lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 888888888888888888888888888888888 2222 11 222 1 33333 111 1 11 11 11 1 1 1 1 1 11 1 1 111 1 222 111 111111 111 11 111111 11111 1111111 2222222222222 11 1111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222 1 333333 111 11 222222 3333333 11 88888888888888888888888888888888 1111 1111 4444 11 11 11 1 3333 22 333333 1 2222222222222 2222 1 22222 222 555555555555 33 222 9999999999999 2 2 2 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 44
lowQualScore : 7 5 7 3 555555555555555555555555555555555 6 7 2222 33 888 5 2 00000 8 8 222 8 0 33 8 99 8 0 11 0 8 66 77 0 0 0 0 0 3 99 0 0 777 3 6 3 8 444 33 66 66 5 9999 5 1 333 333333 99 000 88 444444 5 5 0 5 1 5 2 99999 0 6 5 6666666 0 6666666666666 4 00 8888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 444 0 888888 111 8 3 33 999999 4 5555555 33 2 11111111111111111111111111111111 2 5555 3 4 33 7777 8 0000 33 55 22 3 2222 55 555555 3 0000000000000 2222 3 11111 1 333 555555555555 44 000 2 4 6666666666666 0 4 6 6 0 0 88 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 66
lowQualScore : . . . . ................................. . . .... .. ... . . ..... . . ... . . .. . .. . . .. . . .. .. . . . . . . .. . . ... . . . . ... .. .. .. . .... . . ... ...... .. ... .. ...... . . . . . . . ..... . . . ....... . ............. . .. .... ............................................................................................................................................................................................ .... ... . ...... ... . . .. ...... . ....... .. . ................................ . .... . . .. .... . .... .. .. .. . .... .. ...... . ............. .... . ..... . ... ............ .. ... . . ............. . . . . . . .. .............................................................................................. . ..
lowQualScore : 0 0 3 3 000000000000000000000000000000000 7 0 0000 88 555 0 5 55555 0 0 444 0 6 00 0 66 0 6 00 8 0 66 88 0 0 2 0 0 3 00 0 0 555 3 7 3 0 222 11 44 11 7 4444 7 4 555 555555 22 000 66 444444 0 0 1 0 4 0 5 55555 2 0 0 2222222 7 9999999999999 0 22 0000 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 000 0 888888 000 8 2 88 222222 0 8888888 22 2 55555555555555555555555555555555 5 0000 2 2 00 0000 0 2222 88 88 00 3 3333 77 777777 3 7777777777777 7777 3 00000 0 777 000000000000 88 555 5 0 5555555555555 0 0 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00
consensus : TCACAAAAAGGCCTACG-AC-C----AGGCG-TA-GCTAA-G----TC-----GGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGGA-CT--AAGATGCGTTT-CAC-AAAACAG--AC-TACATTTGCA-CC-CGACT-AAA--TTTATG-GCTT-NAA-TTT-AGGCCT-GC-TC-ATGAC-TAG-GC-GTAA---CTCTTAGTCTGT-AAA-CAGCTAA-A--CGATTAAT-GG-CG-AT--G-AT-GTTGCTTATAT--A-A-GCAT--ATCT---AATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCNTTT---T-ACACGTATA-T-------TTTGAAATAT--AAANGTGN--AANTTCTATGAG-AATGGAAAAAAT---AGTTAAC-CA-----A--T--------AA-AGATG-NA-TGCNAATCAT---TCCGGG-GCCCCTTTTT---GC--G-ACT--TG-TATAT-GT--G-CCCCCC-TCTCTTTT-----AGTAGA-TAGGTATT-ATG-TTCATTTA------N-AAGTTAAA--C---TT-------TG-AG---TAAAAG----AAATAATTGGA-TAC-----TC-T-TGTCCTAA--TTA--A--TANACAATAT-AGTTTTA-TCAAACATA-CA-CGTCAA------ATATACA-GTAGT---TAGCCATA--AATATATCTCCGGAAA----TTTT-TTTA-AATGTCAA--AATNTATTGAA-TTGTTTC--AAAGC-TGCTA----ACTAAT-CA-GAAATAAAACA-AATGTATG-T--AAAA-TCGCA-T-G-GCCC-TNAAAATAC-T-TACGCTTTCTTAAA-AATCTCANGTTNTAACGTGNAGTCGTACAATTATGTATTTGTAANCTTGTAAATTGATGGACTGAACCAAATGATNCCCCCCCAAAAAANTCCNTATCANNNAAAATATTCATATCNGNANTATNNNATTCCTATCAANATAANCTTTTTTTAAAAAAAG--AANTCTGCTTAAAG-GGGCAT
Reference ( gi|1 ) : TCACTAAAATGCCTACG-AC-C----AGCCG-TACGCTAA-G----TC-----GGGCGTAAAAACAGG-ACCAAG--TCAT-ACAATAGGA-CA--AAGATGCGTTT-CAC-AAAACAG--AC-TACATTTGCA-CC-CGGCT-AAA--TTTATG-GTTT-TAA-TTT-AGGCCT-GC-TC-ATGAA-TAG-GC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-A--GGGTTAAT-GG-CG-AT--G-AT-GTTGCTGATAT--A-A-GCAT--ATTT---AATCATGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACATATA-T-------TTTGAAATAT--AAAAGTGT--AATTTCTATGAG-AATGGGAAAAAT---AGCTAAC-TA-----G--T--------AA-GGATG-CA-TGCAAATCAT---TCCGAG-GTTTTTTTTTG--GC--A-ACT--TG-TATAT-GT--G-CCCCTC-TCCCCCTT-----AGTAGACTTAGTAAT-ATGTTTCATTTA------A-AAGTTAAA------TT-------TG-AC---TAAAAG----AAATAATTGGA-TA------TC-T-TGTCTTAA--TTA--A--TAAACAATATAAGTTTTA-TCAAATATA-CAGCGTCAA------ATATACA-GTAAT---TAGCCATA--AGTATATCCCCGAAAA----TTTT-TTGAGAATGTCAA--AATGTATCAAA-TTGTTTT-AAAAGT-TGCTA----GCTAAT-CATGAAATAAAATACAATGTATG-T--AAAA-TTGCA-T-G-GTCC-GGAAAGTACAC-CACATTTTCTTAAACAATCTCAGATTTTAACGTTAAGTC-TAC-ATTATGTA-TTGTAAATTTATAGA-TAAT-GACTGAATCAAATGATGCCCCC-------AATCCCCATCCCCTAAAACATTCATATATGAAATATCTAATTACTATCAATACA-------TTTAAAAAAAACCAAATCTGCTTAAAGTAGGCAT
gi|3 : TCACAAAAAGGCC-ACG-ACAC----AGAGGATAAGCGGA-G----TCCTGTTGGGCGTTAAAACAGG-ACTATG--TCAT-A-AATCGGA-GACTAAGATGCGTTT-CAC-CAAACAACTAC-TACATT-GCAACC-CGTCT-AAA--TT-ATGAGCGTACAA-TTTGAGGCTT-GCATC-ATGAC-TAG-GCTGTAA---CTCTTAGTCTGTTGAA-CATTTAA-ACAAAGTTATTTGG-CGCAT--A-ATTGCTGCTTATAT--ATA-GCAT--ATTTTCTAATTATGCGT------AATC-GGTA-AATA-T-CCTCGTTT---C-ACACGTACA-TGGTACATTTTGAAATATTAAAAAG-GA--GATTTCTATAAGGAATGGAGAAAATTTTAGCTA-C-TA-----A--TCGTTTAAAAA-AGATGGCA-TGCTAAT-AT----CCGGGCGTCTTATTT----GC--G-ATTCATGATATAT-GTTTA-CCCCCC-CCCCCCCTCTTTCAGTAGA-TAAGTATT-ATTGCTCATTTACTGTGGACAGGTTAAAACCCTCTT-------TG-AG---TAAAAG----AAATAATTGGA-TAT-----TC-TGTGTCCTAA--TTG--ACCTATACAAT---AATTTTAGTCAAACATACCATGGTCAAAATTTTATATACATGTAGTATGTAGCCATAATAGTATATCTCCGGGAAACCCTTTC-TTTATAATGTCAAAGAATCGATTGAATTTGTTTC-TAAAG--TGCCA----ACTAATCCAGG-----------AATGTATGTT--AGAACTTGCACT-GAGCCCTGAAAAATAC-T-TACA-GTTCTTAAA
gi|5 : AAAAGGCCTACG-AC-CCTCCAGGCG-TA-GCTAA-GGAAATC-----GG-CGTAAAAGCAGGCACTAAG--TCAT-A-AATCGGAACT--ACGTTGCGTTTTCATGAAAACAG--ACCTAAATTTCCA-CCTCGACTTACA--TTTATG-GCTT-TAAATTT-AGGCCT-TC-TT-CGGAC-TAAAGT-GTAAAATCTCTTAGTCTGT-AAATCAACTAA-A--TGA-TAAT-GG-AG-AC--C-AT-ACTGaa
gi|2 : ttcacggaGCCTACGGAC-C----AGGC--TA-GCTACCG----TT-----GAGGGTAAAA-CAGA---TAAGCGTCATTAAAATCG-A-CT--AAGATGCGTTT--AC-AAAGCGA--AC-TACATT-GCA-AC-CGA-T-AAAATTTTATG-GCGT-AGA-ATT-AGGCATAGC-TCCATGGACTAG-GC-GTAA---CTCTTAGTCTGTGAAA-CAGTTAA-A--CGGTT-AT--G-CG-ATGCG-AT-GTGGCTTA-AT--A-AGGCAT---TCT---AATTATGCTT------A-TC-GG-A-ACTA-TT--TCGTTCAG-T-A-ATGTATAGT-------TTTGAAATAT---AAAGT-----ATTTCTATGAG-AATGG--AAAAT---ATGT-AC-TC-----GTTT--------AACAGATG-TA-TGCTAATCATCCATCCCGG-GCGTCTTTTTT--GC--A-TCT--TG-TATAT-GT--GCCCCCCC-TCTTTTTC-----AATAGA-TGGGTATC-ATG-TTCATT--------A-CAG-TAAACAT---TT-------TGAAG---TAAACG----AAAT-ATTGGATTA------TCTT-TGTCCT-A--TT---G--TATACAAT-T-AGTTTTA--CAAACATC-T--TGTCA-----------ACA-CTAGT---TAG-CATG--AATAT-TCGCGGACCC----TTTT-TTTAAAATGTCAA--ATCG-ATTGAA-TTGTTTTAAAAAGTGTGGTA----A-TAAT-CA-GAAATAAAATAAAATTTATG-TAGAAGA-TCGAA-TCG-GCCC-TTAAAATAC-T-TACGCTTTCTTAA--AAT---ATGTTATAACGTGCAGTCGTACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGA-G-CCCC-------ACTCCCTA---CCCAAAA-ATTCATATCAGAACTATGATATTCCTATCAAAATAAACTTT-TTTAAAAAAAG--AAATCTGCTattttgaaagc
gi|12 : AAAAATCGG-TCTAAG--TCAT-AAAATCGGA-CT--AAGATGCGTTT-CAC-AAAACAG--AC-TACATATGCA-CC-CGAAT-AAA--TTTACG-GCTT-AAA-TTT-AGGCCT-GC-
gi|17 : caGGTGCATTG-CAT-AAAACAC--AC-TACATTTGCA--C-CAGCT-ACA--GTTATG-GCTatgctcat
gi|18 : GAC-TAG-GC-GTAA---CTCTTAGTCTGT-GAA-CAGCCA
