lowQualScore : 1111111111111111111111 11111111111111 111111111111111111111111111111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 4 66666666 11 44444444 1 111 11 1111111111111111111111 2222 1 11 1 555 1 1111 22222 11 111 11 1111111111 11111 111111 222222222222222 77777 00000000000000 1 7777777777 11 222222 888888888888 2222222222 222 11 111 1111 1111 11 11 111111 88888888888888 1 111111 11111111 11 222222222222222222222222222222222222222222222222222222222222222222 11 444444444444 222222222222 2222222222222 333333333333333 22222222222 11 111111 1111 111 1 22222222222 9999999999999999999999999999 222 3333333 1 11 77777777777777777777777777777 2222222222222 22222 1111 3333333333333333 1 1 2222222 111 55555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 444444444
lowQualScore : 6 0 00000000 6 88 88888888 3 777 6 88 7 4444444444444444444444 4 1111 0 11 8 8 8 6 2 0 8 0 333 8 7 5 5 4444 2 2 1 0 55555 11 8 444 11 6 7777777777 0 11111 6 5555 2 111111 666666666666666 6 22222 6 6 22222222222222 6 5 5 5 1 5 99 6 6666666666 6 33 000000 000000000000 6 333 1111111111 6 1 6 2 7 333 88 5 77 000 2222 9999 55 2 66 4 1 66 4 66 99 66 5 5 55 5 5 666666 5 5 5 5 00000000000000 4 3 77 666666 44444444 11 888888888888888888888888888888888888888888888888888888888888888888 77 00 55 999999999999 555555555555 6 1 4 66 9999 4 4 1 2222222222222 777 66 777 1 888888888888888 66666666666 66 1 88 444444 0000 666 0 0 0 11111111111 66 3333333333333333333333333333 1 000 7777777 2 5 5 88 22 1 55555555555555555555555555555 5 3333333333333 66666 0000 0000000000000000 0 0 5 5 5 7 5555555 7 555 77777777777777777777777777777777777777777777777777777777777777777777777777777777 2 6 6666 3 2 111111111
lowQualScore : . . ........ . .. ........ . ... . .. . ...................... . .... . .. . . . . . . . . ... . . . . .... . . . . ..... .. . ... .. . .......... . ..... . .... . ...... ............... . ..... . . .............. . . . . . . .. . .......... . .. ...... ............ . ... .......... . . . . . ... .. . .. ... .... .... .. . .. . . .. . .. .. .. . . .. . . ...... . . . . .............. . . .. ...... ........ .. .................................................................. .. .. .. ............ ............ . . . .. .... . . . ............. ... .. ... . ............... ........... .. . .. ...... .... ... . . . ........... .. ............................ . ... ....... . . . .. .. . ............................. . ............. ..... .... ................ . . . . . . ....... . ... ................................................................................ . . .... . . .........
lowQualScore : 0 0 00000000 7 33 33333333 3 777 0 33 7 0000000000000000000000 7 2222 0 00 0 0 0 0 8 8 0 8 666 0 3 3 2 8888 2 5 0 8 55555 00 0 000 88 7 0000000000 7 00000 7 7777 5 555555 222222222222222 7 66666 7 7 88888888888888 7 0 7 7 4 7 22 7 8888888888 7 33 333333 777777777777 7 777 7777777777 7 0 7 5 2 999 44 7 99 000 1111 6666 55 0 77 4 1 44 4 11 77 11 0 0 11 0 0 444444 7 7 7 7 11111111111111 4 7 99 444444 66666666 00 666666666666666666666666666666666666666666666666666666666666666666 77 22 00 999999999999 666666666666 4 0 4 11 4444 4 4 1 7777777777777 888 11 888 9 777777777777777 66666666666 77 1 88 444444 6666 222 1 1 0 11111111111 99 0000000000000000000000000000 4 000 1111111 1 7 7 77 77 4 44444444444444444444444444444 0 2222222222222 99999 6666 8888888888888888 0 0 0 0 0 2 0000000 1 777 55555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 2222 2 2 888888888
consensus : ACACGATTCCAAAAAGTCGCGCCATCG--A-----GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTNTAT-GNA--------A--AC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATTTACTC-ATT---AAA-ATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAA-GC-GTCAGTTTTA--AA-TGACTATAT---GGAGATTTTATTT-NGATTTC-CCGT--A-T-T-TAGCAAGAAGA--C--CC-GCCTCGATCGAAGTTTTGCTACGA--TA--GA--------T-T-T--GGA-ATGCTTAT--GCGCACGATT-AGGG-TAAAAAA------TT----CGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTT-ACTTTAAATAAT-TGATATA-NAACTTT---C-GATCAAGCT-------TATT-T-AAAGGGAATTTATG--C---T---AG-AGATGCGAT-CGACGTCATGAGAGATC-ACCAAT-AT-TGT--AAA---CCCT----TTTT-ATTTGCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTGATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAA------N------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATTGCAAATT-TGTCNCTT-TTAT---GCAACTGCAAA------------ACTATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTC---A--ATGTA---AGCT--AG----AC----TACTA---------TTAT-AAAGAGTTTGA--TTT------GCA----GTGGTGTTGGAAC-GGGGGNGG--------GGG--GG-G---T-----------TC--------AAAACGTA---AAG-------AATTGACCTTT-AC-CCACGTTTTTCAAGCGATAGT-----GTTT--ATCAAC-----------GAAGTAANCCCGTTTT----T-T---NA-TATA-T---CCCAT----TGCC--------------TATGA-TT-C-C-ATTGTCTAATTTCA-TTTAAT---C-AATTTTAAT--GAAGTTAAG----TTTG--GGAATGTTCGTAA--------T-TGATTTGT-AGGTCA--T-TTTGC-NCCCC-CCCC-CCCTTC-T-TTTNTGTTCGTT--TTAATCTCGGATTTTCT-GCAGTGG-AATTTAGTTT
Reference ( gi|1 ) : ACACGATTTCAAAAAGTC-CGCCATCG--T-----GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AGCTTTG--GCAT------CA-CAC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTCTACTC-ATTTTAAAA-ATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAA-GC-TTCAGTTTTA--AA-TGACTATAT---GGAGATTTTATTT-CGATTTC-CCGT--A-T-T-TAGCAAGGAGA--C--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTATAAATGCACGATT-AGGG-TAAAAAAAAAAAATT----CGC-GAGTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTTTACTTTAAATAAT-TGATATA-CAACTTT---C-GATCAAGCTA--AAAATATTAT-AAAGGGAATTTATG--C---T---AG-AGATGCGAT-CGACGTCATGAGAGATT-GCCAAA-AT-TGT--AAA---CCCT----TTTA-ACTTGCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-CAT--TTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTTATTTTTTTTTTTTTATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAA------T------ATAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATTGCAAATT-TGTCTCTT-TTAT---GCAACTGCAAA------------ATTATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTC---A--ATGTA---AGCA--AG----AC----TACTG---------TTAT-AAAGAGTTTGA--TTT------GCA----GTGATTTTGGAAC-GGGGGTGG--------GGG--GATG---T-----------TC--------AAGACGTA---AAG-------AACTGACCTTT-AC-CCATATTTTTCAAGCGATAGT-----G-----ATGAAC-----------GAAGTAATCCCGTTTT----T-T---CA-TATA-A---TCCAT----TGTC--------------TATGA-TT-C-C-ATTGTCTAATTTCA-TTAAGT---A-AATTTTAAT--GAAGTTAGA----TTTG--AAAATGTTCGTAAGAACTAGGTACAGTTTCTAAAGTCAAATGTTTGTATCATTGCCCC-CCCGTC-T-TTTGTGCTCATT--TTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|4 : ACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTTA--GCACACTCTCCAGCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATTCACTCCATT---AAA-ATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGAT-ACGTTCAGTTTTACAAA-TTACTATATTGGGAAGATTTTATTT-CGATTTC-CCGT--AGTAT-TAGTCAGAAGC--T--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTA-ATGCGCACGATT-GGGGCTAAGAAA-------T----AGC-GATTAGG-TAAAGT-AT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTT--TATGATCG----CTTTAAATAATGTGATATACCAACGTTATGCGGATCAAGCTATTATAATGTTAT-AAAAGGACTTTATG--C---T---AGTAGATG-GATACGACGTCGTGAGAGATCAAACAAACATGTGT--AAGTACCCCT----TTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGTTAT--TTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTA--TTCTTTTTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTAT------A------ATAAA-----T---TACC-----TC---ACCGT-----------------T---TGATTCGAAATTGTGT-TCTTATAATACAGCAACTGCGAA------------A-CATC-GTGTATCATGAAAA--CG----T-GATTTCAATCTTGGG----A--------TTT---ATCATGTA---AGCA--AGAAATACATGGTACTA---------TTATAAAAGAGTTTGAC-TTT------GCA----GTGGTTTTGGAAC--GGGGTGG--------GGG--G
gi|3 : CACGATTCCAAAAAGTCGCGCCATCG--A-----GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTGTGTAGAA-----------AC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAAT-TAT---ATT----AA-ATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAA-GC-GTCAGTTTTA--AA-TGAGTGTAT---GGAGATTTTAGTA-AGGTTCC-CC-----------AACAAGAAGA--C--CC-GCCTCGATCGAAGTTTTGCTAC-----A--GA--------T-T-T--GGA-ATGCTT--------------------TAAAAAAA------T----CGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATAAAATATGCAATTGTTTTCATTT--TAT-ATTG-----TTTAGATAAT-TGATATA-GAACTTT---C-GATCAAGCT------TTATTTTAAAAGGGAATGTATGCTC---T---AG-AGATGCGAT-CGACGTCATGAGAGATC-ACCAAT-AT-TGTTCAAA---CTCTTCAGTTTT-ATTTGCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG-TAT--TTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Atg
gi|2 : ACGATTCCAAAAAGTCGCGCCATCG--A-----GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AGCTATAT-GTAG------AA--ACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATTTACTC-ATT--AAAATATATT--TGATTTCCGT-----------------CTT-----CAATTAAATGGGAA-GC-GTTATTTTTA--AA-TGACTATAT---GAGGATTTTATTT-AGATTTC-CCAT--A-T-T-TAGCAAGAAAA--C--CC-TCC-------AAGTTTTGCT---A--TA--GA--------T-C-G--GGA-GTGTTT----GTGCACGATT-AGGG-TAAAattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATTTACTC-ATT---AAA-ATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAATG---TCAGTTTTA--AAATGATTATCT---TGAGATTT-ATTT-AGATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCCTCGA----AGTTT-GCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTT-T---TGCGCGATTTAGGG-TAAAG--------TTTTTTCGCTGATTAGGGTAAAGTTATATTATT-GTACAATCAAATATGCAA--GTTTTCATTT--TAT-TTC--------------------TATA-AAACTTT---C-TTTCAAGCT----------T-T-AAAGGAAATTTAAG--C---TTATAG-AGATGCGAT-CAACA-CA-GAGA-AT----CAAT-AT-TGT--AAA---ACTT----CTTT-ATTTGCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG-TA---TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C------CT---TTTTTTTTTCTTGATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAA-------------GGGAA-----T---CA-C-----AA---AAGGG-----------------TACATAATT---AATA-TAATTTAT-TTAT---G--ATGACAAAAATTGTCACTTTACTATCAGTGTATCGTG-AAA--CG----T-GATAAG-ATTTTGGGACAGAAGAATTCTCTC---A--AT-TA---CGAAGTAG----AT----TACTG---------TT-T-AAAgtttttttcgcgatcaaatatgcaatattttcattttatattgtttacataattgatatagaactttcaattaagctttattttaaagagaatgtatgctagagatgtgatcgacgtaatgagagatcatcaacattgtaaccttttttaattgcaaatcataaaaattcacaaatcttacacgtttgtattacgtatttggatgttatgtatagaatttatgaattactctgtggtgaaattgacggttattttttctctctcttgatgcacgcgtacgatatttcatgttgccagaaacaaattaaatcacaaaagtgtttacttaccggtatgattgtaaatttgtcactactgcaaaactattagcatatcatgaaacgtgattttattttgggaatattcaatgtactaagctagactactattataaagagtttgatttgaacggagagggtgtcaaagacgtaaagaatttacctttacccatattttcaagggatagtgttttgatgaacgaagtaatcccgtttttttaatatatcccattgcttatgattccattgtctaatttaaataaatcaatgttaatgaagtcagatttgtttgaatatgttcgtaaattgtatcccccctcccttgtgttcatttaatttaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|17 : aaacggactagggtaaagtgcgagatcaaatgA--TA-GGC-ATGTCCGCTT-CCAATTTACTC-A---TGGAA-ATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAa
gi|14 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatTTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAAT
gi|19 : TA--AA-TGACTATAT---GGAGATTTTATTT-CGATCTC-CCAT--A-T-T-TAGCAAGAAGA--C--CC-GCCTCGATTGAAGTTTTGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|7 : TATTTATGATTTC-ACTTTAA-T-TATAGCA--GAAA--CTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTTgaatgattagggtccaaactccccgtcgatcaa
gi|11 : tgattagtttttgaTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTATG--CGCACGATT-GGGG-TAAAAA--------T----AGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATG-AA-TGTTTTCATTTAGTA--ATTGTT-A----AAAGACT-TGATATC-CAACTTC------ATCAAGCTA--ACTATATTAT-TAAGGGA-----------------------TGC-AT-CGACGTCAGGACAG-TC-ACCACC-AT-T----AAA---CCCC----TTTT-ATCTACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTA--TTCTTT-TTTTTTTTTTTTGATGC--ACG------ATAT-----TT-gggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|14 : ATGCACGATT-AGGG-TAAAA---AAAAATT----CGC-GATTAGGATAAAGTTAT-TTATT-GT---ATCAAATATGCAA-TGTTTTCATTT--TAT-AT
gi|2 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntt----CAC-GATTAGGGTAAAGTTTT-TT-TC-G--CGATCAAATATGCAA-TATTTTCATTT--TAT-ATTGTTTAC-----ATAAT-TGATATA-GAACTTT---C-AATTAAGCTT------TATTTT-AAAGAGAATGTATG--C---T---AG-AGATGTGAT-CGACGTAATGAGAGATC-ATCAAC-AT-TGT--AAC---CTTT----TTTA-A-TTGCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG-TAT--TTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTATTTT------TTCTCTCTCTTGATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAA------TTAAATCACAAAAGTGTT---TA-C-----TT---ACCGG-----------------T--ATGATTGTAAATT-TGTCACT------------ACTGCAAA------------ACTATTAGCATATCATG-AAA--CG----T-GATTTT-ATTTTGGGA-ATA--------TTC---A--ATGTACTAAGCT--AG----AC----TACTA---------TTAT-AAAGAGTTTGA--TTT------G----------------AAC-GGAGA-------------G--GGTG---T-----------CA--------AAGACGTA---AAG-------AATTTACCTTT-AC-CCATATTTT-CAAGGGATAGT-----GTTTTGATGAAC-----------GAAGTAATCCCGTTTT----T-T---TAATATA-T---CCCAT----TGCT--------------TATGA-TT-C-C-ATTGTCTAATTTAA-ATAAAT---C-AATGTTAAT--GAAGTCAGATTTGTTTG--AATATGTTCGTAA
gi|6 : acgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaatgaagatagctatatgtagaaacggatgagggtgaagtgcggcatgttcgcttccaatttactcattaaaatatatttgatttccgtcttcaattaaatgggaagcgttatttttaaatgactatatgaggattttatttagatttcccatatttagcaagaaaaccctccaagttttgctatagatcgggagtgtttgtgTAGGGTAGAGTTAT-TTATT-GTACGATCAAATATACAA-TGTTattgtatcccccctcccttgtgttcatttaatttaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|16 : tttatTAAT-TGATATA-AAACTTT---C-ATTCAAGCC-------T----T-AAAGGGAACTTGTT--CTAGT---AG-AGATGCGTT-CGACGT----AGAGATC-ACCAAT-GT-TGT--AAA---CCCT----TTT--ATTTG---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG-GAT--TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcaccaattgatcataaaatttcataaatcttgaacgttgcatcacgtatatttggatgttaaaatttatggcttattccgtggtgaaattgacggcgatttatttttcttgatgcacgatatcgatattacgtgttgcctgaaacaaaggaaatcacttgaaacgggcacatatgtcatttatttatgatttcaaatttgtcactttaaactattagtgtatcatgaaacgtgatttcattttgggaatgttcaatgtaacctcgactacaattatattgagtgtaattttcagtcacagtggtgttcgaacgggagtggccgggggtgggggtgactttccccaaccaaaacgtagagaattgacctttaccaacatttacaagcgatagtgtttccatcaatgaagtaaactcgttgtttaatatatcccactgcctatgattcccattgtctaatttcatttaatcaattgtaatgaagtt
gi|8 : AGAGATC-ACCAGT-AT-TGT--ATA---CCTA----TTTT-ACTGCCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG-TAT--TTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG--------------TTTTTTTTCTTGATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATC------ACAAA-----TGGGTA-CATATATC---ATTTA-----------------TTCATGATTGCAAATT-TGTCACTT-TTAT---ACAGCTGTAAA------------ACTATCATGGTAT-ATA-AAA---G----T-GATTTT-------GCA-ATG--------CTCACGA--ATGTA---AGCT--AG----A------ACTA----------TAT-----AGGTTAATTTTT------GAA----GCGG--TTGGG---GGGGGGGG--------GGG--GAt
gi|6 : CAA-TTGATCATAAAAT-TTCATAAATCTTGAA-CGTT--GCA-T--CACG-TATATTTGGATG-TTA------AA--ATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGATTT-----ATTTTTCTTG----ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAA------G------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATTTCAAATT-TGTCACTT-T---------------AA------------ACTATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATG--------TTC---A--ATGTA---ACCT--CG----AC----TACAA---------TTAT-ATTGAGTGTAA--TTTTCAGTCACA----GTGGTGTTCGAAC-GGGAGTGGCCGGGGGTGGG--GGTGACTT-----------TCCCCAACC-AAAACGTA---GAG-------AATTGACCTTT-AC-CAACATTTA-CAAGCGATAGT-----GTTTCCATCAAT-----------GAAGTAAACTCGTTGT----T-T---AA-TATA-T---CCCAC----TGCC--------------TATGA-TT-C-CCATTGTCTAATTTCA-TTTAAT---C-AATTGTAAT--GAAGTTgggggggggggggggggggggggggggagagatatgaacctagccacgtaaaacgtaaggaattgaactttattccacatttttaagcgatagttgttatttgtttgttcatccaatcaagtcatgtatttttgttacttg
gi|18 : tttattagggtagagttatttattgtacgatcaaatatacaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcacAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG-CAT--TTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTATT---TTTA--TTTATTTTTTGATGC--ACG------ATAT-----TT-
gi|12 : -----------------T--ATGATTGCAAAT---GTCTCT---------------GTAAA------------ATTATCATTGTATCATG-AAA--AG----T-G------------GGA-ATA--------TTC---A--ATGTA---AGCT--GG----AC----TACTACATGTATAATTAT-AAACAGTTTAA--TTT------GCA----GTGGTGTTGGAAA-GGGGGTGG--------GGGTAGGGG---TACCTCCCCAAACC--------AAAACATA---AAG-------AATTCACCTTT-AC-CCACCTTTTTCAAGCAATAGTGTTTCG-----ATCAAC-----------AAAGTAATCCCGTCTTAAAATAA---AA-TATA-T---TCCAT----TGCC--------------GATGA-TTCC-C-ATTATCTAATTTCA-TTTAAT---C-AATTTTAAC---AAGTCAAA----TTTG--
gi|3 : atatcatttatt-TTAT---ACAACTGCAAA------------ACTATTAGTGTATCATG-AAA--CGACCGT-GATTTC-ATTTTTGGA-ATA--------TTC---A--ATGTA---A------------T----TACTA---------TTAA-AAGGAGTTTGA--TTT------GCACTGAGTGGTTT-------GGGGG-GG--------GGG--G------------------TC--------AAGACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAGT-----G-----ATGAACCGTTGCAGAGCAAAGTAATCCCGTTTT----T-T---CA-TACA-T---TCCAT----TGCC--------------TATCA-TT-C-C-ATTGTTTAATTTCA-TTAAATCTGA-AATtc
