lowQualScore : 111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333 7777777777777777777777777777777777 111111 1 333333333 2222 1111 222 2222222222222 2222222222222222222222222222222222222222222222222222222222222 1 2222222222222 888888888888888888888888888888 11 1111 1
lowQualScore : 6 777777777777777777777777777777777 4 1 0000000000000000000000000000000000 0 6 888888 66 0 2 6 2 0 0 5 5 9999 1 77 999999999 6666 5555 4 5 777 3 7777777777777 2 888 0 8888888888888888888888888888888888888888888888888888888888888 8 3 3 666 3 2222222222222 99999 88 0 7777 444444444444444444444444444444 4 4 4 4 9999999999 4 55 4 0 4 3 00 777 8888 3
lowQualScore : . ................................. . . .................................. . . ...... .. . . . . . . . . .... . .. ......... .... .... . . ... . ............. . ... . ............................................................. . . . ... . ............. ..... .. . .... .............................. . . . . .......... . .. . . . . .. ... .... .
lowQualScore : 0 000000000000000000000000000000000 0 0 8888888888888888888888888888888888 7 7 333333 33 1 1 0 3 7 4 7 7 4444 1 99 777777777 6666 9999 0 0 555 2 6666666666666 2 888 1 6666666666666666666666666666666666666666666666666666666666666 4 6 6 444 6 0000000000000 11111 66 4 7777 333333333333333333333333333333 0 0 0 9 8888888888 0 55 7 9 5 1 99 000 6666 7
consensus : NNCAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAATC-AGCCGTCCCCNACCAGACGACC-------TGCCA-TACAAGCG------CCTGT-GCAAATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGAG-C-G--TCGG--T-A-AA----CAACACTCA-ACACAA--TTCCAATCACA-GAA-GTTGTCTTC-----ATT---C-ACAT---CTAACT-C-TTGAA-TTTC---TTTCA-GT-AA-T--G-TACATTTAACTTTGCCACAAATCC-C-ATTCACAAGCCA-ATA-ATTTT---C-TATTTC--------TTA-TACAT-----GTG--TTTCGTG----TCATGGCGG--CA----G-CCATT---GTACTGGAC-TG-CA-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGNTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( gi|1 ) : ACCAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACCCTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGT-CCAGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGAG-C-G--TCAG--TTACAA----CAACACTTG-GCACAA--TGCCAGTCACA-GAAAGTTGTCTTC-----ATT---C-ACAT---CTAACT-C-TTGAAGTTTC---TTTCA-GTAAA-A--G-TACATTTAACTTTGCCACAAACACACAATTCACAATCCA-ATA-ATTTT---C-TATTTC--------TTA-CACAT-----GTG--TTTCGTG----TCTTGCTGG--CA----T-CCATTA-TGTACGGGAC-TG-CA-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAATC-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGC-GCAAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGAG-A-G--ATGG--TAACAA----CAACACTCA-ACACAA--TTTCAATCACA-GAA---TA---TC-----ATTTAAC-ACAT---CTAACT-C--------TTC---TTTTA-ATAAC-T--G-TACTTTCAACTTTGCCACAAATTC---ATTCACAAGCCA-ATC-ATTTT---C-TATTTC--------TTA-TGCAT-----GTG--TTTTGTG----TCATGGAAG--AA----G-CC---A-TG-ACTGGAC-TG-CA-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---
gi|3 : gacaAGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG--T---GA----CAATACTCA-ACACAAGATTCAAGTGACAAGAATGTCGTCTTCAGATTATT---C-ACA------AGCC-A---GAAATTTTCTATTTCAGGTGAATA--GATGCATTT
gi|5 : gcaacaagacACAAGATGGCC-------TACCA-TGCA-------------GT---AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGAG-C-C--TTGG--T---AG----CAACATT-------------CCAATCACA-GAG---TGTCGTC-----AT--------AT---CTAACT-C--------TTC---TTTCA-ATAAC-T--G-TATATTTAACTTTTTCACAAAT---CTATTCACAA-CCA-AGA-ATTTT---C-CATTTC--------CTA-TACAT-----GCG--TTTGATG----ACGTGGAGG--CA----G-CCAT-----TACTGAAG-TGACA-CCATCT-G-ATTT-C-TGTGTATTC--TTcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|6 : -------TACAA-TATAATTT------ACTGA-GTAAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGCG-CAG--GCTGCATTAGAAGCATCAAAATTGG-ACATAA--TTCCAATCACA-GAA---TGTTATC-----AT------ATAT---ATAACT-------------------------AA-T--G-TATATTTAACTTTGCCTC--ACATTC-ATTAACAAGGTA-ATA-ATTTT---C-CATTTCATGTACTGTTA-TACAC-----ATG--ATTTATG----aag
gi|11 : CAAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGAG-C-G--TCAG--T---AA----CAACACTCA-ACACAA--TTCTAATCATA-GAAAGTCGTCTTC-----ATT---C-ATAT---C-AACTACATTGAACTTTaactgacaccagttgatttct
gi|4 : gCAAATAC-TGCA-GC--CCACTGC--TTTGGATC-CCATTTC-GACTAATGAG-C-GGGTCA---TTA-AC----CAACACTCAAGCACAA--TTCTAATCATA-GAAAGTGTTCTTC-----ATT---CTATATCAACTAACA-T-TTGAA---TC---TTTT--GT-----------CA-----------CACAAGT---CATTTCACAAGCCATATA---TTT---CGTAATTC--------TTA-TGCAT-----GTGA-ATTCGTG----TC-CGAT-G--CA----G-CCATT----------AC-TG--A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtgtcacaaatccat
gi|7 : TTTGGATTCCCATTCCCGAC-GACGAG-C-A--TCAG--TAGAAA----CACCACTCA-ACATAA--TTCCAACTACA-GAA---TGTCGTC-----AT--------AT---CTAATT-C-TT-------C---TCTCA------------TACAGT-------GCCACGAATCCA---TTCACACGCGA-ATA-ATTTT---C-CATTTC--------------CAG-----GTG--TTTTGTG----ACATGCCGGTGCA----G-CCATT----T-CTGAACATT-CA-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCG
gi|10 : ACTCA-ACACAA--TCTCAATGACA-GAATGTTGTCTTCATCT-ATT---C-ACA
gi|8 : tAT---CTAACT---------TTTC---TTTCA----AA-ATTG-TACATTTAACTTTGCCACATATCCA---TCCAAAAACCA-ATA-ATTTC---C-TATTTA--------TTA-TACATTGTATGTG--TTTCGTG----TCATGGCGG--CT----G-CCATTA-----CTGAAC-TG-CA-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGGagacagtaattttctatttcttgtatatatgcatttcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|10 : tATTCACAAGACA-GTA-ATTTT---C-TATTTC--------TTG-TATAT-----ATGCATTTCGTG----TCATGGCAA--CG----T-GCATTG-----CTGGAC-TC-CA-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTT
gi|3 : tactcaacacaatctcaatgacagaatgttgtcttcatctATTCACAAGCCA-GAA-ATTTT---C-TATTTCAGG-----TGAATAGAT-----GCA--TTTCGTG----TCAT--TGG--CAACAAT-GCATT---GGCTGGGAC-TG-CAGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGG
gi|13 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattCA-ATACATTTTATTT-TTTTTC--------TTA-TACAT-----ATC--TTTCACG----TCATGGCGG--TA----G-CCATTA-T-T---GGAC-AG-CA-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCtt
gi|12 : CA-ATA-ATTTT---C-CATTTC--------TTA-TATAA-----GTG--TTTT-TGAGGTTCCTGC-AG--CA--------ATTGCTGAACA--AC----CA-CTATGT-A-A-TT-C-TTTGTA--A--TTATA--------TTG-CGTTA-TC-AGGTTCAT---TGAGGTCATGTGCAAAGAa
gi|9 : -ATA-ATTTT---C-TATTTC--------TT-----TT-----GTC--TGTAGTG----TAATGGCGG--CA----GACAATTT-CGTA---GAC-TG-CA-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTATcata
gi|18 : catatctataaacaacttcttcaatgacaatatttaaaactttgcatccattctagccTTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAc
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATG-GTCAAGAAAtaa
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 22222 2 2222 444444444444444444444444444 111111 444444 1111 333 22222 111111 55555555555555555555555555 2222 2222222222
lowQualScore : 88 88888 0 0000 1 444444444444444444444444444 4 5 5 333333 0 5 5 7777 1 333333 0000 4 66 4 4 111 4 1 00000 777777 0 55 777 66 22222222222222222222222222 0 66 0 9999 8 3 3 555 3 888888 3 88888 3 0 3 3 2 99 3 8888888888 44 3 6 3 3 2 44444 3 3 55 0 1 2 5 666
lowQualScore : .. ..... . .... . ........................... . . . ...... . . . .... . ...... .... . .. . . ... . . ..... ...... . .. ... .. .......................... . .. . .... . . . ... . ...... . ..... . . . . . .. . .......... .. . . . . . ..... . . .. . . . . ...