gi|7 : TTTGTCTGT-AAA-CAGGTAAGA--CAAATAAT-GGACG-AT--GGAC-GTTGCTG-TAT--A-C-GCAC--ATCT---AATTTTGCTTTAGAAGA-TT-AAGA-ATTA-TTCCTCTTTT---T-GCACGTATA-G-------T---------------GTGT--AAATTCTATAAA-AAT--AAAAAAT---AATT-AC-CATTCCTT--T--------AA-AGATA-AATTGCAAATCCA---TCTG-G-GTCCCTTTT
gi|11 : CCGT-AAA-CGACTAA-A--CGATTAAT-GG-TG-AT--G-AT-TATGCTTATAT--A-G-GCATCTATTT-----T--TTCTT------A-TC-GGTG-ACTA-TTCCTCTTTT---T-ACACGTATA-T-------attt
gi|14 : ggcctactcatgaGATTAAT-GG-TG-CC--G-AT-GTTGCTTAAAT--A-A-GCAT--ATCT---AATTTTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ATATGTATA-T-------TTTCAAATAact
gi|13 : GATTAAG-CG-TG-CT--G-AT-GT-GTTTATATTAG-A-GCAT--ATT----AATTTTGCTT------A-TC-GGTG-ACTATTTCCTCGTTTGAATAATATGTATA-T-------TTTCAAATAc
gi|15 : atcaT---AATTGTGCTT------A-TC-GGTG-AGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT--AAATGTGCGAAAAATCTATGAC-AACGAAAAAAAc
gi|16 : TGCTT------A-TCCGGTGTAGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT--AAATGTG
gi|6 : ttgAAT---CGTTAACACA-----A--T--------AA--------A-TGCAAATCAT---TCCAGG-ACTCTTTTTTGCTGCTCACACC--TG-TTTTT-CT--G-TCCTTT-TTTC---------AATCGG-TTA--AAA-GTG----AGCTA------T-AAGTTAAT------TG-------TG-A-----AAAAG----TTATATTTGGA-TACATGTATC-T-TGTCCTAAATTTAGAA--TAAACAATATT-TTTTTA-TCAAATATA-CA-C--------------------TAGG---TAGCCATA--CTTGTACTTGCGGAAA----CTTT-TC-----TTTCAC--AATATAT
gi|8 : G-TATGTAGT--A-CCCCCCCTTATTTTT-----AGTAGACTAGGTATTCATGTTTCATTTC------C-AAGTTAGA------CTAATCATGTG-TCATTTACAAGTTAAAAGTAA---AA-GA------TC-T-TGTCATAA--CTA--A--TAAACA--ATGAGTTTGT-TCAAACATA-CA-TGT---------ATATAC
gi|4 : TCAA------ATATACA-GTAGT---TAGCCATA--AATATATTCCCAGAAA----CTTT-TT
gi|4 : ttttAA----TTTTATTCA--ATGTCAA--AATCTATTGAA-TTCTT-----AAGC-TGCTATATAGCTAAT-CATAAAATAAAACACAATGTATG-T--AAAA-ATGCA-T-G-GTCC-TGAAA---CACTCTGGTTTATTTGGA-AATCTCAGATTTTAACGT-AA----------TATGTA-TTGTAATCTTGTAAA-TGAT-GATT--ACC------TTCCCCCCCAAAAAAATCCATATCAGAAAAAATA---ATATCTACAA-ATCTAATTCCTATCAATATAACCTTTTTTTA---------AATTCTGCTTAAAG-GGGCATttttcactttatatatttcattaaaaacagctattttgctgcagttacctgtaattttattcaatgtcaaaatctattgaattcttaagctgctatatagctaatcataaaataaaacacaatgtatgtaaaaatgcatggtcctgaaacactctggtttatttggaaatctcagattttaacgtaatatgtattgtaatcttgtaaatgatgattaccttcccccccaaaaaaatccatatcagaaaaaataatatctacaaatctaattcctatcaatataacctttttttaaattctgcttaaaggggcat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TTTATCAAATATACACTAGGTAGCCATACTTGTACTTGCGGAAACTTTTCTTTCACAATATATACATGTATGACTCGTGTTTCACTTAAAACAGCTATTTTCTACAGTTTCCTGAATTTCATTTATCTTTAAATATATT
Unaligned ( gi|10 ): ATTTTATCAAATATACACTAGGTAGCCATACTGTACTTGCGGAAACTTTTCTTTCAAATATAATACATGTATGACTCGTGTTTCACTTAAAACAGCTATTTTTCTACAGTTTTCCTGAATTT
Alignments
lowQualScore : 11 1 1 3333333333333 1 11 22222222 11 11 11 111 1 111 1 11 111 111111 11111 1111111 1111 7777777777777777777777777777777777 1111 2222222 11 1 11 22222222 11 222222222 22222222 7777777777777777777777 11111111 333333333 111 22222 111 3333333 111111 11 1111 11111 1111 2222 1111 1111111 11 4444 11111 111111 1 2 2 1 1 22 111 1 11 1 111 1 33333333333 111 11 11111111 66666666 2222 1 2222 222222222 2
lowQualScore : 88 3 0 0 4444444444444 2 0 33 77777777 2 3 44 11 88 0 8 11 6 6 99 6 7 6 6 555 99 6 6 99 8 8 8 0 8 8 8 444 1 5 6 777 0 5 5 5 11 5 0 0 0 66 5 5 5 000 1 222222 4 4 4 0 4 1 66666 4 4444444 99 9 1111 1 8 2222222222222222222222222222222222 5555 1 8 1111111 22 8 0 55 33 8 8 99999999 8 8 0 99 3 11 8 555555555 0 77777777 3333333333333333333333 44444444 1 0 66 666666666 8 111 22222 1 0 222 88 0 0000000 444444 00 1111 22222 33 66 9999 6666 6 1111 1 8888888 6 88 1111 44444 555555 0 0 3 4 0 0 0 33 2 111 0 11 7 0 444 0 3 11 1 44444444444 7 7 7 11 555 33 6 0 00000000 33333333 1 1 7777 2 7 1 1 88 333 1 6666 444444444 1 0
lowQualScore : .. . . . ............. . . .. ........ . . .. .. .. . . .. . . .. . . . . ... .. . . .. . . . . . . . ... . . . ... . . . . .. . . . . .. . . . ... . ...... . . . . . . ..... . ....... .. . .... . . .................................. .... . . ....... .. . . .. .. . . ........ . . . .. . .. . ......... . ........ ...................... ........ . . .. ......... . ... ..... . . ... .. . ....... ...... .. .... ..... .. .. .... .... . .... . ....... . .. .... ..... ...... . . . . . . . .. . ... . .. . . ... . . .. . ........... . . . .. ... .. . . ........ ........ . . .... . . . . .. ... . .... ......... . .
lowQualScore : 33 2 0 0 8888888888888 5 0 88 55555555 5 8 00 00 88 8 0 00 7 7 22 7 3 7 7 222 22 7 7 00 0 0 0 0 0 0 0 000 4 7 7 222 4 0 0 0 99 0 1 1 4 99 0 0 0 000 0 888888 4 4 4 1 4 0 33333 4 4444444 22 8 3333 0 0 6666666666666666666666666666666666 6666 0 0 0000000 66 0 0 55 88 0 0 22222222 0 0 8 00 2 88 0 888888888 8 00000000 6666666666666666666666 44444444 4 8 88 000000000 0 888 88888 0 8 666 88 8 2222222 444444 00 3333 00000 66 44 4444 7777 6 4444 0 6666666 7 33 7777 88888 222222 0 0 2 2 0 0 0 88 0 000 0 00 0 0 555 0 2 77 0 00000000000 3 3 3 77 333 33 7 7 00000000 33333333 0 0 7777 3 3 0 0 33 000 0 7777 333333333 0 0
consensus : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT--AAA-GT--GNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAAT-CAT---TCCNGGGC-TCTTT-TTT-GCGACT--CG-TATAT-GTN-------CCCCCC-TCT-TTTTTAGTAGAC-TAGGTATT-A----T-GTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAA------ATATACA-CTAGT---TAGCCATA--ANTGTACTTC-CGGAAA----CTTTTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAA--GC-TGCTA----GCTAAT-CATGAAATAAAATACAA-TGTATG-TAGAA--TTGCA-T-G-GCCCT-GAAAATAC-TCAC-GTTTTCTTAAA-AATCTCAGATTTTAACGT--AGTC-TACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGATGCCCCC-------AATCCCTATC---NAAAACATTCATATCTGAAATATCTAATTCCTATCAATATAA-C-TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
Reference ( family-3690 ) : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTN-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CAGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCNTTT---T-ACACGTATA-T-------TTTGAAATAT--AAANGT--GNAANTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCNAAT-CAT---TCCGGGGC-CCCTT-TTT-GCGACT--TG-TATAT-GTG-------CCCCCC-TCT-CTTTTAGTAGA--TAGGTATT-A----T-G-TTCATTTAN-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AC-----TCT-TGTCCTAA--TTA--A--TANACAATAT-AGTTTTA-TCAAACATA-CA-C-GTCAA------ATATACA-GTAGT---TAGCCATA--AATATATCTC-CGGAAA----TTTTTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTC----AAA--GC-TGCTA----ACTAAT-CA-GAAATAAAACA-AA-TGTATG-TAAAA--TCGCA-T-G-GCCCT-NAAAATAC-TTAC-GCTTTCTTAAA-AATCTCANGTTNTAACGTGNAGTCGTACAATTATGTATTTGTAANCTTGTAAATTGATGGACTGAACCAAATGATNCCCCCCCAAAAAANTCCNTATCANNNAAAATATTCATATCNGNANTATNNNATTCCTATCAANATAANCTTTTTTTAAAAAAAG--AANTCTGCTTAAAG-GGGCAT
gi|1 : TCAC--TAAAATGCCTACG-AC-C----AG-------CCGTACG--CTAA-G----TCGGGCGTAAAAACAGG-ACCAAG--TCAT-ACAATAGG-A--CAAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGGC-TAAA--TTTATG-GT-TTT-AATTT-AGGCCT-GC-TC-ATG-AAT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-AGGG--TTAAT-GG-CG-ATG--AT-GTTGCTGATAT--A-AG-CATAT---TTAATCATGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACATATA-T-------TTTGAAATAT--AAAAGT--GTAATTTCTATGAG-AATGGGAAAAAT---A-----GCT-AAC-TA-----GT--------AAGGATGC-A-TGCAAAT-CAT---TCCGAGGT-TTTTT-TTTGGCAACT--TG-TATAT-GTG-------CCCCTC-TCC-CCCTTAGTAGACTTA-GTAAT-A----T-GTTTCATTTAA-------AAGTTAAA--------T------------TT---GA-C-TAAAAGAAATAATTGGAT-A------TCT-TGTCTTAA--TTA--A--TAAACAATATAAGTTTTA-TCAAATATA-CAGC-GTCAA------ATATACA-GTAAT---TAGCCATA--AGTATATCCC-CGAAAA----TTTTTTG--AGAATGTCA-A--AATGTAT-------CAAA-T--TGTTTTA---AAA--GT-TGCTA----GCTAAT-CATGAAATAAAATACAA-TGTATG-TAAAA--TTGCA-T-G-GTCCG-GAAAGTACACCAC-ATTTTCTTAAACAATCTCAGATTTTAACGTTAAGTC-TAC-ATTATGTA-TTGTAAATTTATAGA-TAAT-GACTGAATCAAATGATGCCCCC-------AATCCCCATCCCCTAAAACATTCATATATGAAATATCTAATTACTATCAATACA-------TTTAAAAAAAACCAAATCTGCTTAAAGTAGGCAT
