacctgcgttttcaaatgtaaaaagcgatggtatcgcaatttgatggctgtaaacaaccagttgtattgatatttgattatttatttatatgaatgaaaaagaaacaataaataaggcacttacaaagcattactgtatatctgaaaccaaacctactatatatagtaatccatatataattcggtatgtaccgc
gi|14 : GTATA------GC-ATTT-GATCTCT-GTAAACAACC--AGT---CA-T-AAT-G-ATATTTGTTTGTTTACCTATA-T-AT------GAAT-GAAA-A--T-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---A-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATCA-----AA-ATCG-CCAAGTA-CCGC-G--------G--TATC-ATAGGACCC-CAGGCTAggcta
gi|15 : C-ATTT-GAT--CTCATA--CAACC--AGT---TA-C-ATT-G-A-ATTTTATTTTTTA--TTTA-C-GT------GA-T-GAAA-A--G-A-TAAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--AGACC-----TAATGCAT----C-GACTGA---------------TT-GCCA-GATTTTT--C----A-GGTATCG-----AA-ATCG-GTAAATA-CCG--G--------GAACATC-ATAGGATCT-CGTGCTAta
gi|8 : -ATTT-GATCCTC-ATA--CAACCCCAGTC--TACG-ATTTG-ATATTTATTTATTTA--TTTA-CGAT------GAAT-GAAA-A--G-ACATAATAAATAACTTAG-GTAC----------TT---AC-AAAGCATTAGA---CCATAATG----AT----C-GACTG--------------ATTG-A-CA-GATTTTTTCA----G-GGTATCT-----GA-ATC--GTAAATA-CAGC-GTAGGCTACA--TCTC-AAAGGATCT-CGTGCTA
gi|16 : aTTATTTA--TTTA-T-AT------GAAT-GGAA-A--G-A-ACAATAAATAA----G-GTACAAAAATGTACTTGTAAC-AAAGTAT--------------G----AT----T-GAATGA-AA--CCAATTAAACCT-A-CA-TATTTTT--A----A-TGAATCG-----AA-GTCG-GTAAATA-TCGC-G--------G--TATC-ATAAAACCC-CGGGCatgagactaaatagtagttgccgaacttccgctacacattggagattacatgaaacggggcttagtagtctgcaatactgtagtaagatcccgaaacgtctttggtgcacacatcttggtagcagaaaaggtctttacagtgcgcaaaaacgtctggtgcgaaaggtacttggtgccgaaaagtc
gi|1 : gtatgtatactcccgtTAAC---G-GTAC----------TT---AC-AAA-CATTT-A---A-----TG----AT----TCGACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--ACGTGA-TTAAT--------A-ATTGCATGTGTA-CCGCGG--------G--TATC-AT
gi|20 : cttcacaatacaatggggcaccaattagaaagctcataaacaatgctatatttttattcagtaccgcacgaggtccgtaggaaactcagtttcaaaattcagttacatatgatatgtgttattatA----ACCT-A-CA-GATTTTT--A----A-TGAATCG-----AA-ATCG-CCAAGTA-CCGC-G--------G--TATC-ATAGAACCtatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|11 : -A-CT-GAATTGT--A----A--AAATCA-----AA--TTG-------A-CCGC-G--------G--AACC-ATAGGA--C-CGGGTT
gi|21 : catg--A----A-TGAATCA-----AA-ATCG-GTAAGTA-CCGC-G--------G--TATcacacgcagtgaaccgtgactgctatcggcgatttattttttaccatgatgaaaacgtattacactttaaagcctatctcagctgaaaatcataaaaataatttcagattgtggaaggtaacagtctttcaatttataatgactgaaagactgggcattttcattactttcttaagtcccgtcatgtatatgaatttgcttcttaattctgaattattatttactgtacaaatggttgcattttaatcatttttctgcc
gi|2 : A-----AA-AACT-ACAACTA-CCGC-GT-------G--TACC-ATAGGACCCGCGG
gi|6 : tataactccatcctatatatAACTA-CCGC-G--------G--TAAC-ATAGGA-CC-CGAGTTAtacatctgtcacgagtgaaccgtgacatctatcggccgatttattttgtactggaaaaaaaataaccgcacttcaaagactgtcctcacagaaaataaaaaaaaatgttaagaattttggaagtcgcatgtctttcaatgttatagacgactgaaacccggaatttttaggttaactattctcttaattcatccaacactttttggcctcttaattttgaatctttatttcttagtaccaagaatgaattgcattttaataattttttctgttcattatagtttagaaatacgtcgaacgaataaaatttttttttccccagttgtggccaccattaggcctcacacaacgtatatctttattaataccggcgcccgggtaccataggaacctcgtttcaatgtaaacacgatggtatagcatttggatgctgtaaacaacagtttatagttgatattggattatttatttattgatgaaagagaaacaataataaggcacttacaaagcttactgattgactgaaaccacacctaacagatttttaaataaatcaaatatcgtaaagtacccgcgtatcataggaccccgggcta
gi|22 : aagtctatgaTA-CCGC-G--------G--TATC-ATAGAACCC-CGGGCTAtagtttcacagcaccgtcgccggtgaacccgtgacatctatcgggtatttaatttgtacatgagaaaaaaatattgcactgaaagcctgtctcactgaaattatttttttttaaagaattttggaaagcatgcgtctttcaatttataaacgactgaaatccagcatttttaaggtacttttcttaatttccgtcacgtttttgcttcttaattttgaattctttatttcttagtacagattgattgcattttaatattttttctgtcaaattatagctaagaatacgtcgaaagagataataattttttcccccaagttgtggcaccattaggaccctacacgctgaatatttagtaatacgcggtaccatgggaacctgcgttttcaaatgtaaaaagcgatggtatcgcaatttgatggctgtaaacaaccagttgtattgatatttgattatttatttatatgaatgaaaaagaaacaataaataaggcacttacaaagcattactgtatatctgaaaccaaacctactatatatagtaatccatatataattcggtatgtaccgc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): CCTACACATTGGCAGATTAAAGAACGGGGTGTAGTCTACCAATACTGTAGTAGATCCCGAAACGGGTCTTGGTGCCCGAAACATCTTGGTACCGAAGACGTCTTTTACAGGTTGCAAAACGGTCTTGGTGGCCGAAAGGGTCTTGGTGCCGAAAAG
Unaligned ( gi|19 ): ATGAACGTAAAATATGTAGCGAAACATTGGCAGATTAAAGGGAAGGGGATGTAGTCTGCAATACTGTAGTAGAT
Alignments
lowQualScore : 2222222222 1 1 2222222 222222 11 11111 11111 111111 111111111 1111 111111111 11 1111 11111 22222 111111 111111 222 1111111111 111111111111 11111111
lowQualScore : 6 5 5 1111111111 5 5 5 5 5 66 66 5 777 66 77 888 5 5 66 5 5 0 0 1 888 5 5 0 1 0000000 0 66 888888 5 66 55 55 5 4 4 66 00 9999 8888 555 66 66 66 5 22222 4 0 4 55 4 4 4 55 666 55 4 88888 888 4 55 4 4 4 55 999999 55 555555555 8 2222 3 3 888888888 3 00 4 4444 4 2 1 2 55555 3 4 00000 4 222222 4 222222 1 3 3 555 5 88 7 3 1 88 3 4 1 44 3 3 999999 3 3 44 3 3 9999 3 3333333333 555 3 555555555555 6666 6666 3 3 44 6666 2 2 2 9999999 2 1 33 66666 2 2 2 2 22222222 66 2
lowQualScore : . . . .......... . . . . . .. .. . ... .. .. ... . . .. . . . . . ... . . . . ....... . .. ...... . .. .. .. . . . .. .. .... .... ... .. .. .. . ..... . . . .. . . . .. ... .. . ..... ... . .. . . . .. ...... .. ......... . .... . . ......... . .. . .... . . . . ..... . . ..... . ...... . ...... . . . ... . .. . . . .. . . . .. . . ...... . . .. . . .... . .......... ... . ............ .... .... . . .. .... . . . ....... . . .. ..... . . . . ........ .. .