lowQualScore : 55 55555 0 7777 0 888888888888888888888888888 0 7 7 000000 9 0 0 0000 1 888888 6666 4 11 4 4 777 4 9 66666 999999 9 55 888 11 77777777777777777777777777 8 99 2 1111 0 3 3 888 3 999999 3 33333 3 2 3 3 5 22 3 4444444444 22 3 7 3 3 3 55555 3 6 00 7 0 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAA------GCGCCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGGT-A----AA----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACA--T---C--TAACT-C-TT-AA--TTCTTTCAATA-A-T-GTACATTTAA--CTTTGCCACAAATCC-CA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TACAT-----GCG-TTTCGTGT-CAT-GGCG--GCAGC-CA---TT--GTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCCNACCAGACGACC-------TGCCA-TACAA------GCGCCTGTGC-AAATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGGT-A----AA----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACA--T---C--TAACT-C-TTGAA-TTTCTTTCAGTA-A-T-GTACATTTAA--CTTTGCCACAAATCC-CA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TACAT-----GTG-TTTCGTGT-CAT-GGCG--GCAGC-CA---TT--GTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGNTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAA------GTGCCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTTAC---AA----CAACACTTGG-CACA--ATGCCAGTCAC-AG-AAAGTTG-TCTTC-----ATT---C-ACA--T---C--TAACT-C-TTGAAGTTTCTTTCAGTA-A-AAGTACATTTAA--CTTTGCCACAAACACACAATTCACAATCCA-ATA-ATTTT---C-TATTTC---T--TA-CACAT-----GTG-TTTCGTGT-CTT-GCTG--GCATC-CA---TTATGTACGGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGTTG-TCTTCATCT-ATT---C-ACAAGA---CAGTAA-T-T-TTCTA-TTTCTT---GTATA-T-ATGCATTT
gi|10 : tC-TA-TTCACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TATAT-----GCA-TTTCGTGT-CAT-GGCA--ACGTG-CA---TT--G--CTGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcatGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAGT------AA----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-GTCG-TCTTC-----ATT---C-ATA--T---C---AACTACATTGAA-CTTTTGTCA
gi|12 : CA-ATA-ATTTT---C-CATTTC---T--TA-TATAA-----GTG-TTTT-TGA-GGT-TCCT--GCAGC-AA---TT--G--CTGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTA------------ATTATATTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGAcaaatccat
gi|13 : CA-ATACATTTTATTT-TTTTTC---T--TA-TACAT-----ATC-TTTCACGT-CAT-GGCG--GTAGC-CA---T----TATTGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGGT-AAC--AA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA---TA----TC-----ATTTAAC-ACA--T---C--TAACT-C--------TTCTTTTAATA-ACT-GTACTTTCAA--CTTTGCCACAAAT-T-CA-TTCACAAGCCA-ATC-ATTTT---C-TATTTC---T--TA-TGCAT-----GTG-TTTTGTGT-CAT-GGAA--GAAGC-CA----T--G-ACTGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCT------GCACCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGGT------GA----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATGTCG-TCTTCAGATTATT---C-ACA--
gi|3 : A-TTCACAAGCCA-GAA-ATTTT---C-TATTTCAGGT--GAATAGAT-----GCA-TTTCGTGT-CATTGGCA--ACAATGCA---TT--G-GCTGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCATT-A----AC----CAACACTCAAGCACA--ATTCTAATCAT-AG-AA-AGTGTTCTTC-----ATT---CTATA--TCAAC--TAACA-T-TTGAA---TCTTT--------T-GT-CA-------------CACAAGT---CATTTCACAAGCCATATA---TTT---CGTAATTC---T--TA-TGCAT-----GTGAATTCGTGT-C-----CGATGCAGC-CA---T----TACTG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGGT------AG----CAAC-------------ATTCCAATCAC-AG-AG---TG-TCGTC-----AT--------A--T---C--TAACT-C--------TTCTTTCAATA-ACT-GTATATTTAA--CTTTTTCACAAAT-C-TA-TTCACAA-CCA-AGA-ATTTT---C-CATTTC---C--TA-TACAT-----GCG-TTTGATGA-CGT-GGAG--GCAGC-CA---T----TACTGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTGC-ATTAGAAGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA---TG-TTATC-----AT------ATA--T---A--TAAC--------------------TA-A-T-GTATATTTAA--CTTTGCCTCACAT-T-CA-TTAACAAGGTA-ATA-ATTTT---C-CATTTC---A--TG-TAC--------TG-TT--ATACACAT-G------------A---TT---TA-TGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAGT-AGA--AA----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA---TG-TCGTC-----AT--------A--T---C--TAATT-C-TT-------CTCTCA---------TACAGT---------GCCACGAATCC--A-TTCACACGCGA-ATA-ATTTT---C-CATTTC-----------CAG-----GTG-TTTTGTGA-CAT-GCCGGTGCAGC-CA---TT---T-CTGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : A--T---C--TAACT---------TTTCTTTCAAAA-T-T-GTACATTTAA--CTTTGCCACATATCC--A-TCCAAAAACCA-ATA-ATTTC---C-TATTTA---T--TA-TACATTGTATGTG-TTTCGTGT-CAT-GGCG--GCTGC-CA---TT----ACTGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : tAA-CTTCTT-CAATG-A-C-A-ATATTTAAAACTTTGC-----ATCC--A-TTCT--AGCCA--TA-ATTTT---C-TATTTC---T--T--T---T-----GTC-TGTAGTGT-AAT-GGCG--GCAGA-CAATTTC--GTA---G-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 11 1 1 1111 3333333 3333333333 111111 333333333333333 222 22222 111111 7777777777777777777777777 22222 333333
lowQualScore : 88 88 5 5 7777 2222222 0 8 9999999999 6 5 5 333333 0 5 5 7777 1 5 888888888888888 4 66 4 8 777 4 4 00000 555555 1 55 777 55 777 9999999999999999999999999 0 66 4 99999 4 3 3 555 3 888888 3 999999999 0 3 0 99 3 555 444444 44 3 6 3 3 2 44444 3 3 55 1 0 2 2 5 666
lowQualScore : .. .. . . .... ....... . . .......... . . . ...... . . . .... . . ............... . .. . . ... . . ..... ...... . .. ... .. ... ......................... . .. . ..... . . . ... . ...... . ......... . . . .. . ... ...... .. . . . . . ..... . . .. . . . . . ...