gi|10 : TCAA------ATATACA-CTAGG---TAGCCAT---ACTGTACTTG-CGGAAACTT-TTCTTTC--A-AATATAATA--CATGTA--------TGAC-TCGTGTTTCACTTAAA--AC-AGCTA----
gi|11 : attttaCCGT-AAA-CGACTAA-ACGA--TTAAT-GG-TG-ATG--AT-TATGCTTATAT--A-GG-CAT-----CTATTTTTTCTT------A-TC-GGTG-ACTA-TTCCTCTTTT---T-ACACGTATA-T-------tttttctacagttttcctgaattt
gi|12 : ggcctactcatgaAAAAATCGG-TCTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATATGCA-CC-CGAA-TAAA--TTTACG-GC-TTA-AATTT-AGGCCT-GC-act
gi|13 : caGA--TTAAG-CG-TG-CTG--AT-GT-GTTTATATTAG-AG-CATAT----TAATTTTGCTT------A-TC-GGTG-ACTATTTCCTCGTTTGAATAATATGTATA-T-------TTTCAAATAatgctcat
gi|14 : atcaGA--TTAAT-GG-TG-CCG--AT-GTTGCTTAAAT--A-AG-CATAT---CTAATTTTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ATATGTATA-T-------TTTCAAATAc
gi|15 : TAATTGTGCTT------A-TC-GGTG-AGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT--AAATGTGCGAAAAATCTATGAC-AACGAAAAAAAc
gi|16 : TTGTGCTT------A-TCCGGTGTAGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT--AAATGT--G
gi|17 : GGTGCA-TTGCAT-AAAACAC--A-CTACATTTGCA-CC-AG-C-TACA--GTTATG-GC-T
gi|18 : G-ACT-AGGC-GTAA---CTCTTAGTCTGT-GAA-CAGCCA
gi|2 : GCCTACGGAC-C----AG-------GC-TA-G--CTACCG----TTGAGGGTAAAA-CAGA---TAAGCGTCATTAAAATCG--A--CTAAGATGCG-TTT-AC-AAAGCGA--A-CTACATT-GCA-AC-CGA--TAAAATTTTATG-GC-GTA-GAATT-AGGCATAGC-TCCATGGACT-AGGC-GTAA---CTCTTAGTCTGTGAAA-CAGTTAA-ACGG--TTA-T-G--CG-ATGCGAT-GTGGCTTA-AT--A-AGGCAT-T---CTAATTATGCTT------A-TC-GG-A-ACTA-TT--TCGTTCAG-T-A-ATGTATAGT-------TTTGAAATAT--AAA-GT-----ATTTCTATGAG-AATGGAAAATAT---GTACTCGTTTAAC--------------------AGATGT-A-TGCTAAT-CATCCATCCCGGGCGTCTTT-TTT-GCATCT--TG-TATAT-GTG-------CCCCCCCTCT-TTTTCAATAGA--TGGGTATC-A----T-G-TTCATT-AC-------AG--TAAA-----CATT------------TT---GAAG-TAAACGAAATA-TTGGATTAT-----CTT-TGTCCTA---TTG-----TATACAAT-T-AGTTTTA--CAAACAT--CT-T-GTCAA-----------CA-CTAGT---TAGC-ATG--AATAT---TCGCGGACC----CTTTTTTTAA-AATGTCA-A--A-TCGAT-------TGAA-T--TGTTTT----AAAAAGTGTGGTA----A-TAAT-CA-GAAATAAAATA-AAATTTATG-TAGAAGATCGAA-TCG-GCCCT-TAAAATAC-TTAC-GCTTTCTTAAA-A----TATGTTATAACGTGCAGTCGTACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGA-GCCCC--------ACTCCCTACC---CAAAA-ATTCATATCAGAACTATGATATTCCTATCAAAATAAAC-TTTTTTAAAAAAAG--AAATCTGCT
gi|3 : TCAC--AAAAAGGCC-ACG-ACAC----AGAGGATAAGCGGA-GTCCT---G----TTGGGCGTTAAAACAGG-ACTATG--TCAT-AAA-TCGG-AGACTAAGATGCG-TTTCAC-CAAACAACTA-CTACATT-GCAACC-CGTC-TAAA--TT-ATGAGC-GTACAATTTGAGGCTT-GCATC-ATG-ACT-AGGCTGTAA---CTCTTAGTCTGTTGAA-CATTTAA-ACAAAGTTATTTGG-CGCATA--ATTGCTGCTTATAT--ATAG-CATATTTTCTAATTATGCGT------AATC-GGTA-AATA-T-CCTCGTTT---C-ACACGTACA-TGGTACATTTTGAAATATTAAAAAG---GAGATTTCTATAAGGAATGGAGAAAATTTTA-----GCT-A-C-TA-----ATCGTTTAAAAAAGATGGCA-TGCTAAT--AT---CC--GGGC-GTCTTATTT-GCGATTCATGATATAT-GTTTACCCCCCCCCCC-CCT-CTTTCAGTAGA--TAAGTATT-A----TTG-CTCATTTACTGTGGACAGGTTAAAACCCTC--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCTGTGTCCTAA--TTG--ACCTATACA--AT-AATTTTAGTCAAACATACCA-TGGTCAAAATTTTATATACATGTAGTATGTAGCCATAATAGTATATCTC-CGGGAAACCCTTTCTTT--ATAATGTCA-AAGAATCGAT-------TGAATT--TGTTTCT---AAA--G--TGCCA----ACTAATCCA-G---------G-AA-TGTATGTTAGAAC-TTGCACT-GAGCCCTGAAAAATAC-TTACAG--TTCTTAAA-AA
gi|4 : TCAA------ATATACA-GTAGT---TAGCCATA--AATATATTCC-CAGAAA----CTTTTTT--
gi|4 : ttttAA----TTTTATT--C-AATGTCA-A--AATCTAT-------TGAA-T--TCTT-------AA--GC-TGCTATATAGCTAAT-CATAAAATAAAACACAA-TGTATG-TAAAA--ATGCA-T-G-GTCCT-GAAA-CAC-TCTG-GTTTATTTGGA-AATCTCAGATTTTAACGT----------AAT-ATGTATT-GTAATCTTGTAAAT-GATG-ATT--ACC------TTCCCCCCCAAAAAAATCCATATCAGAAAAAATA---ATATCTACAA-ATCTAATTCCTATCAATATAACCTTTTTTTA---------AATTCTGCTTAAAG-GGGCATtttcactttatatatttcattaaaaacagctattttgctgcagttacctgtaattttattcaatgtcaaaatctattgaattcttaagctgctatatagctaatcataaaataaaacacaatgtatgtaaaaatgcatggtcctgaaacactctggtttatttggaaatctcagattttaacgtaatatgtattgtaatcttgtaaatgatgattaccttcccccccaaaaaaatccatatcagaaaaaataatatctacaaatctaattcctatcaatataacctttttttaaattctgcttaaaggggcat
gi|5 : tttttcaaatatacagtagttagccataaatatattcccagaaactttttttttcactttatatatttcattaaaaacagctattttgctgcagttacctgtTCACGGAAAAAGGCCTACG-AC-CCTCCAG-------GCGTA-G--CTAA-GGAAATCGG-CGTAAAAGCAGGCACTAAG--TCAT--AAATCGGAA--CTACGTTGCGTTTTCATGAAAACAG--ACCTAAATTTCCA-CCTCGACTTACA--TTTATG-GCTTTA-AATTT-AGGCCT-TC-TT-CGG-ACTAAAGT-GTAAAATCTCTTAGTCTGT-AAATCAACTAA-ATGA---TAAT-GG-AG-ACC--AT-ACTGATTTTGA--A-AG-C
gi|6 : tAAT---C-----GTT-AACACA-----AT--------AAA--------TGCAAAT-CAT---TCCAGGAC-TCTTT-TTT-GCTGCT--CA-CACCT-GTT-------TTTCTG-TCC-TTTTT--TCAA--TCGGT--T-AAAAGT-G----AGCTAT-------AAGTTAA----------------------TT---GT-G-AAAAAGTTATATTTGGAT-ACATGTATCT-TGTCCTAAATTTAGAA--TAAACAATAT-TTTTTTA-TCAA----------------------ATATACA-CTAGG---TAGCCATA--CTTGTACTTG-CGGAAA----CTTTTCT------T-TCA-C--AATATAT-------
gi|7 : TTTGTCTGT-AAA-CAGGTAAGACAA--ATAAT-GGACG-ATGG-AC-GTTGCT-GTAT--A-CG-CACAT---CTAATTTTGCTTTAGAAGA-TT-AAGA-ATTA-TTCCTCTTTT---T-GCACGTATA-G-------T---------------GT--GTAAATTCTATAAA-AAT--AAAAAAT---A-----ATT--AC-CATTCCTTT--------AAAGATAA-ATTGCAAATCCAT-----CTGGGT-CCCTT-TT
gi|8 : G-TATGTAGTA-------CCCCCC-CTTATTTTTAGTAGAC-TAGGTATTCA----T-GTTTCATTTCC-------AAGTTAGA-----C--TAATCATGTGTCATTTACAA-GTTAAAAGTAA-AA---GA---------TCT-TGTCATAA--CTA--A--TAAACAATG--AGTTTGT-TCAAACATA-CA-T-GT---------ATATACattt
gi|9 : TCAA------ATATACA-CTAGG---TAGCCATA--CTTGTACTTG-CGGAAA----CTTTTCT------T-TCA-C--AATATATACATGTATGAC-TCGTGTTTCACTTAAA--AC-AGCTA----
Alignments
lowQualScore : 11 1 1 3333333333333 1 11 22222222 11 11 11 111 1 111 1 11 111 111111 11111 1111111 222222222 7777777777777777777777777777777777 1111 1111 1 1 111 22222222 111 11111 1 111 111 2222222 7777777777777777777777 11111111 333333333 111 22222 111 1111111 1111 111 1111 111 2222 1111 1111111 11 222 1111 11 1 1 22 111 1 11 1 111 111 55555555555 2 2 11 11111 333333 222 1 222222 222222222 1
lowQualScore : 88 3 0 0 4444444444444 2 0 33 77777777 2 3 44 11 88 0 8 11 6 6 99 6 7 6 6 555 99 6 6 8 8 8 8 0 8 8 8 444 1 5 1 6 777 0 5 5 5 11 5 0 0 0 66 5 5 000 1 222222 4 4 4 0 4 1 66666 4 4444444 111111111 1 3 1 8 2222222222222222222222222222222222 5555 1 4444 1 6 0 55 444 8 77777777 444 00000 3 0 222 000 0 6666666 3333333333333333333333 44444444 1 0 66 333333333 8 111 22222 1 0 222 88 0 7777777 0000 000 1111 0 1 000 66 888 888 6666 6 1111 1 8888888 6 88 333 5 4444 33 0 9 3 0 2 0 33 111 0 33 0 111 111 6 33333333333 3 3 33 88888 888888 333 1 5 7 888888 444444444 5
lowQualScore : .. . . . ............. . . .. ........ . . .. .. .. . . .. . . .. . . . . ... .. . . . . . . . . . . ... . . . . ... . . . . .. . . . . .. . . ... . ...... . . . . . . ..... . ....... ......... . . . . .................................. .... . .... . . . .. ... . ........ ... ..... . . ... ... . ....... ...................... ........ . . .. ......... . ... ..... . . ... .. . ....... .... ... .... . . ... .. ... ... .... . .... . ....... . .. ... . .... .. . . . . . . .. ... . .. . ... ... . ........... . . .. ..... ...... ... . . . ...... ......... .