lowQualScore : 7 0 6 9999999999 2 0 0 0 0 99 99 0 666 99 00 888 0 0 99 0 0 0 4 0 888 0 0 0 0 6666666 1 99 888888 0 99 22 11 0 4 4 11 66 6666 1111 222 11 11 11 0 55555 0 9 0 55 1 0 0 55 111 55 0 00000 222 0 55 0 0 0 55 999999 55 333333333 0 5555 6 6 222222222 6 00 0 2222 0 3 0 6 66666 9 4 66666 4 888888 4 888888 1 6 6 555 1 66 3 6 0 66 6 4 5 66 3 3 666666 3 3 66 3 3 6666 1 5555555555 444 1 222222222222 5555 5555 1 1 22 1111 9 9 9 5555555 7 0 00 77777 7 7 7 5 33333333 33 9
consensus : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAA---AAT-ATTGCAC-TCAAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GG--CNTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GATA--A-N----AA--TTTTT------TCCCCC-AG----TTG-TGG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGT-ACCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
Reference ( family-3798 ) : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CG-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGANAAAAA---AAT-ATTGCAC-TNAAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GG--NNTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-GTTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GATA--A-T----AA--TTTTT------TCCCCC-AG----TTG-TGG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGT-ACCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TANA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|1 : TG-GGG-CACCAA--------TTAG-AAAGCTCATAAACAATGC-TATATTTTTATTC----AGTACC-GCACGA-GGT--CCG------TAGGAAACT-CAGTTTCAAA
gi|1 : cttcacaatacaaTAAC---G-GTAC----------TT---AC-AAA-CATTT-A---A-----TG----AT----TCGACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--ACGTGA-TTAAT---------A-A-TTGCATGTGTACCGCGG--------G--TATC-ATattcagttacatatgatatgtgttattattaacggtacttacaaacatttaatgattcgactgaaaccaaacctacagatttttacgtgattaataattgcatgtgtaccgcgggtatcattatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|10 : cttcacaatacaatggggcaccaattagaaagctcataaacaatgctatatttttattcagtaccgcacgaggtccgtaggaaactcagtttcaaaattcagttacatatgatatgtgttattatTCTTAAGTT-TTGATGTAC--A-AAT-G-GTTGCATTAATCAATG--TTGTT--TAA-TC-----A-T-TTACT--AAATACG-ATATACGTCGAACGAAGATA--AAG----AA--ATTTT------TCACAC-AGA---TTG-TGG--ACCA---------GTAG-GA--CCC--ACAC---GC-TGTATTTT--------------------------------------------CT-CGTTTTCAAATGTAAACCGCGAGGGTACATGTATCGG-ATTT-GAT-CTCTGTAA-CAACCG-AG-T-T-TA--TTG-ATATTTGGTTTTTTA--TATA-T-ATATATAAGAATAGAAT-A--G-A-ACAATAAATAA----GAGCCC----------TT---ACAAAAGCATT--A---CA----TG----AT----T-GACTGA-AATGCTAA----ACCT-A-CA-GATTTTT--A----ATTGAATC-GA-----A-A-TC--GTATGT-CAGC-G--------GC-TATC-ATAGAACCC--GGCTAtatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|11 : aATGA-A-CC-CG----------G-TCCTATGGTTC-CGCGGTCAATT-TGATTTTT--ACAATT-CA--GT--CA-CACGCAGTGAACC-GTGACTGCT-ATCG--G-CGATTT-ATTTTTTACCATGATGAAAA---CGT-ATTACACTTTAAAGCCTATCTCAGCTGAAAAT--CATA-AAAATAATTT------CAG-A-TTGTGGAAGG--TAACA-GTCTTTCAAT-TTATA-A-TGACTGAAAGA--CT--G-GG--CATTTTC-A--TT--AC---TTTCTTAAGT--CCCGTCATGTATATGAATTTGCTTCTTAATTCTGAATTA-TTATTTACT---GTAC--A-AAT-G-GTTGCATT--TTAATCA-TTTTT--CTG-CC-----
gi|12 : cTATA-CTCCAGTCCTATGATA-CC-------------------------C-TGCG-T-AGTT-T-AGTGTT--ACA--TTCA--GTTCCATCA---AG--GACC-G-GACATCTTATCG--G-GGATTT-AATTTGTA-CATGAGAAAAAAATAAT-ATTGCAC-TGAAAG-CTGTCTCAACTGAAAAT----------ATT--TTTTTTTAAAGAATTTTTGGAAGA--T--CA-GTTCTTCAAT-TTATA-A-CG-CTGAA--GATCC--C-GG--CCTTTTTAA-GGT--AC--TTTTCTTAATT--TCCGTCAC
gi|13 : taTATA-T-CGACTGAA--A--CC--CCGG--CCTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATAT-TTTTT--CTG-TTA----A-T-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GATA--A-A----AA-------AAAAAATCCCCC-AG----TTG-TGG-CACCA---------TTAG-GA--C
gi|14 : aGTA------TAGC-ATTT-GAT-CTCTGTAAACAACC--AG-T-CATA--ATG-ATATTTGTTTGTTTACCTATA-T-AT------GAAT-GAAA-A--T-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---A-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-AA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGGACCCCAGGCTA
gi|15 : C-ATTT-GAT---CT-CATACAACC--AG-T-TACA--TTG-A-ATTTTATTTTTTA--TTTA-C-GT------GA-T-GAAA-A--G-A-TAAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--AGACC-----TAATGCAT----C-GACTGA---------------TT-GCCA-GATTTTT--C----A-GGTATC-GA-----A-A-TCG-GTAAATACCG--G--------GAACATC-ATAGGATCTCGTGCTAta
gi|16 : TTATTTA--TTTA-T-AT------GAAT-GGAA-A--G-A-ACAATAAATAA----G-GTACAAAAATGTACTTGTAAC-AAAGTAT--------------G----AT----T-GAATGA-AA--CCAATTAAACCT-A-CA-TATTTTT--A----A-TGAATC-GA-----A-G-TCG-GTAAATATCGC-G--------G--TATC-ATAAAACCCCGGGC
gi|18 : gtatgtatactcccgtA-T--ATCTAAA-A-ATACATCAAACGA-GATA--A-CAAAAAA--TTTT----------CAC-AGAACTTTG-TGG-CACCA---------TTA--GA--CCC-TACAC----C-TGTATTTT
gi|2 : TATAACTCCA-TCCTAT-ATATCCGCG----------GGTCCTATGGTACACGCGGT-AGTTGT-AGTTTTTTACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--GCCGATTT-ATTTTGTA-C-TGGAAAAAA---AATAACCGCACTTCAAAGACTGTCCTCACAGAAAATAAAA-A-AAAATG--TT------AAGAA-TTTTGGAAGT--C-GCATGTCTTTCAATGTTATAGA-CGACTGAA--A--CC--C-GG--AATTTTT-A-GGTTAACTATTCTCTTAATTCATCCAACACTT-T-----TTGGCCTCTTAATTTTGAA-TCTTTATTT-CTTA-GTACCAAGAAT-GAATTGCATT--TTAATAATTTTTT--CTGTTC-----A---TTA-T--AGTTTAGAA-ATACGTCGAACGA--ATA--A------AATTTTTTT------TTCCCC-AG----TTG-TGGCCACCA---------TTAG-G---CCT-CACACA--ACGTATATCTTTATT-----AATACCGGCGCCCGGGT-ACCA------TAGGAACCT-CGTTTC--AATGTAAACA-CGATGGTA------TAGC-ATTTGGAT-G-CTGTAAACAA-C--AGTT-TATAG-TTG-ATATTGGATTATTTA--TTTA-T--T------G-AT-GAAAGA--GAA-ACAAT-AATAA----G-GCAC----------TT---AC-AAAGC-TT--A---C-----TG----AT----T-GACTGA-AA--CCAC----ACCTAA-CA-GATTTTTA-A----A-TAAATC-AA-----ATA-TCG-TAAAGTACC-C-GC-------G--TATC-ATAGGACCCCGGGCTA
gi|20 : A----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGAACC
gi|21 : --A----A-TGAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TAT
gi|22 : TACCGC-G--------G--TATC-ATAGAACCCCGGGCTA
gi|3 : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAA---AAT-ACCGCAC-TCAAAGCCTGTCTCAACAGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--CCGG--AATTTTT-A-GGT--AC--TTTTCTTAATT--TCCATCACAT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATAA-TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GATA--A-T----AA--TTTTT------TTTCCC-AG----TTG-TGG-CACCA---------TTAG-GA--CCC-TACAC---AC-TGTATATTTATT-----AATACC-GC-----GGT-ACCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ATTT-GATGG-CTATAAACAACC--AG-T-TAGA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|4 : TA-CTCCAGTCCTATGATA-CTGCA----------AGTCTTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ATA--T-CT--GT--CA-CG---AGTGAACC-ATGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAA---ACT-ATTGCAC-TGAAAGCCTGTCTCAACTGAAAAT--AA-AGAAAATG--TT------AAGAA-TTTTGGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--AG-TC--C-GG--CATTTTT-A-GAT--AA--TTTTCTAAATT--TCCGCCACAT-T-----TTTGTTTGTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATCA-TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GATA--A-T----A---TTTTT------TTTTCC-AC----TTG-TGG-CACCA---------TTAG-GA--TCC-TACAC---GC-TCTATATTTAGT-----AATACC-GC-----AGT-ACCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ACTT-AAT-GGCTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTc
gi|5 : TATA-CTCCCGTTCTATGATA-CCGCGCCTAACCGCGGGTCCTAAGGTGC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTCAACC-GTGACATCT-ATTATAA-CGATTT-ATTT-GTAACATGATAAAAA---ACT-AATGCAC-TCAAAGCCTGTCTCAACTGAAAAT--AT-A-AAAATG--TT------CAGAA-TTCCAGAAGG--T-GCA-GTCTTATAAT-TTATA-A-CGACTGAA--A--ACTTC-GC--ATTTTTT-C-AGT--AT--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTTCATAATTTTGAATTCTTTATTT-CAAT-GTAC--AAAAT-G-GTTGCATT--TCAATCA-TATTT--CTG-TC-----A-T-TTA-A--AGCTAAG-A-ATATGTCAAACGA-GATAGCA-A----AA--TTTTT---------CAC-AG----TTG-TGG-CACCA---------TTAG-GA--CCC-TACAT---CC-TGTATTATTACA-----AATACC-AC-----GAT-ACCA------TAGGAACCT-CGTTTTCAAATGTAAACAGTGAGGGTG------TCAC-ATTT-G---------------CC--AA-T-TACA--TTG-A--------TATTTA--TTTA-C-AT------GAAT-AAAA-A--G-A-ACAATAAATAA----A-GTAC----------TT---AC-AAAGCATT--A---A-----TG----ATCGACT-GACTGA-AA--CCAA----ACCT-A-CA-AATTTTT--C----A-TG-ATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGC
gi|6 : AGTC-TATGATA-ACTCG----------GGTCCTATGTTAC-CGCGGT-AGTT-T-AGTTTC--ACA--G-CACCGT--CG-CC---GGTGAACCCGTGACATCT-ATCG--G-GTATTT-AATTTGTA-CATGAGAAAAA---AAT-ATTGCAC-TGAAAGCCTGTCTCA-CTGAAATT--A--------TT--TTTTTTTAAAGAA-TTTTGGAAAGCAT-GC--GTCTTTCAAT-TTATA-AACGACTGAA--A--TC--C-AG--CATTTTT-AAGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGATT-G-ATTGCATT--TTAATAT-TTTTT--CTG-TCA----A-A-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GATA--A-T----AA--TTTTT------TCCCCCAAG----TTG-TGG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGAATATTTAGT-----AATA-C-GC-----GGT-ACCA------TGGGAACCTGCGTTTTCAAATGTAAAAAGCGATGGTA------TCGCAATTT-GATGG-CTGTAAACAACC--AG-T-TGTA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-AAGA-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----TA----T-ATCTGA-AA--CCAA----ACCT-A-C--TATATAT--A----G-T-AATC-CATATATA-ATTCG-GTATGTACCGC-
gi|7 : aATA-CTCCCGTCCTATGATA-C-GCG----------GGTCCTATGGT-------------T-T-AGTTTT--ACT--T-CA--GT--CG-CG---AGTGAACT-GTGACATTT-ATCG--G-C--TTCGATTTTTTA-CTTGATAAAAA---A-C-ATTGCAC-TCAACACATGTTTCAACTGAAAAT--AT-A-ACA-TG--TT------CAGA--TTTTGGAAGG--T-ACC-GTCTTTCAAT-TCATA-A-C-ACTGAA--A--TC--T-GGCCATTTTTT-C-AGT--AC--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTT-TTAATTTTGAATTCTTCATTT-CATT-GTAC--ATAAT-G-GTTGCATT--TTAATCA-TTTTT--CTG-TCATGTAA-T-TTG-TAAAGCTAGA-A-ATTCATC--------------------AA--TTTTT------T---TC-AG----TTG-TGG-CACCAATAGACAGTTTAGAGAACTCC-TACAC---CC-T-TATTTTTTTTTTTACAATA-C-GT-----GAT-ACCATAGGATTAGGAACCT-CATTTTCAAATGTAAACAGCAAGGGTA------TCAC-AACT-GAT-G-TTCGAAACAGCC--AG-T-TACA--CGG-A---------ATTTA--TTTA-C-AT------GAAT-GAAA-G--A-A-AAAAT--ATAA----G-GTA----------------AC--AAGC--T--A---T---------------------------A--CCAA----ACCG-A-CA-TATTTTC-------A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATCAATAGAA-CCTGGGCTA
gi|8 : -ATTT-GAT-C-CT-CATACAACCCCAG-TCTACGATTTG-ATATTTATTTATTTA--TTTA-CGAT------GAAT-GAAA-A--G-ACATAATAAATAACTTAG-GTAC----------TT---AC-AAAGCATTAGA---CCATAATG----AT----C-GACTG--------------ATTG-A-CA-GATTTTTTCA----G-GGTATC-TG-----A-A-TC--GTAAATACAGC-GTAGGCTACA--TCTC-AAAGGATCTCGTGCTA
gi|9 : aTTGAATTCTT-ATTT-CTTA-GTAC--AGAATTG-ATTGCATT--TTAAATA-TTTTTTTCTG-TC-----AATATTA-T--AGCTAAG-A-ATACGTCGAAAGA-GATA--A-T----AA--TTTTT------TCCCCCAAG----TTGTTGG-CACCA---------TTA--GA--CCT-AACAC---GC-TA-ATATTTAGT-----AATACC-GC-----GGTAACCT------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GATGG-CTGTAAACAACC--AGTT-TGTA--TTGAATATTTGATTA-TTA--TTTATT-AT-------AAT-TAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-TAAACA-T--A---C-----TG----AT----T-GACTGATAA--CCAA----GCCT-A-CATGATTTTT--A----A-TT-ATCAGA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGATCCCCGGGCatgagactaaatagtagttgccgaacttccgctacacattggagattacatgaaacggggcttagtagtctgcaatactgtagtaagatcccgaaacgtctttggtgcacacatcttggtagcagaaaaggtctttacagtgcgcaaaaacgtctggtgcgaaaggtacttggtgccgaaaagtc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CCTACACATTGGCAGATTAAAGAACGGGGTGTAGTCTACCAATACTGTAGTAGATCCCGAAACGGGTCTTGGTGCCCGAAACATCTTGGTACCGAAGACGTCTTTTACAGGTTGCAAAACGGTCTTGGTGGCCGAAAGGGTCTTGGTGCCGAAAAG
Unaligned ( gi|19 ): ATGAACGTAAAATATGTAGCGAAACATTGGCAGATTAAAGGGAAGGGGATGTAGTCTGCAATACTGTAGTAGAT
Alignments
lowQualScore : 2222222222 2222222 222222 11 11111 111111111 11111111 1111 111111111 11 1111 11111 22222 111111 111111 222 1111111111 111111111111 11111111
lowQualScore : 6 5 5 1111111111 5 5 5 5 5 66 66 5 777 66 5 888 5 5 66 5 5 5 55 1 888 5 5 5 66 0000000 0 66 888888 88 66 55 55 5 4 4 66 00 9999 777 555 66 66 66 5 22222 4 0 4 55 4 4 4 55 666 55 4 777777777 4 55 4 4 4 8888 55 66 44444444 888 4 4 2222 3 3 888888888 3 00 4 4444 4 2 1 2 55555 3 4 00000 4 222222 4 222222 1 3 3 555 5 88 7 3 88 3 4 1 44 3 3 999999 3 3 44 3 3 9999 3 3333333333 555 3 555555555555 6666 6666 3 3 44 6666 2 2 2 9999999 2 1 33 66666 2 2 2 2 22222222 66 2
lowQualScore : . . . .......... . . . . . .. .. . ... .. . ... . . .. . . . .. . ... . . . .. ....... . .. ...... .. .. .. .. . . . .. .. .... ... ... .. .. .. . ..... . . . .. . . . .. ... .. . ......... . .. . . . .... .. .. ........ ... . . .... . . ......... . .. . .... . . . . ..... . . ..... . ...... . ...... . . . ... . .. . . .. . . . .. . . ...... . . .. . . .... . .......... ... . ............ .... .... . . .. .... . . . ....... . . .. ..... . . . . ........ .. .
lowQualScore : 7 0 6 9999999999 2 0 0 0 0 99 99 0 666 99 0 888 0 0 99 0 0 0 44 4 888 0 0 0 44 6666666 1 99 888888 22 99 22 11 0 4 4 11 66 6666 111 222 11 11 11 0 55555 0 9 0 55 1 0 0 55 111 55 0 777777777 0 55 0 0 0 5555 55 44 00000000 777 0 0 5555 6 6 222222222 6 00 0 2222 0 3 0 6 66666 9 4 66666 4 888888 4 888888 1 6 6 555 1 66 3 6 66 6 4 5 66 3 3 666666 3 3 66 3 3 6666 1 5555555555 444 1 222222222222 5555 5555 1 1 22 1111 9 9 9 5555555 7 0 00 77777 7 7 7 5 33333333 33 9
consensus : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
Reference ( family-3798 ) : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|1 : TGG-GG-CACCAA--------TTAG-AAAGCTCATAAACAATGC-TATATTTTTATTC----AGTACC-GCACGA-GGT--CCG------TAGGAAACT-CAGTTTCAAA
gi|1 : cttcacaatacaaTAAC---G-GTAC----------TT---AC-AAA-CATTT-A---A-----TG----AT----TCGACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--ACGTGA-TTAAT---------A-A-TTGCATGTGTACCGCGG--------G--TATC-ATattcagttacatatgatatgtgttattattaacggtacttacaaacatttaatgattcgactgaaaccaaacctacagatttttacgtgattaataattgcatgtgtaccgcgggtatcattatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|10 : cttcacaatacaatggggcaccaattagaaagctcataaacaatgctatatttttattcagtaccgcacgaggtccgtaggaaactcagtttcaaaattcagttacatatgatatgtgttattatTCTTAAGTT-TTGATGTAC--A-AAT-G-GTTGCATTAATCAATG--TTGTT--TAA-TC-----A-T-TTACT--AAATACG-ATATACGTCGAACGAAGAT----A--AAGA-A------ATTTTTCACAC-A-GA---TTGT-GG--ACCA---------GTAG-GA--CCC--ACAC---GC-TGTATTTT--------------------------------------------CT-CGTTTTCAAATGTAAACCGCGAGGGTACATGTATCGG-ATTT-GAT-CTCTGTAA-CAACCG-AG-T-T-TA--TTG-ATATTTGGTTTTTTA--TATA-T-ATATATAAGAATAGAAT-A--G-A-ACAATAAATAA----GAGCCC----------TT---ACAAAAGCATT--A---CA----TG----AT----T-GACTGA-AATGCTAA----ACCT-A-CA-GATTTTT--A----ATTGAATC-GA-----A-A-TC--GTATGT-CAGC-G--------GC-TATC-ATAGAACCC--GGCTAtatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|11 : aATGA-A-CC-CG----------G-TCCTATGGTTC-CGCGGTCAATT-TGATTTTT--ACAATT-CA--GT--CA-CACGCAGTGAACC-GTGACTGCT-ATCG--G-CGATTT-ATTTTTTA-CCATGATGAAAA---CGT-ATTACAC-TTTAAAGCCTATCTCAGCTGAAAAT--CATA-AAAATAATTT------CAGA--TTGTGGAAGG--TAACA-GTCTTTCAAT-TTATA-A-TGACTGAAAGA--CT--G-GGC--ATTTTC-A--TT--AC---TTTCTTAAGT--CCCGTCATGTATATGAATTTGCTTCTTAATTCTGAATTA-TTATTTACT---GTAC--A-AAT-G-GTTGCATT--TTAATCA-TTTTT--CTG-CC-----
gi|12 : cTATA-CTCCAGTCCTATGATA-CC-------------------------C-TGCG-T-AGTT-T-AGTGTT--ACA--TTCA--GTTCCATCA---AG--GACC-G-GACATCTTATCG--G-GGATTT-AATTTGTA-C-ATGAGAAAAAAATAAT-ATTGCAC-TG-AAAG-CTGTCTCAACTGAAAAT----------ATT--TTTTTTTAAAGAATTTTTGGAAGA--T--CA-GTTCTTCAAT-TTATA-A-CG-CTGAA--GATCC--C-GGC--CTTTTTAA-GGT--AC--TTTTCTTAATT--TCCGTCAC
gi|13 : taTATA-T-CGACTGAA--A--CC--CCGGC--CTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATAT-TTTTT--CTG-TT-----AAT-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AA-A-AAAAAAAT-----CCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--C
gi|14 : aGTA------TAGC-ATTT-GAT-CTCTGTAAACAACC--AG-T-CATA--ATG-ATATTTGTTTGTTTACCTATA-T-AT------GAAT-GAAA-A--T-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---A-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-AA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGGACCCCAGGCTA
gi|15 : C-ATTT-GAT---CT-CATACAACC--AG-T-TACA--TTG-A-ATTTTATTTTTTA--TTTA-C-GT------GA-T-GAAA-A--G-A-TAAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--AGACC-----TAATGCAT----C-GACTGA---------------TT-GCCA-GATTTTT--C----A-GGTATC-GA-----A-A-TCG-GTAAATACCG--G--------GAACATC-ATAGGATCTCGTGCTAta
gi|16 : TTATTTA--TTTA-T-AT------GAAT-GGAA-A--G-A-ACAATAAATAA----G-GTACAAAAATGTACTTGTAAC-AAAGTAT--------------G----AT----T-GAATGA-AA--CCAATTAAACCT-A-CA-TATTTTT--A----A-TGAATC-GA-----A-G-TCG-GTAAATATCGC-G--------G--TATC-ATAAAACCCCGGGC