gi|10 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGTAAA------------ACTATCAGTGCATCATG-AAA--CA----T-GATTCC-ATTTTG---------------TTC---A--ATGTA---AAC---------TC----TACTA---------CTAT-TAAGAGCTTAA--TTT------GCG----GAGGTGTTGGAACTGGGGGAAG--------GGG--GA-A---T-----------T-----------AATGTAGATAAGTTATCTTAATTGACTCTA-AC-CCAC-CTTTTCGAAT--TATT-----T-----A-----------------AAG----CCCGGTTT----T-T---TA-TATACATATTTCATAGACTATA--------------TATGACTT-C-T-ATATTCTAATTTCA-TTTAAT---C-AGTTT--ATTGGAAGTTAAG----TTTGTTGGAATGTT-------------TATGATTTGT-AAGTCCACT-TTT--------------CCTTTCTT-TTTGTGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|9 : cttgTCATCAGTGCATCATG-AAAAACA----TTGATTCC-ATTTTG---------------TTC---A--ATGTA---AACT---T----AC----TACT-----------CAT-TAAGAGCTTCACATTT------GCA----ATGGTGTTGGAACTGGGGGAAG--------GGG--GAAT---T-----------TCCCTCAACGAAAATGTAGATAAGTTATCTTAA-TGACTCTA-AC-CCACCTTTT----------------------------C-----------GAATTAAGCCCGGTTC----T-T------TATA-A---TACAT----TATTCCTCATAGACTATATATGACTT-C-T-ATATTCTAATTTCA-TTTA-T---C-AGTTT--AT--GAAGTTAAG----TTTGTTGGAATGTTTAT------------TGATTTGTAAGGCCA---CTTT---TCCTT----------TC-TTTTTGTGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTgtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|8 : ttagtcttgctgtacaatac--------AAAACGTA---AGG-------AATTGAACTTT-ATTCCACATTTTT-AAGCGATAGT-----gttgctatccatgcattgtatctaactaactaccatgtcaacattccaataataattcagtgacgatgcataggatatcgaatgtttaataa
gi|13 : agagatcaccagtattgtatacctattttactgccatataatcataaaatccacaaatcttgaacgttgtattacgtatttagatggtatgtataaaatttatgaattactccgtggtgaaattgaggttttttttcttgatgcacgatattgcgtgttgcctgaaacaaaggaaatcacaaatgggtacatatatcatttattcatgattgcaaatttgtcacttttatacagctgtaaaactatcatggtatataaaagtgattttgcaatgctcacgaatgtaagctagaactatataggttaatttttgaagcggttgggggggggggggggagggggggggggggggggggggggggggagagatatgaacctagccacgtGATAGT-----GTTTCGATCAAC-----------AAAGTTGGCCCATTTT----T-T---AACTATA------CCAT----GGCC--------------TATGA-TT-CAC-ATTGTCTAATTTCACTTAATC---ACAATTTTAAT----------------------AAGTGTTCATAA-------------TTT------TCA--TGATTGCCCCCCCCCCCC-CCCTTT-T-TTTTTTTTTGTTATTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTtgttatttgtttgttcatccaatcaagtcatgtatttttgttacttg
gi|15 : ccttacccaccgaCATTTT----T-TAAACA-TAT------CCCAT----TGCT--------------TATGA-TTTC-C-GTTGTCTAATTTCA-ATTAGT---C-ATTTTCAAT--TAAGTTAG-----TTT-------TGTT----GGAA-TATGT------TC----GTTA----TTTGTGACAC-ACCTCACCCAAT-T-TTTTTGTTCGTG--T-AATCTCAGATTTTCT-GCATTAG-AATTTAGTTTgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333333 1 111 11 7777777777777777777 111 1111 111 111 22222222 111111 44444444444444 4444444 111111 6666666666666666666 111111 111 111 11111 11 111111 4444444444444 111111 11111 1 777777777777777777777777777777777777777777777777777777777777777777 333333333333333333 222222222222 1111 1111111111111 111111111111 111111111 11 111111 1111111 77777777777777777777777 111 3333333 1 11 4444444444444 2222222222222 1 111 5555555555555555555555555555555555555555555555555555555555555555555 11111 11111
lowQualScore : 2 2222222 2 33 66666666 0 111 33 1 4444444444444444444 777 4 7777 8 99 6 6 6 6 6 111 1 1 3 2 0 3 8 6 99 111 66 5 5 88888888 77 1 77 5 7777 99999 77 00000000 5 8888 5 99 555555 5 2 5 11111111111111 5 5 5 0 5 77 5 9999999 1 5 66 444444 3333333333333333333 1 111111 555 1 5 666 66 4 66 66 44444 66 66 0 55 4 33 4 55 4 55 4 4 55 4 4 444444 5 5 5 5 9999999999999 5 66 444444 22222 0 99 555555555555555555555555555555555555555555555555555555555555555555 88 5 1 444444444444444444 000000000000 4 4 4444 4 4 6666666666666 777 55 777 777 888888888888 666666666 4 55 66 222222 9999 0 3 8 4444444 2 777 5 11111111111111111111111 5 777 2222222 4 4 1 66 1 4 0000000000000 1 9999 4 1 1111111111111 1 66 9999 9999 8 3 4 66 5 222 0 1111111111111111111111111111111111111111111111111111111111111111111 88888 77 22222 7 8 8
lowQualScore : . ....... . .. ........ . ... .. . ................... ... . .... . .. . . . . . ... . . . . . . . . .. ... .. . . ........ .. . .. . .... ..... .. ........ . .... . .. ...... . . . .............. . . . . . .. . ....... . . .. ...... ................... . ...... ... . . ... .. . .. .. ..... .. .. . .. . .. . .. . .. . . .. . . ...... . . . . ............. . .. ...... ..... . .. .................................................................. .. . . .................. ............ . . .... . . ............. ... .. ... ... ............ ......... . .. .. ...... .... . . . ....... . ... . ....................... . ... ....... . . . .. . . ............. . .... . . ............. . .. .... .... . . . .. . ... . ................................................................... ..... .. ..... . . .
lowQualScore : 5 5555555 5 88 22222222 0 000 88 0 8888888888888888888 555 2 0000 0 22 7 7 7 7 7 777 7 4 0 4 7 2 0 7 22 777 77 7 3 33333333 99 7 99 7 7777 44444 99 77777777 7 0000 7 66 999999 7 1 7 33333333333333 7 0 0 1 0 99 7 0000000 5 7 77 666666 0000000000000000000 7 444444 777 4 0 888 11 4 11 11 88888 11 66 8 11 0 88 0 55 0 55 4 4 44 4 4 444444 0 0 0 0 9999999999999 0 99 444444 55555 0 22 555555555555555555555555555555555555555555555555555555555555555555 77 7 7 666666666666666666 555555555555 0 0 0000 0 0 8888888888888 000 55 000 000 111111111111 000000000 0 11 77 888888 4444 1 9 9 4444444 6 888 0 11111111111111111111111 0 555 5555555 4 4 0 66 1 7 7777777777777 0 4444 4 0 9999999999999 7 11 4444 4444 9 3 4 99 1 555 4 9999999999999999999999999999999999999999999999999999999999999999999 00000 77 22222 3 0 0
consensus : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTNT---ATGCA-A------A--AC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTT---TTTAAATAAT-TGATATA-NAACTTT---C-GATCAAGC-TA------T-AT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAA------N------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATA--------TTC---A--AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GC----AGTGGTGTTGGAAC-GGG-------GGGGGGG---GGG-GT------------TC---------AAA-ACGTA---AAG-------AATTGACC-TTTAC-CCACNTTTTTCAAGCGATAGTGTTTC-ATC--------AACGAAGTAANCCCGTTTT----T-TNA-T----A------TATTCC--ATTGCC----TAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTT-GGA-AT--GTTCGTAA-TGA-----------TTTGT-A-AGT-C--AC-TTT-C-CC--CCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Reference ( family-3778 ) : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTNT---ATGNA--------A--AC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTN-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--TA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTT-ACTTTAAATAAT-TGATATA-NAACTTT---C-GATCAAGC-T-------T-AT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAA------N------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATA--------TTC---A--AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GC----AGTGGTGTTGGAAC-GGG-------GGNGGGG---GGG-GT------------TC---------AAA-ACGTA---AAG-------AATTGACC-TTTAC-CCACGTTTTTCAAGCGATAGTGTTT--ATC--------AACGAAGTAANCCCGTTTT----T-TNA-T----A------TATCCC--ATTGCC----TAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAAGTTTG---GGA-AT--GTTCGTAATTGA-----------TTTGT-A-GGT-C--AT-TTTGCNCC--CCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTGG-AATTTAGTTT
gi|1 : ACACGATTTCAAAAAGTC-CGCCATCGT-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AGCTTTGGCAT-CA--------C--AC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTC-TACTC-ATTTTAAAAATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAAGCTT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTC-GATTTC-CCGT--A-T-T-TAGCAA--GGAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTA-TAAATGCACGA-TTAGGG-TAAAA---AAAAAAAATTCGC-GAGTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTTTACTTTAAATAAT-TGATATA-CAACTTT---C-GATCAAGC-TAAAAA--T-AT-TAT--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATT--GCCAAAAT-TGT--AA--ACCCT----TTTAACTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-CAT--TTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTTATTTTTTTTTTTTT-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAA------T------ATAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCTCTTTTAT------GCAACTGCAAA------------ATT-ATTAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATA--------TTC---A--AT---GTA---AGCAAG----AC----TACT---------GTT-AT-AAAGAGTTTGA--TTT------GC----AGTGATTTTGGAAC-GGG-------GGTGGGG---GGATGT------------TC---------AAG-ACGTA---AAG-------AACTGACC-TTTAC-CCATATTTTTCAAGCGATAGTG-----ATG--------AACGAAGTAATCCCGTTTT----T-TCA-T----A------TAATCC--ATTGTC----TAT----GA-TT-C-CATTGTCTAATTTCATTAAGTAA--ATTTTAAT--GAAGTTAGATTTG---AAA-AT--GTTCGTAA--GAACTAGGTACAGTTTCTAA-AGT-CAAATGTTTGTATCATTGCCCCCCCGTC-TTTTG-TGCTCATT--TTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|10 : CTGTAAA------------ACT-ATCAGTGCATCATG-AAA----CAT-GATTCC-ATTTTG---------------TTC---A--AT---GTA---AACT-------C----TACT---------ACT-AT-TAAGAGCTTAA--TTT------GC----GGAGGTGTTGGAACTGGG-------GGAAGGG---GGA-AT------------T------------A-ATGTAGATAAGTTATCTTAATTGACT-CTAAC-CCACCTTTT-----CGA-ATTATTT--A------------------AAGCCCGGTTT----T-TTA-TATACA------TATTTC--ATAGACTATATAT----GACTT-C-TATATTCTAATTTCATTTAATCA--GTTT--ATTGGAAGTTAAGTTTGTT-GGA-AT--GTT--TA--TGA-----------TTTGT-A-AGTCC--AC-TTT------------TCCTTTCTTTTTG-TGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|11 : cttgTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTA-TG--CGCACGA-TTGGGG-TAAAA---A--------TAGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATG-AA-TGTTTTCATTTAGTA--ATTGTT-A----AAAGACT-TGATATC-CAACTTC------ATCAAGC-TAAC----T-ATAT-T--A--------TTA---------AG---GGATGC-AT-CGACGTCAGGACAG-TC--ACCACCAT-T----AA--ACCCC----TTTTATCT--ACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTA--TTCTTT-TTTTTTTTTTTTG-ATGC--ACG------ATAT-----TT-gtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|12 : -----------------T--ATGATT-GCA-AA--TGTCT-----------------CTGTAAA------------ATT-ATCATTGTATCATG-AAA----AG-------------TGGGA-ATA--------TTC---A--AT---GTA---AGCTGG----AC----TACTACATGTATAATT-AT-AAACAGTTTAA--TTT------GC----AGTGGTGTTGGAAA-GGG-------GGTGGGGGTAGGG-GTACCTCCCCAAA-CC---------AAA-ACATA---AAG-------AATTCACC-TTTAC-CCACCTTTTTCAAGCAATAGTGTTTCGATC--------AACAAAGTAATCCCGTCTTAAAATAAAA-T----A------TATTCC--ATTGCC----GAT----GA-TTCC-CATTATCTAATTTCATTTAATCA--ATTTTAAC---AAGTCAAATTTG---
gi|13 : atatcatttattC-CTTAC-CCAC------CGAG--ATAGTGTTTCGATC--------AACAAAGTTGGCCCATTTT----T-TAA-C-----------TATACC--ATGGCC----TAT----GA-TT-CACATTGTCTAATTTCACTTAATCACAATTTTAAT--------AAGT--------------GTTCATAATT-------------TTCAT-G--------AT-TGCCCCCC--CCCCCCCCCTTT-TTTTT-TTTTTGTTATTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTtc
gi|14 : TTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAATgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
gi|14 : TTA-TG--C--ACGA-TTAGGG-TAAAAAAAAA------TTCGC-GATTAGGATAAAGTTAT-TTATT-GT---ATCAAATATGCAA-TGTTTTCATTT--TAT-ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|15 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTT----T-TAAAC----A------TATCCC--ATTGCT----TAT----GA-TTTC-CGTTGTCTAATTTCAATTAGTCA--TTTTCAAT--TAAGTTAGTTTTGTT-GGA-ATATGTTCGT---T-A-----------TTTGT-G-A-------------CACA--CCTCACCCAAT--TTTTT-TGTTCGTG--T-AATCTCAGATTTTCT-GCATTAG-AATTTAGTTT
gi|16 : aaTAAT-TGATATA-AAACTTT---C-ATTCAAGC-C-------T------T--AAAGGGAACTTGTT--C---TAGTAGAGATGCGTT-CGACGT----AGAGATC--ACCAATGT-TGT--AA--ACCC-----TTTTATTT--G---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG-GAT--TTgtgtatccattatgatctaacaattccatgaacaattcagtgttgatggctaccatattaacaa
gi|17 : A--TA-GGC-ATGTCCGCTT-CCAATT-TACTC-ATG---GAAATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAt
gi|18 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG-CAT--TTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTAT----TTT-TATTTATTTTTTG-ATGC--ACG------ATAT-----TT-
gi|19 : T-A--AATGACTATAT---GGAGATTTTATTTC-GATCTC-CCAT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATTGAAGTTTTG
gi|2 : ACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AGCTAT---ATGTAGA------A--ACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATATTTGATTTCCGTCTTCA----------------------ATTAAATGGGAAGCGT-TATTTTT-A--AATGACTATAT---GAGGATTTTATTTA-GATTTC-CCAT--A-T-T-TAGCAA--GAAAAC--CC-TCC-------AAGTTTTGCTA-----TA--GA--------T-C-G--GGA-GTGTTTG-TG--CAC----------------------------------GATTAGGGTAAAGTTTT-TT-TC-G--CGATCAAATATGCAA-TATTTTCATTT--TAT-ATTGTT-----TACATAAT-TGATATA-GAACTTT---C-AATTAAGC-T-------TTAT-T-TT-AAAGAGAATGTATG--C---TAG---AGATGTGAT-CGACGTAATGAGAGATC--ATCAACAT-TGT--AA---CCTT----TTTTAATT--GCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG-TAT--TTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTATTTT------TTCTCTCTCTTG-ATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAA------TTAAATCACAAAAGTGTT---TA-C-----TT---ACCGG-----------------T--ATGATT-GTA-AATTTGTCACT--------------ACTGCAAA------------ACT-ATTAGCATATCATG-AAA----CGT-GATTTT-ATTTTGGGA-ATA--------TTC---A--AT---GTACTAAGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------G----------------AAC-GGA-------GAGGGTG---------------------TC---------AAAGACGTA---AAG-------AATTTACC-TTTAC-CCATATTTT-CAAGGGATAGTGTTTTGATG--------AACGAAGTAATCCCGTTTT----T-TTAAT----A------TATCCC--ATTGCT----TAT----GA-TT-C-CATTGTCTAATTTAAATAAATCA--ATGTTAAT--GAAGTCAGATTTGTTTGAATAT--GTTCGTAA---A-----------TT-GT-A----------------TCC--CCCCTCCC-------TTG-TGTTCA-T--TTAATTTgaatgattagggtccaaactccccgtcgatcaa
gi|3 : CACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTGT---GTAGA--------A--AC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAATTATATT---------AAATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAAGCGT-CAGTTTT-A--AATGAGTGTAT---GGAGATTTTAGTAA-GGTTCC-CC-----------AACAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTAC-----A--GA--------T-T-T--GGA-ATGCTT---------------------TAAAA---AA------ATCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATAAAATATGCAATTGTTTTCATTT--TAT-ATTG-----TTTAGATAAT-TGATATA-GAACTTT---C-GATCAAGCTT-------T-AT-T-TTAAAAGGGAATGTATGCTC---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGTTCAA--ACTCTTCAGTTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG-TAT--TTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Aaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|3 : TTAT------ACAACTGCAAA------------ACT-ATTAGTGTATCATG-AAACGACCGT-GATTTC-ATTTTTGGA-ATA--------TTC---A--AT---GTA-------------AT----TACT---------ATT-AA-AAGGAGTTTGA--TTT------GCACTGAGTGGT-TTGG-----------------GGGG---GGG-GG------------TC---------AAG-ACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAGTGATG--AACCGTTGCAGAGCAAAGTAATCCCGTTTT----T-TCA-T----A------CATTCC--ATTGCC----TAT----CA-TT-C-CATTGTTTAATTTCATTAAATCattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|4 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTT---A-GCACACTCTCCAGCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATT-CACTCCATT---AAAATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGATACGTTCAGTTTT-ACAAATTACTATATTGGGAAGATTTTATTTC-GATTTC-CCGT--AGTAT-TAGTCA--GAAGCT--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTAATG--CGCACGA-TTGGGGCTAAGA---AA------T-AGC-GATTAGG-TAAAGT-AT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTT--TATGATCG----CTTTAAATAATGTGATATACCAACGTTATGCGGATCAAGC-TATTATAAT-GT-TAT--AAAAGGACTTTATG--C---TAGT--AGATG-GATACGACGTCGTGAGAGATCAAACAAACATGTGT--AAGTACCCC----TTTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGTTAT--TTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTA--TTCTTT-TTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTAT------A------ATAAA-----T---TACC-----TC---ACCGT-----------------T---TGATT--CG-AAATTGT-GTTCTTATAATACAGCAACTGCGAA------------AC--ATC-GTGTATCATGAAAA----CGT-GATTTCAATCTTGGG----A--------TTT---ATCAT---GTA---AGCAAGAAATACATGGTACT---------ATT-ATAAAAGAGTTTGAC-TTT------GC----AGTGGTTTTGGAAC-GGG-------GTGGGGG---Gtgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAA-TGT-CAGTTTTAA--AATGATTATCT---TGAGA-TTTATTTA-GATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCC----TCGAAG-TTTGCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTTT-TG--CG--CGATTTAGGG-TAAAGTT-TT------TTCGCTGATTAGGGTAAAGTTATATTATT-GTACAATCAAATATGCAA--GTTTTCATTT--TAT-TTC--------------------TATA-AAACTTT---C-TTTCAAGC------------T-T-T--AAAGGAAATTTAAG--CTTATAG---AGATGCGAT-CAACAC----AGAGA----ATCAATAT-TGT--AA--AACTT----CTTTATTT--GCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG-TA---TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C--------CT-TTTTTTTTTCTTG-ATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAA------G------G-GAA-----T---CA-C-----AA---AAGGG-----------------TACATAATTAATATAATTTA-----TTTAT------G--ATGACAAAAATTGTCACTTTACT-ATCAGTGTATCGTG-AAA----CGT-GATAAG-ATTTTGGGACAGAAGAATTCTCTC---A--ATTACG-A---AG-TAG----AT----TACT---------GTT--T-AAAtg
gi|6 : aaacggactagggtaaagtgcgagatcaaatgATTAGGGTAGAGTTAT-TTATT-GTACGATCAAATATACAA-TGTTa