lowQualScore : 33 2 0 0 8888888888888 5 0 88 55555555 5 8 00 00 88 8 0 00 7 7 22 7 3 7 7 222 22 7 7 0 0 0 0 0 0 0 0 000 4 7 4 7 222 4 0 0 0 99 0 1 1 4 99 0 0 000 0 888888 4 4 4 1 4 1 33333 4 4444444 777777777 7 8 4 0 6666666666666666666666666666666666 6666 4 8888 0 0 0 55 000 0 00000000 000 22222 2 8 888 000 8 0000000 6666666666666666666666 44444444 4 8 88 222222222 0 888 88888 4 8 666 88 8 6666666 6666 000 3333 1 0 000 44 888 888 7777 6 4444 0 6666666 7 33 333 2 2222 88 0 2 2 8 5 0 88 000 0 22 0 000 000 7 77777777777 7 7 33 00000 333333 333 0 0 3 333333 333333333 5
consensus : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCGGGGCGTCTTTTTT-GCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCC-CGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TAC-ATTATGTA-TTGTAAATTTGTAAA-TAATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---CNAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
Reference ( family-3690 ) : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCNGGGC-TCTTTTTT-GCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTTAGTAGACTAGGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTTC-CGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---CNAAAACATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
gi|1 : TCAC--TAAAATGCCTACG-AC-C----AG-------CCGTACG--CTAA-G----TCGGGCGTAAAAACAGG-ACCAAG--TCAT-ACAATAGG-A--CAAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGGC-TAAA--TTTATG-GT-TTT-AATTT-AGGCCT-GC-TC-ATG-AAT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-AGGG--TTAAT-GG-CG-ATG--AT-GTTGCTGATAT--A-AG-CATAT---TTAATCATGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACATATA-T-------TTTGAAATATA--AAA---GTGTAATTTCTATGAG-AATGGGAAAAAT---A-----GCT-AAC-TA-----GT--------AAGGATGC-A-TGCAAATCAT---TCCGAGGT-TTTTTTTTGGCAACTTGT---ATAT-GTG-------CCCC---TC-TCC-CCCTTAGTAGACTTAGTAAT-ATGTTTCATTTAA-------AAGTTAAA--------T------------TT---GA-C-TAAAAGAAATAATTGGAT-A------TCT-TGTCTTAA--TTA--A--TAAACAATATAAGTTTTA-TCAAATATA-CAGC-GTCAAA----TATACAG---TAAT---TAGCCATAAGTATA---TCCC-CGAAAAT---TT---TTTG--AGAATGTCA-A--AATGTAT-------CAAA-T--TGTTTTA---AAAGTTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAAAA--TTGCA-T-G-GTCCGG-AAAGTACACCAC-ATTTTCTTAAACA-ATCTCAGATTTTAACGTTAAGTC-TAC-ATTATGTA-TTGTAAATTTATAGA-TAAT-GACTGAATCAAATGATGCCCCC------AATCCCCATCCCCTAAAACATTCATATATGAAATATCTAATTACTATCAATAC-A-------TTTAAAAAAAACCAAATCTGCTTAAAGTAGGCAT
gi|10 : -T-ATCAAA----TATACAC---TAGG---TAGCCAT-ACTGTA---CTTG-CGGAAAC---TTTTCTTTC--A-AATATAATA--CATGTA--------TGAC-TCGTGTTTCACTTAAAACAGC----TA
gi|11 : atttCCGT-AAA-CGACTAA-ACGA--TTAAT-GG-TG-ATG--AT-TATGCTTATAT--A-GG-C--AT---CTATTTTTTCTT------A-TC-GGTG-ACTA-TTCCTCTTTT---T-ACACGTATA-T-------tttttctacagttttcctgaattt
gi|12 : ggcctactcatgaAAAAATCGG-TCTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATATGCA-CC-CGAA-TAAA--TTTACG-GC-TTA-AATTT-AGGCCT-GC-act
gi|13 : caGA--TTAAG-CG-TG-CTG--AT-GT-GTTTATATTAG-AG-CATAT----TAATTTTGCTT------A-TC-GGTG-ACTATTTCCTCGTTTGAATAATATGTATA-T-------TTTCAAATAatgctcat
gi|14 : atcaGA--TTAAT-GG-TG-CCG--AT-GTTGCTTAAAT--A-AG-CATAT---CTAATTTTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ATATGTATA-T-------TTTCAAATAc
gi|15 : TAATTGTGCTT------A-TC-GGTG-AGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT---AAATGTGCGAAAAATCTATGAC-AACGAAAAAAAc
gi|16 : TTGTGCTT------A-TCCGGTGTAGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT---AAAT--GTG
gi|17 : GGTGCA-TTGCAT-AAAACAC--A-CTACATTTGCA-CC-AG-C-TACA--GTTATG-GC-T
gi|18 : G-ACT-AGGC-GTAA---CTCTTAGTCTGT-GAA-CAGCCA
gi|2 : GCCTACGGAC-C----AG-------GC-TA-G--CTACCG----TTGAGGGTAAAA-CAGA---TAAGCGTCATTAAAATCG--A--CTAAGATGCG-TTT-AC-AAAGCGA--A-CTACATT-GCA-AC-CGA--TAAAATTTTATG-GC-GTA-GAATT-AGGCATAGC-TCCATGGACT-AGGC-GTAA---CTCTTAGTCTGTGAAA-CAGTTAA-ACGG--TTA-T-G--CG-ATGCGAT-GTGGCTTA-AT--A-AGGCAT-T---CTAATTATGCTT------A-TC-GG-A-ACTA-TT--TCGTTCAG-T-A-ATGTATAGT-------TTTGAAATAT---AAA---GT---ATTTCTATGAG-AATGGAAAATAT---GTACTCGTTTAAC--------------------AGATGT-A-TGCTAATCATCCATCCCGGGCGTCTTTTTT-GCATCTTGT---ATAT-GTG-------CCCC---CCCTCT-TTTTCAATAGA-TGGGTATC-ATGTT-CATT-AC-------AG--TAAA-----CATT------------TT---GAAG-TAAACGAAATA-TTGGATTAT-----CTT-TGTCCTA---TTG-----TATACAAT-T-AGTTTTA--CAAACAT--CT-T-GTCAA---------CAC---TAGT---TAGC-ATGAATAT------TCGCGGACCC---TT---TTTTTAA-AATGTCA-A--A-TCGAT-------TGAA-T--TGTTTTA---AAAAGTG-----TGGTAATAAT-CA-GAAATAAAATAAAATTTATG-TAGAAGATCGAA-TCG-GCCCTT-AAAATAC-TTAC-GCTTTCTTAAA-ATATGTTA-----TAACGTGCAGTCGTACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGA-G-CCCC------ACTCCCTAC---CCAAAA-ATTCATATCAGAACTATGATATTCCTATCAAAATAAAC--TTTTTTAAAAAAAG--AAATCTGCT
gi|3 : TCAC--AAAAAGGCC-ACG-ACAC----AGAGGATAAGCGGA-GTCCT---G----TTGGGCGTTAAAACAGG-ACTATG--TCAT-AAA-TCGG-AGACTAAGATGCG-TTTCAC-CAAACAACTA-CTACATT-GCAACC-CGTC-TAAA--TT-ATGAGC-GTACAATTTGAGGCTT-GCATC-ATG-ACT-AGGCTGTAA---CTCTTAGTCTGTTGAA-CATTTAA-ACAAAGTTATTTGG-CGCATA--ATTGCTGCTTATAT--ATAG-CATATTTTCTAATTATGCGT------AATC-GGTA-AATA-T-CCTCGTTT---C-ACACGTACA-TGGTACATTTTGAAATATTAAAAA---G-GAGATTTCTATAAGGAATGGAGAAAATTTTA-----GCT-A-C-TA-----ATCGTTTAAAAAAGATGGCA-TGCTAAT-AT-----CCGGGCGTCTTATTT-GCGATTCATGATATAT-GTTTACCCCCCCCC---CC-CCT-CTTTCAGTAGA-TAAGTATT-ATTGCTCATTTACTGTGGACAGGTTAAAACCCTC--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCTGTGTCCTAA--TTG--ACCTATACA--AT-AATTTTAGTCAAACATACCA-TGGTCAAAATTTTATATACATGTAGTATGTAGCCATAATAGTATATCTCC-GGGAAACCCTTT---CTTT--ATAATGTCA-AAGAATCGAT-------TGAATT--TGTTTCT---AAAG-TGC----CAAC--TAATCCAGG-----------AATGTATGTTAGAAC-TTGCACT-GAGCCCTGAAAAATAC-TTACAG--TTCTTAAA-A-A
gi|4 : TCAAA----TATACAG---TAGT---TAGCCATAAATATA---TTCC-CAGAAAC---TT---TTTT--
gi|4 : ttttAAT---TT---TATT--C-AATGTCA-A--AATCTAT-------TGAA-T--TCTT-------AAGCTGCTATATAGC--TAAT-CATAAAATAAAACACAATGTATG-TAAAA--ATGCA-T-G-GTCCTG--AAACAC-TCTG-GTTTATTTGGA-A-ATCTCAGATTTTAACGT--AA---------TATGTA-TTGTAATCTTGTAAA-TGATG------ATTACCT--TCCCCCCCAAAAAAATCCATAT---CAGAAAAAATAATATCTACAA-ATCTAATTCCTATCAATAT-AACCTTTTTTTA---------AATTCTGCTTAAAG-GGGCATtttcactttatatatttcattaaaaacagctattttgctgcagttacctgtaattttattcaatgtcaaaatctattgaattcttaagctgctatatagctaatcataaaataaaacacaatgtatgtaaaaatgcatggtcctgaaacactctggtttatttggaaatctcagattttaacgtaatatgtattgtaatcttgtaaatgatgattaccttcccccccaaaaaaatccatatcagaaaaaataatatctacaaatctaattcctatcaatataacctttttttaaattctgcttaaaggggcat