gi|18 : gtatgtatactcccgtA-T--ATCTAAA-A-ATACATCAAACGA-GATAACAA--AA-A-A------TTTT----CAC-A-GAACTTTGT-GG-CACCA---------TTA--GA--CCC-TACAC----C-TGTATTTT
gi|2 : TATAACTCCA-TCCTAT-ATATCCGCG----------GGTCCTATGGTACACGCGGT-AGTTGT-AGTTTTTTACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--GCCGATTT-ATTTTGTA-C--TGGAAAAAA---AATAACCGCACTTC-AAAGACTGTCCTCACAGAAAATAAAA-A-AAAATG--TT------AAGAA-TTTTGGAAGT--CG-CATGTCTTTCAATGTTATAGA-CGACTGAA--A--CC--C-GGA--ATTTTT-A-GGTTAACTATTCTCTTAATTCATCCAACACTT-T-----TTGGCCTCTTAATTTTGAA-TCTTTATTT-CTTA-GTACCAAGAAT-GAATTGCATT--TTAATAATTTTTT--CTGTTC-----A---TTA-T--AGTTTAGAA-ATACGTCGAACGA--AT----A--AA-ATT------TTTTTTTCCCC-A-G----TTGT-GGCCACCA---------TTAG-G---CCT-CACACA--ACGTATATCTTTATT-----AATACCGGCGCCCGGGTA-CCA------TAGGAACCT-CGTTTC--AATGTAAACA-CGATGGTA------TAGC-ATTTGGAT-G-CTGTAAACAA-C--AGTT-TATAG-TTG-ATATTGGATTATTTA--TTTA-T--T------G-AT-GAAAGA--GAA-ACAAT-AATAA----G-GCAC----------TT---AC-AAAGC-TT--A---C-----TG----AT----T-GACTGA-AA--CCAC----ACCTAA-CA-GATTTTTA-A----A-TAAATC-AA-----ATA-TCG-TAAAGTACC-C-GC-------G--TATC-ATAGGACCCCGGGCTA
gi|20 : A----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGAACC
gi|21 : --A----A-TGAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TAT
gi|22 : TACCGC-G--------G--TATC-ATAGAACCCCGGGCTA
gi|3 : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ACCGCAC-TC-AAAGCCTGTCTCAACAGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--CCGGA--ATTTTT-A-GGT--AC--TTTTCTTAATT--TCCATCACAT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATAA-TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GAT----A--AT-A-A------TTTTTTTTCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---AC-TGTATATTTATT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ATTT-GATGG-CTATAAACAACC--AG-T-TAGA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|4 : TA-CTCCAGTCCTATGATA-CTGCA----------AGTCTTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ATA--T-CT--GT--CA-CG---AGTGAACC-ATGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---ACT-ATTGCAC-TG-AAAGCCTGTCTCAACTGAAAAT--AA-AGAAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--AG-TC--C-GGC--ATTTTT-A-GAT--AA--TTTTCTAAATT--TCCGCCACAT-T-----TTTGTTTGTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATCA-TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GAT----A--AT-A--------TTTTTTTTTCC-A-C----TTGT-GG-CACCA---------TTAG-GA--TCC-TACAC---GC-TCTATATTTAGT-----AATACC-GC-----AGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ACTT-AAT-GGCTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTc
gi|5 : TATA-CTCCCGTTCTATGATA-CCGCGCCTAACCGCGGGTCCTAAGGTGC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTCAACC-GTGACATCT-ATTATAA-CGATTT-ATTT-GTAAC-ATGATAAAAA---ACT-AATGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AT-A-AAAATG--TT------CAGAA-TTCCAGAAGG--TG-CA-GTCTTATAAT-TTATA-A-CGACTGAA--A--ACTTC-GCA--TTTTTT-C-AGT--AT--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTTCATAATTTTGAATTCTTTATTT-CAAT-GTAC--AAAAT-G-GTTGCATT--TCAATCA-TATTT--CTG-TC-----A-T-TTA-A--AGCTAAG-A-ATATGTCAAACGA-GAT----AGCAA-A-A------TTTTT---CAC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAT---CC-TGTATTATTACA-----AATACC-AC-----GATA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGTGAGGGTG------TCAC-ATTT-G---------------CC--AA-T-TACA--TTG-A--------TATTTA--TTTA-C-AT------GAAT-AAAA-A--G-A-ACAATAAATAA----A-GTAC----------TT---AC-AAAGCATT--A---A-----TG----ATCGACT-GACTGA-AA--CCAA----ACCT-A-CA-AATTTTT--C----A-TG-ATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGC
gi|6 : AGTC-TATGATA-ACTCG----------GGTCCTATGTTAC-CGCGGT-AGTT-T-AGTTTC--ACA--G-CACCGT--CG-CC---GGTGAACCCGTGACATCT-ATCG--G-GTATTT-AATTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TG-AAAGCCTGTCTCA-CTGAAATT--A--------TT--TTTTTTTAAAGAA-TTTTGGAAAGCATG-C--GTCTTTCAAT-TTATA-AACGACTGAA--A--TC--C-AGC--ATTTTT-AAGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGATT-G-ATTGCATT--TTAATAT-TTTTT--CTG-TCA----A-A-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AT-A-A------TTTTTTCCCCCAA-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGAATATTTAGT-----AATA-C-GC-----GGTA-CCA------TGGGAACCTGCGTTTTCAAATGTAAAAAGCGATGGTA------TCGCAATTT-GATGG-CTGTAAACAACC--AG-T-TGTA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-AAGA-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----TA----T-ATCTGA-AA--CCAA----ACCT-A-C--TATATAT--A----G-T-AATC-CATATATA-ATTCG-GTATGTACCGC-
gi|7 : aATA-CTCCCGTCCTATGATA-C-GCG----------GGTCCTATGGT-------------T-T-AGTTTT--ACT--T-CA--GT--CG-CG---AGTGAACT-GTGACATTT-ATCG--G-C--TTCGATTTTTTA-C-TTGATAAAAA---A-C-ATTGCAC-TC-AACACATGTTTCAACTGAAAAT--AT-A-ACA-TG--TT------CAGA--TTTTGGAAGG--TA-CC-GTCTTTCAAT-TCATA-A-C-ACTGAA--A--TC--T-GGCCATTTTTT-C-AGT--AC--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTT-TTAATTTTGAATTCTTCATTT-CATT-GTAC--ATAAT-G-GTTGCATT--TTAATCA-TTTTT--CTG-TCATGTAA-T-TTG-TAAAGCTAGA-A-ATTCATC--------------------A-A------TTTTTT---TC-A-G----TTGT-GG-CACCAATAGACAGTTTAGAGAACTCC-TACAC---CC-T-TATTTTTTTTTTTACAATA-C-GT-----GATA-CCATAGGATTAGGAACCT-CATTTTCAAATGTAAACAGCAAGGGTA------TCAC-AACT-GAT-G-TTCGAAACAGCC--AG-T-TACA--CGG-A---------ATTTA--TTTA-C-AT------GAAT-GAAA-G--A-A-AAAAT--ATAA----G-GTA----------------AC--AAGC--T--A---T---------------------------A--CCAA----ACCG-A-CA-TATTTTC-------A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATCAATAGAA-CCTGGGCTA
gi|8 : -ATTT-GAT-C-CT-CATACAACCCCAG-TCTACGATTTG-ATATTTATTTATTTA--TTTA-CGAT------GAAT-GAAA-A--G-ACATAATAAATAACTTAG-GTAC----------TT---AC-AAAGCATTAGA---CCATAATG----AT----C-GACTG--------------ATTG-A-CA-GATTTTTTCA----G-GGTATC-TG-----A-A-TC--GTAAATACAGC-GTAGGCTACA--TCTC-AAAGGATCTCGTGCTA
gi|9 : aTTGAATTCTT-ATTT-CTTA-GTAC--AGAATTG-ATTGCATT--TTAAATA-TTTTTTTCTG-TC-----AATATTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AT-A-A------TTTTTTCCCCC-AAG----TTGTTGG-CACCA---------TTAG--A--CCT-AACAC---GC-TA-ATATTTAGT-----AATACC-GC-----GGTAACCT------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GATGG-CTGTAAACAACC--AGTT-TGTA--TTGAATATTTGATTA-TTA--TTTATT-AT-------AAT-TAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-TAAACA-T--A---C-----TG----AT----T-GACTGATAA--CCAA----GCCT-A-CATGATTTTT--A----A-TT-ATCAGA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGATCCCCGGGCatgagactaaatagtagttgccgaacttccgctacacattggagattacatgaaacggggcttagtagtctgcaatactgtagtaagatcccgaaacgtctttggtgcacacatcttggtagcagaaaaggtctttacagtgcgcaaaaacgtctggtgcgaaaggtacttggtgccgaaaagtc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CCTACACATTGGCAGATTAAAGAACGGGGTGTAGTCTACCAATACTGTAGTAGATCCCGAAACGGGTCTTGGTGCCCGAAACATCTTGGTACCGAAGACGTCTTTTACAGGTTGCAAAACGGTCTTGGTGGCCGAAAGGGTCTTGGTGCCGAAAAG
Unaligned ( gi|19 ): ATGAACGTAAAATATGTAGCGAAACATTGGCAGATTAAAGGGAAGGGGATGTAGTCTGCAATACTGTAGTAGAT
Alignments
lowQualScore : 2222222222 2222222 222222 11 11111 111111111 11111111 1111 111111111 11 1111 11111 22222 111111 111111 222 1111111111 111111111111 11111111
lowQualScore : 6 5 5 1111111111 5 5 5 5 5 66 66 5 777 66 5 888 5 5 66 5 5 5 55 1 888 5 5 5 66 0000000 0 66 888888 88 66 55 55 5 4 4 66 00 9999 777 555 66 66 66 5 22222 4 0 4 55 4 4 4 55 666 55 4 777777777 4 55 4 4 4 8888 55 66 44444444 888 4 4 2222 3 3 888888888 3 00 4 4444 4 2 1 2 55555 3 4 00000 4 222222 4 222222 1 3 3 555 5 88 7 3 88 3 4 1 44 3 3 999999 3 3 44 3 3 9999 3 3333333333 555 3 555555555555 6666 6666 3 3 44 6666 2 2 2 9999999 2 1 33 66666 2 2 2 2 22222222 66 2
lowQualScore : . . . .......... . . . . . .. .. . ... .. . ... . . .. . . . .. . ... . . . .. ....... . .. ...... .. .. .. .. . . . .. .. .... ... ... .. .. .. . ..... . . . .. . . . .. ... .. . ......... . .. . . . .... .. .. ........ ... . . .... . . ......... . .. . .... . . . . ..... . . ..... . ...... . ...... . . . ... . .. . . .. . . . .. . . ...... . . .. . . .... . .......... ... . ............ .... .... . . .. .... . . . ....... . . .. ..... . . . . ........ .. .