lowQualScore : 55 55 0 0 7777 5555555 2 8 2222222222 4 7 7 000000 9 0 0 0000 1 0 111111111111111 4 11 4 9 222 4 7 66666 888888 4 00 000 55 000 3333333333333333333333333 8 11 4 44444 0 3 3 888 3 999999 3 666666666 2 3 4 22 3 888 111111 22 3 7 3 3 3 55555 3 6 00 4 7 9 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACA--T---C--TA---ACTCT-T------TCTTTCAAT-A-A-TGTACATTTAA--C-TTTGCCACAAAT-C-CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TACAT-----GCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACA--T---C--TA---ACTCT-TAA---TTCTTTCAAT-A-A-TGTACATTTAA--C-TTTGCCACAAAT-C-CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TACAT-----GCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTT--AC---A--A----CAACACTTGG-CACA--ATGCCAGTCAC-AGAAA-GTTG-TCTTC-----ATT---C-ACA--T---C--TA---ACTCT-TGAAGTTTCTTTCAGTAA-A-AGTACATTTAA--C-TTTGCCACAAACACACAA-TTCACAATCCA-ATA-ATTTT---C-TATTTC---T--TA-CACAT-----GTG-TTTCGTGTCTT-GCTG--GCATC-CA---TTATGTACGGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGTTG-TCTTCATCT-ATT---C-ACAAGA---CAGTA---ATTTTCTAT---TTCTT---GT-ATA-TATGCATTT
gi|10 : t-CTA-TTCACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TATAT-----GCA-TTTCGTGTCAT-GGCA--ACGTG-CA---T--TG--CTGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcatGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAG-T-------A--A----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-GTCG-TCTTC-----ATT---C-ATA--T---C---A---AC---------------------------TACATTGAA--CTTTTGTCACAAAT-C-C
gi|12 : CA-ATA-ATTTT---C-CATTTC---T--TA-TATAA-----GTG-TTTT-TGAGGT-TCCT--GCAGC-AA---T--TG--CTGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTAATT--ATA----------TTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGAat
gi|13 : CA-ATACATTTTATTT-TTTTTC---T--TA-TACAT-----ATC-TTTCACGTCAT-GGCG--GTAGC-CA---T----TATTGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGG-T--A----ACAA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA---TA-TC--------ATTTAAC-ACA--T---C--TA---ACTCT-T-------CTTTTAAT-A-ACTGTACTTTCAA--C-TTTGCCACAAAT-T-C-A-TTCACAAGCCA-ATC-ATTTT---C-TATTTC---T--TA-TGCAT-----GTG-TTTTGTGTCAT-GGAA--GAAGC-CA---T---G-ACTGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG-T-------G--A----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATGTCG-TCTTCAGATTATT---C-ACA--
gi|3 : A-TTCACAAGCCA-GAA-ATTTT---C-TATTTCAGGT--GAATAGAT-----GCA-TTTCGTGTCATTGGCA--ACAATGCA---T--TG-GCTGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCAT-T--A----A--C----CAACACTCAAGCACA--ATTCTAATCAT-AG-AA-AGTGTTCTTC-----ATT---CTATA--TCAAC--TA---ACATT-TGA---ATCTTT---------TGT-CA--------------CACAAGT----CATTTCACAAGCCATATA---TTT---CGTAATTC---T--TA-TGCAT-----GTGAATTCGTGTC-----CGATGCAGC-CA---T----TACTG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGG-T--A----G--------------CAA-CA-----TTCCAATCAC-AG-AG---TG-TCGTC-----AT--------A--T---C--TA---ACTCT-T-------CTTTCAAT-A-ACTGTATATTTAA--C-TTTTTCACAAAT-C-T-A-TTCACAA-CCA-AGA-ATTTT---C-CATTTC---C--TA-TACAT-----GCG-TTTGATGACGT-GGAG--GCAGC-CA---T----TACTGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTG-C--ATTAGA--AGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA---TG-TTATC-----AT------ATA--T---A--TA---AC-------------------T-A-A-TGTATATTTAA--C-TTTGCCTCACAT---TCA-TTAACAAGGTA-ATA-ATTTT---C-CATTTC---A--TG-TAC----------------TGTTAT-------ACA---CA---TGATTTA-TGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAG-TAGA----A--A----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA---TG-TCGTC-----AT--------A--T---C--TA---ATTC--------TTCTCTCA---------TACA----------GTGCCACGAAT---CCA-TTCACACGCGA-ATA-ATTTT---C-CATTTC-----------CAG-----GTG-TTTTGTGACAT-GCCGGTGCAGC-CA---T--T-T-CTGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : A--T---C--TA---ACTTT-T-------CTTTCAAA-A-T-TGTACATTTAA--C-TTTGCCACATAT-C-C-A-TCCAAAAACCA-ATA-ATTTC---C-TATTTA---T--TA-TACATTGTATGTG-TTTCGTGTCAT-GGCG--GCTGC-CA---T--T--ACTGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : t---C-ATA--T---C--TATAAAC-----AA---CTTCTTCAAT-G-A-CA-ATATTTAAAAC-TTTGC-----AT-C-C-A-TTCT--AGCCA--TA-ATTTT---C-TATTTC---T--TT-TGTCT-----G-----TAGTGTAAT-GGCG--GCAGA-CAATTT--CGTA---G-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 11 1 1 1111 3333333 3333333333 111111 333333333333333 222 22222 111111 7777777777777777777777777 111 22222 333333
lowQualScore : 88 88 5 5 7777 2222222 0 8 9999999999 6 5 5 333333 0 5 5 7777 1 5 888888888888888 4 66 4 8 777 4 4 00000 555555 1 1 777 1111111111111111111111111 333 4 4 55555 3 3 555 3 888888 3 999999999 0 3 0 99 3 555 444444 44 3 6 3 3 2 44444 3 3 55 1 0 2 2 5 666
lowQualScore : .. .. . . .... ....... . . .......... . . . ...... . . . .... . . ............... . .. . . ... . . ..... ...... . . ... ......................... ... . . ..... . . ... . ...... . ......... . . . .. . ... ...... .. . . . . . ..... . . .. . . . . . ...