gi|5 : tttttcaaatatacagtagttagccataaatatattcccagaaactttttttttcactttatatatttcattaaaaacagctattttgctgcagttacctgtTCACGGAAAAAGGCCTACG-AC-CCTCCAG-------GCGTA-G--CTAA-GGAAATCGG-CGTAAAAGCAGGCACTAAG--TCAT--AAATCGGAA--CTACGTTGCGTTTTCATGAAAACAG--ACCTAAATTTCCA-CCTCGACTTACA--TTTATG-GCTTTA-AATTT-AGGCCT-TC-TT-CGG-ACTAAAGT-GTAAAATCTCTTAGTCTGT-AAATCAACTAA-ATGA---TAAT-GG-AG-ACC--AT-ACTGATTTTGA--A-AG-C
gi|6 : tAAT---C-----GTT-AACACA-----AT--------AAA--------TGCAAATCAT---TCCAGGAC-TCTTTTTT-GCTGCTCAC---ACCT-GTT-------TTTCTGTCC-T-T-TTTTCAATCGGTTAAA-A---GTG----AGCTAT-------AAGTTAA----------------------TT---GT-G-AAAAAGTTATATTTGGAT-ACATGTATCT-TGTCCTAAATTTAGAA--TAAACAATAT-TTTTTTA-TCAA----------------A----TATACAC---TAGG---TAGCCATACTTGTA---CTTG-CGGAAAC---TT---TTCT------T-TCA-C--AATATAT-------
gi|7 : TTTGTCTGT-AAA-CAGGTAAGACAA--ATAAT-GGACG-ATGG-AC-GTTGCT-GTAT--A-CG-CACAT---CTAATTTTGCTTTAGAAGA-TT-AAGA-ATTA-TTCCTCTTTT---T-GCACGTATA-G-------T------------------GTGTAAATTCTATAAA-AAT--AAAAAAT---A-----ATT--AC-CATTCCTTT--------AAAGATAA-ATTGCAAATCCA---TCTGGGTC-CCTTTT
gi|8 : GT---ATGTAGTA-------CCCC---CC-CTTATTTTTAGTAGACTAGGTATTCATGTTTCATTTCC-------AAGTTAGA-----C--TAATCATGTGTCATTTACAA-GTTAAAAGTAA-AA---GA---------TCT-TGTCATAA--CTA--A--TAAACAATG--AGTTTGT-TCAAACATA-CA-T-GT---A----TATACattt
gi|9 : -T-ATCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTG-CGGAAAC---TT---TTCT------T-TCA-C--AATATATACATGTATGAC-TCGTGTTTCACTTAAAACAGC----TA
Alignments
lowQualScore : 11 1 1 3333333333333 1 11 22222222 11 11 11 111 1 111 1 11 111 111111 11111 1111111 222222222 7777777777777777777777777777777777 1111 111 1 111 22222222 111 11111 1 111 111 2222222 7777777777777777777777 11111111 333333333 111 22222 111 11 1111111 1111 111 1111 111 2222 1111 1111111 11 222 1111 11 1 1 22 111 1 11 1 111 111 555555555555 1 1 11 111 4444444 222222 1 222222 222222222 1
lowQualScore : 88 3 0 0 4444444444444 2 0 33 77777777 2 3 44 11 88 0 8 11 6 6 99 6 7 6 6 555 99 6 6 8 8 8 8 0 8 8 8 444 1 5 1 6 777 0 5 5 5 11 5 0 0 0 66 5 5 5 000 1 222222 4 4 4 0 4 1 66666 4 4444444 111111111 1 3 1 8 2222222222222222222222222222222222 5555 1 444 66 5 55 444 8 77777777 444 00000 3 0 222 000 0 6666666 3333333333333333333333 44444444 1 0 66 333333333 8 111 22222 1 0 222 88 7777777 0000 000 1111 0 1 000 4 888 888 6666 6 1111 1 8888888 6 88 333 5 4444 33 0 9 3 0 2 0 33 111 0 33 0 111 111 6 000000000000 3 3 33 333 5555555 777777 3 7 888888 444444444 5
lowQualScore : .. . . . ............. . . .. ........ . . .. .. .. . . .. . . .. . . . . ... .. . . . . . . . . . . ... . . . . ... . . . . .. . . . . .. . . . ... . ...... . . . . . . ..... . ....... ......... . . . . .................................. .... . ... .. . .. ... . ........ ... ..... . . ... ... . ....... ...................... ........ . . .. ......... . ... ..... . . ... .. ....... .... ... .... . . ... . ... ... .... . .... . ....... . .. ... . .... .. . . . . . . .. ... . .. . ... ... . ............ . . .. ... ....... ...... . . ...... ......... .
lowQualScore : 33 2 0 0 8888888888888 5 0 88 55555555 5 8 00 00 88 8 0 00 7 7 22 7 3 7 7 222 22 7 7 0 0 0 0 0 0 0 0 000 4 7 4 7 222 4 0 0 0 99 0 1 1 4 99 0 0 0 000 0 888888 4 4 4 1 4 1 33333 4 4444444 777777777 7 8 4 0 6666666666666666666666666666666666 6666 4 000 44 0 55 000 0 00000000 000 22222 2 8 888 000 8 0000000 6666666666666666666666 44444444 4 8 88 222222222 0 888 88888 4 8 666 66 6666666 6666 000 3333 1 0 000 3 888 888 7777 6 4444 0 6666666 7 33 333 2 2222 88 0 2 2 8 5 0 88 000 0 22 0 000 000 7 777777777777 3 3 33 000 0000000 777777 3 3 333333 333333333 5
consensus : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
Reference ( family-3690 ) : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCCCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
gi|1 : TCAC--TAAAATGCCTACG-AC-C----AG-------CCGTACG--CTAA-G----TCGGGCGTAAAAACAGG-ACCAAG--TCAT-ACAATAGG-A--CAAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGGC-TAAA--TTTATG-GT-TTT-AATTT-AGGCCT-GC-TC-ATG-AAT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-AGGG--TTAAT-GG-CG-ATG--AT-GTTGCTGATAT--A-AG-CATAT---TTAATCATGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACATATA-T-------TTTGAAATATA--AAA---GTGTAATTTCTATGAG-AATGGGAAAAAT---A-----GCT-AAC-TA-----GT--------AAGGATGC-A-TGCAAATCAT---TCCGAGGTTTTTTTTTGGCAACTTGT---ATAT-GTG-------CCCC---TC-TCC-CCCTTAGTAGACTTAGTAAT-ATGTTTCATTTAA-------AAGTTAAA--------T------------TT---GA-C-TAAAAGAAATAATTGGAT-A------TCT-TGTCTTAA--TTA--A--TAAACAATATAAGTTTTA-TCAAATATA-CAGC-GTCAAA----TATACAG---TAAT---TAGCCATAAGTATA---TCCCCGAAAAT---TT---TTTG--AGAATGTCA-A--AATGTAT-------CAAA-T--TGTTTTA---AAAGTTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAAAA--TTGCA-T-G-GTCCGG-AAAGTACACCAC-ATTTTCTTAAACA-ATCTCAGATTTTAACGTTAAGTC-TACA-TTATGTATT-GTAAATTTATAGAT-AAT-GACTGAATCAAATGATGCCCCC------AATCCCCATCCCC-TAAAACATTCATATATGAAATATCTAATTACTATCAATAC-A-------TTTAAAAAAAACCAAATCTGCTTAAAGTAGGCAT
gi|10 : -T-ATCAAA----TATACAC---TAGG---TAGCCAT-ACTGTA---CTTGCGGAAAC---TTTTCTTTC--A-AATATAATA--CATGTA--------TGAC-TCGTGTTTCACTTAAAACAGC----TA
gi|11 : atttCCGT-AAA-CGACTAA-ACGA--TTAAT-GG-TG-ATG--AT-TATGCTTATAT--A-GG-CAT-----CTATTTTTTCTT------A-TC-GGTG-ACTA-TTCCTCTTTT---T-ACACGTATA-T-------tttttctacagttttcctgaattt
gi|12 : ggcctactcatgaAAAAATCGG-TCTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATATGCA-CC-CGAA-TAAA--TTTACG-GC-TTA-AATTT-AGGCCT-GC-act
gi|13 : caGA--TTAAG-CG-TG-CTG--AT-GT-GTTTATATTAG-AG-CATAT----TAATTTTGCTT------A-TC-GGTG-ACTATTTCCTCGTTTGAATAATATGTATA-T-------TTTCAAATAatgctcat
gi|14 : atcaGA--TTAAT-GG-TG-CCG--AT-GTTGCTTAAAT--A-AG-CATAT---CTAATTTTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ATATGTATA-T-------TTTCAAATAc
gi|15 : TAATTGTGCTT------A-TC-GGTG-AGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT---AAATGTGCGAAAAATCTATGAC-AACGAAAAAAAc