lowQualScore : 7 0 6 9999999999 2 0 0 0 0 99 99 0 666 99 0 888 0 0 99 0 0 0 44 4 888 0 0 0 44 6666666 1 99 888888 22 99 22 11 0 4 4 11 66 6666 111 222 11 11 11 0 55555 0 9 0 55 1 0 0 55 111 55 0 777777777 0 55 0 0 0 5555 55 44 00000000 777 0 0 5555 6 6 222222222 6 00 0 2222 0 3 0 6 66666 9 4 66666 4 888888 4 888888 1 6 6 555 1 66 3 6 66 6 4 5 66 3 3 666666 3 3 66 3 3 6666 1 5555555555 444 1 222222222222 5555 5555 1 1 22 1111 9 9 9 5555555 7 0 00 77777 7 7 7 5 33333333 33 9
consensus : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
Reference ( family-3798 ) : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|1 : TGG-GG-CACCAA--------TTAG-AAAGCTCATAAACAATGC-TATATTTTTATTC----AGTACC-GCACGA-GGT--CCG------TAGGAAACT-CAGTTTCAAA
gi|1 : cttcacaatacaaTAAC---G-GTAC----------TT---AC-AAA-CATTT-A---A-----TG----AT----TCGACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--ACGTGA-TTAAT---------A-A-TTGCATGTGTACCGCGG--------G--TATC-ATattcagttacatatgatatgtgttattattaacggtacttacaaacatttaatgattcgactgaaaccaaacctacagatttttacgtgattaataattgcatgtgtaccgcgggtatcattatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|10 : cttcacaatacaatggggcaccaattagaaagctcataaacaatgctatatttttattcagtaccgcacgaggtccgtaggaaactcagtttcaaaattcagttacatatgatatgtgttattatTCTTAAGTT-TTGATGTAC--A-AAT-G-GTTGCATTAATCAATG--TTGTT--TAA-TC-----A-T-TTACT--AAATACG-ATATACGTCGAACGAAGAT----A--AAGA-A------ATTTTTCACAC-A-GA---TTGT-GG--ACCA---------GTAG-GA--CCC--ACAC---GC-TGTATTTT--------------------------------------------CT-CGTTTTCAAATGTAAACCGCGAGGGTACATGTATCGG-ATTT-GAT-CTCTGTAA-CAACCG-AG-T-T-TA--TTG-ATATTTGGTTTTTTA--TATA-T-ATATATAAGAATAGAAT-A--G-A-ACAATAAATAA----GAGCCC----------TT---ACAAAAGCATT--A---CA----TG----AT----T-GACTGA-AATGCTAA----ACCT-A-CA-GATTTTT--A----ATTGAATC-GA-----A-A-TC--GTATGT-CAGC-G--------GC-TATC-ATAGAACCC--GGCTAtatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|11 : aATGA-A-CC-CG----------G-TCCTATGGTTC-CGCGGTCAATT-TGATTTTT--ACAATT-CA--GT--CA-CACGCAGTGAACC-GTGACTGCT-ATCG--G-CGATTT-ATTTTTTA-CCATGATGAAAA---CGT-ATTACAC-TTTAAAGCCTATCTCAGCTGAAAAT--CATA-AAAATAATTT------CAGA--TTGTGGAAGG--TAACA-GTCTTTCAAT-TTATA-A-TGACTGAAAGA--CT--G-GGC--ATTTTC-A--TT--AC---TTTCTTAAGT--CCCGTCATGTATATGAATTTGCTTCTTAATTCTGAATTA-TTATTTACT---GTAC--A-AAT-G-GTTGCATT--TTAATCA-TTTTT--CTG-CC-----
gi|12 : cTATA-CTCCAGTCCTATGATA-CC-------------------------C-TGCG-T-AGTT-T-AGTGTT--ACA--TTCA--GTTCCATCA---AG--GACC-G-GACATCTTATCG--G-GGATTT-AATTTGTA-C-ATGAGAAAAAAATAAT-ATTGCAC-TG-AAAG-CTGTCTCAACTGAAAAT----------ATT--TTTTTTTAAAGAATTTTTGGAAGA--T--CA-GTTCTTCAAT-TTATA-A-CG-CTGAA--GATCC--C-GGC--CTTTTTAA-GGT--AC--TTTTCTTAATT--TCCGTCAC
gi|13 : taTATA-T-CGACTGAA--A--CC--CCGGC--CTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATAT-TTTTT--CTG-TT-----AAT-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AA-A-AAAAAAAT-----CCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--C
gi|14 : aGTA------TAGC-ATTT-GAT-CTCTGTAAACAACC--AG-T-CATA--ATG-ATATTTGTTTGTTTACCTATA-T-AT------GAAT-GAAA-A--T-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---A-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-AA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGGACCCCAGGCTA
gi|15 : C-ATTT-GAT---CT-CATACAACC--AG-T-TACA--TTG-A-ATTTTATTTTTTA--TTTA-C-GT------GA-T-GAAA-A--G-A-TAAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--AGACC-----TAATGCAT----C-GACTGA---------------TT-GCCA-GATTTTT--C----A-GGTATC-GA-----A-A-TCG-GTAAATACCG--G--------GAACATC-ATAGGATCTCGTGCTAta
gi|16 : TTATTTA--TTTA-T-AT------GAAT-GGAA-A--G-A-ACAATAAATAA----G-GTACAAAAATGTACTTGTAAC-AAAGTAT--------------G----AT----T-GAATGA-AA--CCAATTAAACCT-A-CA-TATTTTT--A----A-TGAATC-GA-----A-G-TCG-GTAAATATCGC-G--------G--TATC-ATAAAACCCCGGGC
gi|18 : gtatgtatactcccgtA-T--ATCTAAA-A-ATACATCAAACGA-GATAACAA--AA-A-A------TTTT----CAC-A-GAACTTTGT-GG-CACCA---------TTA--GA--CCC-TACAC----C-TGTATTTT
gi|2 : TATAACTCCA-TCCTAT-ATATCCGCG----------GGTCCTATGGTACACGCGGT-AGTTGT-AGTTTTTTACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--GCCGATTT-ATTTTGTA-C--TGGAAAAAA---AATAACCGCACTTC-AAAGACTGTCCTCACAGAAAATAAAA-A-AAAATG--TT------AAGAA-TTTTGGAAGT--CG-CATGTCTTTCAATGTTATAGA-CGACTGAA--A--CC--C-GGA--ATTTTT-A-GGTTAACTATTCTCTTAATTCATCCAACACTT-T-----TTGGCCTCTTAATTTTGAA-TCTTTATTT-CTTA-GTACCAAGAAT-GAATTGCATT--TTAATAATTTTTT--CTGTTC-----A---TTA-T--AGTTTAGAA-ATACGTCGAACGA--AT----A--AA-ATT------TTTTTTTCCCC-A-G----TTGT-GGCCACCA---------TTAG-G---CCT-CACACA--ACGTATATCTTTATT-----AATACCGGCGCCCGGGTA-CCA------TAGGAACCT-CGTTTC--AATGTAAACA-CGATGGTA------TAGC-ATTTGGAT-G-CTGTAAACAA-C--AGTT-TATAG-TTG-ATATTGGATTATTTA--TTTA-T--T------G-AT-GAAAGA--GAA-ACAAT-AATAA----G-GCAC----------TT---AC-AAAGC-TT--A---C-----TG----AT----T-GACTGA-AA--CCAC----ACCTAA-CA-GATTTTTA-A----A-TAAATC-AA-----ATA-TCG-TAAAGTACC-C-GC-------G--TATC-ATAGGACCCCGGGCTA
gi|20 : A----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGAACC
gi|21 : --A----A-TGAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TAT
gi|22 : TACCGC-G--------G--TATC-ATAGAACCCCGGGCTA
gi|3 : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ACCGCAC-TC-AAAGCCTGTCTCAACAGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--CCGGA--ATTTTT-A-GGT--AC--TTTTCTTAATT--TCCATCACAT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATAA-TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GAT----A--AT-A-A------TTTTTTTTCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---AC-TGTATATTTATT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ATTT-GATGG-CTATAAACAACC--AG-T-TAGA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|4 : TA-CTCCAGTCCTATGATA-CTGCA----------AGTCTTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ATA--T-CT--GT--CA-CG---AGTGAACC-ATGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---ACT-ATTGCAC-TG-AAAGCCTGTCTCAACTGAAAAT--AA-AGAAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--AG-TC--C-GGC--ATTTTT-A-GAT--AA--TTTTCTAAATT--TCCGCCACAT-T-----TTTGTTTGTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATCA-TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GAT----A--AT-A--------TTTTTTTTTCC-A-C----TTGT-GG-CACCA---------TTAG-GA--TCC-TACAC---GC-TCTATATTTAGT-----AATACC-GC-----AGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ACTT-AAT-GGCTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTc
gi|5 : TATA-CTCCCGTTCTATGATA-CCGCGCCTAACCGCGGGTCCTAAGGTGC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTCAACC-GTGACATCT-ATTATAA-CGATTT-ATTT-GTAAC-ATGATAAAAA---ACT-AATGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AT-A-AAAATG--TT------CAGAA-TTCCAGAAGG--TG-CA-GTCTTATAAT-TTATA-A-CGACTGAA--A--ACTTC-GCA--TTTTTT-C-AGT--AT--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTTCATAATTTTGAATTCTTTATTT-CAAT-GTAC--AAAAT-G-GTTGCATT--TCAATCA-TATTT--CTG-TC-----A-T-TTA-A--AGCTAAG-A-ATATGTCAAACGA-GAT----AGCAA-A-A------TTTTT---CAC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAT---CC-TGTATTATTACA-----AATACC-AC-----GATA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGTGAGGGTG------TCAC-ATTT-G---------------CC--AA-T-TACA--TTG-A--------TATTTA--TTTA-C-AT------GAAT-AAAA-A--G-A-ACAATAAATAA----A-GTAC----------TT---AC-AAAGCATT--A---A-----TG----ATCGACT-GACTGA-AA--CCAA----ACCT-A-CA-AATTTTT--C----A-TG-ATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGC
gi|6 : AGTC-TATGATA-ACTCG----------GGTCCTATGTTAC-CGCGGT-AGTT-T-AGTTTC--ACA--G-CACCGT--CG-CC---GGTGAACCCGTGACATCT-ATCG--G-GTATTT-AATTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TG-AAAGCCTGTCTCA-CTGAAATT--A--------TT--TTTTTTTAAAGAA-TTTTGGAAAGCATG-C--GTCTTTCAAT-TTATA-AACGACTGAA--A--TC--C-AGC--ATTTTT-AAGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGATT-G-ATTGCATT--TTAATAT-TTTTT--CTG-TCA----A-A-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AT-A-A------TTTTTTCCCCCAA-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGAATATTTAGT-----AATA-C-GC-----GGTA-CCA------TGGGAACCTGCGTTTTCAAATGTAAAAAGCGATGGTA------TCGCAATTT-GATGG-CTGTAAACAACC--AG-T-TGTA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-AAGA-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----TA----T-ATCTGA-AA--CCAA----ACCT-A-C--TATATAT--A----G-T-AATC-CATATATA-ATTCG-GTATGTACCGC-
gi|7 : aATA-CTCCCGTCCTATGATA-C-GCG----------GGTCCTATGGT-------------T-T-AGTTTT--ACT--T-CA--GT--CG-CG---AGTGAACT-GTGACATTT-ATCG--G-C--TTCGATTTTTTA-C-TTGATAAAAA---A-C-ATTGCAC-TC-AACACATGTTTCAACTGAAAAT--AT-A-ACA-TG--TT------CAGA--TTTTGGAAGG--TA-CC-GTCTTTCAAT-TCATA-A-C-ACTGAA--A--TC--T-GGCCATTTTTT-C-AGT--AC--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTT-TTAATTTTGAATTCTTCATTT-CATT-GTAC--ATAAT-G-GTTGCATT--TTAATCA-TTTTT--CTG-TCATGTAA-T-TTG-TAAAGCTAGA-A-ATTCATC--------------------A-A------TTTTTT---TC-A-G----TTGT-GG-CACCAATAGACAGTTTAGAGAACTCC-TACAC---CC-T-TATTTTTTTTTTTACAATA-C-GT-----GATA-CCATAGGATTAGGAACCT-CATTTTCAAATGTAAACAGCAAGGGTA------TCAC-AACT-GAT-G-TTCGAAACAGCC--AG-T-TACA--CGG-A---------ATTTA--TTTA-C-AT------GAAT-GAAA-G--A-A-AAAAT--ATAA----G-GTA----------------AC--AAGC--T--A---T---------------------------A--CCAA----ACCG-A-CA-TATTTTC-------A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATCAATAGAA-CCTGGGCTA
gi|8 : -ATTT-GAT-C-CT-CATACAACCCCAG-TCTACGATTTG-ATATTTATTTATTTA--TTTA-CGAT------GAAT-GAAA-A--G-ACATAATAAATAACTTAG-GTAC----------TT---AC-AAAGCATTAGA---CCATAATG----AT----C-GACTG--------------ATTG-A-CA-GATTTTTTCA----G-GGTATC-TG-----A-A-TC--GTAAATACAGC-GTAGGCTACA--TCTC-AAAGGATCTCGTGCTA
gi|9 : aTTGAATTCTT-ATTT-CTTA-GTAC--AGAATTG-ATTGCATT--TTAAATA-TTTTTTTCTG-TC-----AATATTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AT-A-A------TTTTTTCCCCC-AAG----TTGTTGG-CACCA---------TTAG--A--CCT-AACAC---GC-TA-ATATTTAGT-----AATACC-GC-----GGTAACCT------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GATGG-CTGTAAACAACC--AGTT-TGTA--TTGAATATTTGATTA-TTA--TTTATT-AT-------AAT-TAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-TAAACA-T--A---C-----TG----AT----T-GACTGATAA--CCAA----GCCT-A-CATGATTTTT--A----A-TT-ATCAGA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGATCCCCGGGCatgagactaaatagtagttgccgaacttccgctacacattggagattacatgaaacggggcttagtagtctgcaatactgtagtaagatcccgaaacgtctttggtgcacacatcttggtagcagaaaaggtctttacagtgcgcaaaaacgtctggtgcgaaaggtacttggtgccgaaaagtc
blockSeqs : A T G CCTAACCGCG A A . G . TT . T ACC TC T . C T TA C G A A G AAT A A T G AAAAA . TTTTTA AT CA G AT G G A . AT TTC CAT AA TA TA CA . . A . CA G T A . AAT TT T ATGTAAT . AA A . . AACA GC A AAAAAAA TTC A A AACT T C ATAGACAGT A AC . AA G G T T TTTAC C G GCCCG A TAGGAT G . A A G CT G CC T C AT A T T CC T G . . G AG A C CTTA A AAAAATGTAC GTA A AGACCATAA ATGC CGAC . T TG TTAA A C T TCA T A AG TATAT T T . . TAGGCTAC AA A
blockSeqs : . . G . A . . . . . . . A . . . . . . . . . A A . A . . C AAAG . TTTTTA A . G A . . . . G CC C AA . . . . . . . . G . . . CA . . AATA . . . . . . . A TT TTT . . . . . . . . . G . G T T . C . . . . . . A . . GG G . T . G . T A . . . . . . . . . . . . . . AGACC . . . . . . . . . AA . A G . . . . . C C .
blockSeqs : . . G . A . . . . . . . T . . . . . . . . . A G . A . . C AAA . . A . G A . . . . . CC C A . . . . . . . . G . . . AT . . AAT . . . . . . . A A TTT . . . . . . . . . A . A C G . C . . . . . . A . . GG A . . . . . T A . . . . . . . . . . . . . . ACA . . . . . . . . . A . T A . . . . . . . .
blockSeqs : . . G . G . . . . . . . T . . . . . . . . . A G . C . . G ATA . . A . G A . . . . . C A A . . . . . . . . G . . . AA . . AAA . . . . . . . T A TCC . . . . . . . . . G . G A C . C . . . . . . A . . GG G . . . . . T A . . . . . . . . . . . . . . AA . . . . . . . . . A . A G . . . . . . . .
blockSeqs : . . T . A . . . . . . . T . . . . . . . . . A T . C . . C ATA . . A . G A . . . . . C A A . . . . . . . . A . . . CA . . AT . . . . . . . T A TCC . . . . . . . . . C . C A G . C . . . . . . C . . GG G . . . . . T A . . . . . . . . . . . . . . AC . . . . . . . . . C . A G . . . . . . . .
blockSeqs : . G . . . . . . . . . A . . . . . . . . . T G . A . . G A . . A . A C . . . . . C A A . . . . . . . . G . . . CA . . AT . . . . . . . A A CC . . . . . . . . . G . G T T . . . . . . . . C . . G C . . . . . T A . . . . . . . . . . . . . . AC . . . . . . . . . A . A A . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . T . . . . C . . . . . . . . . . . . C T C . . . . . . . . T . . . AT . . AT . . . . . . . T A T . . . . . . . . . C . G A G . . . . . . . . C . . G G . . . . . T T . . . . . . . . . . . . . . AC . . . . . . . . . A . A G . . . . . . . .
blockSeqs : . . . . T A C . . . . . . G . . . CA . . A . . . . . . . T A . . . . . . . . . . G . A T . . . . . . . . . C . . C . . . . . . . A . . . . . . . . . . . . . . AA . . . . . . . . . A . A A . . . . . . . .
blockSeqs : . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . AC . . . . . . . . . A . A A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AT . . . . . . . . . A . A A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . AC . . . . . . . . . C . A G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . A . T C . . . . . . . .
blockSeqs : . . . . A . . G . . . . . . . .
blockSeqs : . . . T . . . . . . .
blockSeqs : .