lowQualScore : 55 55 0 0 7777 5555555 2 8 2222222222 4 7 7 000000 9 0 0 0000 1 0 111111111111111 4 11 4 9 222 4 7 66666 888888 4 9 888 2222222222222222222222222 999 4 4 99999 3 3 888 3 999999 3 666666666 2 3 4 22 3 888 111111 22 3 7 3 3 3 55555 3 6 00 4 7 9 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACTC------TTTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT-C-C-ATTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TACAT-----GCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACTC------TTTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT-C-CCATTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TACAT-----GCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTT--AC---A--A----CAACACTTGG-CACA--ATGCCAGTCAC-AGAAA-GTTG-TCTTC-----ATT---C-ACATCTA---ACTCTTGAAGTTTCTTTCAGTAAA-AGTACATTTAA---C-TTTGCCACA-AACACACAATTCACAATCCA-ATA-ATTTT---C-TATTTC---T--TA-CACAT-----GTG-TTTCGTGTCTT-GCTG--GCATC-CA---TTATGTACGGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGTTG-TCTTCATCT-ATT---C-ACA
gi|10 : t-CTATTCACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TATAT-----GCA-TTTCGTGTCAT-GGCA--ACGTG-CA---T--TG--CTGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTagacagtaattttctatttcttgtatatatgcatttcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcatGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAG-T-------A--A----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-GTCG-TCTTC-----ATT---C-ATATC-A---AC-------------------------TACATTGAA---CTTTTGTCACA-AAT-C-C
gi|12 : CA-ATA-ATTTT---C-CATTTC---T--TA-TATAA-----GTG-TTTT-TGAGGT-TCCT--GCAGC-AA---T--TG--CTGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTAATT--ATA----------TTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGAat
gi|13 : CA-ATACATTTTATTT-TTTTTC---T--TA-TACAT-----ATC-TTTCACGTCAT-GGCG--GTAGC-CA---T----TATTGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGG-T--A----ACAA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA---TA-TC--------ATTTAAC-ACATCTA---ACTC------TT-CTTTTAAT-AACTGTACTTTCAA---C-TTTGCCACA-AAT-T-C-ATTCACAAGCCA-ATC-ATTTT---C-TATTTC---T--TA-TGCAT-----GTG-TTTTGTGTCAT-GGAA--GAAGC-CA---T---G-ACTGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG-T-------G--A----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATGTCG-TCTTCAGATTATT---C-ACA
gi|3 : ATTCACAAGCCA-GAA-ATTTT---C-TATTTCAGGT--GAATAGAT-----GCA-TTTCGTGTCATTGGCA--ACAATGCA---T--TG-GCTGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCAT-T--A----A--C----CAACACTCAAGCACA--ATTCTAATCAT-AG-AA-AGTGTTCTTC-----ATT---CTATATC-A---ACT---------------A---------ACATTTGAATCT-TTTGTCACACAAG-T-CATTTCACAAGCCATATA---TTT---CGTAATTC---T--TA-TGCAT-----GTGAATTCGTGTC-----CGATGCAGC-CA---T----TACTG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGG-T--A----G--------------CAA-CA-----TTCCAATCAC-AG-AG---TG-TCGTC-----AT--------ATCTA---ACTC------TT-CTTTCAAT-AACTGTATATTTAA---C-TTTTTCACA-AAT-C-T-ATTCACAA-CCA-AGA-ATTTT---C-CATTTC---C--TA-TACAT-----GCG-TTTGATGACGT-GGAG--GCAGC-CA---T----TACTGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTG-C--ATTAGA--AGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA---TG-TTATC-----AT------ATATATA---AC------------------T-AA-TGTATATTTAA---C-TTTGCCTCA-CAT---TCATTAACAAGGTA-ATA-ATTTT---C-CATTTC---A--TG-TAC----------------TGTTAT-------ACA---CA---TGATTTA-TGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAG-TAGA----A--A----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA---TG-TCGTC-----AT--------ATCTA---ATTC-------TTCTCTCA--------TACA-----------GTGCCACG-AAT---CCATTCACACGCGA-ATA-ATTTT---C-CATTTC-----------CAG-----GTG-TTTTGTGACAT-GCCGGTGCAGC-CA---T--T-T-CTGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : ATCTA---ACT-------TTTCTTTCAAA-AT-TGTACATTTAA---C-TTTGCCACA-TAT-C-C-ATCCAAAAACCA-ATA-ATTTC---C-TATTTA---T--TA-TACATTGTATGTG-TTTCGTGTCAT-GGCG--GCTGC-CA---T--T--ACTGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : t---C-ATATCTATAAACAA------CTTCTT-CAAT-GA-CA-ATATTTAAAA-C-TTTGC------AT-C-C-ATTCT--AGCCA--TA-ATTTT---C-TATTTC---T--TT-TGTCT-----G-----TAGTGTAAT-GGCG--GCAGA-CAATTT--CGTA---G-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 11 1 1 1111 3333333 3333333333 111111 3333333 1111 222 22222 111111 7777777777777777777777777 111 3333333333
lowQualScore : 88 88 5 5 7777 2222222 0 8 9999999999 6 5 5 333333 0 5 5 7777 1 5 8888888 0000 4 66 4 8 777 4 1 00000 555555 1 1 777 1111111111111111111111111 333 4 4 777 3 3 3 555 3 888888 3 88888 777 0 3 0 99 3 0000000000 44 3 6 3 3 2 44444 3 3 55 1 0 2 2 5 666
lowQualScore : .. .. . . .... ....... . . .......... . . . ...... . . . .... . . ....... .... . .. . . ... . . ..... ...... . . ... ......................... ... . . ... . . . ... . ...... . ..... ... . . . .. . .......... .. . . . . . ..... . . .. . . . . . ...