gi|6 : tttATGAGAT-CGATGT----AGAGATC--ACCAAT-------------------------------------TGATCATAAAAT-TTCATAAATCTTGAA-CGTT--GCA-T--CACG-TATATTTGGATG-TTA-------A-AATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGATTTA---------TTTTTCTTG-ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAA------G------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATT-TCA-AATTTGTCACTTT------------------AA------------ACT-ATTAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATG--------TTC---A--AT---GTA---ACCTCG----AC----TACA---------ATT-AT-ATTGAGTGTAA--TTTTCAGTCAC----AGTGGTGTTCGAAC-GGGAGTGGCCGGGGGTG---GGG-GTGACTTTCCCCAACC---------AAA-ACGTA---GAG-------AATTGACC-TTTAC-CAACATTTA-CAAGCGATAGTGTTTCCATC--------AATGAAGTAAACTCGTTGT----T-TAA-T----A------TATCCC--ACTGCC----TAT----GA-TTCC-CATTGTCTAATTTCATTTAATCA--ATTGTAAT--GAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcaccaattgatcataaaatttcataaatcttgaacgttgcatcacgtatatttggatgttaaaatttatggcttattccgtggtgaaattgacggcgatttatttttcttgatgcacgatatcgatattacgtgttgcctgaaacaaaggaaatcacttgaaacgggcacatatgtcatttatttatgatttcaaatttgtcactttaaactattagtgtatcatgaaacgtgatttcattttgggaatgttcaatgtaacctcgactacaattatattgagtgtaattttcagtcacagtggtgttcgaacgggagtggccgggggtgggggtgactttccccaaccaaaacgtagagaattgacctttaccaacatttacaagcgatagtgtttccatcaatgaagtaaactcgttgtttaatatatcccactgcctatgattcccattgtctaatttcatttaatcaattgtaatgaagtt
gi|7 : tttattagggtagagttatttattgtacgatcaaatatacaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaTATTTATGATTTC-ACTTTAA-T-TATAGCA---GAA-ACTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTT
gi|8 : tgattagtttttgaAGAGATC--ACCAGTAT-TGT--AT--ACCTA----TTTTACTG--CCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG-TAT--TTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG--------------TTTTTTTTCTTG-ATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATC------ACAAA-----TGGGTA-CATATATC---ATTTA-----------------TTCATGATT-GCA-AATTTGTCACTTTTAT------ACAGCTGTAAA------------ACT-ATCATGGTAT-ATA-AAA-----GT-GATTTT-------GCA-ATG--------CTCACGA--AT---GTA---AGCTAG----A------ACT---------A-T-AT-----AGGTTAATTTTT------GA----AGCG--GTTGGGGG-GGG-------GGGGGGG---AGG-Ggggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|8 : ---------AAA-ACGTA---AGG-------AATTGAAC-TTTATTCCACATTTTT-AAGCGATAGTTGTT--ATggggggggggggggggggggggggagagatatgaacctagccacgtaaaacgtaaggaattgaactttattccacatttttaagcgatagttgttatttgtttgttcatccaatcaagtcatgtatttttgttacttg
gi|9 : agagatcaccagtattgtatacctattttactgccatataatcataaaatccacaaatcttgaacgttgtattacgtatttagatggtatgtataaaatttatgaattactccgtggtgaaattgaggttttttttcttgatgcacgatattgcgtgttgcctgaaacaaaggaaatcacaaatgggtacatatatcatttattcatgattgcaaatttgtcacttttatacagctgtaaaactatcatggtatataaaagtgattttgcaatgctcacgaatgtaagctagaactatataggttaatttttgaagcggttgggggggggggggggagggggggggggggggggggggggggggagagatatgaacctagccacgtTACAAT------------ACTCATCAGTGCATCATG-AAAAA--CATTGATTCC-ATTTTG---------------TTC---A--AT---GTA---AACT------------TACT---------ACTCAT-TAAGAGCTTCACATTT------GC----AATGGTGTTGGAACTGGG-------GGAAGGG---GGA-AT------------TTCCCTCAACGAAA-ATGTAGATAAGTTATCTTAAT-GACT-CTAAC-CCACCTTTT-------------------------------CGAATTAAGCCCGGTTC----T-TTA-T----AATACATTATTCCTCATAGAC----TATATATGACTT-C-TATATTCTAATTTCATTTA-TCA--GTTT--AT--GAAGTTAAGTTTGTT-GGA-AT--GTTT---ATTGA-----------TTTGT-AAGGC-C--AC-TTT------------TCCTTTC-TTTTTGTGTTCATT--T-AATCTCGAATTTTCT-GCAGTGG-AATTTAGTttgtttgttcatccaatcaagtcatgtatttttgttacttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333333 1 111 11 66666666666666666 111 1111 111 111 22222222 111111 44444444444444 22222222 111111 555555555555555555555 111111 111 111 11111 11 111111 4444444444444 111111 11111 1 777777777777777777777777777777777777777777777777777777777777 333333333333333333 222222222222 1111 1111111111111 111 111111111111 111111111 11 4444444444444444444444444444444444 1111111 111111111111111111111111111111111111111111111111 111 3333333 11 333333333333333333 1 111111 1111 1 111 11 111111111111111111111111111111111111111111111111111111111111 11111
lowQualScore : 2 2222222 2 33 66666666 0 111 33 1 88888888888888888 777 4 7777 8 99 6 6 6 6 6 111 1 1 3 2 0 3 8 6 99 111 77 5 5 88888888 77 1 77 5 7777 0 77 77 00000000 5 8888 5 99 555555 5 2 5 11111111111111 5 5 5 0 5 5 77777777 1 555 66 444444 000000000000000000000 1 111111 555 1 5 666 66 4 66 66 44444 66 66 0 55 4 33 4 55 4 55 4 4 55 4 4 444444 5 5 5 5 9999999999999 5 66 444444 22222 0 99 555555555555555555555555555555555555555555555555555555555555 88 5 1 444444444444444444 000000000000 4 4 4444 4 4 6666666666666 222 777 777 888888888888 666666666 4 4 00 3333333333333333333333333333333333 3 4 4444444 8 222222222222222222222222222222222222222222222222 5 777 2222222 4 4 22 66 4 666666666666666666 1 9999 4 1 3 222222 9999 66 8888 8 3 4 66 5 222 0 00 44 88 888888888888888888888888888888888888888888888888888888888888 77 66666 8 8
lowQualScore : . ....... . .. ........ . ... .. . ................. ... . .... . .. . . . . . ... . . . . . . . . .. ... .. . . ........ .. . .. . .... . .. .. ........ . .... . .. ...... . . . .............. . . . . . . ........ . ... .. ...... ..................... . ...... ... . . ... .. . .. .. ..... .. .. . .. . .. . .. . .. . . .. . . ...... . . . . ............. . .. ...... ..... . .. ............................................................ .. . . .................. ............ . . .... . . ............. ... ... ... ............ ......... . . .. .................................. . . ....... . ................................................ . ... ....... . . .. .. . .................. . .... . . . ...... .... .. .... . . . .. . ... . .. .. .. ............................................................ .. ..... . .
lowQualScore : 5 5555555 5 88 22222222 0 000 88 0 55555555555555555 555 2 0000 0 22 7 7 7 7 7 777 7 4 0 4 7 2 0 7 22 777 00 7 3 33333333 99 7 99 7 7777 7 99 99 77777777 7 0000 7 66 999999 7 1 7 33333333333333 7 0 0 1 0 7 77777777 5 999 77 666666 444444444444444444444 7 444444 777 4 0 888 11 4 11 11 88888 11 66 8 11 0 88 0 55 0 55 4 4 44 4 4 444444 0 0 0 0 9999999999999 0 99 444444 55555 0 22 555555555555555555555555555555555555555555555555555555555555 77 7 7 666666666666666666 555555555555 0 0 0000 0 0 8888888888888 555 000 000 111111111111 000000000 0 0 66 2222222222222222222222222222222222 9 4 4444444 9 444444444444444444444444444444444444444444444444 0 555 5555555 4 4 99 88 4 444444444444444444 0 4444 4 0 3 888888 4444 11 9999 9 3 4 99 1 555 9 99 22 33 333333333333333333333333333333333333333333333333333333333333 77 33333 0 0
consensus : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTNTGTGCA--AA---------AC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GC----AGT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACC-TTTAC-CCACNTTTTTCAAGCGATAG-T--------GTTT-CGATNAACGAAGTAANCCCGTTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-C-CA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Reference ( family-3778 ) : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTNTATGCA--AA---------AC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAN------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GC----AGT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACC-TTTAC-CCACNTTTTTCAAGCGATAG-T--------GTTT-C-ATCAACGAAGTAANCCCGTTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-T-CA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
gi|1 : ACACGATTTCAAAAAGTC-CGCCATCGT-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AGCTTTG-GCATCAC---------AC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTC-TACTC-ATTTTAAAAATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAAGCTT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTC-GATTTC-CCGT--A-T-T-TAGCAA--GGAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTA-TAAATGCACGA-TTAGGG-TAAAA---AAAAAAAATTCGC-GAGTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTTACTTTAAATAA-T-TGATATA-CAACTTT---C-GATCAAGCT------AAAAATAT-TAT--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATT--GCCAAAAT-TGT--AA--ACCCT----TTTAACTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-CAT--TTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTTATTTTTTTTTTTTT-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAT------ATAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCTCTTTTAT------GCAACTGCAAA------------ATT-ATTAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCAAG----AC----TACT---------GTT-AT-AAAGAGTTTGA--TTT------GC----AGT-------------------GATTTTGGAAC-GGG-------GGTGGGGG--GATG------------T------------T-------C--------AAG-ACGTA---AAG-------AACTGACC-TTTAC-CCATATTTTTCAAGCGATAG-T--------G------ATGAACGAAGTAATCCCGTTTT----T-TCA-TA------TA----ATCC--ATTGTCTAT----GA-TT-C-CATTGTCTAATTTCATTAAGTAA--ATTTTAAT--GAAGTTAGATTTG--AAA--ATGTTCGTAA-GAACTAGGTACAGTTTCTAAAG-T-CAAATGTTTGTATCATTGCCCCCCCGTC-TTTTG-TGCTCATT--TTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|10 : CTGTAAA------------ACT-ATCAGTGCATCATG-AAA----CAT-GATTCC-ATTTTG---------------TTCA---AT---GTA---AACT-------C----TACT---------ACT-AT-TAAGAGCTTAA--TTT------GC----GGA-------------------GGTGTTGGAACTGGG-------GG-AAGGG--GGAA------------T------------T------------------A-ATGTAGATAAGTTATCTTAATTGACT-CTAAC-CCACCTTTT-----CGA-AT-T--------ATTT-----------A--AAGCCCGGTTT----T-TTA-TA------TACATATTTC--ATAGACTATATATGACTT-C-TATATTCTAATTTCATTTAATCA--GTTT--ATTGGAAGTTAAGTTTGTTGGA--ATGTTT---ATGA-----------TTTGT-AAG-TCCA----CTT---T--------TCCTTTCTTTTTG-TGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|11 : cttgTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTA-TG--CGCACGA-TTGGGG-TAAAA---A--------TAGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATG-AA-TGTTTTCATTTAGT-A--ATTG---TTAAAAGACT-TGATATC-CAACTTC------ATCAAGCT------AAC--TATAT-T--A--------TTA---------AG---GGATGC-AT-CGACGTCAGGACAG-TC--ACCACCAT-T----AA--ACCCC----TTTTATCT--ACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTA--TTCTTT-TTTTTTTTTTTTG-ATGC--ACG------ATAT-----TT-gtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|12 : -----------------T--ATGATT-GCA-AA--TGTCT-----------------CTGTAAA------------ATT-ATCATTGTATCATG-AAA----AG-------------TGGGA-ATA--------TTCA---AT---GTA---AGCTGG----AC----TACTACATGTATAATT-AT-AAACAGTTTAA--TTT------GC----AGT-------------------GGTGTTGGAAA-GGG-------GGTGGGGGTAGGGG------------TACCTCCCCAAA-C-------C--------AAA-ACATA---AAG-------AATTCACC-TTTAC-CCACCTTTTTCAAGCAATAG-T--------GTTT-CGATCAACAAAGTAATCCCGTCTTAAAATAAAA-TA------TA----TTCC--ATTGCCGAT----GA-TTCC-CATTATCTAATTTCATTTAATCA--ATTTTAAC---AAGTCAAATTTGT
gi|13 : atatcatttattC-CTTAC-CCACC--------GAGATAG-T--------GTTT-CGATCAACAAAGTTGGCCCATTTT----T-TAACTA------TA------CC--ATGGCCTAT----GA-TT-CACATTGTCTAATTTCACTTAATCACAATTTTAAT---AAGT---GTTCAT---A--ATTTTC---ATGA-----------TT------G-C-C-----------CCCCCCCCCCCCCTTT-TTTTT-TTTTTGTTATTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTc
gi|14 : TTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAATgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
gi|14 : TTA-TG--C--ACGA-TTAGGG-TAAAAAAAAA------TTCGC-GATTAGGATAAAGTTAT-TTATT-GT---ATCAAATATGCAA-TGTTTTCATTTTAT-ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|15 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTT----T-TAAACA------TA----TCCC--ATTGCTTAT----GA-TTTC-CGTTGTCTAATTTCAATTAGTCA--TTTTCAAT--TAAGTTAGTTTTGTTGGAATATGTTCGT--T-A-----------TTTGT-GA----CA-------------CACCTCACCCAAT-TTTTT-TGTTCG-T--GTAATCTCAGATTTTCT-GCATTAG-AATTTAGTTT
gi|16 : aaTAA-T-TGATATA-AAACTTT---C-ATTCAAGCC---------------T-T--AAAGGGAACTTGTT--C---TAGTAGAGATGCGTT-CGACGT----AGAGATC--ACCAATGT-TGT--AA--ACCC-----TTTTATTT--G---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG-GAT--TTgtgtatccattatgatctaacaattccatgaacaattcagtgttgatggctaccatattaacaa
gi|17 : A--TA-GGC-ATGTCCGCTT-CCAATT-TACTC-ATG---GAAATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAt
gi|18 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG-CAT--TTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTAT----TTT-TATTTATTTTTTG-ATGC--ACG------ATAT-----TT-
gi|19 : T-A--AATGACTATAT---GGAGATTTTATTTC-GATCTC-CCAT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATTGAAGTTTTG
gi|2 : ACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AGCTATATGTAG-AA---------ACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATATTTGATTTCCGTCTTCA----------------------ATTAAATGGGAAGCGT-TATTTTT-A--AATGACTATAT---GAGGATTTTATTTA-GATTTC-CCAT--A-T-T-TAGCAA--GAAAAC--CC-TCC-------AAGTTTTGCTAT-----A--GA--------T-C-G--GGA-GTGTTTG-TG--CAC----------------------------------GATTAGGGTAAAGTTTT-TT-TC-G--CGATCAAATATGCAA-TATTTTCATTTTAT-ATTGTTT-----ACATAA-T-TGATATA-GAACTTT---C-AATTAAGCT------T----TAT-T-TT-AAAGAGAATGTATG--C---TAG---AGATGTGAT-CGACGTAATGAGAGATC--ATCAACAT-TGT--AA---CCTT----TTTTAATT--GCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG-TAT--TTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTATTTT------TTCTCTCTCTTG-ATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAATTAAATCACAAAAGTGTT---TA-C-----TT---ACCGG-----------------T--ATGATT-GTA-AATTTGTCACT--------------ACTGCAAA------------ACT-ATTAGCATATCATG-AAA----CGT-GATTTT-ATTTTGGGA-ATA--------TTCA---AT---GTACTAAGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------G-----------------------------------AAC-GGA-------GA-GGGTG-------------------------------T-------C--------AAAGACGTA---AAG-------AATTTACC-TTTAC-CCATATTTT-CAAGGGATAG-T--------GTTT-TGATGAACGAAGTAATCCCGTTTT----T-TTAATA------TA----TCCC--ATTGCTTAT----GA-TT-C-CATTGTCTAATTTAAATAAATCA--ATGTTAAT--GAAGTCAGATTTGTTTGAATATGTTCGTAA--A------------TTGT-A-----------------TCCCCCCTCCC--------TTG-TGTTCA-T--TTAATTTgaatgattagggtccaaactccccgtcgatcaa
gi|3 : CACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AGCTGTGTA-G--AA---------AC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAATTATATT---------AAATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAAGCGT-CAGTTTT-A--AATGAGTGTAT---GGAGATTTTAGTAA-GGTTCC-CC-----------AACAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCT---A--CA--GA--------T-T-T--GGA-ATGCTT---------------------TAAAA---AA------ATCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATAAAATATGCAATTGTTTTCATTTTAT-ATTG--T---TTAGATAA-T-TGATATA-GAACTTT---C-GATCAAGCT------T----TAT-T-TTAAAAGGGAATGTATGCTC---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGTTCAA--ACTCTTCAGTTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG-TAT--TTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Aaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|3 : TTAT------ACAACTGCAAA------------ACT-ATTAGTGTATCATG-AAACGACCGT-GATTTC-ATTTTTGGA-ATA--------TTCA---AT---GTA-------------AT----TACT---------ATT-AA-AAGGAGTTTGA--TTT------GCACTGAGT-------------------GGT-TTGG----GGG-------GG-GGGG--------------------------------T-------C--------AAG-ACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAG-TGATGAACCGTTG-C-A-GAGCAAAGTAATCCCGTTTT----T-TCA-TA------CA----TTCC--ATTGCCTAT----CA-TT-C-CATTGTTTAATTTCATTAAATCattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|4 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTTA-GCA--CACTCTCCAGCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATT-CACTCCATT---AAAATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGATACGTTCAGTTTT-ACAAATTACTATATTGGGAAGATTTTATTTC-GATTTC-CCGT--AGTAT-TAGTCA--GAAGCT--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTAATG--CGCACGA-TTGGGGCTAAGA---AA------T-AGC-GATTAGG-TAAAGT-AT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTTTATGATCG-CT---TTAAATAA-TGTGATATACCAACGTTATGCGGATCAAGCTATTATAA----TGT-TAT--AAAAGGACTTTATG--C---TAGT--AGATG-GATACGACGTCGTGAGAGATCAAACAAACATGTGT--AAGTACCCC----TTTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGTTAT--TTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTA--TTCTTT-TTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTATA------ATAAA-----T---TACC-----TC---ACCGT-----------------T---TGATT--CG-AAATTGT-GTTCTTATAATACAGCAACTGCGAA------------AC--ATC-GTGTATCATGAAAA----CGT-GATTTCAATCTTGGG----A--------TTTATC-AT---GTA---AGCAAGAAATACATGGTACT---------ATT-ATAAAAGAGTTTGAC-TTT------GC----AGT-------------------GGTTTTGGAAC-GGG-------GT-GGGGG--Gtgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAA-TGT-CAGTTTTAA--AATGATTATCT---TGAGA-TTTATTTA-GATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCC----TCGAAG-TTTGCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTTT-TG--CG--CGATTTAGGG-TAAAGTT-TT------TTCGCTGATTAGGGTAAAGTTATATTATT-GTACAATCAAATATGCAA--GTTTTCATTTTAT-TTC---------------------TATA-AAACTTT---C-TTTCAAGC--------------T-T-T--AAAGGAAATTTAAG--CTTATAG---AGATGCGAT-CAACAC----AGAGA----ATCAATAT-TGT--AA--AACTT----CTTTATTT--GCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG-TA---TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C--------CT-TTTTTTTTTCTTG-ATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAAG------G-GAA-----T---CA-C-----AA---AAGGG-----------------TACATAATTAATATAATTTA-----TTTAT------G--ATGACAAAAATTGTCACTTTACT-ATCAGTGTATCGTG-AAA----CGT-GATAAG-ATTTTGGGACAGAAGAATTCTCTCA---ATTACG-A---AG-TAG----AT----TACT---------GTT--T-AAAtg
gi|6 : aaacggactagggtaaagtgcgagatcaaatgATTAGGGTAGAGTTAT-TTATT-GTACGATCAAATATACAA-TGTTa