gi|16 : TTGTGCTT------A-TCCGGTGTAGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT---AAAT--GTG
gi|17 : GGTGCA-TTGCAT-AAAACAC--A-CTACATTTGCA-CC-AG-C-TACA--GTTATG-GC-T
gi|18 : G-ACT-AGGC-GTAA---CTCTTAGTCTGT-GAA-CAGCCA
gi|2 : GCCTACGGAC-C----AG-------GC-TA-G--CTACCG----TTGAGGGTAAAA-CAGA---TAAGCGTCATTAAAATCG--A--CTAAGATGCG-TTT-AC-AAAGCGA--A-CTACATT-GCA-AC-CGA--TAAAATTTTATG-GC-GTA-GAATT-AGGCATAGC-TCCATGGACT-AGGC-GTAA---CTCTTAGTCTGTGAAA-CAGTTAA-ACGG--TTA-T-G--CG-ATGCGAT-GTGGCTTA-AT--A-AGGCAT-T---CTAATTATGCTT------A-TC-GG-A-ACTA-TT--TCGTTCAG-T-A-ATGTATAGT-------TTTGAAATAT---AAA---GT---ATTTCTATGAG-AATGGAAAATAT---GTACTCGTTTAAC--------------------AGATGT-A-TGCTAATCATCCATCCCGGGCGTCTTTTTTGCATCTTGT---ATAT-GTG-------CCCC---CCCTCT-TTTTCAATAGA-TGGGTATC-ATGTT-CATT-AC-------AG--TAAA-----CATT------------TT---GAAG-TAAACGAAATA-TTGGATTAT-----CTT-TGTCCTA---TTG-----TATACAAT-T-AGTTTTA--CAAACAT--CT-T-GTCAA---------CAC---TAGT---TAGC-ATGAATAT-----TCGCGGACCC---TT---TTTTTAA-AATGTCA-A--A-TCGAT-------TGAA-T--TGTTTTA---AAAAGTG-----TGGTAATAAT-CA-GAAATAAAATAAAATTTATG-TAGAAGATCGAA-TCG-GCCCTT-AAAATAC-TTAC-GCTTTCTTAAA-ATATGTTA-----TAACGTGCAGTCGTACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGA-GCCCC-------ACTCCCTAC---C-CAAAA-ATTCATATCAGAACTATGATATTCCTATCAAAATAAAC--TTTTTTAAAAAAAG--AAATCTGCT
gi|3 : TCAC--AAAAAGGCC-ACG-ACAC----AGAGGATAAGCGGA-GTCCT---G----TTGGGCGTTAAAACAGG-ACTATG--TCAT-AAA-TCGG-AGACTAAGATGCG-TTTCAC-CAAACAACTA-CTACATT-GCAACC-CGTC-TAAA--TT-ATGAGC-GTACAATTTGAGGCTT-GCATC-ATG-ACT-AGGCTGTAA---CTCTTAGTCTGTTGAA-CATTTAA-ACAAAGTTATTTGG-CGCATA--ATTGCTGCTTATAT--ATAG-CATATTTTCTAATTATGCGT------AATC-GGTA-AATA-T-CCTCGTTT---C-ACACGTACA-TGGTACATTTTGAAATATTAAAAA---G-GAGATTTCTATAAGGAATGGAGAAAATTTTA-----GCT-A-C-TA-----ATCGTTTAAAAAAGATGGCA-TGCTAAT-AT---CC--GGGCGTCTTATTTGCGATTCATGATATAT-GTTTACCCCCCCCC---CC-CCT-CTTTCAGTAGA-TAAGTATT-ATTGCTCATTTACTGTGGACAGGTTAAAACCCTC--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCTGTGTCCTAA--TTG--ACCTATACA--AT-AATTTTAGTCAAACATACCA-TGGTCAAAATTTTATATACATGTAGTATGTAGCCATAATAGTATATCTCCGGGAAACCCTTT---CTTT--ATAATGTCA-AAGAATCGAT-------TGAATT--TGTTTCT---AAAG-TGC----CAAC--TAATCCAGG-----------AATGTATGTTAGAAC-TTGCACT-GAGCCCTGAAAAATAC-TTACAG--TTCTTAAA-A-A
gi|4 : TCAAA----TATACAG---TAGT---TAGCCATAAATATA---TTCCCAGAAAC---TT---TTTT--
gi|4 : ttttAAT---TT---TATT--C-AATGTCA-A--AATCTAT-------TGAA-T--TCTT-------AAGCTGCTATATAGC--TAAT-CATAAAATAAAACACAATGTATG-TAAAA--ATGCA-T-G-GTCCTG--AAACAC-TCTG-GTTTATTTGGA-A-ATCTCAGATTTTAACGT--AA---------TATGTATT-GTAATCTTGTAAAT-GATG------ATTACCT--TCCCCCCCAAAAAAATCCATAT---CAGAAAA-AATAATATCTACAA-ATCTAATTCCTATCAATAT-AACCTTTTTTTA---------AATTCTGCTTAAAG-GGGCATtttcactttatatatttcattaaaaacagctattttgctgcagttacctgtaattttattcaatgtcaaaatctattgaattcttaagctgctatatagctaatcataaaataaaacacaatgtatgtaaaaatgcatggtcctgaaacactctggtttatttggaaatctcagattttaacgtaatatgtattgtaatcttgtaaatgatgattaccttcccccccaaaaaaatccatatcagaaaaaataatatctacaaatctaattcctatcaatataacctttttttaaattctgcttaaaggggcat
gi|5 : tttttcaaatatacagtagttagccataaatatattcccagaaactttttttttcactttatatatttcattaaaaacagctattttgctgcagttacctgtTCACGGAAAAAGGCCTACG-AC-CCTCCAG-------GCGTA-G--CTAA-GGAAATCGG-CGTAAAAGCAGGCACTAAG--TCAT--AAATCGGAA--CTACGTTGCGTTTTCATGAAAACAG--ACCTAAATTTCCA-CCTCGACTTACA--TTTATG-GCTTTA-AATTT-AGGCCT-TC-TT-CGG-ACTAAAGT-GTAAAATCTCTTAGTCTGT-AAATCAACTAA-ATGA---TAAT-GG-AG-ACC--AT-ACTGATTTTGA--A-AG-C
gi|6 : tAAT---C-----GTT-AACACA-----AT--------AAA--------TGCAAATCAT---TCCAGGAC-TCTTTTTTGCTGCTCAC---ACCT-GTT-------TTTCTGTCC-T-T-TTTTCAATCGGTTAAA-A---GTG----AGCTAT-------AAGTTAA----------------------TT---GT-G-AAAAAGTTATATTTGGAT-ACATGTATCT-TGTCCTAAATTTAGAA--TAAACAATAT-TTTTTTA-----------------TCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTGCGGAAAC---TT---TTCT------T-TCA-C--AATATAT-------
gi|7 : TTTGTCTGT-AAA-CAGGTAAGACAA--ATAAT-GGACG-ATGG-AC-GTTGCT-GTAT--A-CG-CACAT---CTAATTTTGCTTTAGAAGA-TT-AAGA-ATTA-TTCCTCTTTT---T-GCACGTATA-G-------T------------------GTGTAAATTCTATAAA-AAT--AAAAAAT---A-----ATT--AC-CATTCCTTT--------AAAGATAA-ATTGCAAATCCA---TCTGGGTC-CCTTTT
gi|8 : GT---ATGTAGTA-------CCCC---CC-CTTATTTTTAGTAGACTAGGTATTCATGTTTCATTTCC-------AAGTTAGA-----C--TAATCATGTGTCATTTACAA-GTTAAAAGTAA-AA---GA---------TCT-TGTCATAA--CTA--A--TAAACAATG--AGTTTGT-TCAAACATA-CA-T-GT---A----TATACattt
gi|9 : -T-ATCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTGCGGAAAC---TT---TTCT------T-TCA-C--AATATATACATGTATGAC-TCGTGTTTCACTTAAAACAGC----TA
Alignments
lowQualScore : 11 1 1 3333333333333 1 11 22222222 11 11 11 111 1 111 1 11 111 111111 11111 1111111 222222222 7777777777777777777777777777777777 1111 111 1 111 22222222 111 11111 1 111 111 2222222 7777777777777777777777 11111111 333333333 111 22222 111 11 1111111 1111 111 1111 111 2222 1111 1111111 11 222 1111 11 1 1 22 111 1 11 1 111 111 555555555555 1 1 11 111 4444444 222222 1 222222 222222222 1
lowQualScore : 88 3 0 0 4444444444444 2 0 33 77777777 2 3 44 11 88 0 8 11 6 6 99 6 7 6 6 555 99 6 6 8 8 8 8 0 8 8 8 444 1 5 1 6 777 0 5 5 5 11 5 0 0 0 66 5 5 5 000 1 222222 4 4 4 0 4 1 66666 4 4444444 111111111 1 3 1 8 2222222222222222222222222222222222 5555 1 444 66 5 55 444 8 77777777 444 00000 3 0 222 000 0 6666666 3333333333333333333333 44444444 1 0 66 333333333 8 111 22222 1 0 222 88 7777777 0000 000 1111 0 1 000 0 888 888 6666 6 1111 1 8888888 6 88 333 5 4444 33 0 9 3 0 2 0 33 111 0 33 0 111 111 6 000000000000 3 3 33 333 5555555 777777 3 7 888888 444444444 5
lowQualScore : .. . . . ............. . . .. ........ . . .. .. .. . . .. . . .. . . . . ... .. . . . . . . . . . . ... . . . . ... . . . . .. . . . . .. . . . ... . ...... . . . . . . ..... . ....... ......... . . . . .................................. .... . ... .. . .. ... . ........ ... ..... . . ... ... . ....... ...................... ........ . . .. ......... . ... ..... . . ... .. ....... .... ... .... . . ... . ... ... .... . .... . ....... . .. ... . .... .. . . . . . . .. ... . .. . ... ... . ............ . . .. ... ....... ...... . . ...... ......... .