blockSeqCons : ** *** A* C* AA***** ** A* G* ** ***** ** CA* N* **** ********* ** G*** ***** ***** ****** ** ****** **** AC********** A****** G*
originalCons : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-C-ATGAGAAAAA---AAT-ATTGCAC-TC-AAAGCCTGTCTCAACTGAAAAT--AA-A-AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATNA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
finalCons : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CA-TGAGAAAAA---AAT-ATTGCAC-TC-AAAGCCTGTCTCAACTGAAAATAA-----AAAATG--TT------AAGAA-TTTTGGAAGG--TG-CA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTT-A-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATT--TTAATCA-TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACACG---C-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATTAC----------TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTTA------A-TGAATCG-A-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CCTACACATTGGCAGATTAAAGAACGGGGTGTAGTCTACCAATACTGTAGTAGATCCCGAAACGGGTCTTGGTGCCCGAAACATCTTGGTACCGAAGACGTCTTTTACAGGTTGCAAAACGGTCTTGGTGGCCGAAAGGGTCTTGGTGCCGAAAAG
Unaligned ( gi|19 ): ATGAACGTAAAATATGTAGCGAAACATTGGCAGATTAAAGGGAAGGGGATGTAGTCTGCAATACTGTAGTAGAT
Alignments
lowQualScore : 2222222222 1 1 3333333333333333333333333 11 11111 111 111111111 11111111 1111 111111111 11 1111 11111 22222 111111 111111 222 1111111111 111111111111 11111111
lowQualScore : 6 5 5 1111111111 5 5 5 5 5 66 66 5 777 66 5 888 5 5 66 5 5 0 0 1 5 5 888 0 1 1111111111111111111111111 5 66 55 55 5 4 4 66 00 9999 777 8 66 66 66 5 22222 4 0 4 55 4 4 4 1 111 55 4 777777777 4 55 4 4 4 8888 55 66 44444444 888 4 4 2222 3 3 888888888 3 00 4 4444 4 2 1 2 55555 3 4 00000 4 222222 4 222222 1 3 3 555 5 88 7 3 88 3 4 1 44 3 3 999999 3 3 44 3 3 9999 3 3333333333 555 3 555555555555 6666 6666 3 3 44 6666 2 2 2 9999999 2 1 33 66666 2 2 2 2 22222222 66 2
lowQualScore : . . . .......... . . . . . .. .. . ... .. . ... . . .. . . . . . . . ... . . ......................... . .. .. .. . . . .. .. .... ... . .. .. .. . ..... . . . .. . . . . ... .. . ......... . .. . . . .... .. .. ........ ... . . .... . . ......... . .. . .... . . . . ..... . . ..... . ...... . ...... . . . ... . .. . . .. . . . .. . . ...... . . .. . . .... . .......... ... . ............ .... .... . . .. .... . . . ....... . . .. ..... . . . . ........ .. .
lowQualScore : 7 0 6 9999999999 2 0 0 0 0 99 99 0 666 99 0 888 0 0 99 0 0 0 4 4 0 0 888 0 4 0000000000000000000000000 0 99 22 11 0 4 4 11 66 6666 111 9 11 11 11 0 55555 0 9 0 55 1 0 0 6 000 55 0 777777777 0 55 0 0 0 5555 55 44 00000000 777 0 0 5555 6 6 222222222 6 00 0 2222 0 3 0 6 66666 9 4 66666 4 888888 4 888888 1 6 6 555 1 66 3 6 66 6 4 5 66 3 3 666666 3 3 66 3 3 6666 1 5555555555 444 1 222222222222 5555 5555 1 1 22 1111 9 9 9 5555555 7 0 00 77777 7 7 7 5 33333333 33 9
consensus : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAAAAT-A---TTGCAC-TCAAAGCCTGTCTCAACTGAAAAT---A-AA--AAA-TG--TT------AAGAATTTT-GGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTTA-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATTTTAATCA---TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
Reference ( family-3798 ) : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAAAAT-A---TTGCAC-TCAAAGCCTGTCTCAACTGAAAAT---A-AA--AAA-TG--TT------AAGAATTTT-GGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--C-GGC--NTTTTTA-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATTTTAATCA---TTTTT--CTG-TC-----A-T-TTA-T--AGCTAAG-A-ATACGTCGAACGA-GAT----A--AN-A-A------TTTTTTCCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGTATNTTTANT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GAT-G-CTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|1 : TGG-GG-CACCAA--------TTAG-AAAGCTCATAAACAATGC-TATATTTTTATTC----AGTACC-GCACGA-GGT--CCG------TAGGAAACT-CAGTTTCAAA
gi|1 : cttcacaatacaaTAAC---G-GTAC----------TT---AC-AAA-CATTT-A---A-----TG----AT----TCGACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--ACGTGA-TTAAT---------A-A-TTGCATGTGTACCGCGG--------G--TATC-ATattcagttacatatgatatgtgttattattaacggtacttacaaacatttaatgattcgactgaaaccaaacctacagatttttacgtgattaataattgcatgtgtaccgcgggtatcattatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|10 : cttcacaatacaatggggcaccaattagaaagctcataaacaatgctatatttttattcagtaccgcacgaggtccgtaggaaactcagtttcaaaattcagttacatatgatatgtgttattatTCTTAAGTT-TTGATGTAC--A-AAT-G-GTTGCATT--AATCAATGTTGTT--TAA-TC-----A-T-TTACT--AAATACG-ATATACGTCGAACGAAGAT----A--AAGA-A------ATTTTTCACAC-A-GA---TTGT-GG--ACCA---------GTAG-GA--CCC--ACAC---GC-TGTATTTT--------------------------------------------CT-CGTTTTCAAATGTAAACCGCGAGGGTACATGTATCGG-ATTT-GAT-CTCTGTAA-CAACCG-AG-T-T-TA--TTG-ATATTTGGTTTTTTA--TATA-T-ATATATAAGAATAGAAT-A--G-A-ACAATAAATAA----GAGCCC----------TT---ACAAAAGCATT--A---CA----TG----AT----T-GACTGA-AATGCTAA----ACCT-A-CA-GATTTTT--A----ATTGAATC-GA-----A-A-TC--GTATGT-CAGC-G--------GC-TATC-ATAGAACCC--GGCTAtatacaatacatggtatatcattacatgtaaaacacctactcagccgattagcttagtgatttgttgtatgcgtgttcggtggatggagaggtcccacacaccaaaagttataacatacatgtgtacttcacacctcctgctccgaaaagctggataatttaaataacatatcgttccttgaatggagatctaactcagcaatcacacgtgtcggttctgacagttaagtagcagacataaatgtttaaatctttactgtataaccatattcagttataattattgtttaaccgcgagtttaaagtaactaatagaaggtagaccatgttcagtagacaattttcatcatttttaaattctttcaaaaaatgtatagagcgaaccgaatattactgacggaaccaatgtttacgcgggccgggaacgtttatgataggccggaacgatattataagtatctagctatccggccggacagcgcttaatcaacccgcgggaacgtaattattagtgcgaca
gi|11 : aATGA-A-CC-CG----------G-TCCTATGGTTC-CGCGGTCAATT-TGATTTTT--ACAATT-CA--GT--CA-CACGCAGTGAACC-GTGACTGCT-ATCG--G-CGATTT-ATTTTTTACCATGATGAAAACGT-A---TTACACTTTAAAGCCTATCTCAGCTGAAAATC--ATAA--AAA-TAATTT------CAG-ATTGT-GGAAGG--TAACA-GTCTTTCAAT-TTATA-A-TGACTGAAAGA--CT--G-GGC--ATTTTCA--TT--AC---TTTCTTAAGT--CCCGTCATGTATATGAATTTGCTTCTTAATTCTGAATTA-TTATTTACT---GTAC--A-AAT-G-GTTGCATTTTAATCA---TTTTT--CTG-CC-----
gi|12 : cTATA-CTCCAGTCCTATGATA-CC-------------------------C-TGCG-T-AGTT-T-AGTGTT--ACA--TTCA--GTTCCATCA---AG--GACC-G-GACATCTTATCG--G-GGATTT-AATTTGTA-CATGAGAAAAAAAT-AATATTGCAC-TGAAAGC-TGTCTCAACTGAAAAT---A---------TT--TTTTTTTAAAGAATTTTTGGAAGA--T--CA-GTTCTTCAAT-TTATA-A-CG-CTGAA--GATCC--C-GGC--CTTTTTAAGGT--AC--TTTTCTTAATT--TCCGTCAC
gi|13 : taTATA-T-CGACTGAA--A--CC--CCGGC--CTTTTTA-GGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATTTTAATAT---TTTTT--CTG-TT-----AAT-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AA-A-AAAAAAAT-----CCCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--C
gi|14 : aGTA------TAGC-ATTT-GAT-CTCTGTAAACAACC--AG-T-CATA--ATG-ATATTTGTTTGTTTACCTATA-T-AT------GAAT-GAAA-A--T-A-ACAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--A---A-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TGAATC-AA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGGACCCCAGGCTA
gi|15 : C-ATTT-GAT---CT-CATACAACC--AG-T-TACA--TTG-A-ATTTTATTTTTTA--TTTA-C-GT------GA-T-GAAA-A--G-A-TAAATAAATAA----G-GTAC----------TT---AC-AAAGCATT--AGACC-----TAATGCAT----C-GACTGA---------------TT-GCCA-GATTTTT--C----A-GGTATC-GA-----A-A-TCG-GTAAATACCG--G--------GAACATC-ATAGGATCTCGTGCTAta
gi|16 : TTATTTA--TTTA-T-AT------GAAT-GGAA-A--G-A-ACAATAAATAA----G-GTACAAAAATGTACTTGTAAC-AAAGTAT--------------G----AT----T-GAATGA-AA--CCAATTAAACCT-A-CA-TATTTTT--A----A-TGAATC-GA-----A-G-TCG-GTAAATATCGC-G--------G--TATC-ATAAAACCCCGGGC