lowQualScore : 55 55 0 0 7777 5555555 2 8 2222222222 4 7 7 000000 9 0 0 0000 1 0 8888888 6666 4 11 4 9 222 4 9 66666 888888 4 9 888 2222222222222222222222222 999 4 4 000 6 3 3 888 3 999999 3 33333 888 2 3 4 22 3 9999999999 22 3 7 3 3 3 55555 3 6 00 4 7 9 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----AA----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACTC-------TTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----AA----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACTC------TTTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTT--AC---AA----CAACACTTGG-CACA--ATGCCAGTCAC-AGAAA-GTTG-TCTTC-----ATT---C-ACATCTA---ACTCTTGAAGTTTCTTTCAGTAAA-AGTACATTTAA---C-TTTGCCACA-AACACACAA-TTCACAATCCA-ATA-ATTTT---C-TATTTC---T--TA-CAC-----ATGTG-TTTCGTGTCTT-GCTG--GCATC-CA---TTATGTACGGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGTTG-TCTTCATCT-ATT---C-ACA
gi|10 : tAT---CTA-TTCACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TAT-----ATGCA-TTTCGTGTCAT-GGCA--ACGTG-CA---T--TG--CTGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTagacagtaattttctatttcttgtatatatgcatttcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAG-T-------AA----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-GTCG-TCTTC-----ATT---C-ATATC-A---AC-------------------------TACATTGAA---CTTTTGTCACA-AAT---CCA-T
gi|12 : CA-ATA-ATTTT---C-CATTTC---T--TA-TAT-----AAGTG-TTTT-TGAGGT-TCCT--GCAGC-AA---T--TG--CTGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTAATT--ATA----------TTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGA
gi|13 : CA-ATACATTTTATTT-TTTTTC---T--TA-TAC-----ATATC-TTTCACGTCAT-GGCG--GTAGC-CA---T----TATTGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGG-T--AAC--AA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA---TA----TC-----ATTTAAC-ACATCTA---ACTC-------TTCTTTTAAT-AACTGTACTTTCAA---C-TTTGCCACA-AAT---TCA-TTCACAAGCCA-ATC-ATTTT---C-TATTTC---T--TA-TGC-----ATGTG-TTTTGTGTCAT-GGAA--GAAGC-CA------TG-ACTGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG-T-------GA----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATGTCG-TCTTCAGATTATT---C-ACA
gi|3 : A-TTCACAAGCCA-GAA-ATTTT---C-TATTTCAGGT--GAATAG-----ATGCA-TTTCGTGTCATTGGCA--ACAATGCA---T--TG-GCTGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCAT-T--A----AC----CAACACTCAAGCACA--ATTCTAATCAT-AG-AA-AGTGTTCTTC-----ATT---CTATATC-A---ACT---------------A---------ACATTTGAATCT-TTTGTCACACAAG---TCATTTCACAAGCCATATA---TTT---CGTAATTC---T--TA-TGC-----ATGTGAATTCGTGTC-----CGATGCAGC-CA---T----TACTG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGG-T-------AG----CAAC-------------ATTCCAATCAC-AG-AG---TG-TCGTC-----AT--------ATCTA---ACTC-------TTCTTTCAAT-AACTGTATATTTAA---C-TTTTTCACA-AAT---CTA-TTCACAA-CCA-AGA-ATTTT---C-CATTTC---C--TA-TAC-----ATGCG-TTTGATGACGT-GGAG--GCAGC-CA---T----TACTGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTG-C--ATTAGAAGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA---TG-TTATC-----AT------ATATATA---AC------------------T-AA-TGTATATTTAA---C-TTTGCCTCA-CAT---TCA-TTAACAAGGTA-ATA-ATTTT---C-CATTTC---A--TG-TAC----------------TGTTAT-------ACA---CA---TGATTTA-TGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAG-TAGA----AA----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA---TG-TCGTC-----AT--------ATCTA---ATTC-------TTCTCTCA--------TACA-----------GTGCCACG-AAT---CCA-TTCACACGCGA-ATA-ATTTT---C-CATTTC-----------C-----AGGTG-TTTTGTGACAT-GCCGGTGCAGC-CA---T--T-T-CTGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : ATCTA---ACT-------TTTCTTTCAAA-AT-TGTACATTTAA---C-TTTGCCACA-TAT---CCA-TCCAAAAACCA-ATA-ATTTC---C-TATTTA---T--TA-TACATTGTATGTG-TTTCGTGTCAT-GGCG--GCTGC-CA---T----TACTGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : t---C-ATATCTATAAACAA------CTTCTT-CAAT-GA-CA-ATATTTAAAA-C-TTTGC------AT---CCA-TTCT--AGCCA--TA-ATTTT---C-TATTTC---T--TT-TGT-----CTG-----TAGTGTAAT-GGCG--GCAGA-CAATTT--CGTA---G-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 11 1 1 1111 3333333 3333333333 111111 333333333333333 222 22222 111111 5555555555555555555555555 111 3333333333
lowQualScore : 88 88 5 5 7777 2222222 0 8 9999999999 6 5 5 333333 0 5 5 7777 1 5 888888888888888 4 66 4 8 777 4 4 00000 555555 1 1 777 4444444444444444444444444 333 4 4 777 3 3 3 555 3 888888 3 88888 777 0 3 0 99 3 0000000000 44 3 6 3 3 2 44444 3 3 55 1 0 2 2 5 666
lowQualScore : .. .. . . .... ....... . . .......... . . . ...... . . . .... . . ............... . .. . . ... . . ..... ...... . . ... ......................... ... . . ... . . . ... . ...... . ..... ... . . . .. . .......... .. . . . . . ..... . . .. . . . . . ...
lowQualScore : 55 55 0 0 7777 5555555 2 8 2222222222 4 7 7 000000 9 0 0 0000 1 0 111111111111111 4 11 4 9 222 4 7 66666 888888 4 9 888 4444444444444444444444444 999 4 4 000 6 3 3 888 3 999999 3 33333 888 2 3 4 22 3 9999999999 22 3 7 3 3 3 55555 3 6 00 4 7 9 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTT--AC---A--A----CAACACTTGG-CACA--ATGCCAGTCAC-AGAAA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-CTTGAAGTTTCTTTCAGTAAA-AGTACATTTAA---C-TTTGCCACA-AACACACAA-TTCACAATCCA-ATA-ATTTT---C-TATTTC---T--TA-CAC-----ATGTG-TTTCGTGTCTT-GCTG--GCATC-CA---TTATGTACGGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGTTG-TCTTCATCT-ATT---C-ACA
gi|10 : tAT---CTA-TTCACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TAT-----ATGCA-TTTCGTGTCAT-GGCA--ACGTG-CA---T--TG--CTGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTagacagtaattttctatttcttgtatatatgcatttcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAG-T-------A--A----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-GTCG-TCTTC-----ATT---C-ATATC-A---AC--------------------------TACATTGAA---CTTTTGTCACA-AAT---CCA-T
gi|12 : CA-ATA-ATTTT---C-CATTTC---T--TA-TAT-----AAGTG-TTTT-TGAGGT-TCCT--GCAGC-AA---T--TG--CTGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTAATT--ATA----------TTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGA
gi|13 : CA-ATACATTTTATTT-TTTTTC---T--TA-TAC-----ATATC-TTTCACGTCAT-GGCG--GTAGC-CA---T----TATTGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGG-T--A----ACAA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA---TA-TC--------ATTTAAC-ACATCTA---ACT-C-------TTCTTTTAAT-AACTGTACTTTCAA---C-TTTGCCACA-AAT---TCA-TTCACAAGCCA-ATC-ATTTT---C-TATTTC---T--TA-TGC-----ATGTG-TTTTGTGTCAT-GGAA--GAAGC-CA------TG-ACTGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG-T-------G--A----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATGTCG-TCTTCAGATTATT---C-ACA