lowQualScore : 33 2 0 0 8888888888888 5 0 88 55555555 5 8 00 00 88 8 0 00 7 7 22 7 3 7 7 222 22 7 7 0 0 0 0 0 0 0 0 000 4 7 4 7 222 4 0 0 0 99 0 1 1 4 99 0 0 0 000 0 888888 4 4 4 1 4 1 33333 4 4444444 777777777 7 8 4 0 6666666666666666666666666666666666 6666 4 000 44 0 55 000 0 00000000 000 22222 2 8 888 000 8 0000000 6666666666666666666666 44444444 4 8 88 222222222 0 888 88888 4 8 666 66 6666666 6666 000 3333 1 0 000 7 888 888 7777 6 4444 0 6666666 7 33 333 2 2222 88 0 2 2 8 5 0 88 000 0 22 0 000 000 7 777777777777 3 3 33 000 0000000 777777 3 3 333333 333333333 5
consensus : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
Reference ( family-3690 ) : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
gi|1 : TCAC--TAAAATGCCTACG-AC-C----AG-------CCGTACG--CTAA-G----TCGGGCGTAAAAACAGG-ACCAAG--TCAT-ACAATAGG-A--CAAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGGC-TAAA--TTTATG-GT-TTT-AATTT-AGGCCT-GC-TC-ATG-AAT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-AGGG--TTAAT-GG-CG-ATG--AT-GTTGCTGATAT--A-AG-CATAT---TTAATCATGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACATATA-T-------TTTGAAATATA--AAA---GTGTAATTTCTATGAG-AATGGGAAAAAT---A-----GCT-AAC-TA-----GT--------AAGGATGC-A-TGCAAATCAT---TCCGAGGTTTTTTTTTGGCAACTTGT---ATAT-GTG-------CCCC---TC-TCC-CCCTTAGTAGACTTAGTAAT-ATGTTTCATTTAA-------AAGTTAAA--------T------------TT---GA-C-TAAAAGAAATAATTGGAT-A------TCT-TGTCTTAA--TTA--A--TAAACAATATAAGTTTTA-TCAAATATA-CAGC-GTCAAA----TATACAG---TAAT---TAGCCATAAGTATA---TCCCCGAAAAT---TT---TTTG--AGAATGTCA-A--AATGTAT-------CAAA-T--TGTTTTA---AAAGTTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAAAA--TTGCA-T-G-GTCCGG-AAAGTACACCAC-ATTTTCTTAAACA-ATCTCAGATTTTAACGTTAAGTC-TACA-TTATGTATT-GTAAATTTATAGAT-AAT-GACTGAATCAAATGATGCCCCC------AATCCCCATCCCC-TAAAACATTCATATATGAAATATCTAATTACTATCAATAC-A-------TTTAAAAAAAACCAAATCTGCTTAAAGTAGGCAT
gi|10 : -T-ATCAAA----TATACAC---TAGG---TAGCCAT-ACTGTA---CTTGCGGAAAC---TTTTCTTTC--A-AATATAATA--CATGTA--------TGAC-TCGTGTTTCACTTAAAACAGC----TA
gi|11 : atttCCGT-AAA-CGACTAA-ACGA--TTAAT-GG-TG-ATG--AT-TATGCTTATAT--A-GG-CAT-----CTATTTTTTCTT------A-TC-GGTG-ACTA-TTCCTCTTTT---T-ACACGTATA-T-------tttttctacagttttcctgaattt
gi|12 : ggcctactcatgaAAAAATCGG-TCTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATATGCA-CC-CGAA-TAAA--TTTACG-GC-TTA-AATTT-AGGCCT-GC-act
gi|13 : caGA--TTAAG-CG-TG-CTG--AT-GT-GTTTATATTAG-AG-CATAT----TAATTTTGCTT------A-TC-GGTG-ACTATTTCCTCGTTTGAATAATATGTATA-T-------TTTCAAATAatgctcat
gi|14 : atcaGA--TTAAT-GG-TG-CCG--AT-GTTGCTTAAAT--A-AG-CATAT---CTAATTTTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ATATGTATA-T-------TTTCAAATAc
gi|15 : TAATTGTGCTT------A-TC-GGTG-AGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT---AAATGTGCGAAAAATCTATGAC-AACGAAAAAAAc
gi|16 : TTGTGCTT------A-TCCGGTGTAGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT---AAAT--GTG
gi|17 : GGTGCA-TTGCAT-AAAACAC--A-CTACATTTGCA-CC-AG-C-TACA--GTTATG-GC-T
gi|18 : G-ACT-AGGC-GTAA---CTCTTAGTCTGT-GAA-CAGCCA
gi|2 : GCCTACGGAC-C----AG-------GC-TA-G--CTACCG----TTGAGGGTAAAA-CAGA---TAAGCGTCATTAAAATCG--A--CTAAGATGCG-TTT-AC-AAAGCGA--A-CTACATT-GCA-AC-CGA--TAAAATTTTATG-GC-GTA-GAATT-AGGCATAGC-TCCATGGACT-AGGC-GTAA---CTCTTAGTCTGTGAAA-CAGTTAA-ACGG--TTA-T-G--CG-ATGCGAT-GTGGCTTA-AT--A-AGGCAT-T---CTAATTATGCTT------A-TC-GG-A-ACTA-TT--TCGTTCAG-T-A-ATGTATAGT-------TTTGAAATAT---AAA---GT---ATTTCTATGAG-AATGGAAAATAT---GTACTCGTTTAAC--------------------AGATGT-A-TGCTAATCATCCATCCCGGGCGTCTTTTTTGCATCTTGT---ATAT-GTG-------CCCC---CCCTCT-TTTTCAATAGA-TGGGTATC-ATGTT-CATT-AC-------AG--TAAA-----CATT------------TT---GAAG-TAAACGAAATA-TTGGATTAT-----CTT-TGTCCTA---TTG-----TATACAAT-T-AGTTTTA--CAAACAT--CT-T-GTCAA---------CAC---TAGT---TAGC-ATGAATAT-----TCGCGGACCC---TT---TTTTTAA-AATGTCA-A--A-TCGAT-------TGAA-T--TGTTTTA---AAAAGTG-----TGGTAATAAT-CA-GAAATAAAATAAAATTTATG-TAGAAGATCGAA-TCG-GCCCTT-AAAATAC-TTAC-GCTTTCTTAAA-ATATGTTA-----TAACGTGCAGTCGTACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGA-GCCCC-------ACTCCCTAC---C-CAAAA-ATTCATATCAGAACTATGATATTCCTATCAAAATAAAC--TTTTTTAAAAAAAG--AAATCTGCT
gi|3 : TCAC--AAAAAGGCC-ACG-ACAC----AGAGGATAAGCGGA-GTCCT---G----TTGGGCGTTAAAACAGG-ACTATG--TCAT-AAA-TCGG-AGACTAAGATGCG-TTTCAC-CAAACAACTA-CTACATT-GCAACC-CGTC-TAAA--TT-ATGAGC-GTACAATTTGAGGCTT-GCATC-ATG-ACT-AGGCTGTAA---CTCTTAGTCTGTTGAA-CATTTAA-ACAAAGTTATTTGG-CGCATA--ATTGCTGCTTATAT--ATAG-CATATTTTCTAATTATGCGT------AATC-GGTA-AATA-T-CCTCGTTT---C-ACACGTACA-TGGTACATTTTGAAATATTAAAAA---G-GAGATTTCTATAAGGAATGGAGAAAATTTTA-----GCT-A-C-TA-----ATCGTTTAAAAAAGATGGCA-TGCTAAT-AT---CC--GGGCGTCTTATTTGCGATTCATGATATAT-GTTTACCCCCCCCC---CC-CCT-CTTTCAGTAGA-TAAGTATT-ATTGCTCATTTACTGTGGACAGGTTAAAACCCTC--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCTGTGTCCTAA--TTG--ACCTATACA--AT-AATTTTAGTCAAACATACCA-TGGTCAAAATTTTATATACATGTAGTATGTAGCCATAATAGTATATCTCCGGGAAACCCTTT---CTTT--ATAATGTCA-AAGAATCGAT-------TGAATT--TGTTTCT---AAAG-TGC----CAAC--TAATCCAGG-----------AATGTATGTTAGAAC-TTGCACT-GAGCCCTGAAAAATAC-TTACAG--TTCTTAAA-A-A
gi|4 : TCAAA----TATACAG---TAGT---TAGCCATAAATATA---TTCCCAGAAAC---TT---TTTT--
gi|4 : ttttAAT---TT---TATT--C-AATGTCA-A--AATCTAT-------TGAA-T--TCTT-------AAGCTGCTATATAGC--TAAT-CATAAAATAAAACACAATGTATG-TAAAA--ATGCA-T-G-GTCCTG--AAACAC-TCTG-GTTTATTTGGA-A-ATCTCAGATTTTAACGT--AA---------TATGTATT-GTAATCTTGTAAAT-GATG------ATTACCT--TCCCCCCCAAAAAAATCCATAT---CAGAAAA-AATAATATCTACAA-ATCTAATTCCTATCAATAT-AACCTTTTTTTA---------AATTCTGCTTAAAG-GGGCATtttcactttatatatttcattaaaaacagctattttgctgcagttacctgtaattttattcaatgtcaaaatctattgaattcttaagctgctatatagctaatcataaaataaaacacaatgtatgtaaaaatgcatggtcctgaaacactctggtttatttggaaatctcagattttaacgtaatatgtattgtaatcttgtaaatgatgattaccttcccccccaaaaaaatccatatcagaaaaaataatatctacaaatctaattcctatcaatataacctttttttaaattctgcttaaaggggcat
gi|5 : tttttcaaatatacagtagttagccataaatatattcccagaaactttttttttcactttatatatttcattaaaaacagctattttgctgcagttacctgtTCACGGAAAAAGGCCTACG-AC-CCTCCAG-------GCGTA-G--CTAA-GGAAATCGG-CGTAAAAGCAGGCACTAAG--TCAT--AAATCGGAA--CTACGTTGCGTTTTCATGAAAACAG--ACCTAAATTTCCA-CCTCGACTTACA--TTTATG-GCTTTA-AATTT-AGGCCT-TC-TT-CGG-ACTAAAGT-GTAAAATCTCTTAGTCTGT-AAATCAACTAA-ATGA---TAAT-GG-AG-ACC--AT-ACTGATTTTGA--A-AG-C
gi|6 : tAAT---C-----GTT-AACACA-----AT--------AAA--------TGCAAATCAT---TCCAGGAC-TCTTTTTTGCTGCTCAC---ACCT-GTT-------TTTCTGTCC-T-T-TTTTCAATCGGTTAAA-A---GTG----AGCTAT-------AAGTTAA----------------------TT---GT-G-AAAAAGTTATATTTGGAT-ACATGTATCT-TGTCCTAAATTTAGAA--TAAACAATAT-TTTTTTA-----------------TCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTGCGGAAAC---TT---TTCT------T-TCA-C--AATATAT-------
gi|7 : TTTGTCTGT-AAA-CAGGTAAGACAA--ATAAT-GGACG-ATGG-AC-GTTGCT-GTAT--A-CG-CACAT---CTAATTTTGCTTTAGAAGA-TT-AAGA-ATTA-TTCCTCTTTT---T-GCACGTATA-G-------T------------------GTGTAAATTCTATAAA-AAT--AAAAAAT---A-----ATT--AC-CATTCCTTT--------AAAGATAA-ATTGCAAATCCA---TCTGGGTC-CCTTTT
gi|8 : GT---ATGTAGTA-------CCCC---CC-CTTATTTTTAGTAGACTAGGTATTCATGTTTCATTTCC-------AAGTTAGA-----C--TAATCATGTGTCATTTACAA-GTTAAAAGTAA-AA---GA---------TCT-TGTCATAA--CTA--A--TAAACAATG--AGTTTGT-TCAAACATA-CA-T-GT---A----TATACattt
gi|9 : -T-ATCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTGCGGAAAC---TT---TTCT------T-TCA-C--AATATATACATGTATGAC-TCGTGTTTCACTTAAAACAGC----TA
blockSeqs : GG T G A AGAGGATAA G . TC AAGGAAA G A CA CG TA A GA T G CT C T A T ACT AT A T C G A A C G A T AAT G T G G AGT T A C CG T TA T G A TTT T TAGAAG A C T T T GAATA G GGTACAT AAATGT C A A G TTTAGCTACTAATCGTTTAAA GCA T CCA CC G AT GAT A TTACCCCC TGT CTCT T TTC GCT TGTGGAC ACTAATCATGTGTCA TACAAGT A AT TACATGTA G AAT ACC T AT GT ACCATG ATTT ATG TATG C TAT CCT TTC TAA A AAG G ACATGTA T CG CTT C TATA AA C G A A T GA TC A AA . GC AT G GCAGTCGTACAA T T GG GA CCAAAAA CAG . T AACCT AAAAAAG .
blockSeqs : . T . . CTCCAG G . . ACCG G A T . A . . . . . . T . . AA . . . . . . . . . . . . T . A . T . . . G . . . . A . T . . . . . G AGT . . TAAAAA T A T . AATTACCATTCCTTT AAT T . CA G GA . . G . CTTA C TC TTT . AACCCTCT GAAG A TT TTAT . A GAA T AT T ACAT . . G A . . . AT G TA C . . CG CTT G . . . T A C . C CT . A . AG A . AA . . G T . CC . . AAAC .