gi|18 : gtatgtatactcccgtA-T--ATCTAAA-A-ATACATCAAACGA-GATAACAA--AA-A-A------TTTT----CAC-A-GAACTTTGT-GG-CACCA---------TTA--GA--CCC-TACAC----C-TGTATTTT
gi|2 : TATAACTCCA-TCCTAT-ATATCCGCG----------GGTCCTATGGTACACGCGGT-AGTTGT-AGTTTTTTACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--GCCGATTT-ATTTTGTA-C-TGGAAAAAAAATAA---CCGCACTTCAAAGACTGTCCTCACAGAAAATAAAA-AA--AAA-TG--TT------AAGAATTTT-GGAAGT--C-GCATGTCTTTCAATGTTATAGA-CGACTGAA--A--CC--C-GGA--ATTTTTA-GGTTAACTATTCTCTTAATTCATCCAACACTT-T-----TTGGCCTCTTAATTTTGAA-TCTTTATTT-CTTA-GTACCAAGAAT-GAATTGCATTTTAATAAT--TTTTT--CTGTTC-----A---TTA-T--AGTTTAGAA-ATACGTCGAACGA--AT----A--AA-ATT------TTTTTTTCCCC-A-G----TTGT-GGCCACCA---------TTAG-G---CCT-CACACA--ACGTATATCTTTATT-----AATACCGGCGCCCGGGTA-CCA------TAGGAACCT-CGTTTC--AATGTAAACA-CGATGGTA------TAGC-ATTTGGAT-G-CTGTAAACAA-C--AGTT-TATAG-TTG-ATATTGGATTATTTA--TTTA-T--T------G-AT-GAAAGA--GAA-ACAAT-AATAA----G-GCAC----------TT---AC-AAAGC-TT--A---C-----TG----AT----T-GACTGA-AA--CCAC----ACCTAA-CA-GATTTTTA-A----A-TAAATC-AA-----ATA-TCG-TAAAGTACC-C-GC-------G--TATC-ATAGGACCCCGGGCTA
gi|20 : A----ACCT-A-CA-GATTTTT--A----A-TGAATC-GA-----A-A-TCG-CCAAGTACCGC-G--------G--TATC-ATAGAACC
gi|21 : --A----A-TGAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TAT
gi|22 : TACCGC-G--------G--TATC-ATAGAACCCCGGGCTA
gi|3 : TATA-CTCCAGTCCTATGATA-CCGCG----------GGTCCTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CT--GT--CA-CG---AGTGAACC-GTGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAAAAT-A---CCGCAC-TCAAAGCCTGTCTCAACAGAAAAT---A-AA--AAAATG--TT------AAGAATTTT-GGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--A--CC--CCGGA--ATTTTTA-GGT--AC--TTTTCTTAATT--TCCATCACAT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATTTTAATAA---TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GAT----A--AT-A-A------TTTTTTTTCCC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---AC-TGTATATTTATT-----AATACC-GC-----GGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ATTT-GATGG-CTATAAACAACC--AG-T-TAGA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTA
gi|4 : TA-CTCCAGTCCTATGATA-CTGCA----------AGTCTTATGGTAC-CGCGGT-AGTT-T-AGTTTT--ATA--T-CT--GT--CA-CG---AGTGAACC-ATGACATCT-ATCG--G-CGATTT-ATTTTGTA-CATGAGAAAAAACT-A---TTGCAC-TGAAAGCCTGTCTCAACTGAAAAT---A-AAGAAAA-TG--TT------AAGAATTTT-GGAAGG--T-GCA-GTCTTTCAAT-TTATA-A-CGACTGAA--AG-TC--C-GGC--ATTTTTA-GAT--AA--TTTTCTAAATT--TCCGCCACAT-T-----TTTGTTTGTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGAAT-G-ATTGCATTTTAATCA---TTTTT--CTG-TC-----A-T-TTA-T--AGTTTAG-A-ATACGTCGAACGA-GAT----A--AT-A--------TTTTTTTTTCC-A-C----TTGT-GG-CACCA---------TTAG-GA--TCC-TACAC---GC-TCTATATTTAGT-----AATACC-GC-----AGTA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TAGC-ACTT-AAT-GGCTGTAAACAACC--AG-T-TATA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----AT----T-GACTGA-AA--CCAA----ACCT-A-CA-GATTTTT--A----A-TAAATC-AA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGCTc
gi|5 : TATA-CTCCCGTTCTATGATA-CCGCGCCTAACCGCGGGTCCTAAGGTGC-CGCGGT-AGTT-T-AGTTTT--ACA--T-CA--GT--CA-CG---AGTCAACC-GTGACATCT-ATTATAA-CGATTT-ATTT-GTAACATGATAAAAAACT-A---ATGCAC-TCAAAGCCTGTCTCAACTGAAAAT---ATAA--AAA-TG--TT------CAGAATTCC-AGAAGG--T-GCA-GTCTTATAAT-TTATA-A-CGACTGAA--A--ACTTC-GCA--TTTTTTC-AGT--AT--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTTCATAATTTTGAATTCTTTATTT-CAAT-GTAC--AAAAT-G-GTTGCATTTCAATCA---TATTT--CTG-TC-----A-T-TTA-A--AGCTAAG-A-ATATGTCAAACGA-GAT----AGCAA-A-A------TTTTT---CAC-A-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAT---CC-TGTATTATTACA-----AATACC-AC-----GATA-CCA------TAGGAACCT-CGTTTTCAAATGTAAACAGTGAGGGTG------TCAC-ATTT-G---------------CC--AA-T-TACA--TTG-A--------TATTTA--TTTA-C-AT------GAAT-AAAA-A--G-A-ACAATAAATAA----A-GTAC----------TT---AC-AAAGCATT--A---A-----TG----ATCGACT-GACTGA-AA--CCAA----ACCT-A-CA-AATTTTT--C----A-TG-ATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGGACCCCGGGC
gi|6 : AGTC-TATGATA-ACTCG----------GGTCCTATGTTAC-CGCGGT-AGTT-T-AGTTTC--ACA--G-CACCGT--CG-CC---GGTGAACCCGTGACATCT-ATCG--G-GTATTT-AATTTGTA-CATGAGAAAAAAAT-A---TTGCAC-TGAAAGCCTGTCTCA-CTGAAATT---A---------TT--TTTTTTTAAAGAATTTT-GGAAAGCAT-GC--GTCTTTCAAT-TTATA-AACGACTGAA--A--TC--C-AGC--ATTTTTAAGGT--AC--TTTTCTTAATT--TCCGTCACGT-T-----TTTGCTTCTTAATTTTGAATTCTTTATTT-CTTA-GTAC--AGATT-G-ATTGCATTTTAATAT---TTTTT--CTG-TCA----A-A-TTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AT-A-A------TTTTTTCCCCCAA-G----TTGT-GG-CACCA---------TTAG-GA--CCC-TACAC---GC-TGAATATTTAGT-----AATA-C-GC-----GGTA-CCA------TGGGAACCTGCGTTTTCAAATGTAAAAAGCGATGGTA------TCGCAATTT-GATGG-CTGTAAACAACC--AG-T-TGTA--TTG-ATATTTGATTATTTA--TTTA-T-AT------GAAT-GAAA-AAGA-A-ACAATAAATAA----G-GCAC----------TT---AC-AAAGCATT--A---C-----TG----TA----T-ATCTGA-AA--CCAA----ACCT-A-C--TATATAT--A----G-T-AATC-CATATATA-ATTCG-GTATGTACCGC-
gi|7 : aATA-CTCCCGTCCTATGATA-C-GCG----------GGTCCTATGGT-------------T-T-AGTTTT--ACT--T-CA--GT--CG-CG---AGTGAACT-GTGACATTT-ATCG--G-C--TTCGATTTTTTA-CTTGATAAAAAA-C-A---TTGCAC-TCAACACATGTTTCAACTGAAAAT---A-TA--ACA-TG--TT------CAGA-TTTT-GGAAGG--T-ACC-GTCTTTCAAT-TCATA-A-C-ACTGAA--A--TC--T-GGCCATTTTTTC-AGT--AC--TTTTCTTAATT--CCCGTCATGT-T-----TTTGCTT-TTAATTTTGAATTCTTCATTT-CATT-GTAC--ATAAT-G-GTTGCATTTTAATCA---TTTTT--CTG-TCATGTAA-T-TTG-TAAAGCTAGA-A-ATTCATC--------------------A-A------TTTTTT---TC-A-G----TTGT-GG-CACCAATAGACAGTTTAGAGAACTCC-TACAC---CC-T-TATTTTTTTTTTTACAATA-C-GT-----GATA-CCATAGGATTAGGAACCT-CATTTTCAAATGTAAACAGCAAGGGTA------TCAC-AACT-GAT-G-TTCGAAACAGCC--AG-T-TACA--CGG-A---------ATTTA--TTTA-C-AT------GAAT-GAAA-G--A-A-AAAAT--ATAA----G-GTA----------------AC--AAGC--T--A---T---------------------------A--CCAA----ACCG-A-CA-TATTTTC-------A-TGAATC-GA-----A-A-TCG-GTAAGTACCGC-G--------G--TATCAATAGAA-CCTGGGCTA
gi|8 : -ATTT-GAT-C-CT-CATACAACCCCAG-TCTACGATTTG-ATATTTATTTATTTA--TTTA-CGAT------GAAT-GAAA-A--G-ACATAATAAATAACTTAG-GTAC----------TT---AC-AAAGCATTAGA---CCATAATG----AT----C-GACTG--------------ATTG-A-CA-GATTTTTTCA----G-GGTATC-TG-----A-A-TC--GTAAATACAGC-GTAGGCTACA--TCTC-AAAGGATCTCGTGCTA
gi|9 : aTTGAATTCTT-ATTT-CTTA-GTAC--AGAATTG-ATTGCATTTTAAATA---TTTTTTTCTG-TC-----AATATTA-T--AGCTAAG-A-ATACGTCGAAAGA-GAT----A--AT-A-A------TTTTTTCCCCC-AAG----TTGTTGG-CACCA---------TTAG--A--CCT-AACAC---GC-TA-ATATTTAGT-----AATACC-GC-----GGTAACCT------TAGGAACCT-CGTTTTCAAATGTAAACAGCGATGGTA------TCGC-ATTT-GATGG-CTGTAAACAACC--AGTT-TGTA--TTGAATATTTGATTA-TTA--TTTATT-AT-------AAT-TAAA-A--G-A-ACAATAAATAA----G-GCAC----------TT---AC-TAAACA-T--A---C-----TG----AT----T-GACTGATAA--CCAA----GCCT-A-CATGATTTTT--A----A-TT-ATCAGA-----A-A-TCG-GTAAGTACCGC-G--------G--TATC-ATAGATCCCCGGGCatgagactaaatagtagttgccgaacttccgctacacattggagattacatgaaacggggcttagtagtctgcaatactgtagtaagatcccgaaacgtctttggtgcacacatcttggtagcagaaaaggtctttacagtgcgcaaaaacgtctggtgcgaaaggtacttggtgccgaaaagtc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CCTACACATTGGCAGATTAAAGAACGGGGTGTAGTCTACCAATACTGTAGTAGATCCCGAAACGGGTCTTGGTGCCCGAAACATCTTGGTACCGAAGACGTCTTTTACAGGTTGCAAAACGGTCTTGGTGGCCGAAAGGGTCTTGGTGCCGAAAAG
Unaligned ( gi|19 ): ATGAACGTAAAATATGTAGCGAAACATTGGCAGATTAAAGGGAAGGGGATGTAGTCTGCAATACTGTAGTAGAT