gi|6 : tttATGAGAT-CGATGT----AGAGATC--ACCAAT-------------------------------------TGATCATAAAAT-TTCATAAATCTTGAA-CGTT--GCA-T--CACG-TATATTTGGATG-TTA-------A-AATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGATTTA---------TTTTTCTTG-ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAAG------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATT-TCA-AATTTGTCACTTT------------------AA------------ACT-ATTAGTGTATCATG-AAA----CGT-GATTTC-ATTTTGGGA-ATG--------TTCA---AT---GTA---ACCTCG----AC----TACA---------ATT-AT-ATTGAGTGTAA--TTTTCAGTCAC----AGT-------------------GGTGTTCGAAC-GGGAGTGGCCGG-GGGTG--GGGG------------TGACTTTCCCCAAC-------C--------AAA-ACGTA---GAG-------AATTGACC-TTTAC-CAACA-TTTACAAGCGATAG-T--------GTTTCC-ATCAATGAAGTAAACTCGTTGT----T-TAA-TA------TA----TCCC--ACTGCCTAT----GA-TTCC-CATTGTCTAATTTCATTTAATCA--ATTGTAAT--GAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcaccaattgatcataaaatttcataaatcttgaacgttgcatcacgtatatttggatgttaaaatttatggcttattccgtggtgaaattgacggcgatttatttttcttgatgcacgatatcgatattacgtgttgcctgaaacaaaggaaatcacttgaaacgggcacatatgtcatttatttatgatttcaaatttgtcactttaaactattagtgtatcatgaaacgtgatttcattttgggaatgttcaatgtaacctcgactacaattatattgagtgtaattttcagtcacagtggtgttcgaacgggagtggccgggggtgggggtgactttccccaaccaaaacgtagagaattgacctttaccaacatttacaagcgatagtgtttccatcaatgaagtaaactcgttgtttaatatatcccactgcctatgattcccattgtctaatttcatttaatcaattgtaatgaagtt
gi|7 : tttattagggtagagttatttattgtacgatcaaatatacaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaTATTTATGATTTC-ACTTTAA-T-TATAGCA---GAA-ACTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTT
gi|8 : tgattagtttttgaAGAGATC--ACCAGTAT-TGT--AT--ACCTA----TTTTACTG--CCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG-TAT--TTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG--------------TTTTTTTTCTTG-ATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATCACAAA-----TGGGTA-CATATATC---ATTTA-----------------TTCATGATT-GCA-AATTTGTCACTTTTAT------ACAGCTGTAAA------------ACT-ATCATGGTAT-ATA-AAA-----GT-GATTTT-------GCA-ATG--------CTCACGAAT---GTA---AGCTAG----A------ACT---------AT--AT-A----GGTTAA--TTTTTGAA-GC----GGTTGGGGGGGGGGGGGGGAGGGGGGGGGGGGG-GGG-------GG-GGGGG--GGGGAGAGATATGAACC------------TAGCCACGT--------AAA-ACGTA---AGG-------AATTGAAC-TTTATTCCACATTTTT-AAGCGATAGTT--------GTTgggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|9 : TACAAT------------ACTCATCAGTGCATCATG-AAAAA--CATTGATTCC-ATTTTG---------------TTCA---AT---GTA---AACT------------TACT---------ACTCAT-TAAGAGCTTCACATTT------GC----AAT-------------------GGTGTTGGAAC-TGG-------GG-GAAGG--GGGAAT----------T------------T-------CCCTCAACGAAA-ATGTAGATAAGTTATCTTAAT-GACT-CTAAC-CCACCTTTT---------------------------------CGAATTAAGCCCGGTTC----T-TTA-TAATACATTA----TTCCTCATAGACTATATATGACTT-C-TATATTCTAATTTCATTTA-TCA--GTTT--AT--GAAGTTAAGTTTGTTGGA--ATGTT--TATTGA-----------TTTGT-AAGGC-CA----CTT---TTCCT--------TTC-TTTTTGTGTTCATT--T-AATCTCGAATTTTCT-GCAGTGG-AATTTAGTatttgtttgttcatccaatcaagtcatgtatttttgttacttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333333 1 111 11 1 5555555555555555 111 1111 111 111 11111 22222222 111111 44444444444444 22222222 111111 555555555555555555555 111111 111 111 11111 11 111111 4444444444444 111111 11111 1 777777777777777777777777777777777777777777777777777777777777 333333333333333333 222222222222 1111111111111 111 222222222222 111111111 11 4444444444444444444444444444444444 1111111 111111111111111111111111111111111111111111 111 3333333 11 222222222222 111111 1111 1 111 11 11111111111111111111111111111111111111111111111111111111111 11111
lowQualScore : 2 2222222 2 33 66666666 0 111 33 0 3333333333333333 3 777 4 7777 8 99 6 6 6 6 6 111 1 1 3 2 0 3 8 6 99 111 77 5 5 88888888 77 1 77 5 7777 33333 77 00000000 5 8888 5 99 555555 5 2 5 11111111111111 5 5 5 0 5 5 77777777 1 555 66 444444 000000000000000000000 1 111111 555 1 5 666 66 4 66 66 44444 66 66 0 55 4 33 4 55 4 55 4 4 55 4 4 444444 5 5 5 5 9999999999999 5 66 444444 22222 0 99 555555555555555555555555555555555555555555555555555555555555 88 5 1 444444444444444444 000000000000 4 4 55 8888 4 4 6666666666666 222 777 777 0 000000000000 666666666 4 4 00 3333333333333333333333333333333333 3 4 4444444 8 66 111111111111111111111111111111111111111111 5 777 2222222 4 4 22 33 4 0 111111111111 1 4 9999 4 1 8 222222 9999 66 8888 8 3 4 66 5 222 0 00 44 88 55555555555555555555555555555555555555555555555555555555555 77 66666 8 8
lowQualScore : . ....... . .. ........ . ... .. . ................ . ... . .... . .. . . . . . ... . . . . . . . . .. ... .. . . ........ .. . .. . .... ..... .. ........ . .... . .. ...... . . . .............. . . . . . . ........ . ... .. ...... ..................... . ...... ... . . ... .. . .. .. ..... .. .. . .. . .. . .. . .. . . .. . . ...... . . . . ............. . .. ...... ..... . .. ............................................................ .. . . .................. ............ . . .. .... . . ............. ... ... ... . ............ ......... . . .. .................................. . . ....... . .. .......................................... . ... ....... . . .. .. . . ............ . . .... . . . ...... .... .. .... . . . .. . ... . .. .. .. ........................................................... .. ..... . .
lowQualScore : 5 5555555 5 88 22222222 0 000 88 0 2222222222222222 0 555 2 0000 0 22 7 7 7 7 7 777 7 4 0 4 7 2 0 7 22 777 00 7 3 33333333 99 7 99 7 7777 99999 99 77777777 7 0000 7 66 999999 7 1 7 33333333333333 7 0 0 1 0 7 77777777 5 999 77 666666 444444444444444444444 7 444444 777 4 0 888 11 4 11 11 88888 11 66 8 11 0 88 0 55 0 55 4 4 44 4 4 444444 0 0 0 0 9999999999999 0 99 444444 55555 0 22 555555555555555555555555555555555555555555555555555555555555 77 7 7 666666666666666666 555555555555 0 0 55 5555 0 0 8888888888888 555 000 000 7 555555555555 000000000 0 0 66 2222222222222222222222222222222222 9 4 4444444 9 11 222222222222222222222222222222222222222222 0 555 5555555 4 4 99 99 4 1 000000000000 0 4 4444 4 0 9 888888 4444 11 9999 9 3 4 99 1 555 9 99 22 33 33333333333333333333333333333333333333333333333333333333333 77 33333 0 0
consensus : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ANAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Reference ( family-3778 ) : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--AAAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
gi|1 : ACACGATTTCAAAAAGTC-CGCCATCGT-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AG-CTT-------TG-GCATCACAC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTC-TACTC-ATTTTAAAAATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAAGCTT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTC-GATTTC-CCGT--A-T-T-TAGCAA--GGAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTA-TAAATGCACGA-TTAGGG-TAAAA---AAAAAAAATTCGC-GAGTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTTACTTTAAATAA-T-TGATATA-CAACTTT---C-GATCAAGCT------AAAAATAT-TAT--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATT--GCCAAAAT-TGT--AA--ACCCT----TTTAACTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-CAT--TTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTTATTTTTTTTTTTTT-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAT------ATAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCTCTTTTAT------GCAACTGCAAA------------ATT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCAAG----AC----TACT---------GTT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GATTTTGGAAC-GGG-------GGTGGGGG--GATG------------T------------T-------C--------AAG-ACGTA---AAG-------AACTGACCTTT-AC-CCATATTTTTCAAGCGATAG-T--------GATG---AACGAAGTAATCCCG-TTTT----T-TCA-TA------TA----ATCC--ATTGTCTAT----GA-TT-C-CATTGTCTAATTTCATTAAGTAA--ATTTTAAT--GAAGTTAGATTTG--AAA--ATGTTCGTAA-GAACTAGGTACAGTTTCTAAAG-TCAAATGTTTGTATCATTGCCCCCCCGTC-TTTTG-TGCTCATT--TTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|10 : CTGTAAA------------ACT-ATCAGTGCATCATG-AAA--CA----T-GATTCC-ATTTTG---------------TTCA---AT---GTA---AACT-------C----TACT---------ACT-AT-TAAGAGCTTAA--TTT------GCG----GA-------------------GGTGTTGGAACTGGG-------GG-AAGGG--GGAA------------T------------T------------------A-ATGTAGATAAGTTATCTTAATTGACTCTA-AC-CCACCTTTT-----CGA-AT-TATT---T-------------A--AAGCCCG-GTTT----T-TTA-TA------TACATATTTC--ATAGACTATATATGACTT-C-TATATTCTAATTTCATTTAATCA--GTTT--ATTGGAAGTTAAGTTTGTTGGA--ATGTTT---ATGA-----------TTTGT-AAGTCCA----CTT---T--------TCCTTTCTTTTTG-TGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|11 : cttgTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTA-TG--CGCACGA-TTGGGG-TAAAA---A--------TAGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATG-AA-TGTTTTCATTTAGT-A--ATTG---TTAAAAGACT-TGATATC-CAACTTC------ATCAAGCT------AAC--TATAT-T--A--------TTA---------AG---GGATGC-AT-CGACGTCAGGACAG-TC--ACCACCAT-T----AA--ACCCC----TTTTATCT--ACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTA--TTCTTT-TTTTTTTTTTTTG-ATGC--ACG------ATAT-----TT-gtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|12 : -----------------T--ATGATT-GCA-AA--TGTCT-----------------CTGTAAA------------ATT-ATCATTGTATCATG-AAA--AG-----------------TGGGA-ATA--------TTCA---AT---GTA---AGCTGG----AC----TACTACATGTATAATT-AT-AAACAGTTTAA--TTT------GCA----GT-------------------GGTGTTGGAAA-GGG-------GGTGGGGGTAGGGG------------TACCTCCCCAAA-C-------C--------AAA-ACATA---AAG-------AATTCACCTTT-AC-CCACCTTTTTCAAGCAATAG-TGTT---TCGATC---AACAAAGTAATCCCG-TCTTAAAATAAAA-TA------TA----TTCC--ATTGCCGAT----GA-TTCC-CATTATCTAATTTCATTTAATCA--ATTTTAAC---AAGTCAAATTTGT
gi|13 : atatcatttattCCTT-AC-CCACC--------GAGATAG-TGTT---TCGATC---AACAAAGTTGGCCCA-TTTT----T-TAACTA------TA------CC--ATGGCCTAT----GA-TT-CACATTGTCTAATTTCACTTAATCACAATTTTAAT---AAGT---GTTCAT---A--ATTTTC---ATGA-----------TT------G-CC-----------CCCCCCCCCCCCCTTT-TTTTT-TTTTTGTTATTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTc
gi|14 : TTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAATgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
gi|14 : TTA-TG--C--ACGA-TTAGGG-TAAAAAAAAA------TTCGC-GATTAGGATAAAGTTAT-TTATT-GT---ATCAAATATGCAA-TGTTTTCATTTTAT-ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|15 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA-TTTT----T-TAAACA------TA----TCCC--ATTGCTTAT----GA-TTTC-CGTTGTCTAATTTCAATTAGTCA--TTTTCAAT--TAAGTTAGTTTTGTTGGAATATGTTCGT--T-A-----------TTTGT-GA---CA-------------CACCTCACCCAAT-TTTTT-TGTTCG-T--GTAATCTCAGATTTTCT-GCATTAG-AATTTAGTTT
gi|16 : aaTAA-T-TGATATA-AAACTTT---C-ATTCAAGCC---------------T-T--AAAGGGAACTTGTT--C---TAGTAGAGATGCGTT-CGACGT----AGAGATC--ACCAATGT-TGT--AA--ACCC-----TTTTATTT--G---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG-GAT--TTgtgtatccattatgatctaacaattccatgaacaattcagtgttgatggctaccatattaacaa
gi|17 : A--TA-GGC-ATGTCCGCTT-CCAATT-TACTC-ATG---GAAATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAt
gi|18 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG-CAT--TTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTAT----TTT-TATTTATTTTTTG-ATGC--ACG------ATAT-----TT-
gi|19 : T-A--AATGACTATAT---GGAGATTTTATTTC-GATCTC-CCAT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATTGAAGTTTTG
gi|2 : ACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AG-CTA-------TATGTAG-AAACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATATTTGATTTCCGTCTTCA----------------------ATTAAATGGGAAGCGT-TATTTTT-A--AATGACTATAT---GAGGATTTTATTTA-GATTTC-CCAT--A-T-T-TAGCAA--GAAAAC--CC-TCC-------AAGTTTTGCTAT-----A--GA--------T-C-G--GGA-GTGTTTG-TG--CAC----------------------------------GATTAGGGTAAAGTTTT-TT-TC-G--CGATCAAATATGCAA-TATTTTCATTTTAT-ATTGTTT-----ACATAA-T-TGATATA-GAACTTT---C-AATTAAGCT------T----TAT-T-TT-AAAGAGAATGTATG--C---TAG---AGATGTGAT-CGACGTAATGAGAGATC--ATCAACAT-TGT--AA---CCTT----TTTTAATT--GCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG-TAT--TTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTATTTT------TTCTCTCTCTTG-ATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAATTAAATCACAAAAGTGTT---TA-C-----TT---ACCGG-----------------T--ATGATT-GTA-AATTTGTCACT--------------ACTGCAAA------------ACT-ATTAGCATATCATG-AAA--CG----T-GATTTT-ATTTTGGGA-ATA--------TTCA---AT---GTACTAAGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------G-----------------------------------AAC-GGA-------GA-GGGTG-------------------------------T-------C--------AAAGACGTA---AAG-------AATTTACCTTT-AC-CCATA-TTTTCAAGGGATAG-TGTT---TTGATG---AACGAAGTAATCCCGTTTTT----T-TAA-TA------TA----TCCC--ATTGCTTAT----GA-TT-C-CATTGTCTAATTTAAATAAATCA--ATGTTAAT--GAAGTCAGATTTGTTTGAATATGTTCGTAA--A------------TTGT-A----------------TCCCCCCTCCC--------TTG-TGTTCA-T--TTAATTTgaatgattagggtccaaactccccgtcgatcaa
gi|3 : CACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTG-------TGTA-G--AAAC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAATTATATT---------AAATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAAGCGT-CAGTTTT-A--AATGAGTGTAT---GGAGATTTTAGTAA-GGTTCC-CC-----------AACAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTAC-----A--GA--------T-T-T--GGA-ATGCTT---------------------TAAAA---AA------ATCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATAAAATATGCAATTGTTTTCATTTTAT-ATTG--T---TTAGATAA-T-TGATATA-GAACTTT---C-GATCAAGCT------T----TAT-T-TTAAAAGGGAATGTATGCTC---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGTTCAA--ACTCTTCAGTTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG-TAT--TTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Aaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|3 : TTAT------ACAACTGCAAA------------ACT-ATTAGTGTATCATG-AAA--CGACCGT-GATTTC-ATTTTTGGA-ATA--------TTCA---AT---GTA---A----------T----TACT---------ATT-AA-AAGGAGTTTGA--TTT------GCACTGAGT-------------------GGT-TTGG-----------------GGGGG--GGGG------------T--------------------C--------AAG-ACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAG-TGATGAACCGTTGCAGAGCAAAGTAATCCCG-TTTT----T-TCA-TA------CA----TTCC--ATTGCCTAT----CA-TT-C-CATTGTTTAATTTCATTAAATCattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|4 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTTAGCACACTCTCCA--GCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATT-CACTCCATT---AAAATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGATACGTTCAGTTTT-ACAAATTACTATATTGGGAAGATTTTATTTC-GATTTC-CCGT--AGTAT-TAGTCA--GAAGCT--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTAATG--CGCACGA-TTGGGGCTAAGA---AA------T-AGC-GATTAGG-TAAAGT-AT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTTTATGATCG-CT---TTAAATAA-TGTGATATACCAACGTTATGCGGATCAAGCTATTATAA----TGT-TAT--AAAAGGACTTTATG--C---TAGT--AGATG-GATACGACGTCGTGAGAGATCAAACAAACATGTGT--AAGTACCCC----TTTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGTTAT--TTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTA--TTCTTT-TTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTATA------ATAAA-----T---TACC-----TC---ACCGT-----------------T---TGATT--CG-AAATTGT-GTTCTTATAATACAGCAACTGCGAA------------AC--ATC-GTGTATCATGAAAA--CG----T-GATTTCAATCTTGGG----A--------TTTATC-AT---GTA---AGCAAGAAATACATGGTACT---------ATT-ATAAAAGAGTTTGAC-TTT------GCA----GT-------------------GGTTTTGGAAC-GGG-------GT-GGGGG--Gtgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAA-TGT-CAGTTTTAA--AATGATTATCT---TGAGA-TTTATTTA-GATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCC----TCGAAG-TTTGCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTTT-TG--CG--CGATTTAGGG-TAAAGTT-TT------TTCGCTGATTAGGGTAAAGTTATATTATT-GTACAATCAAATATGCAA--GTTTTCATTTTAT-TTC---------------------TATA-AAACTTT---C-TTTCAAGC--------------T-T-T--AAAGGAAATTTAAG--CTTATAG---AGATGCGAT-CAACAC----AGAGA----ATCAATAT-TGT--AA--AACTT----CTTTATTT--GCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG-TA---TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C--------CT-TTTTTTTTTCTTG-ATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAAG------G-GAA-----T---CA-C-----AA---AAGGG-----------------TACATAATTAATATAATTTA-----TTTAT------G--ATGACAAAAATTGTCACTTTACT-ATCAGTGTATCGTG-AAA--CG----T-GATAAG-ATTTTGGGACAGAAGAATTCTCTCA---ATTACG-A---AG-TAG----AT----TACT---------GTT--T-AAAtg
gi|6 : aaacggactagggtaaagtgcgagatcaaatgATTAGGGTAGAGTTAT-TTATT-GTACGATCAAATATACAA-TGTTa
gi|6 : tttATGAGAT-CGATGT----AGAGATC--ACCAAT-------------------------------------TGATCATAAAAT-TTCATAAATCTTGAA-CGTT--GCA-T--CACG-TATATTTGGATG-TTA-------A-AATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGATTTA---------TTTTTCTTG-ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAAG------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATT-TCA-AATTTGTCACTTT------------------AA------------ACT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATG--------TTCA---AT---GTA---ACCTCG----AC----TACA---------ATT-AT-ATTGAGTGTAA--TTTTCAGTCACA----GT-------------------GGTGTTCGAAC-GGGAGTGGCCGG-GGGTG--GGGG------------TGACTTTCCCCAAC-------C--------AAA-ACGTA---GAG-------AATTGACCTTT-AC-CAACATTTA-CAAGCGATAG-TGTT---TCCATC---AATGAAGTAAACTCG-TTGT----T-TAA-TA------TA----TCCC--ACTGCCTAT----GA-TTCC-CATTGTCTAATTTCATTTAATCA--ATTGTAAT--GAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcaccaattgatcataaaatttcataaatcttgaacgttgcatcacgtatatttggatgttaaaatttatggcttattccgtggtgaaattgacggcgatttatttttcttgatgcacgatatcgatattacgtgttgcctgaaacaaaggaaatcacttgaaacgggcacatatgtcatttatttatgatttcaaatttgtcactttaaactattagtgtatcatgaaacgtgatttcattttgggaatgttcaatgtaacctcgactacaattatattgagtgtaattttcagtcacagtggtgttcgaacgggagtggccgggggtgggggtgactttccccaaccaaaacgtagagaattgacctttaccaacatttacaagcgatagtgtttccatcaatgaagtaaactcgttgtttaatatatcccactgcctatgattcccattgtctaatttcatttaatcaattgtaatgaagtt
gi|7 : tttattagggtagagttatttattgtacgatcaaatatacaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaTATTTATGATTTC-ACTTTAA-T-TATAGCA---GAA-ACTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTT
gi|8 : tgattagtttttgaAGAGATC--ACCAGTAT-TGT--AT--ACCTA----TTTTACTG--CCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG-TAT--TTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG--------------TTTTTTTTCTTG-ATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATCACAAA-----TGGGTA-CATATATC---ATTTA-----------------TTCATGATT-GCA-AATTTGTCACTTTTAT------ACAGCTGTAAA------------ACT-ATCATGGTAT-ATA-AAA---G----T-GATTTT-------GCA-ATG--------CTCACGAAT---GTA---AGCTAG----A------ACT---------AT--AT-A----GGTTAA--TTTTTGAA-GCG----GTTGGGGGGGGGGGGGGGAGGGGGGGGGGGGG-GGG-------GG-GGGGG--GGGGAGAGATATGAACC------------TAGCCACGT--------AAA-ACGTA---AGG-------AATTGAACTTT-ATTCCACATTTTT-AAGCGATAGTTGTT---gggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|9 : TACAAT------------ACTCATCAGTGCATCATG-AAAAACA----TTGATTCC-ATTTTG---------------TTCA---AT---GTA---AACT------------TACT---------ACTCAT-TAAGAGCTTCACATTT------GCA----AT-------------------GGTGTTGGAAC-TGG-------GG-GAAGG--GGGAAT----------T------------T-------CCCTCAACGAAA-ATGTAGATAAGTTATCTTAAT-GACTCTA-AC-CCACCTTTT------------------------------CGAATTAAGCCCG-GTTC----T-TTA-TAATACATTA----TTCCTCATAGACTATATATGACTT-C-TATATTCTAATTTCATTTA-TCA--GTTT--AT--GAAGTTAAGTTTGTTGGA--ATGTT--TATTGA-----------TTTGT-AAGGCCA----CTT---TTCCT--------TTC-TTTTTGTGTTCATT--T-AATCTCGAATTTTCT-GCAGTGG-AATTTAGTatttgtttgttcatccaatcaagtcatgtatttttgttacttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333333 1 111 11 1 444444444444444444 111 1111 111 111 22222222 111111 44444444444444 22222222 111111 555555555555555555555 111111 111 111 11111 11 111111 4444444444444 111111 11111 1 777777777777777777777777777777777777777777777777777777777777 333333333333333333 222222222222 1111111111111 111 222222222222 111111111 11 4444444444444444444444444444444444 1111111 111111111111111111111111111111111111111111 111 3333333 11 222222222222 111111 1111 1 111 11 11111111111111111111111111111111111111111111111111111111111 11111
lowQualScore : 2 2222222 2 33 66666666 0 111 33 0 888888888888888888 777 4 7777 8 99 6 6 6 6 6 111 1 1 3 2 0 3 8 6 99 111 77 5 5 88888888 77 1 77 5 7777 0 77 77 00000000 5 8888 5 99 555555 5 2 5 11111111111111 5 5 5 0 5 5 77777777 1 555 66 444444 000000000000000000000 1 111111 555 1 5 666 66 4 66 66 44444 66 66 0 55 4 33 4 55 4 55 4 4 55 4 4 444444 5 5 5 5 9999999999999 5 66 444444 22222 0 99 555555555555555555555555555555555555555555555555555555555555 88 5 1 444444444444444444 000000000000 4 4 55 8888 4 4 6666666666666 222 777 777 0 000000000000 666666666 4 4 00 3333333333333333333333333333333333 3 4 4444444 8 66 111111111111111111111111111111111111111111 5 777 2222222 4 4 22 33 4 0 111111111111 1 4 9999 4 1 8 222222 9999 66 8888 8 3 4 66 5 222 0 00 44 88 55555555555555555555555555555555555555555555555555555555555 77 66666 8 8
lowQualScore : . ....... . .. ........ . ... .. . .................. ... . .... . .. . . . . . ... . . . . . . . . .. ... .. . . ........ .. . .. . .... . .. .. ........ . .... . .. ...... . . . .............. . . . . . . ........ . ... .. ...... ..................... . ...... ... . . ... .. . .. .. ..... .. .. . .. . .. . .. . .. . . .. . . ...... . . . . ............. . .. ...... ..... . .. ............................................................ .. . . .................. ............ . . .. .... . . ............. ... ... ... . ............ ......... . . .. .................................. . . ....... . .. .......................................... . ... ....... . . .. .. . . ............ . . .... . . . ...... .... .. .... . . . .. . ... . .. .. .. ........................................................... .. ..... . .
lowQualScore : 5 5555555 5 88 22222222 0 000 88 0 888888888888888888 555 2 0000 0 22 7 7 7 7 7 777 7 4 0 4 7 2 0 7 22 777 00 7 3 33333333 99 7 99 7 7777 7 99 99 77777777 7 0000 7 66 999999 7 1 7 33333333333333 7 0 0 1 0 7 77777777 5 999 77 666666 444444444444444444444 7 444444 777 4 0 888 11 4 11 11 88888 11 66 8 11 0 88 0 55 0 55 4 4 44 4 4 444444 0 0 0 0 9999999999999 0 99 444444 55555 0 22 555555555555555555555555555555555555555555555555555555555555 77 7 7 666666666666666666 555555555555 0 0 55 5555 0 0 8888888888888 555 000 000 7 555555555555 000000000 0 0 66 2222222222222222222222222222222222 9 4 4444444 9 11 222222222222222222222222222222222222222222 0 555 5555555 4 4 99 99 4 1 000000000000 0 4 4444 4 0 9 888888 4444 11 9999 9 3 4 99 1 555 9 99 22 33 33333333333333333333333333333333333333333333333333333333333 77 33333 0 0
consensus : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Reference ( family-3778 ) : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ANAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
gi|1 : ACACGATTTCAAAAAGTC-CGCCATCGT-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AG-CTT-------TG-GCATCACAC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTC-TACTC-ATTTTAAAAATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAAGCTT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTC-GATTTC-CCGT--A-T-T-TAGCAA--GGAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTA-TAAATGCACGA-TTAGGG-TAAAA---AAAAAAAATTCGC-GAGTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTTACTTTAAATAA-T-TGATATA-CAACTTT---C-GATCAAGCT------AAAAATAT-TAT--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATT--GCCAAAAT-TGT--AA--ACCCT----TTTAACTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-CAT--TTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTTATTTTTTTTTTTTT-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAT------ATAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCTCTTTTAT------GCAACTGCAAA------------ATT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCAAG----AC----TACT---------GTT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GATTTTGGAAC-GGG-------GGTGGGGG--GATG------------T------------T-------C--------AAG-ACGTA---AAG-------AACTGACCTTT-AC-CCATATTTTTCAAGCGATAG-T--------GATG---AACGAAGTAATCCCG-TTTT----T-TCA-TA------TA----ATCC--ATTGTCTAT----GA-TT-C-CATTGTCTAATTTCATTAAGTAA--ATTTTAAT--GAAGTTAGATTTG--AAA--ATGTTCGTAA-GAACTAGGTACAGTTTCTAAAG-TCAAATGTTTGTATCATTGCCCCCCCGTC-TTTTG-TGCTCATT--TTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|10 : CTGTAAA------------ACT-ATCAGTGCATCATG-AAA--CA----T-GATTCC-ATTTTG---------------TTCA---AT---GTA---AACT-------C----TACT---------ACT-AT-TAAGAGCTTAA--TTT------GCG----GA-------------------GGTGTTGGAACTGGG-------GG-AAGGG--GGAA------------T------------T------------------A-ATGTAGATAAGTTATCTTAATTGACTCTA-AC-CCACCTTTT-----CGA-AT-TATT---T-------------A--AAGCCCG-GTTT----T-TTA-TA------TACATATTTC--ATAGACTATATATGACTT-C-TATATTCTAATTTCATTTAATCA--GTTT--ATTGGAAGTTAAGTTTGTTGGA--ATGTTT---ATGA-----------TTTGT-AAGTCCA----CTT---T--------TCCTTTCTTTTTG-TGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|11 : cttgTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTA-TG--CGCACGA-TTGGGG-TAAAA---A--------TAGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATG-AA-TGTTTTCATTTAGT-A--ATTG---TTAAAAGACT-TGATATC-CAACTTC------ATCAAGCT------AAC--TATAT-T--A--------TTA---------AG---GGATGC-AT-CGACGTCAGGACAG-TC--ACCACCAT-T----AA--ACCCC----TTTTATCT--ACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTA--TTCTTT-TTTTTTTTTTTTG-ATGC--ACG------ATAT-----TT-gtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|12 : -----------------T--ATGATT-GCA-AA--TGTCT-----------------CTGTAAA------------ATT-ATCATTGTATCATG-AAA--AG-----------------TGGGA-ATA--------TTCA---AT---GTA---AGCTGG----AC----TACTACATGTATAATT-AT-AAACAGTTTAA--TTT------GCA----GT-------------------GGTGTTGGAAA-GGG-------GGTGGGGGTAGGGG------------TACCTCCCCAAA-C-------C--------AAA-ACATA---AAG-------AATTCACCTTT-AC-CCACCTTTTTCAAGCAATAG-TGTT---TCGATC---AACAAAGTAATCCCG-TCTTAAAATAAAA-TA------TA----TTCC--ATTGCCGAT----GA-TTCC-CATTATCTAATTTCATTTAATCA--ATTTTAAC---AAGTCAAATTTGT
gi|13 : atatcatttattCCTT-AC-CCACC--------GAGATAG-TGTT---TCGATC---AACAAAGTTGGCCCA-TTTT----T-TAACTA------TA------CC--ATGGCCTAT----GA-TT-CACATTGTCTAATTTCACTTAATCACAATTTTAAT---AAGT---GTTCAT---A--ATTTTC---ATGA-----------TT------G-CC-----------CCCCCCCCCCCCCTTT-TTTTT-TTTTTGTTATTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTc
gi|14 : TTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAATgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
gi|14 : TTA-TG--C--ACGA-TTAGGG-TAAAAAAAAA------TTCGC-GATTAGGATAAAGTTAT-TTATT-GT---ATCAAATATGCAA-TGTTTTCATTTTAT-ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|15 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA-TTTT----T-TAAACA------TA----TCCC--ATTGCTTAT----GA-TTTC-CGTTGTCTAATTTCAATTAGTCA--TTTTCAAT--TAAGTTAGTTTTGTTGGAATATGTTCGT--T-A-----------TTTGT-GA---CA-------------CACCTCACCCAAT-TTTTT-TGTTCG-T--GTAATCTCAGATTTTCT-GCATTAG-AATTTAGTTT
gi|16 : aaTAA-T-TGATATA-AAACTTT---C-ATTCAAGCC---------------T-T--AAAGGGAACTTGTT--C---TAGTAGAGATGCGTT-CGACGT----AGAGATC--ACCAATGT-TGT--AA--ACCC-----TTTTATTT--G---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG-GAT--TTgtgtatccattatgatctaacaattccatgaacaattcagtgttgatggctaccatattaacaa
gi|17 : A--TA-GGC-ATGTCCGCTT-CCAATT-TACTC-ATG---GAAATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAt
gi|18 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG-CAT--TTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTAT----TTT-TATTTATTTTTTG-ATGC--ACG------ATAT-----TT-
gi|19 : T-A--AATGACTATAT---GGAGATTTTATTTC-GATCTC-CCAT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATTGAAGTTTTG
gi|2 : ACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AG-CTA-------TATGTAG-AAACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATATTTGATTTCCGTCTTCA----------------------ATTAAATGGGAAGCGT-TATTTTT-A--AATGACTATAT---GAGGATTTTATTTA-GATTTC-CCAT--A-T-T-TAGCAA--GAAAAC--CC-TCC-------AAGTTTTGCTAT-----A--GA--------T-C-G--GGA-GTGTTTG-TG--CAC----------------------------------GATTAGGGTAAAGTTTT-TT-TC-G--CGATCAAATATGCAA-TATTTTCATTTTAT-ATTGTTT-----ACATAA-T-TGATATA-GAACTTT---C-AATTAAGCT------T----TAT-T-TT-AAAGAGAATGTATG--C---TAG---AGATGTGAT-CGACGTAATGAGAGATC--ATCAACAT-TGT--AA---CCTT----TTTTAATT--GCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG-TAT--TTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTATTTT------TTCTCTCTCTTG-ATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAATTAAATCACAAAAGTGTT---TA-C-----TT---ACCGG-----------------T--ATGATT-GTA-AATTTGTCACT--------------ACTGCAAA------------ACT-ATTAGCATATCATG-AAA--CG----T-GATTTT-ATTTTGGGA-ATA--------TTCA---AT---GTACTAAGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------G-----------------------------------AAC-GGA-------GA-GGGTG-------------------------------T-------C--------AAAGACGTA---AAG-------AATTTACCTTT-AC-CCATA-TTTTCAAGGGATAG-TGTT---TTGATG---AACGAAGTAATCCCGTTTTT----T-TAA-TA------TA----TCCC--ATTGCTTAT----GA-TT-C-CATTGTCTAATTTAAATAAATCA--ATGTTAAT--GAAGTCAGATTTGTTTGAATATGTTCGTAA--A------------TTGT-A----------------TCCCCCCTCCC--------TTG-TGTTCA-T--TTAATTTgaatgattagggtccaaactccccgtcgatcaa
gi|3 : CACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTG-------TGTAGA--A-AC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAATTATATT---------AAATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAAGCGT-CAGTTTT-A--AATGAGTGTAT---GGAGATTTTAGTAA-GGTTCC-CC-----------AACAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCT---A--CA--GA--------T-T-T--GGA-ATGCTT---------------------TAAAA---AA------ATCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATAAAATATGCAATTGTTTTCATTTTAT-ATTG--T---TTAGATAA-T-TGATATA-GAACTTT---C-GATCAAGCT------T----TAT-T-TTAAAAGGGAATGTATGCTC---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGTTCAA--ACTCTTCAGTTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG-TAT--TTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Aaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|3 : TTAT------ACAACTGCAAA------------ACT-ATTAGTGTATCATG-AAA--CGACCGT-GATTTC-ATTTTTGGA-ATA--------TTCA---AT---GTA---A----------T----TACT---------ATT-AA-AAGGAGTTTGA--TTT------GCACTGAGT-------------------GGT-TTGG-----------------GGGGG--GGGG------------T--------------------C--------AAG-ACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAG-TGATGAACCGTTGCAGAGCAAAGTAATCCCG-TTTT----T-TCA-TA------CA----TTCC--ATTGCCTAT----CA-TT-C-CATTGTTTAATTTCATTAAATCattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|4 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTTAGCACACTCTCCA--GCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATT-CACTCCATT---AAAATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGATACGTTCAGTTTT-ACAAATTACTATATTGGGAAGATTTTATTTC-GATTTC-CCGT--AGTAT-TAGTCA--GAAGCT--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTAATG--CGCACGA-TTGGGGCTAAGA---AA------T-AGC-GATTAGG-TAAAGT-AT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTTTATGATCG-CT---TTAAATAA-TGTGATATACCAACGTTATGCGGATCAAGCTATTATAA----TGT-TAT--AAAAGGACTTTATG--C---TAGT--AGATG-GATACGACGTCGTGAGAGATCAAACAAACATGTGT--AAGTACCCC----TTTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGTTAT--TTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTA--TTCTTT-TTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTATA------ATAAA-----T---TACC-----TC---ACCGT-----------------T---TGATT--CG-AAATTGT-GTTCTTATAATACAGCAACTGCGAA------------AC--ATC-GTGTATCATGAAAA--CG----T-GATTTCAATCTTGGG----A--------TTTATC-AT---GTA---AGCAAGAAATACATGGTACT---------ATT-ATAAAAGAGTTTGAC-TTT------GCA----GT-------------------GGTTTTGGAAC-GGG-------GT-GGGGG--Gtgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAA-TGT-CAGTTTTAA--AATGATTATCT---TGAGA-TTTATTTA-GATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCC----TCGAAG-TTTGCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTTT-TG--CG--CGATTTAGGG-TAAAGTT-TT------TTCGCTGATTAGGGTAAAGTTATATTATT-GTACAATCAAATATGCAA--GTTTTCATTTTAT-TTC---------------------TATA-AAACTTT---C-TTTCAAGC--------------T-T-T--AAAGGAAATTTAAG--CTTATAG---AGATGCGAT-CAACAC----AGAGA----ATCAATAT-TGT--AA--AACTT----CTTTATTT--GCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG-TA---TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C--------CT-TTTTTTTTTCTTG-ATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAAG------G-GAA-----T---CA-C-----AA---AAGGG-----------------TACATAATTAATATAATTTA-----TTTAT------G--ATGACAAAAATTGTCACTTTACT-ATCAGTGTATCGTG-AAA--CG----T-GATAAG-ATTTTGGGACAGAAGAATTCTCTCA---ATTACG-A---AG-TAG----AT----TACT---------GTT--T-AAAtg
gi|6 : aaacggactagggtaaagtgcgagatcaaatgATTAGGGTAGAGTTAT-TTATT-GTACGATCAAATATACAA-TGTTa
gi|6 : tttATGAGAT-CGATGT----AGAGATC--ACCAAT-------------------------------------TGATCATAAAAT-TTCATAAATCTTGAA-CGTT--GCA-T--CACG-TATATTTGGATG-TTA-------A-AATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGATTTA---------TTTTTCTTG-ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAAG------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATT-TCA-AATTTGTCACTTT------------------AA------------ACT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATG--------TTCA---AT---GTA---ACCTCG----AC----TACA---------ATT-AT-ATTGAGTGTAA--TTTTCAGTCACA----GT-------------------GGTGTTCGAAC-GGGAGTGGCCGG-GGGTG--GGGG------------TGACTTTCCCCAAC-------C--------AAA-ACGTA---GAG-------AATTGACCTTT-AC-CAACATTTA-CAAGCGATAG-TGTT---TCCATC---AATGAAGTAAACTCG-TTGT----T-TAA-TA------TA----TCCC--ACTGCCTAT----GA-TTCC-CATTGTCTAATTTCATTTAATCA--ATTGTAAT--GAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcaccaattgatcataaaatttcataaatcttgaacgttgcatcacgtatatttggatgttaaaatttatggcttattccgtggtgaaattgacggcgatttatttttcttgatgcacgatatcgatattacgtgttgcctgaaacaaaggaaatcacttgaaacgggcacatatgtcatttatttatgatttcaaatttgtcactttaaactattagtgtatcatgaaacgtgatttcattttgggaatgttcaatgtaacctcgactacaattatattgagtgtaattttcagtcacagtggtgttcgaacgggagtggccgggggtgggggtgactttccccaaccaaaacgtagagaattgacctttaccaacatttacaagcgatagtgtttccatcaatgaagtaaactcgttgtttaatatatcccactgcctatgattcccattgtctaatttcatttaatcaattgtaatgaagtt
gi|7 : tttattagggtagagttatttattgtacgatcaaatatacaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaTATTTATGATTTC-ACTTTAA-T-TATAGCA---GAA-ACTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTT
gi|8 : tgattagtttttgaAGAGATC--ACCAGTAT-TGT--AT--ACCTA----TTTTACTG--CCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG-TAT--TTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG--------------TTTTTTTTCTTG-ATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATCACAAA-----TGGGTA-CATATATC---ATTTA-----------------TTCATGATT-GCA-AATTTGTCACTTTTAT------ACAGCTGTAAA------------ACT-ATCATGGTAT-ATA-AAA---G----T-GATTTT-------GCA-ATG--------CTCACGAAT---GTA---AGCTAG----A------ACT---------AT--AT-A----GGTTAA--TTTTTGAA-GCG----GTTGGGGGGGGGGGGGGGAGGGGGGGGGGGGG-GGG-------GG-GGGGG--GGGGAGAGATATGAACC------------TAGCCACGT--------AAA-ACGTA---AGG-------AATTGAACTTT-ATTCCACATTTTT-AAGCGATAGTTGTT---gggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|9 : TACAAT------------ACTCATCAGTGCATCATG-AAAAACA----TTGATTCC-ATTTTG---------------TTCA---AT---GTA---AACT------------TACT---------ACTCAT-TAAGAGCTTCACATTT------GCA----AT-------------------GGTGTTGGAAC-TGG-------GG-GAAGG--GGGAAT----------T------------T-------CCCTCAACGAAA-ATGTAGATAAGTTATCTTAAT-GACTCTA-AC-CCACCTTTT------------------------------CGAATTAAGCCCG-GTTC----T-TTA-TAATACATTA----TTCCTCATAGACTATATATGACTT-C-TATATTCTAATTTCATTTA-TCA--GTTT--AT--GAAGTTAAGTTTGTTGGA--ATGTT--TATTGA-----------TTTGT-AAGGCCA----CTT---TTCCT--------TTC-TTTTTGTGTTCATT--T-AATCTCGAATTTTCT-GCAGTGG-AATTTAGTatttgtttgttcatccaatcaagtcatgtatttttgttacttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333333 1 111 11 1 444444444444444444 111 1111 111 111 11111 22222222 111111 44444444444444 22222222 111111 555555555555555555555 111111 111 111 11111 11 111111 4444444444444 111111 11111 1 777777777777777777777777777777777777777777777777777777777777 333333333333333333 222222222222 1111111111111 111 222222222222 111111111 11 4444444444444444444444444444444444 1111111 111111111111111111111111111111111111111111 111 3333333 11 222222222222 111111 1111 1 111 11 11111111111111111111111111111111111111111111111111111111111 11111