gi|3 : A-TTCACAAGCCA-GAA-ATTTT---C-TATTTCAGGT--GAATAG-----ATGCA-TTTCGTGTCATTGGCA--ACAATGCA---T--TG-GCTGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCAT-T--A----A--C----CAACACTCAAGCACA--ATTCTAATCAT-AG-AA-AGTGTTCTTC-----ATT---CTATATC-A---ACT----------------A---------ACATTTGAATCT-TTTGTCACACAAG---TCATTTCACAAGCCATATA---TTT---CGTAATTC---T--TA-TGC-----ATGTGAATTCGTGTC-----CGATGCAGC-CA---T----TACTG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGG-T-------A--G----CAAC-------------ATTCCAATCAC-AG-AG---TG-TCGTC-----AT--------ATCTA---ACT-C-------TTCTTTCAAT-AACTGTATATTTAA---C-TTTTTCACA-AAT---CTA-TTCACAA-CCA-AGA-ATTTT---C-CATTTC---C--TA-TAC-----ATGCG-TTTGATGACGT-GGAG--GCAGC-CA---T----TACTGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTG-C--ATTAGA--AGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA---TG-TTATC-----AT------ATATATA---ACT--------------------AA-TGTATATTTAA---C-TTTGCCTCA-CAT---TCA-TTAACAAGGTA-ATA-ATTTT---C-CATTTC---A--TG-TAC----------------TGTTAT-------ACA---CA---TGATTTA-TGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAG-TAGA----A--A----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA---TG-TCGTC-----AT--------ATCTA---ATT-C-------TTCTCTCA--------TACA-----------GTGCCACG-AAT---CCA-TTCACACGCGA-ATA-ATTTT---C-CATTTC-----------C-----AGGTG-TTTTGTGACAT-GCCGGTGCAGC-CA---T--T-T-CTGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : ATCTA---ACT-T-------TTCTTTCAAA-AT-TGTACATTTAA---C-TTTGCCACA-TAT---CCA-TCCAAAAACCA-ATA-ATTTC---C-TATTTA---T--TA-TACATTGTATGTG-TTTCGTGTCAT-GGCG--GCTGC-CA---T----TACTGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : t---C-ATATCTATAAACAAC-------TTCTT-CAAT-GA-CA-ATATTTAAAA-C-TTTGC------AT---CCA-TTCT--AGCCA--TA-ATTTT---C-TATTTC---T--TT-TGT-----CTG-----TAGTGTAAT-GGCG--GCAGA-CAATTT--CGTA---G-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 11 1 1 1111 3333333 3333333333 111111 333333333333333 222 22222 111111 5555555555555555555555555 111 3333333333
lowQualScore : 88 88 5 5 7777 2222222 0 8 9999999999 6 5 5 333333 0 5 5 7777 1 5 888888888888888 4 66 4 8 777 4 4 00000 555555 1 1 777 4444444444444444444444444 333 4 4 777 3 3 3 555 3 888888 3 88888 777 0 3 0 99 3 0000000000 44 3 6 3 3 2 44444 3 3 55 1 0 2 2 5 666
lowQualScore : .. .. . . .... ....... . . .......... . . . ...... . . . .... . . ............... . .. . . ... . . ..... ...... . . ... ......................... ... . . ... . . . ... . ...... . ..... ... . . . .. . .......... .. . . . . . ..... . . .. . . . . . ...
lowQualScore : 55 55 0 0 7777 5555555 2 8 2222222222 4 7 7 000000 9 0 0 0000 1 0 111111111111111 4 11 4 9 222 4 7 66666 888888 4 9 888 4444444444444444444444444 999 4 4 000 6 3 3 888 3 999999 3 33333 888 2 3 4 22 3 9999999999 22 3 7 3 3 3 55555 3 6 00 4 7 9 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTT--AC---A--A----CAACACTTGG-CACA--ATGCCAGTCAC-AGAAA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-CTTGAAGTTTCTTTCAGTAAA-AGTACATTTAA---C-TTTGCCACA-AACACACAA-TTCACAATCCA-ATA-ATTTT---C-TATTTC---T--TA-CAC-----ATGTG-TTTCGTGTCTT-GCTG--GCATC-CA---TTATGTACGGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGTTG-TCTTCATCT-ATT---C-ACA
gi|10 : tAT---CTA-TTCACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TAT-----ATGCA-TTTCGTGTCAT-GGCA--ACGTG-CA---T--TG--CTGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTagacagtaattttctatttcttgtatatatgcatttcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAG-T-------A--A----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-GTCG-TCTTC-----ATT---C-ATATC-A---AC--------------------------TACATTGAA---CTTTTGTCACA-AAT---CCA-T
gi|12 : CA-ATA-ATTTT---C-CATTTC---T--TA-TAT-----AAGTG-TTTT-TGAGGT-TCCT--GCAGC-AA---T--TG--CTGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTAATT--ATA----------TTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGA
gi|13 : CA-ATACATTTTATTT-TTTTTC---T--TA-TAC-----ATATC-TTTCACGTCAT-GGCG--GTAGC-CA---T----TATTGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGG-T--A----ACAA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA---TA-TC--------ATTTAAC-ACATCTA---ACT-C-------TTCTTTTAAT-AACTGTACTTTCAA---C-TTTGCCACA-AAT---TCA-TTCACAAGCCA-ATC-ATTTT---C-TATTTC---T--TA-TGC-----ATGTG-TTTTGTGTCAT-GGAA--GAAGC-CA------TG-ACTGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG-T-------G--A----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATGTCG-TCTTCAGATTATT---C-ACA
gi|3 : A-TTCACAAGCCA-GAA-ATTTT---C-TATTTCAGGT--GAATAG-----ATGCA-TTTCGTGTCATTGGCA--ACAATGCA---T--TG-GCTGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCAT-T--A----A--C----CAACACTCAAGCACA--ATTCTAATCAT-AG-AA-AGTGTTCTTC-----ATT---CTATATC-A---ACT----------------A---------ACATTTGAATCT-TTTGTCACACAAG---TCATTTCACAAGCCATATA---TTT---CGTAATTC---T--TA-TGC-----ATGTGAATTCGTGTC-----CGATGCAGC-CA---T----TACTG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGG-T-------A--G----CAAC-------------ATTCCAATCAC-AG-AG---TG-TCGTC-----AT--------ATCTA---ACT-C-------TTCTTTCAAT-AACTGTATATTTAA---C-TTTTTCACA-AAT---CTA-TTCACAA-CCA-AGA-ATTTT---C-CATTTC---C--TA-TAC-----ATGCG-TTTGATGACGT-GGAG--GCAGC-CA---T----TACTGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTG-C--ATTAGA--AGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA---TG-TTATC-----AT------ATATATA---ACT--------------------AA-TGTATATTTAA---C-TTTGCCTCA-CAT---TCA-TTAACAAGGTA-ATA-ATTTT---C-CATTTC---A--TG-TAC----------------TGTTAT-------ACA---CA---TGATTTA-TGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAG-TAGA----A--A----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA---TG-TCGTC-----AT--------ATCTA---ATT-C-------TTCTCTCA--------TACA-----------GTGCCACG-AAT---CCA-TTCACACGCGA-ATA-ATTTT---C-CATTTC-----------C-----AGGTG-TTTTGTGACAT-GCCGGTGCAGC-CA---T--T-T-CTGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : ATCTA---ACT-T-------TTCTTTCAAA-AT-TGTACATTTAA---C-TTTGCCACA-TAT---CCA-TCCAAAAACCA-ATA-ATTTC---C-TATTTA---T--TA-TACATTGTATGTG-TTTCGTGTCAT-GGCG--GCTGC-CA---T----TACTGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : t---C-ATATCTATAAACAAC-------TTCTT-CAAT-GA-CA-ATATTTAAAA-C-TTTGC------AT---CCA-TTCT--AGCCA--TA-ATTTT---C-TATTTC---T--TT-TGT-----CTG-----TAGTGTAAT-GGCG--GCAGA-CAATTT--CGTA---G-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
blockSeqs : TA . . . GAC GTATCTG G AGTGTCTGCA C T T CCAC T G GGG A . ATTAGAAGCAT G AG A A TGT T T AGATT TTAAC C T TAA CTTCTTTTAATAACTG ATC T C . T T C ATT G AGGT A ATTGT TGA T AT G ATTTCGTA GG A A C G T CAA C A AA T C T T TAG
blockSeqs : TC . T TGCA T . . ACCA . . AG G . AACAA . . . . TGT . T ATCT TCT T T . CTTCTTTCAATAACTG AA . . . . . . . . TTG . . CA . GT . TGATTTA G . A . . G GAT . . . C A . T .
blockSeqs : . . . A . . CGA . . G G . AGAAA . . . . GT . T . TC C T . TTTCTTTCAAAATTG . . . . . . . . . T . . TG . . . TTGG A . . . . C GCA . . . C C . . .
blockSeqs : . . . CC . . G A . AAC . . . . AG . T . TC C T . ACTTCTTCAATGACA . . . . . . . . . T . . TC . . . TTG G . . . . T AA . . . T C . . .
blockSeqs : . . CA . . G G . AA . . . . . . G . TC T T . CTTCTCTCA . . . . . . . . . T . . TG . . . TTG G . . . . C AA . . . C A . . .
blockSeqs : . . GA . . C T . GA . . . . . . A . . T T . AATG . . . . . . . . . T . . CA . . . TTA A . . . . T GA . . . C T . . .
blockSeqs : . . A A . AG . . . . . . G . . T . . A . . . . . . . . . C . . CG . . . TGA A . . . . C GA . . . T A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . TG . . . TTA A . . . . C AA . . . C . . . .
blockSeqs : . . . . . . . T . . TG . . . TTA A . . . . C GA . . . . . . .
blockSeqs : . . . . . T . . . . . . TTT G . . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . TTA . . . . . . . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : AAA************ G** CTTCTTTCAATAG************ *** TTA*******
originalCons : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-T--A----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-GTTG-TCTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT-AA-TGTACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CA---T--TGTACTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
finalCons : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-TAAA------------CAACACTCAA-CACA--ATTCCAATCAC-AG-AAG--TG-TCTTC-----ATT---C-ACATCTA---ACTCTTCTTTCAATAG------------TACATTTAA---C-TTTGCCACA-AAT---CCA-TTCACAAGCCA-ATA-ATTTT---C-TATTTC---T--TA-TAC-----ATGCG-TTTCGTGTCAT-GGCG--GCAGC-CATTA-------CTGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC
Alignments
lowQualScore : 11 11 1 1 1111 3333333 3333333333 111111 3333333333333 3333 22222 111111 666666666666666666666666666 111
lowQualScore : 88 88 5 5 7777 2222222 0 8 9999999999 6 5 5 333333 0 5 5 7777 1 5 8888888888888 4 66 4 4 2222 8 4 4 00000 555555 1 1 777 222222222222222222222222222 4 0 333 4 4 777 4 3 3 555 3 555 44 3 999999999 0 3 0 99 3 3 7777 3 999 44 3 6 3 3 2 44444 3 3 55 1 0 2 2 5 666
lowQualScore : .. .. . . .... ....... . . .......... . . . ...... . . . .... . . ............. . .. . . .... . . . ..... ...... . . ... ........................... . . ... . . ... . . . ... . ... .. . ......... . . . .. . . .... . ... .. . . . . . ..... . . .. . . . . . ...
lowQualScore : 55 55 0 0 7777 5555555 2 8 2222222222 4 7 7 000000 9 0 0 0000 1 0 1111111111111 4 11 4 4 3333 9 4 7 66666 888888 4 9 888 666666666666666666666666666 4 8 999 4 4 000 0 3 3 888 3 888 66 3 666666666 2 3 4 22 3 3 1111 3 222 22 3 7 3 3 3 55555 3 6 00 4 7 9 9 7 444
consensus : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-TA----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-G--T-GT-CTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT---A---GTA-CATTTAA---C-TTTGCCACA-AAT---CCATT-CACAAGCCA-ATA-ATTTT---C-TATTTC---TT--A-TACAT-----GCG-TTTCGTGTCAT-GGCG--GCAG-C-CAT----TA-C---TGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
Reference ( family-3795 ) : NNCAGAAGCTAGGAAATTCAATTGCTCGCTCAGCAACAAN-C-AGCCGTCCCCAACCAGACGACC-------TGCCAGTACAAGCG------CCTGCGC-AGATACCTGCA-AC--C-A-TGCCGTTTGGATCCCCATTTCCGGC-GATGA-GC-G--TCGG-TA----A--A----CAACACTCAA-CACA--ATTCCAATCAC-AG-AA-G--T-GT-CTTC-----ATT---C-ACATCTA---ACT-C-------TTCTTTCAAT---A---GTA-CATTTAA---C-TTTGCCACA-AAT---CCATT-CACAAGCCA-ATA-ATTTT---C-TATTTC---TT--A-TACAT-----GCG-TTTCGTGTCAT-GGCG--GCAG-C-CAT----TA-C---TGG-AC-TG-C-A-CCAGCT-G-A-TT-C-TTTGTATTC--TTGCGCGACCGCTTTA-CATTA-TCTGGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|1 : CAGAAAC--AGAAATTTAATTGCTCGCTCATCCATACC-CTAGCCGTCCCCAACCAGATGACC-------TACAAGTACAAGTG------CCTGTCC-AGATACCTGCA-AC--C-A-TGTCGTTTGGATCTCCACTTCCGGC-GATGA-GC-G--TCAGTTAC---A--A----CAACACTTGG-CACA--ATGCCAGTCAC-AG-AA-AGTT-GT-CTTC-----ATT---C-ACATCTA---ACT-CTTGAAGTTTCTTTCAGTAAAA---GTA-CATTTAA---C-TTTGCCACA-AACACACAATT-CACAATCCA-ATA-ATTTT---C-TATTTC---TT--A-CACAT-----GTG-TTTCGTGTCTT-GCTG--GCAT-C-CATTATGTA-C---GGG-AC-TG-C-A-CTAGCT-G-A-TT-C-TTTGTATTC--TTGTGCGACCGCTTTA-CATTA-CCTGGGTTATT---TGAGGTCGCGTGTGAAGAAA
gi|10 : acACTCAA-CACA--ATCTCAATGAC-AG-AATGT-T-GT-CTTCATCT-ATT---C-ACA
gi|10 : tAT---CTATT-CACAAGACA-GTA-ATTTT---C-TATTTC---TTGTA-TATAT-----GCA-TTTCGTGTCAT-GGCA--ACGT-G-CAT----TG-C---TGG-AC-TC-C-A-CCAGTC-A-A-TC-C-TTTGTATCC--TTTTGGGATCGCTTTA-CATTA-CCTGGGTTagacagtaattttctatttcttgtatatatgcatttcgtgtcatggcaacgtgcattgctggactccaccagtcaatcctttgtatccttttgggatcgctttacattacctgggtt