lowQualScore : 2 2222222 2 33 66666666 0 111 33 0 666666666666666666 777 4 7777 8 99 6 6 6 6 6 111 1 1 3 2 0 3 8 6 99 111 77 5 5 88888888 77 1 77 5 7777 33333 77 00000000 5 8888 5 99 555555 5 2 5 11111111111111 5 5 5 0 5 5 77777777 1 555 66 444444 000000000000000000000 1 111111 555 1 5 666 66 4 66 66 44444 66 66 0 55 4 33 4 55 4 55 4 4 55 4 4 444444 5 5 5 5 9999999999999 5 66 444444 22222 0 99 555555555555555555555555555555555555555555555555555555555555 88 5 1 444444444444444444 000000000000 4 4 55 8888 4 4 6666666666666 222 777 777 0 000000000000 666666666 4 4 00 3333333333333333333333333333333333 3 4 4444444 8 66 111111111111111111111111111111111111111111 5 777 2222222 4 4 22 33 4 0 111111111111 1 4 9999 4 1 8 222222 9999 66 8888 8 3 4 66 5 222 0 00 44 88 55555555555555555555555555555555555555555555555555555555555 77 66666 8 8
lowQualScore : . ....... . .. ........ . ... .. . .................. ... . .... . .. . . . . . ... . . . . . . . . .. ... .. . . ........ .. . .. . .... ..... .. ........ . .... . .. ...... . . . .............. . . . . . . ........ . ... .. ...... ..................... . ...... ... . . ... .. . .. .. ..... .. .. . .. . .. . .. . .. . . .. . . ...... . . . . ............. . .. ...... ..... . .. ............................................................ .. . . .................. ............ . . .. .... . . ............. ... ... ... . ............ ......... . . .. .................................. . . ....... . .. .......................................... . ... ....... . . .. .. . . ............ . . .... . . . ...... .... .. .... . . . .. . ... . .. .. .. ........................................................... .. ..... . .
lowQualScore : 5 5555555 5 88 22222222 0 000 88 0 888888888888888888 555 2 0000 0 22 7 7 7 7 7 777 7 4 0 4 7 2 0 7 22 777 00 7 3 33333333 99 7 99 7 7777 99999 99 77777777 7 0000 7 66 999999 7 1 7 33333333333333 7 0 0 1 0 7 77777777 5 999 77 666666 444444444444444444444 7 444444 777 4 0 888 11 4 11 11 88888 11 66 8 11 0 88 0 55 0 55 4 4 44 4 4 444444 0 0 0 0 9999999999999 0 99 444444 55555 0 22 555555555555555555555555555555555555555555555555555555555555 77 7 7 666666666666666666 555555555555 0 0 55 5555 0 0 8888888888888 555 000 000 7 555555555555 000000000 0 0 66 2222222222222222222222222222222222 9 4 4444444 9 11 222222222222222222222222222222222222222222 0 555 5555555 4 4 99 99 4 1 000000000000 0 4 4444 4 0 9 888888 4444 11 9999 9 3 4 99 1 555 9 99 22 33 33333333333333333333333333333333333333333333333333333333333 77 33333 0 0
consensus : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Reference ( family-3778 ) : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
gi|1 : ACACGATTTCAAAAAGTC-CGCCATCGT-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AG-CTT-------TG-GCATCACAC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTC-TACTC-ATTTTAAAAATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAAGCTT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTC-GATTTC-CCGT--A-T-T-TAGCAA--GGAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTA-TAAATGCACGA-TTAGGG-TAAAA---AAAAAAAATTCGC-GAGTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTTACTTTAAATAA-T-TGATATA-CAACTTT---C-GATCAAGCT------AAAAATAT-TAT--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATT--GCCAAAAT-TGT--AA--ACCCT----TTTAACTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-CAT--TTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTTATTTTTTTTTTTTT-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAT------ATAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCTCTTTTAT------GCAACTGCAAA------------ATT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCAAG----AC----TACT---------GTT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GATTTTGGAAC-GGG-------GGTGGGGG--GATG------------T------------T-------C--------AAG-ACGTA---AAG-------AACTGACCTTT-AC-CCATATTTTTCAAGCGATAG-T--------GATG---AACGAAGTAATCCCG-TTTT----T-TCA-TA------TA----ATCC--ATTGTCTAT----GA-TT-C-CATTGTCTAATTTCATTAAGTAA--ATTTTAAT--GAAGTTAGATTTG--AAA--ATGTTCGTAA-GAACTAGGTACAGTTTCTAAAG-TCAAATGTTTGTATCATTGCCCCCCCGTC-TTTTG-TGCTCATT--TTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|10 : CTGTAAA------------ACT-ATCAGTGCATCATG-AAA--CA----T-GATTCC-ATTTTG---------------TTCA---AT---GTA---AACT-------C----TACT---------ACT-AT-TAAGAGCTTAA--TTT------GCG----GA-------------------GGTGTTGGAACTGGG-------GG-AAGGG--GGAA------------T------------T------------------A-ATGTAGATAAGTTATCTTAATTGACTCTA-AC-CCACCTTTT-----CGA-AT-TATT---T-------------A--AAGCCCG-GTTT----T-TTA-TA------TACATATTTC--ATAGACTATATATGACTT-C-TATATTCTAATTTCATTTAATCA--GTTT--ATTGGAAGTTAAGTTTGTTGGA--ATGTTT---ATGA-----------TTTGT-AAGTCCA----CTT---T--------TCCTTTCTTTTTG-TGTTCA-T--TTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|11 : cttgTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTA-TG--CGCACGA-TTGGGG-TAAAA---A--------TAGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATG-AA-TGTTTTCATTTAGT-A--ATTG---TTAAAAGACT-TGATATC-CAACTTC------ATCAAGCT------AAC--TATAT-T--A--------TTA---------AG---GGATGC-AT-CGACGTCAGGACAG-TC--ACCACCAT-T----AA--ACCCC----TTTTATCT--ACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTA--TTCTTT-TTTTTTTTTTTTG-ATGC--ACG------ATAT-----TT-gtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|12 : -----------------T--ATGATT-GCA-AA--TGTCT-----------------CTGTAAA------------ATT-ATCATTGTATCATG-AAA--AG-----------------TGGGA-ATA--------TTCA---AT---GTA---AGCTGG----AC----TACTACATGTATAATT-AT-AAACAGTTTAA--TTT------GCA----GT-------------------GGTGTTGGAAA-GGG-------GGTGGGGGTAGGGG------------TACCTCCCCAAA-C-------C--------AAA-ACATA---AAG-------AATTCACCTTT-AC-CCACCTTTTTCAAGCAATAG-TGTT---TCGATC---AACAAAGTAATCCCG-TCTTAAAATAAAA-TA------TA----TTCC--ATTGCCGAT----GA-TTCC-CATTATCTAATTTCATTTAATCA--ATTTTAAC---AAGTCAAATTTGT
gi|13 : atatcatttattCCTT-AC-CCACC--------GAGATAG-TGTT---TCGATC---AACAAAGTTGGCCCA-TTTT----T-TAACTA------TA------CC--ATGGCCTAT----GA-TT-CACATTGTCTAATTTCACTTAATCACAATTTTAAT---AAGT---GTTCAT---A--ATTTTC---ATGA-----------TT------G-CC-----------CCCCCCCCCCCCCTTT-TTTTT-TTTTTGTTATTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTc
gi|14 : TTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAATgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
gi|14 : TTA-TG--C--ACGA-TTAGGG-TAAAAAAAAA------TTCGC-GATTAGGATAAAGTTAT-TTATT-GT---ATCAAATATGCAA-TGTTTTCATTTTAT-ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|15 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA-TTTT----T-TAAACA------TA----TCCC--ATTGCTTAT----GA-TTTC-CGTTGTCTAATTTCAATTAGTCA--TTTTCAAT--TAAGTTAGTTTTGTTGGAATATGTTCGT--T-A-----------TTTGT-GA---CA-------------CACCTCACCCAAT-TTTTT-TGTTCG-T--GTAATCTCAGATTTTCT-GCATTAG-AATTTAGTTT
gi|16 : aaTAA-T-TGATATA-AAACTTT---C-ATTCAAGCC---------------T-T--AAAGGGAACTTGTT--C---TAGTAGAGATGCGTT-CGACGT----AGAGATC--ACCAATGT-TGT--AA--ACCC-----TTTTATTT--G---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG-GAT--TTgtgtatccattatgatctaacaattccatgaacaattcagtgttgatggctaccatattaacaa
gi|17 : A--TA-GGC-ATGTCCGCTT-CCAATT-TACTC-ATG---GAAATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAt
gi|18 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG-CAT--TTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTAT----TTT-TATTTATTTTTTG-ATGC--ACG------ATAT-----TT-
gi|19 : T-A--AATGACTATAT---GGAGATTTTATTTC-GATCTC-CCAT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATTGAAGTTTTG
gi|2 : ACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AG-CTA-------TATGTAG-AAACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATATTTGATTTCCGTCTTCA----------------------ATTAAATGGGAAGCGT-TATTTTT-A--AATGACTATAT---GAGGATTTTATTTA-GATTTC-CCAT--A-T-T-TAGCAA--GAAAAC--CC-TCC-------AAGTTTTGCTAT-----A--GA--------T-C-G--GGA-GTGTTTG-TG--CAC----------------------------------GATTAGGGTAAAGTTTT-TT-TC-G--CGATCAAATATGCAA-TATTTTCATTTTAT-ATTGTTT-----ACATAA-T-TGATATA-GAACTTT---C-AATTAAGCT------T----TAT-T-TT-AAAGAGAATGTATG--C---TAG---AGATGTGAT-CGACGTAATGAGAGATC--ATCAACAT-TGT--AA---CCTT----TTTTAATT--GCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG-TAT--TTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTATTTT------TTCTCTCTCTTG-ATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAATTAAATCACAAAAGTGTT---TA-C-----TT---ACCGG-----------------T--ATGATT-GTA-AATTTGTCACT--------------ACTGCAAA------------ACT-ATTAGCATATCATG-AAA--CG----T-GATTTT-ATTTTGGGA-ATA--------TTCA---AT---GTACTAAGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------G-----------------------------------AAC-GGA-------GA-GGGTG-------------------------------T-------C--------AAAGACGTA---AAG-------AATTTACCTTT-AC-CCATA-TTTTCAAGGGATAG-TGTT---TTGATG---AACGAAGTAATCCCGTTTTT----T-TAA-TA------TA----TCCC--ATTGCTTAT----GA-TT-C-CATTGTCTAATTTAAATAAATCA--ATGTTAAT--GAAGTCAGATTTGTTTGAATATGTTCGTAA--A------------TTGT-A----------------TCCCCCCTCCC--------TTG-TGTTCA-T--TTAATTTgaatgattagggtccaaactccccgtcgatcaa
gi|3 : CACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTG-------TGTAGA--A-AC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAATTATATT---------AAATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAAGCGT-CAGTTTT-A--AATGAGTGTAT---GGAGATTTTAGTAA-GGTTCC-CC-----------AACAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTAC-----A--GA--------T-T-T--GGA-ATGCTT---------------------TAAAA---AA------ATCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATAAAATATGCAATTGTTTTCATTTTAT-ATTG--T---TTAGATAA-T-TGATATA-GAACTTT---C-GATCAAGCT------T----TAT-T-TTAAAAGGGAATGTATGCTC---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGTTCAA--ACTCTTCAGTTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG-TAT--TTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Aaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|3 : TTAT------ACAACTGCAAA------------ACT-ATTAGTGTATCATG-AAA--CGACCGT-GATTTC-ATTTTTGGA-ATA--------TTCA---AT---GTA---A----------T----TACT---------ATT-AA-AAGGAGTTTGA--TTT------GCACTGAGT-------------------GGT-TTGG-----------------GGGGG--GGGG------------T--------------------C--------AAG-ACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAG-TGATGAACCGTTGCAGAGCAAAGTAATCCCG-TTTT----T-TCA-TA------CA----TTCC--ATTGCCTAT----CA-TT-C-CATTGTTTAATTTCATTAAATCattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|4 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTTAGCACACTCTCCA--GCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATT-CACTCCATT---AAAATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGATACGTTCAGTTTT-ACAAATTACTATATTGGGAAGATTTTATTTC-GATTTC-CCGT--AGTAT-TAGTCA--GAAGCT--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTAATG--CGCACGA-TTGGGGCTAAGA---AA------T-AGC-GATTAGG-TAAAGT-AT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTTTATGATCG-CT---TTAAATAA-TGTGATATACCAACGTTATGCGGATCAAGCTATTATAA----TGT-TAT--AAAAGGACTTTATG--C---TAGT--AGATG-GATACGACGTCGTGAGAGATCAAACAAACATGTGT--AAGTACCCC----TTTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGTTAT--TTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTA--TTCTTT-TTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTATA------ATAAA-----T---TACC-----TC---ACCGT-----------------T---TGATT--CG-AAATTGT-GTTCTTATAATACAGCAACTGCGAA------------AC--ATC-GTGTATCATGAAAA--CG----T-GATTTCAATCTTGGG----A--------TTTATC-AT---GTA---AGCAAGAAATACATGGTACT---------ATT-ATAAAAGAGTTTGAC-TTT------GCA----GT-------------------GGTTTTGGAAC-GGG-------GT-GGGGG--Gtgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAA-TGT-CAGTTTTAA--AATGATTATCT---TGAGA-TTTATTTA-GATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCC----TCGAAG-TTTGCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTTT-TG--CG--CGATTTAGGG-TAAAGTT-TT------TTCGCTGATTAGGGTAAAGTTATATTATT-GTACAATCAAATATGCAA--GTTTTCATTTTAT-TTC---------------------TATA-AAACTTT---C-TTTCAAGC--------------T-T-T--AAAGGAAATTTAAG--CTTATAG---AGATGCGAT-CAACAC----AGAGA----ATCAATAT-TGT--AA--AACTT----CTTTATTT--GCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG-TA---TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C--------CT-TTTTTTTTTCTTG-ATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAAG------G-GAA-----T---CA-C-----AA---AAGGG-----------------TACATAATTAATATAATTTA-----TTTAT------G--ATGACAAAAATTGTCACTTTACT-ATCAGTGTATCGTG-AAA--CG----T-GATAAG-ATTTTGGGACAGAAGAATTCTCTCA---ATTACG-A---AG-TAG----AT----TACT---------GTT--T-AAAtg
gi|6 : aaacggactagggtaaagtgcgagatcaaatgATTAGGGTAGAGTTAT-TTATT-GTACGATCAAATATACAA-TGTTa
gi|6 : tttATGAGAT-CGATGT----AGAGATC--ACCAAT-------------------------------------TGATCATAAAAT-TTCATAAATCTTGAA-CGTT--GCA-T--CACG-TATATTTGGATG-TTA-------A-AATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGATTTA---------TTTTTCTTG-ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAAG------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATT-TCA-AATTTGTCACTTT------------------AA------------ACT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATG--------TTCA---AT---GTA---ACCTCG----AC----TACA---------ATT-AT-ATTGAGTGTAA--TTTTCAGTCACA----GT-------------------GGTGTTCGAAC-GGGAGTGGCCGG-GGGTG--GGGG------------TGACTTTCCCCAAC-------C--------AAA-ACGTA---GAG-------AATTGACCTTT-AC-CAACATTTA-CAAGCGATAG-TGTT---TCCATC---AATGAAGTAAACTCG-TTGT----T-TAA-TA------TA----TCCC--ACTGCCTAT----GA-TTCC-CATTGTCTAATTTCATTTAATCA--ATTGTAAT--GAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaatgagatcgatgtagagatcaccaattgatcataaaatttcataaatcttgaacgttgcatcacgtatatttggatgttaaaatttatggcttattccgtggtgaaattgacggcgatttatttttcttgatgcacgatatcgatattacgtgttgcctgaaacaaaggaaatcacttgaaacgggcacatatgtcatttatttatgatttcaaatttgtcactttaaactattagtgtatcatgaaacgtgatttcattttgggaatgttcaatgtaacctcgactacaattatattgagtgtaattttcagtcacagtggtgttcgaacgggagtggccgggggtgggggtgactttccccaaccaaaacgtagagaattgacctttaccaacatttacaagcgatagtgtttccatcaatgaagtaaactcgttgtttaatatatcccactgcctatgattcccattgtctaatttcatttaatcaattgtaatgaagtt
gi|7 : tttattagggtagagttatttattgtacgatcaaatatacaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattaTATTTATGATTTC-ACTTTAA-T-TATAGCA---GAA-ACTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTT
gi|8 : tgattagtttttgaAGAGATC--ACCAGTAT-TGT--AT--ACCTA----TTTTACTG--CCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG-TAT--TTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG--------------TTTTTTTTCTTG-ATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATCACAAA-----TGGGTA-CATATATC---ATTTA-----------------TTCATGATT-GCA-AATTTGTCACTTTTAT------ACAGCTGTAAA------------ACT-ATCATGGTAT-ATA-AAA---G----T-GATTTT-------GCA-ATG--------CTCACGAAT---GTA---AGCTAG----A------ACT---------AT--AT-A----GGTTAA--TTTTTGAA-GCG----GTTGGGGGGGGGGGGGGGAGGGGGGGGGGGGG-GGG-------GG-GGGGG--GGGGAGAGATATGAACC------------TAGCCACGT--------AAA-ACGTA---AGG-------AATTGAACTTT-ATTCCACATTTTT-AAGCGATAGTTGTT---gggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|9 : TACAAT------------ACTCATCAGTGCATCATG-AAAAACA----TTGATTCC-ATTTTG---------------TTCA---AT---GTA---AACT------------TACT---------ACTCAT-TAAGAGCTTCACATTT------GCA----AT-------------------GGTGTTGGAAC-TGG-------GG-GAAGG--GGGAAT----------T------------T-------CCCTCAACGAAA-ATGTAGATAAGTTATCTTAAT-GACTCTA-AC-CCACCTTTT------------------------------CGAATTAAGCCCG-GTTC----T-TTA-TAATACATTA----TTCCTCATAGACTATATATGACTT-C-TATATTCTAATTTCATTTA-TCA--GTTT--AT--GAAGTTAAGTTTGTTGGA--ATGTT--TATTGA-----------TTTGT-AAGGCCA----CTT---TTCCT--------TTC-TTTTTGTGTTCATT--T-AATCTCGAATTTTCT-GCAGTGG-AATTTAGTatttgtttgttcatccaatcaagtcatgtatttttgttacttg
blockSeqs : G ATCGAGA C GA CCAATTCT A TAT TA T TAGCACACTCTCCAGC GGA A TACG G AG C T T A C . A T G A G T A CA TGG AT A A TAATTA CG G TG A TCGA GGATT TT GTAAAGTT G TAG C AA CGCA T G C AAAAATTC T A C T G ATTGT A CT CC ATGCGG TATTATAATGTTAT T CTTA TAG C A CAG AA G TC GT TTCAG TA AT AT T CA T AA T AT C G AA A G ACGATC A C A C TCTATTCTTT C CG CGTACG CGATA C TT GGAAATCACTTGAAACGGGCACATATGTCATTTATTT AA T T GTTCTTATAATACAGCA AATTGTCACTTT C A AA ACCG T A ACAGAAGAATTCT CGA TAC CTA AGAAATACATGG ACATGTATA C A CA TTGAAGCGGTTGGGGGGGGGGGGGGGAGG G T AGTGGCC T TA AGAGATATGAACCTAGCCACGT G GAT TTATCTT T T CT TC T GAACCGTTGCAG G T AAAA A T C ATACAT CATA TC ATAT C C A CA T TGG TG AT TATGATTTGTAAGTCCACTTTTCCTTTCT TG GTTAT . .