gi|11 : tactcaacacaatctcaatgacagaatgttgtcttcGC-AAATACCTGCA-GC--C-C-TGCCATTTGGATCCCCATTTCCGAC-TATGA-GC-G--TCAG-T-----A--A----CAACACTCAA-CACA--ATTCTAATCAT-AGAAA-G--TCGT-CTTC-----ATT---C-ATATC-A---AC----------------------------TA-CATTGAA---CTTTTGTCACA-AAT---CCAT
gi|12 : CA-ATA-ATTTT---C-CATTTC---TT--A-TATAA-----GTG-TTTT-TGAGGT-TCCT--GCAG-C-AAT----TG-C---TGA-AC-AA-CCA-CTATGT-A-A-TT-C-TTTGTAATT--ATA----------TTG-CGTTA-TCAGGTTCATT----GAGGTCATGTGCAAAGA
gi|13 : CA-ATACATTTTATTT-TTTTTC---TT--A-TACAT-----ATC-TTTCACGTCAT-GGCG--GTAG-C-CAT----TA-T---TGG-AC-AG-C-A-C--------------------ATTC--TTGCGCAACCGATTTT-CATTG-TCTGAGTTA-----TAAGGTCAcata
gi|15 : TTTA-CATCA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAA
gi|16 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaat
gi|17 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGATCAAGAAAtaa
gi|18 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCATGGGTCAAGAAAtaa
gi|19 : TTTA-CATTA-TCTAGGTTATT---TGAGGTCAT-GGTCAAGAAAtaa
gi|2 : CAGAAGCTAGGAAATTCA--TG-TCA-TCAGCAACAAT-C-AGCCGTCCCTAACCAGACGATC-------TGCCAGTACAAGTGTCTGCACCTGCGC-AAATACCTGCA-AT--C-A-TGCTGTCTGGATCCCCATTTCCGGT-GATGA-GA-G--ATGG-TA----ACAA----CAACACTCAA-CACA--ATTTCAATCAC-AG-AA----T-AT-C--------ATTTAAC-ACATCTA---ACT-C-------TTCTTTTAAT---AACTGTA-CTTTCAA---C-TTTGCCACA-AAT---TCATT-CACAAGCCA-ATC-ATTTT---C-TATTTC---TT--A-TGCAT-----GTG-TTTTGTGTCAT-GGAA--GAAG-C-CAT----GA-C---TGG-AC-TG-C-A-CCAGCT-G-A-CT-C-TTTGTATTC--TTGCATGACTGCTTTA-CATTA-TCTGGGTTATT---taa
gi|3 : gacaGCAACAAGAC-AGCCGTTCTCTACCAGGCAACCGTATCTGTGCTATTACCTGCA------CCTGTGCTAGATACCTCCA-AC--CGA-TGACAT---------CATT-----C-GATGAGGC-G--TCGG-T-----G--A----CAATACTCAA-CACAAGATTCAAGTGACAAG-AATG--TCGT-CTTCAGATTATT---C-ACA
gi|3 : ATT-CACAAGCCA-GAA-ATTTT---C-TATTTCAGGTG--AATAGAT-----GCA-TTTCGTGTCATTGGCA--ACAA-TGCAT----TGGC---TGGGAC-TG-C-AGCCAGTTCA-A-TC-C-TTTGTATTC--TTTTGGGATCGCTTTA-CATTA-TCTGGagccagaaattttctatttcaggtgaatagatgcatttcgtgtcattggcaacaatgcattggctgggactgcagccagttcaatcctttgtattcttttgggatcgctttacattatctggtt
gi|4 : gcaacaagacagccgttctctaccaggcaaccgtatctgtgctattacctgcacctgtgctagatacctccaaccgatgacatcattcgatgaggcgtcggtgacaatactcaacacaagattcaagtgacaagaatgtcgtcttcagattC-AAATAC-TGCA-GC--CCACTGC--TTTGGATCCC-ATTTC-GACTAATGA-GC-GGGTCAT-TA----A--C----CAACACTCAAGCACA--ATTCTAATCAT-AG-AAAG--T-GTTCTTC-----ATT---CTATATC-A---ACT----------------------A-----A-CATTTGAATCT-TTTGTCACACAAG---TCATTTCACAAGCCATATA---TTT---CGTAATTC---TT--A-TGCAT-----GTGAATTCGTGTC-----CGATGCAG-C-CAT----TA-C---TG----------A-CTAG---G------C-TTT--------TTGCGTGAGCAATTTA-CATTGTTCTGGGTTATTTAGTGTGGTC-TGTGTTAAGAAtt
gi|5 : ACAAGATGGCC-------TACCA-TGCA---------------GT-AGAAACCTGCA-ACACC-A-TGCCGTTCAGATCCCCATTCCCGGC-GATGA-GC-C--TTGG-TA----G--------------CAA-CA-----TTCCAATCAC-AG-A--G--T-GT-CGTC-----AT--------ATCTA---ACT-C-------TTCTTTCAAT---AACTGTA-TATTTAA---C-TTTTTCACA-AAT---CTATT-CACAA-CCA-AGA-ATTTT---C-CATTTC---CT--A-TACAT-----GCG-TTTGATGACGT-GGAG--GCAG-C-CAT----TA-C---TGA-AG-TGAC-A-CCATCT-G-ATTT-C-TGTGTATTC--TT
gi|6 : CTGAGT-AAATACCTGCATAT--G-A-TATCGTTTGGATTCCAATTTCCGGC-GATGC-GCAG--GCTG-CATTAGA--AGCATCAAAATTGGA-CATA--ATTCCAATCAC-AG-AA----T-GT-TATC-----AT------ATATATA---ACT----------------AAT-------GTA-TATTTAA---C-TTTGCCTCA-CAT---TCATT-AACAAGGTA-ATA-ATTTT---C-CATTTC---AT--G-TAC----------------TGTTAT-------ACA----CAT----GA-TTTATGA-AC-TGAC-A-CCAGTT-G-A-TT-aag
gi|7 : tacaatataatttaTTTGGATTCCCATTCCCGAC-GACGA-GC-A--TCAG-TAGA--A--A----CACCACTCAA-CATA--ATTCCAACTAC-AG-AA----T-GT-CGTC-----AT--------ATCTA---ATT-C-------TTCTCTCA----------TA-CAGT-----------GCCACG-AAT---CCATT-CACACGCGA-ATA-ATTTT---C-CATTTC-----------CAG-----GTG-TTTTGTGACAT-GCCGGTGCAG-C-CAT----TT-C---TGA-ACATT-C-A-CCATCT-A-A-TT-TATTTGTATTC--CTGCGCGACCGtct
gi|8 : ATCTA---ACT-T-------TTCTTTCAAA---ATT-GTA-CATTTAA---C-TTTGCCACA-TAT---CCATC-CAAAAACCA-ATA-ATTTC---C-TATTTA---TT--A-TACATTGTATGTG-TTTCGTGTCAT-GGCG--GCTG-C-CAT----TA-C---TGA-AC-TG-C-A-CTAGCT-G-A-TT-C-GTTGTATTC--TTATGCGACCGTTTTG-TAATA-TCTCGGTTATT---TGGG
gi|9 : t---C-ATATCTATAAACAAC-------TTCTT-CAAT---G---ACAATATTTAAAA-C-TTTGC------AT---CCATT-CT--AGCCA--TA-ATTTT---C-TATTTC---TT--T-TGTCT-----G-----TAGTGTAAT-GGCG--GCAGAC-AAT----TT-CG--TAG-AC-TG-C-A-GCAGCT-GCA-TTCC-TTTGTATTCAATGGCTCGATCAATTTATCGGTATTCAGGGTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTATTTCTTAGATATACATGTATGTGTTGAAATCACGTCATAACCGGACTGTACATTCTTAACCGATC