blockSeqs : G . C . . . A . . ATATGTAGAA . C . . . . . . . . . A T G T G . . . . C . A AGTAT . A . . TCGA GAC . . . CT . A CGCA . A . TTTTTTC . . . . . GTTT C TG C CA TAACTATATT T CTC T C . AAT . . . . C . A A . C . . . . . . T . . . . . . . CTATTCTTT . . . . A . GGAAATCACAAATGGGTACATATATCATTTATTC G . A CACTTTTATACA . . . . . . . AATA TC . . GGAC . . . C TCAGTCACAGT G . . . . TGACTTTCCCCAACC . GAT TTATCTT . . CT TC . TCGATC T . . . A A . . . ATAT C T . . T T TG AT TATTGATTTGTAAGGCCACTTTTCCTTTC G ATT . .
blockSeqs : G . . . . . A . . GTGTAGAA . T . . . . . . . . . T T G C A . . . . A . G ATT . G . . TCGA GAC . . . T . A CAC . G . AAATC . . . . . GCTT G T A CA TTTATTTTA T C . T . CAT . . . . T . A T . T . . . . . . T . . . . . . . GTATTTT . . . . . . TTAAATCACAAAAGTGTTTACTTACCGGT G . T TTTATG . . . . . . . AATA . . . AGAC . . . . GCACTGAGT T . . . . TACCTCCCCAAACC . . . . . GT TC . TCGATC G . . . A . . . . . . C . . C G TT . CGTTATTTGTGACACACCTCACCCAAT T AT . .
blockSeqs : . . . . . . . . . A T A T . . . . . A . G ATT . G . . TC GAT . . . G . G CA . A . AATA . . . . . GTT A T G CG TTTATTTT T C . C . CGT . . . . C . A A . C . . . . . . A . . . . . . . TTATTTT . . . . . . AATAAATTACCTCACCGTT T . T CACTTT . . . . . . . AATA . . . AGAT . . . . GCGGA G . . . . ATTTCCCTCAACG . . . . . AT C . TTGATG T . . . A . . . . . . . . . T G TG . CATGATTGCCCCCCCCCCCCCCCTTT T GT . .
blockSeqs : . . . . . . . A . . T . . . C . T ATT . A . . . . . . . T . T CG . . . ATA . . . . . . . T G CT CTT A C . C . . . . . . T . T A . T . . . . . . A . . . . . . . CGATTTA . . . . . . GGGAATCACAAAAGGGTAC G . T CACT . . . . . . . AATG . . . CGAC . . . . GCAGT G . . . . TT . . . . . AT T . TCCATC T . . . A . . . . . . . . . T G . . CGTAAATTGTATCCCCCCTCCC G AT
blockSeqs : . . . . A . . . . . . . . . . . . T . . . . . . . . . . . . . A . TTT . . . A . . . . . . A . T A . T . . . . . . T . . . . . . . CCT . . . . . . . . CT . . . . . . . AATG . . . AGA . . . . GCAGT G . . . . TC . . . . . CT . . T A . . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . . . A . . . . . . . . . . . . . . . . . . . . A . . . C . . . . GCAAT . . . . . TC . . . . . C . . . G . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . A . . . . . . . . . . . . . T . . . . G . . . . . . . A . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : *** CGCA** AATN********** GTTT**** TATTATTTT************ CTATTTT****** CGCTTTTAT********* TACTCCAC********************************** TCGATC****** TG AT***
originalCons : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGA-TTAGGG-TAAAA---AA------TTCGC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT---TTAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCT------A----TAT-T-T--AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTTTCTTT-TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCNCTTTTAT------GCAACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG------------T------------T-------C--------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGATN---AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCGTT--TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
finalCons : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTT-A--AATGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TGCGCA--CGA-TTAGGG-TAAAAAATN----------GC-GATTAGGGTAAAGTTAT-TTATT-GTACGATCAAATATGCAA-TGTTTTCATTTTAT-ATCGTTT----TAAATAA-T-TGATATA-NAACTTT---C-GATCAAGCTATTATTTT------------AAAGGGAATTTATG--C---TAG---AGATGCGAT-CGACGTCATGAGAGATC--ACCAATAT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG-TAT--TTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGGCTATTTT------TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC---ACCGG-----------------T--ATGATT-GCA-AATTTGTCGCTTTTAT---------ACTGCAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGGTACTCCAC----------------------------------AAA-ACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTTTCGATC------AACGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTC-TTTTN-TGTTCAT---TTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Alignments
lowQualScore : 111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333333 1 111 11 1 444444444444444444 111 1111 111 111 11111 22222222 1111111 4444444444444 22222222 111111 4444444444444444 111 11111 1111111111 11111 11 111111 333333333333333 111111 11111 1 777777777777777777777777777777777777777777777777777777777777 44444444444444444444444 222222222222 1111111111111 111 222222222222 111111111 11 4444444444444444444444444444444444 1111111 000000000000000000000000000000 111 3333333 11 11111111111111 111111 1111 1 111 11 00000000000000000000000000000000000000000000000000000000 1111111
lowQualScore : 2 2222222 2 33 66666666 0 111 33 0 666666666666666666 777 4 7777 8 99 6 6 6 6 6 111 1 1 3 2 0 3 8 99 6 111 77 5 5 88888888 77 1 77 5 0 1 33333 77 00000000 5 8888 5 99 3333333 5 0 5 3333333333333 5 5 5 0 5 66 5 22222222 1 5 66 333333 1111111111111111 5 1 66 888 333 5 00000 9999999999 66 66 4 66 66 44444 77777777 1 555 4 33 4 55 99 4 4 55 4 4 444444 5 5 5 5 111111111111111 5 66 444444 22222 0 99 555555555555555555555555555555555555555555555555555555555555 88 5 66666666666666666666666 4 000000000000 4 4 55 8888 4 4 6666666666666 222 777 777 0 000000000000 666666666 4 4 00 3333333333333333333333333333333333 3 55 4444444 4 66 666666666666666666666666666666 777 2222222 4 4 88 11 4 0 88888888888888 1 4 9999 4 1 8 222222 9999 66 8888 8 3 4 66 5 222 0 00 44 88 99999999999999999999999999999999999999999999999999999999 9999999 6 8 8
lowQualScore : . ....... . .. ........ . ... .. . .................. ... . .... . .. . . . . . ... . . . . . . . .. . ... .. . . ........ .. . .. . . . ..... .. ........ . .... . .. ....... . . . ............. . . . . . .. . ........ . . .. ...... ................ . . .. ... ... . ..... .......... .. .. . .. .. ..... ........ . ... . .. . .. .. . . .. . . ...... . . . . ............... . .. ...... ..... . .. ............................................................ .. . ....................... . ............ . . .. .... . . ............. ... ... ... . ............ ......... . . .. .................................. . .. ....... . .. .............................. ... ....... . . .. .. . . .............. . . .... . . . ...... .... .. .... . . . .. . ... . .. .. .. ........................................................ ....... . . .
lowQualScore : 5 5555555 5 88 22222222 0 000 88 0 888888888888888888 555 2 0000 0 22 7 7 7 7 7 777 7 4 0 4 7 2 0 22 7 777 00 7 3 33333333 99 7 99 7 7 4 99999 99 77777777 7 0000 7 66 0000000 7 7 7 3333333333333 7 0 0 1 0 99 0 44444444 4 0 00 000000 2222222222222222 0 6 99 888 888 0 44444 4444444444 11 11 4 11 11 88888 22222222 8 888 0 88 0 55 55 4 4 44 4 4 444444 0 0 0 0 888888888888888 0 99 444444 55555 0 22 222222222222222222222222222222222222222222222222222222222222 77 7 77777777777777777777777 0 555555555555 0 0 55 5555 0 0 8888888888888 555 000 000 7 555555555555 000000000 0 0 66 2222222222222222222222222222222222 9 66 4444444 4 11 222222222222222222222222222222 555 5555555 4 4 33 33 4 1 00000000000000 0 4 4444 4 0 9 888888 4444 11 9999 9 3 4 99 1 555 9 99 22 33 88888888888888888888888888888888888888888888888888888888 5555555 7 0 0
consensus : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTTA--AA-TGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGATT-AGGG-TAAAAAA-------TC---GC-GATTAGGGTAAAGTTAT-TTA-TTGTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTTT----TAAATAAT-TGATATA-NAACTTT---C-GATCAAGCTA-T---TAT----TT-T-AAAGGGAATTTATG--CT---AG---AGATGCGAT-CGACG---TCATGAGA----------GATC--ACCAAT--AT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG--TATTTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTAT--TTT-----TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC--ACCGG------------------T--ATGATT-GCA-AATTTGTCACTTTTAT---------AC---TG-CAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG-----T---A-----CT----CCA---C--AAAACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGAT-CAA--CGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCTCCCCCCCCTTCTTTTT-T----GTTCA-TTTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
Reference ( family-3778 ) : ACACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTN-------TGTGCA--ACAC---TGCGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCGTCTTCAGTTCTTGATTAATTTTGTACCAATTAAATAGGAAGCGT-CAGTTTTA--AA-TGACTATAT---GGAGATTTTATTTA-GATTTC-CCGT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCTTA-TG--CGCACGATT-AGGG-TAAAAAA-------TN---GC-GATTAGGGTAAAGTTAT-TTA-TTGTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTTT----TAAATAAT-TGATATA-NAACTTT---C-GATCAAGCTA-T---TAT----TT-T-AAAGGGAATTTATG--CT---AG---AGATGCGAT-CGACG---TCATGAGA----------GATC--ACCAAT--AT-TGT--AA--ACCCT----TTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG--TATTTGGATG-TTAT-GTATAG-NATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTAT--TTT-----TTTTTTTTTCTTG-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAG------ACAAA-----T---TA-C-----TC--ACCGG------------------T--ATGATT-GCA-AATTTGTCGCTTTTAT---------AC---TG-CAAA------------ACT-ATCAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GGTGTTGGAAC-GGG-------GG-GGGGG--GGGG-----T---A-----CT----CCA---C--AAAACGTA---AAG-------AATTGACCTTT-AC-CCACNTTTTTCAAGCGATAG-TGTT---TCGAT-CAA--CGAAGTAANCCCG-TTTT----T-TNA-TA------TA----TTCC--ATTGCCTAT----GA-TT-C-CATTGTCTAATTTCATTTAATCA--ATTTTAAT--GAAGTTAGGTTTGTTGGA--ATGTTCGTAATGA-----------TTTGT-AAG-CCA----CTT---TCCCCCCCCCCCCTTCTTTTN-T----GTTCA-TTTAATCTCGGATTTTCT-GCAGTAG-AATTTAGTTT
gi|1 : ACACGATTTCAAAAAGTC-CGCCATCGT-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGGT--AG-CTT-------TG-GCATCACAC---TGTGT----G-CGA--TA-GGC-ATGTTCGCTT-CCAGTC-TACTC-ATTTTAAAAATATTAATGATTTCCATATTCAGTTTTTGATTAACTTTGTACCAATTAAATAGGAAGCTT-CAGTTTTA--AA-TGACTATAT---GGAGATTTTATTTC-GATTTC-CCGT--A-T-T-TAGCAA--GGAGAC--CC-GCCTCGATCGAAGTTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGTTTA-TAAATGCACGATT-AGGG-TAAAAAAAAAAAATTC---GC-GAGTAGGGTAAAGTTAT-TTA-TTGTACGATCAAATATGCAA-TGTTTTCATTT--TAT-ATCGTTTACTTTAAATAAT-TGATATA-CAACTTT---C-GATCAAGCTA-AAAATAT----TA-T-AAAGGGAATTTATG--CT---AG---AGATGCGAT-CGACG---TCATGAGA----------GATT--GCCAAA--AT-TGT--AA--ACCCT----TTTAACTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTGAA-CGTTC-GTA-T--CACG--CATTTGGATG-TTAT-GTATAG-TATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGACGG-CTAT--TTTCTTTATTTTTTTTTTTTT-ATGC--ACG------ATAT-----TT-CGTGTTG--CCTGAAACAAAT------ATAAA-----T---TA-C-----TC--ACCGG------------------T--ATGATT-GCA-AATTTGTCTCTTTTATGCA------AC---TG-CAAA------------ATT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATA--------TTCA---AT---GTA---AGCAAG----AC----TACT---------GTT-AT-AAAGAGTTTGA--TTT------GCA----GT-------------------GATTTTGGAAC--GG-------GG-GTGGG--GGGA-----T---G-----TT----------C--AAGACGTA---AAG-------AACTGACCTTT-AC-CCATATTTTTCAAGCGATAG-T--------GAT-GAA--CGAAGTAATCCCG-TTTT----T-TCA-TA------TA----ATCC--ATTGTCTAT----GA-TT-C-CATTGTCTAATTTCATTAAGTAA--ATTTTAAT--GAAGTTAGATTTG--AAA--ATGTTCGTAA-GAACTAGGTACAGTTTCTAAAG-TCAAATGTTTGTATCATTGCCCCCCCGTCTTTTG-T----GCTCATTTTAATCTCAGATTTTCTGGCAGCAGTAATTTAGTTT
gi|10 : T---------GC---TG-TAAA------------ACT-ATCAGTGCATCATG-AAA--CA----T-GATTCC-ATTTTG---------------TTCA---AT---GTA---AACT-------C----TACT---------ACT-AT-TAAGAGCTTAA--TTT------GCG----GA-------------------GGTGTTGGAAC-TGG-------GG-GAAGG--GGGA---------A-----TT---------------AATGTAGATAAGTTATCTTAATTGACTCTA-AC-CCACCTTTT-----CGA-AT-TATT---T-------------A--AAGCCCG-GTTT----T-TTA-TA------TACATATTTC--ATAGACTATATATGACTT-C-TATATTCTAATTTCATTTAATCA--GTTT--ATTGGAAGTTAAGTTTGTTGGA--ATGTTT---ATGA-----------TTTGT-AAGTCCA----CTT---TTCCT--------TTCTTTTTGT----GTTCA-TTTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTTT
gi|11 : ctTTTGCTACGA--CA--GA--------T-T-T--GGA-ATGCCTA-TG--CGCACGATT-GGGG-TAAAAA--------TA---GC-GATTAGGGTAAAGTTAT-TTA-TTGTACGATCAAATATG-AA-TGTTTTCATTTAGTA--ATTGTTA-----AAAGACT-TGATATC-CAACTTC------ATCAAGCTAAC---TAT----AT-T-A--------TTA---------AG---GGATGC-AT-CGACG---TCAGGACA----------G-TC--ACCACC--AT-T----AA--ACCCC----TTTTATCT--ACAA-ATAATCATAAAAA-ATCACAAACCTTGAA-CGTTC-GTA-T--CACG--TATTTGGATG-CTAT-GTATAG-TATT-TATGAATG-ACT------CC-GTG-GTG-A-AATTGACGG-CTATTCTTT-----TTTTTTTTTTTTG-ATGC--ACG------ATAT-----TT-gtgtatccatgcattgtatctaactaaataatgtaacactccattaataattcagtgacgatgcataggctatcgaatgtataataa
gi|12 : ------------------T--ATGATT-GCA-AAT--GTC-------T----------C---TG-TAAA------------ATT-ATCATTGTATCATG-AAA--AG-----------------TGGGA-ATA--------TTCA---AT---GTA---AGCTGG----AC----TACTACATGTATAATT-AT-AAACAGTTTAA--TTT------GCA----GT-------------------GGTGTTGGAAA-GGG-------GGTGGGGGTAGGGG-----T---ACCT--CC----CCAAACC--AAAACATA---AAG-------AATTCACCTTT-AC-CCACCTTTTTCAAGCAATAG-TGTT---TCGAT-CAA--CAAAGTAATCCCG-TCTTAAAATAAAA-TA------TA----TTCC--ATTGCCGAT----GA-TTCC-CATTATCTAATTTCATTTAATCA--ATTTTAAC---AAGTCAAATTTGT
gi|13 : atatcatttattCCTT-AC-CCACC--------GAGATAG-TGTT---TCGAT-CAA--CAAAGTTGGCCCA-TTTT----T-TAACTA------TA------CC--ATGGCCTAT----GA-TT-CACATTGTCTAATTTCACTTAATCACAATTTTAAT---AAGT---GTTCAT---A--ATTTTC---ATGA-----------TT------G-CC-----------CCCCCCCCCCCCCTTTTTTTT-TTTTTGTT-A-TTTAATCTCGGATTTTCT-GCAGTAG-AATTCAGTTTc
gi|14 : TTAATGATTTCCGTCTTCAGTTCTTGATTAAATTTGTACCAATTAAATgtgaataaattgtgaattatgtttctaactaaaaattaaacaaatttcatgaacaattcagtgacgacgatataaaacaaattaataatctcgacgaac
gi|14 : TTA-TG--C--ACGATT-AGGG-TAAAAAAAAAT---TC---GC-GATTAGGATAAAGTTAT-TTA-TTGT---ATCAAATATGCAA-TGTTTTCATTT--TAT-ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgcacgattagggtaaaaaaaaattcgcgattaggataaagttatttattgtatcaaatatgcaatgttttcattttatat
gi|15 : ttaatgatttccgtcttcagttcttgattaaatttgtaccaattaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA-TTTT----T-TAAACA------TA----TCCC--ATTGCTTAT----GA-TTTC-CGTTGTCTAATTTCAATTAGTCA--TTTTCAAT--TAAGTTAGTTTTGTTGGAATATGTTCGT--T-A-----------TTTGT-GA---CA-------------CACCTCACCCAATTTTTT-T----GTTCG-TGTAATCTCAGATTTTCT-GCATTAG-AATTTAGTTT
gi|16 : aaTAAT-TGATATA-AAACTTT---C-ATTCAAGCC--------------T-T-AAAGGGAACTTGTT--CT---AGTAGAGATGCGTT-CGACG---T----AGA----------GATC--ACCAAT--GT-TGT--AA--ACCC-----TTTTATTT--G---------CATAAAAT-TTCACAAATCTTGAA-T-TTT-GTA-TAACAAG--GATTTgtgtatccattatgatctaacaattccatgaacaattcagtgttgatggctaccatattaacaa
gi|17 : A--TA-GGC-ATGTCCGCTT-CCAATT-TACTC-ATG---GAAATATTAACGATTTCCATCTTCAGTTCTT--TTAATTTTGTACCAATTAAt
gi|18 : aacggactagggtaaagtgcgttaccctagtccaagatggcaatAA-TTCACAAATCTTGAA-CGTTC-GTA-T--TACG--CATTTGGATG-TTAT-GTAAAG-TATT-TATGTATT-ACT------CT-GTG-GTG-A-AATTGACGG-GTAT--TTT-----TATTTATTTTTTG-ATGC--ACG------ATAT-----TT-
gi|19 : TA--AA-TGACTATAT---GGAGATTTTATTTC-GATCTC-CCAT--A-T-T-TAGCAA--GAAGAC--CC-GCCTCGATTGAAGTTTTG
gi|2 : ACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ATGAAGAT--AG-CTA-------TATGTAG-AAACGGATGAGG----G-TGAAGTGCGGC-ATGTTCGCTT-CCAATT-TACTC-ATT---AAAATATATTTGATTTCCGTCTTCA----------------------ATTAAATGGGAAGCGT-TATTTTTA--AA-TGACTATAT---GAGGATTTTATTTA-GATTTC-CCAT--A-T-T-TAGCAA--GAAAAC--CC-TCC-------AAGTTTTGCTAT-----A--GA--------T-C-G--GGA-GTGTTTG-TG--CAC----------------------------------GATTAGGGTAAAGTTTT-TT--TCG--CGATCAAATATGCAA-TATTTTCATTT--TAT-ATTGTTT-----ACATAAT-TGATATA-GAACTTT---C-AATTAAGCT--T---TAT----TT-T-AAAGAGAATGTATG--CT---AG---AGATGTGAT-CGACG---TAATGAGA----------GATC--ATCAAC--AT-TGT--AA---CCTT----TTTTAATT--GCAA-AT---CATAAAAA-TTCACAAATCTTACA-CGTTT-GTA-T--TACG--TATTTGGATG-TTAT-GTATAG-AATT-TATGAATT-ACT------CT-GTG-GTG-A-AATTGACGG-TTAT--TTT-----TTCTCTCT-CTTG-ATGC--ACGCGTACGATAT-----TT-CATGTTG--CCAGAAACAAATTAAATCACAAAAGTGTT---TA-C-----TT--ACCGG------------------T--ATGATT-GTA-AATTTGTCACT--------------AC---TG-CAAA------------ACT-ATTAGCATATCATG-AAA--CG----T-GATTTT-ATTTTGGGA-ATA--------TTCA---AT---GTACTAAGCTAG----AC----TACT---------ATT-AT-AAAGAGTTTGA--TTT------G-----------------------------------AAC-GGA-------GA-GGGTG---------------------------TCA------AAGACGTA---AAG-------AATTTACCTTT-AC-CCATA-TTTTCAAGGGATAG-TGTT---TTGAT-GAA--CGAAGTAATCCCGTTTTT----T-TAA-TA------TA----TCCC--ATTGCTTAT----GA-TT-C-CATTGTCTAATTTAAATAAATCA--ATGTTAAT--GAAGTCAGATTTGTTTGAATATGTTCGTAA--A------------TTGT-A----------------TCCCCCCTCCC-------TTG-T----GTTCA-TTTAATTTgaatgattagggtccaaactccccgtcgatcaa
gi|3 : CACGATTCCAAAAAGTCGCGCCATCGA-------GTTACGT--CCCTT--------ATTTGTGACG-TCA-A-ACGAGGAT--AG-CTG-------TGTAGA--A-AC---TGCGTTACGG-TGA--TG-GGC-ATGTTCGCTT-CTAATTATATT---------AAATATTAATGATTTCTGTCTTCAGTTCTTGATTAACTTTGTACCAATTAAATAGAAAGCGT-CAGTTTTA--AA-TGAGTGTAT---GGAGATTTTAGTAA-GGTTCC-CC-----------AACAA--GAAGAC--CC-GCCTCGATCGAAGTTTTGCTAC-----A--GA--------T-T-T--GGA-ATGCTT--------------T-A-----AAAAAA-------TC---GC-GATTAGGGTAAAGTTAT-TTA-TTGTACGATAAAATATGCAATTGTTTTCATTT--TAT-ATTG-TT----TAGATAAT-TGATATA-GAACTTT---C-GATCAAGCT--T---TAT----TT-TAAAAGGGAATGTATGCTCT---AG---AGATGCGAT-CGACG---TCATGAGA----------GATC--ACCAAT--AT-TGTTCAA--ACTCTTCAGTTTTATTT--GCAA-ATAATCATAAAAA-TTCACAAATCTTAAA-CGTT--GTA-T--CACG--TATTTGGATG-TTAT-GTGTAG-AATT-TATGAATT-Aaaggtatttagtccatgtacatgtacagtcattatataaataatata
gi|3 : TTAT---------ACAACTG-CAAA------------ACT-ATTAGTGTATCATG-AAA--CGACCGT-GATTTC-ATTTTTGGA-ATA--------TTCA---AT---GTA---A----------T----TACT---------ATT-AA-AAGGAGTTTGA--TTT------GCACTGAGT-------------------GGT-TTGG-----------------GGGGG--GGGG-----T---------------------C--AAGACGTA---AAG-------ATATGACCTTTTAC-CCATGTTTTTCAAGCGATAG-TGATGAACCGTTGCAGAGCAAAGTAATCCCG-TTTT----T-TCA-TA------CA----TTCC--ATTGCCTAT----CA-TT-C-CATTGTTTAATTTCATTAAATCattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacaactgcaaaactattagtgtatcatgaaacgaccgtgatttcatttttggaatattcaatgtaattactattaaaaggagtttgatttgcactgagtggtttgggggggggggtcaagacgtaaagatatgaccttttacccatgtttttcaagcgatagtgatgaaccgttgcagagcaaagtaatcccgttttttcatacattccattgcctatcattccattgtttaatttcattaaatctgaaat
gi|4 : cacgattccaaaaagtcgcgccatcgagttacgtcccttatttgtgacgtcaaacgaggatagctgtgtagaaactgcgttacggtgatgggcatgttcgcttctaattatattaaatattaatgatttctgtcttcagttcttgattaactttgtaccaattaaatagaaagcgtcagttttaaatgagtgtatggagattttagtaaggttccccaacaagaagacccgcctcgatcgaagttttgctacagatttggaatgctttaaaaaaatcgcgattagggtaaagttatttattgtacgataaaatatgcaattgttttcattttatattgtttagataattgatatagaactttcgatcaagctttattttaaaagggaatgtatgctctagagatgcgatcgacgtcatgagagatcaccaatattgttcaaactcttcagttttatttgcaaataatcataaaaattcacaaatcttaaacgttgtatcacgtatttggatgttatgtgtagaatttatgaattaattgtcggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGATTCCAAAAAGTCGCGTCATCGAATCGAGAGTTA-GTGACCCTTCCAATTCTATTTGTGACGATTATATACGAGGATTAAGTCTTAGCACACTCTCCA--GCAC---TGTGT----GGCGA--TA-GGCTATGTTCGCTTTCCAATT-CACTCCATT---AAAATATT--TGATTTCCGTATTCAGTTCTTGATTAGTCTT-------------AGGATACGTTCAGTTTTACAAA-TTACTATATTGGGAAGATTTTATTTC-GATTTC-CCGT--AGTAT-TAGTCA--GAAGCT--CCAGCCTCGATCGAA-TTTTGCTACGA--CA--GA--------T-TCT--GGACATGCCTAATG--CGCACGATT-GGGGCTAAGAAA-------TA---GC-GATTA-GGTAAAG-TAT-TTACTCGTACGATCAAATGTGCAA-TGTTTTCCTTT--TATGATCGCTT----TAAATAATGTGATATACCAACGTTATGCGGATCAAGCTA-T---TATAATGTTAT-AAAAGGACTTTATG--CT---AGT--AGATG-GATACGACG---TCGTGAGA----------GATCAAACAAAC--ATGTGT--AAGTACCCC----TTTTATTCTAACAATATAATCATAAAAA--TCACAAACCTTGAATCGTTCAGTATT--CACGT-TATTTG--TGCTTATGGTATAG-TATTATATGAATTGACT------CCAGTGCGTGAA-AATTGACGGTCTATTCTTT-----TTTTTTTTTTTTGCATGCCGACG------ATAT-----TTCCGTGTTGTTCCTGAAACTATA------ATAAA-----T---TACC-----TC--ACCGT------------------T---TGATT--CG-AAATTGT-GTTCTTATAATACAGCAAC---TG-CGAA------------AC--ATC-GTGTATCATGAAAA--CG----T-GATTTCAATCTTGGG----A--------TTTATC-AT---GTA---AGCAAGAAATACATGGTACT---------ATT-ATAAAAGAGTTTGAC-TTT------GCA----GT-------------------GGTTTTGGAAC-GGG-------GT-GGGGG--Gtgaaat
gi|5 : ----G-CGA--TA-GGC-ATGTACGCTT-CCAATT-TACTC-ATT---AAAATATTAATGATTTCCTTCTTCAGTTC--AATCAATTTTGTACCATTTAATTCGGAA-TGT-CAGTTTTA--AAATGATTATCT---TGAGATTT-ATTTA-GATTTCACTGT--A-T-T-TAGCCACGAAAAAC--TC-GCCTCGA----AGTTT-GCTACGGATTA--GGGTAAAGTTT-T-T--GGA-ATGTTTT-TG--CGC--GATTTAGGG-TAAAGTT-------TTTTCGCTGATTAGGGTAAAGTTATATTA-TTGTACAATCAAATATGCAA--GTTTTCATTT--TAT-TTC--------------------TATA-AAACTTT---C-TTTCAAGCT--------------T-T-AAAGGAAATTTAAG--CTTATAG---AGATGCGAT-CAACA---C----AGA----------GA----ATCAAT--AT-TGT--AA--AACTT----CTTTATTT--GCAT-ATAATCATAAAAATTTCACAAG--CTGAA-C--TT-GTA-T--CACG--TA-TTGGAT--TTAT-CTATAGAAATT-TATGAATT-ATTACGATCCT-GCG-ATG-ACAATTGACGA-C------CT-----TTTTTTTTTCTTG-ATGC--AGG------ATAT-----TG-TGTGTTG--CCT-AAACAAAG------G-GAA-----T---CA-C-----AA--AAGGG------------------TACATAATTAATATAATTTA-----TTTAT---------GA---TGACAAAAATTGTCACTTTACT-ATCAGTGTATCGTG-AAA--CG----T-GATAAG-ATTTTGGGACAGAAGAATTCTCTCA---ATTACG-A---AG-TAG----AT----TACT---------GTT--T-AAAtg
gi|6 : aaacggactagggtaaagtgcgagatcaaatgATTAGGGTAGAGTTAT-TTA-TTGTACGATCAAATATACAA-TGTTNNNNNNN--NNN-NNNNNNN----NNNNNNNN-NNNNNNN-TCNNNNN---N-NNNNNNNNNN-N---NNN----NN-N-NNNNNNNNNNNNNN--NN---NN---NNNNNNNNN-NNNNGGATTAATGAGATCGATGTAGAGATC--ACCAATTGAT-CAT--AA--A------------ATT------------TCATAAA-----------TCTTGAA-CGTT--GCA-T--CACGTATATTTGGATG-T-------TAA-AATT-TATGGCTT-ATT------CC-GTG-GTG-A-AATTGACGG-CGA-----------TTTATTTTTCTTG-ATGC--ACG------ATATCGATATTACGTGTTG--CCTGAAACAAAG------G-AAA-----T---CA-C-----TTGAAACGGGCACATATGTCATTTATTT--ATGATT-TCA-AATTTGTCACTTT----------------------AA------------ACT-ATTAGTGTATCATG-AAA--CG----T-GATTTC-ATTTTGGGA-ATG--------TTCA---AT---GTA---ACCTCG----AC----TACA---------ATT-AT-ATTGAGTGTAA--TTTTCAGTCACA----GT-------------------GGTGTTCGAAC-GGGAGTGGCCGG-GGGTG--GGGG-----TG--A-----CTTTCCCCAAC-C--AAAACGTA---GAG-------AATTGACCTTT-AC-CAACA-TTTACAAGCGATAG-TGTT---TCCAT-CAA--TGAAGTAAACTCG-TTGT----T-TAA-TA------TA----TCCC--ACTGCCTAT----GA-TTCC-CATTGTCTAATTTCATTTAATCA--ATTGTAAT--GAAGTTa
gi|7 : tttTATTTATGATTTC-ACTTTAA-T-TATAGCA---GAA-ACTGCC-GTCTC--TCGAAGTTTTGCTACGA--TATTGA--------TGT-TAGGGA-CTGTTT
gi|8 : tgattagtttttgaAGA----------GATC--ACCAGT--AT-TGT--AT--ACCTA----TTTTACTG--CCAT-ATAATCATAAAA--TCCACAAATCTTGAA-CGTT--GTA-T--TACG--TATTTAGATG-GTAT-GTATAA-AATT-TATGAATT-ACT------CC-GTG-GTG-A-AATTGA-GG----------------TTTTTTTTCTTG-ATGC--ACG------ATAT-----TG-CGTGTTG--CCTGAAACAAAGGAAATCACAAA-----TGGGTA-CATATATC--ATTTA------------------TTCATGATT-GCA-AATTTGTCACTTTTAT---------ACAGCTG-TAAA------------ACT-ATCATGGTAT-ATA-AAA---G----T-GATTTT-------GCA-ATG--------CTCACGAAT---GTA---AGCTAG----A------ACT---------AT--AT-A----GGTTAA--TTTTTGAA-GCG----GTTGGGGGGGGGGGGGGGAGGGGGGGGGGGGG-GGG-------GG-GGGGG--GGGGAGAGAT---ATGAACCTAG--CCA---CGTAAAACGTA---AGG-------AATTGAACTTT-ATTCCACATTTTT-AAGCGATAGTTGTT---gggtatattgtttcgaatgttttttcttacgctggatttatgttggttaaactttttcgcgtcagttaggtgggtaagtatctgttagatctatttttggtgctatctcaagttcaacgattatggcgaaatgtatttcagatgttatgagaatttcctagttgaagatttgatgatactgtcctctcaagcttttaaggataatttaagctttatagaggatttgtggcgatcagcatccagagatcaatgtctcatagtatctggtaaaaacttcatttaatgtattatgcatataatttatcattattttttacaatcgtaaggtcttgaacgggtttcgcatgttatcaactgttatttgggccgatgattgtattctatgagtagttttgattgagattactctacgatccgttgattcagactattgggatctggaccctttcttttcttgat
gi|9 : ---TA-CAAT------------ACTCATCAGTGCATCATG-AAAAACA----TTGATTCC-ATTTTG---------------TTCA---AT---GTA---AACT------------TACT---------ACTCAT-TAAGAGCTTCACATTT------GCA----AT-------------------GGTGTTGGAACTGGG-------GG-AAGGG--GGAA-----TTTCC-----CT----CAA---CG-AAAATGTAGATAAGTTATCTTAAT-GACTCTA-AC-CCACCTTTT------------------------------CGAATTAAGCCCG-GTTC----T-TTA-TAATACATTA----TTCCTCATAGACTATATATGACTT-C-TATATTCTAATTTCATTTA-TCA--GTTT--AT--GAAGTTAAGTTTGTTGGA--ATGTT--TATTGA-----------TTTGT-AAGGCCA----CTT---TTCCT--------TTCTTTTTGT----GTTCA-TTTAATCTCGAATTTTCT-GCAGTGG-AATTTAGTatttgtttgttcatccaatcaagtcatgtatttttgttacttg