blockSeqs : . . . AG . . . G . G A . A . . . . . . T . . TC . . . . . . . . . . . . . . A . T . . . . . . . . A . T . . . . . G T . . AAAT T T T . GTACTCGTTTAAC TA A . TG . TG . . T . CCT . TT TT . ACATT GAG T T TAT . A A A T . CTT . . T T . . . A G A C . . . . C . . . . . . . . T . . . GT A
blockSeqs : . . . . . . . . . . . . . C . . . . . . . . . . . . . A . T . . . . . . . . A . G . . . . . T T . . AAA T . A . CGTTAACACAAT . A . . . . . A . TT . . . . . GTG T A . . . . A G . . . . T A . . . C G A C . . . . C .
blockSeqs : . . . . . . . A . . . . . A . T . . . . . . . . . . G . . . . . T G . . . . . . G T . . . . . C A . . . . . .
blockSeqs : . . A A . . . . . . . . . . A . . . . . G G . . . . G T . . . . . C A .
blockSeqs : . . . . . . . . . A . . . . . G C . . . . .
blockSeqs : T . . . . . T T . .
blockSeqCons : N** AAAT***** GTACTCGTTTAA********************** A*** CCT** ACCC****************** TAC****** A**** GT* ** CT***** A***
originalCons : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGAC-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT---AAA---GTGNAATTTCTATGAG-AATGGAAAAAAT---A-----GTT-AAC-CA-----AT--------AAAGATGN-A-TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCC---CC-TCT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-----C--T------------TT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTTTA-TCAAACATA-CA-T-GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
finalCons : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CGN--TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATATAAAT-----GTGNAATTTCTATGAG-AATGGAAAAAATGTACTCGTTTAA----------------------AAAGATGA---TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCC---CCCCT--TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAACCC------------------TT---GA-G-TAAAAGAAATAATTGGATAC------TCT-TGTCCTAA--TTAA----TAAACAATGT-AGTTTTA--CAAACATCT-----GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTTA---AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
Alignments
lowQualScore : 11 1 1 3333333333333 1 11 22222222 11 11 11 3333 1 111 1 11 111 111111 11111 1111111 1111 66666666666666666666666666666 22222 111 1 111 22222222 11 1 111 111 2222222 77777777777777777777777777777 333333333 111 22222 2222 11 44444444 1111 111 1111 111 2222 1111 1111111 11 222 1111 11 1 1 22 111 1 11 1 111 111 555555555555 1 1 11 111 4444444 222222 1 222222 222222222 1
lowQualScore : 88 3 0 0 4444444444444 2 0 33 77777777 2 3 44 11 88 0 8 11 6 6 99 6 7 6 6 0000 99 6 6 8 8 8 8 0 8 8 8 444 1 5 1 6 777 0 5 5 5 11 5 0 0 0 66 5 5 000 1 222222 4 4 4 0 4 1 66666 4 4444444 99 7 1111 1 8 8 00000000000000000000000000000 99999 1 444 66 5 55 444 8 77777777 11 8 8 3 0 222 000 0 6666666 99999999999999999999999999999 1 0 66 666666666 8 111 22222 1 1111 8 99 33333333 0000 000 1111 0 1 000 0 888 888 6666 6 1111 1 8888888 6 88 333 5 4444 33 0 9 3 0 2 0 33 111 0 33 0 111 111 6 000000000000 3 3 33 333 5555555 777777 3 7 888888 444444444 5
lowQualScore : .. . . . ............. . . .. ........ . . .. .. .. . . .. . . .. . . . . .... .. . . . . . . . . . . ... . . . . ... . . . . .. . . . . .. . . ... . ...... . . . . . . ..... . ....... .. . .... . . . ............................. ..... . ... .. . .. ... . ........ .. . . . . ... ... . ....... ............................. . . .. ......... . ... ..... . .... . .. ........ .... ... .... . . ... . ... ... .... . .... . ....... . .. ... . .... .. . . . . . . .. ... . .. . ... ... . ............ . . .. ... ....... ...... . . ...... ......... .
lowQualScore : 33 2 0 0 8888888888888 5 0 88 55555555 5 8 00 00 88 8 0 00 7 7 22 7 3 7 7 2222 22 7 7 0 0 0 0 0 0 0 0 000 4 7 4 7 222 4 0 0 0 99 0 1 1 4 99 0 0 000 0 888888 4 4 4 1 4 1 33333 4 4444444 22 8 3333 4 0 0 22222222222222222222222222222 00000 4 000 44 0 55 000 0 00000000 00 0 0 2 8 888 000 8 0000000 88888888888888888888888888888 4 8 88 000000000 0 888 88888 4 0000 0 00 33333333 6666 000 3333 1 0 000 7 888 888 7777 6 4444 0 6666666 7 33 333 2 2222 88 0 2 2 8 5 0 88 000 0 22 0 000 000 7 777777777777 3 3 33 000 0000000 777777 3 3 333333 333333333 5
consensus : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CG--N-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT--AAATGT--GNAATTTCTATGAG-AATGGAAAA-AAT----G-T--AC---T---CGTTTAAAAA-GATG--A--TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCCC--CC-CT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-C-----------CTT---T---GA-G-TAAAAGAAATAATTGGAT-AT-----TCT-TGTCCTAA--TTA--A--TAAACAATAT-AGTTT-TA--CAAACATAC--C---GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
Reference ( family-3690 ) : TCAC--AAAAAGGCCTACG-AC-C----AG-------GCGTA-G--CTAA-G----TCGGGCGTAAAAACAGG-ACTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CG--N-TAAA--TTTATG-GC-TTA-AATTT-AGGCCT-GC-TC-ATG-ACT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-ACGA--TTAAT-GG-CG-ATG--AT-GTTGCTTATAT--A-AG-CATAT---CTAATTNTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACGTATA-T-------TTTGAAATAT--AAATGT--GNAATTTCTATGAG-AATGGAAAA-AAT----G-T--AC---T---CGTTTAAAAA-GATG--A--TGCAAATCAT---TCCGGGGCGTCTTTTTTGCGACTCGT---ATAT-GTN-------CCCCC--CC-CT-TTTTCAGTAGACTAAGTATT-ATGTTTCATTTAC-------AAGTTAAA-C-----------CCT---T---GA-G-TAAAAGAAATAATTGGAT-AC-----TCT-TGTCCTAA--TTA--A--TAAACAATGT-AGTTT-TA--CAAACAT-C--T---GTCAAA----TATACAC---TAGT---TAGCCATAANTGTA---CTCGCGGAAAC---TT---TTTT--A-AATGTCA-A--AATNTAT-------TGAA-T--TGTTTCA---AAAGCTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAGAA--TTGCA-T-G-GCCCTG-AAAATAC-TCAC-GTTTTCTTAAA-A-ATCTCAGATTTTAACGT--AGTC-TACA-TTATGTATT-GTAAATTTGTAAAT-AATGGACTGAATCAAATGATGCCCCC------AATCCCTAT---C-NAAAA-ATTCATATCTGAAATATCTAATTCCTATCAATAT-AAC--TTTTTTAAAAAAAG--AAATCTGCTTAAAGTGGGCAT
gi|1 : TCAC--TAAAATGCCTACG-AC-C----AG-------CCGTACG--CTAA-G----TCGGGCGTAAAAACAGG-ACCAAG--TCAT-ACAATAGG-A--CAAAGATGCG-TTTCAC-AAAACAG--A-CTACATTTGCA-CC-CG--GCTAAA--TTTATG-GT-TTT-AATTT-AGGCCT-GC-TC-ATG-AAT-AGGC-GTAA---CTCTTAGTCTGT-AAA-CGGCTAA-AGGG--TTAAT-GG-CG-ATG--AT-GTTGCTGATAT--A-AG-CATAT---TTAATCATGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ACACATATA-T-------TTTGAAATAT--AAAAGT--GTAATTTCTATGAG-AATGGGAAA-AATA---G-CTAAC---T---AGT----AAG-GATGC-A--TGCAAATCAT---TCCGAGGTTTTTTTTTGGCAACTTGT---ATAT-GTG-------CCCCT--CT-CC-CCCTTAGTAGACTTAGTAAT-ATGTTTCATTTAA-------AAGTTAAA--------------TT---T---GA-C-TAAAAGAAATAATTGGAT-A------TCT-TGTCTTAA--TTA--A--TAAACAATATAAGTTT-TAT-CAAATATACAGC---GTCAAA----TATACAG---TAAT---TAGCCATAAGTATA---TCCCCGAAAAT---TT---TTTG--AGAATGTCA-A--AATGTAT-------CAAA-T--TGTTTTA---AAAGTTGC----TAGC--TAAT-CATGAAATAAAATACAATGTATG-TAAAA--TTGCA-T-G-GTCCGG-AAAGTACACCAC-ATTTTCTTAAACA-ATCTCAGATTTTAACGTTAAGTC-TACA-TTATGTATT-GTAAATTTATAGAT-AAT-GACTGAATCAAATGATGCCCCC------AATCCCCATCCCC-TAAAACATTCATATATGAAATATCTAATTACTATCAATAC-A-------TTTAAAAAAAACCAAATCTGCTTAAAGTAGGCAT
gi|10 : T-T--T---ATCAAA----TATACAC---TAGG---TAGCCAT-ACTGTA---CTTGCGGAAAC---TTTTCTTTC--A-AATATAATA--CATGTA--------TGAC-TCGTGTTTCACTTAAAACAGC----TA
gi|11 : atCCGT-AAA-CGACTAA-ACGA--TTAAT-GG-TG-ATG--AT-TATGCTTATAT--A-GG-C--AT---CTATTTTTTCTT------A-TC-GGTG-ACTA-TTCCTCTTTT---T-ACACGTATA-T-------tttttctacagttttcctgaattt
gi|12 : ggcctactcatgaAAAAATCGG-TCTAAG--TCAT-AAAATCGG-A--CTAAGATGCG-TTTCAC-AAAACAG--A-CTACATATGCA-CC-CGA-A-TAAA--TTTACG-GC-TTA-AATTT-AGGCCT-GC-act
gi|13 : caGA--TTAAG-CG-TG-CTG--AT-GT-GTTTATATTAG-AG-CATAT----TAATTTTGCTT------A-TC-GGTG-ACTATTTCCTCGTTTGAATAATATGTATA-T-------TTTCAAATAatgctcat
gi|14 : atcaGA--TTAAT-GG-TG-CCG--AT-GTTGCTTAAAT--A-AG-CATAT---CTAATTTTGCTT------A-TC-GGTG-ACTA-TTCCTCGTTT---T-ATATGTATA-T-------TTTCAAATAc
gi|15 : TAATTGTGCTT------A-TC-GGTG-AGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT--AAATGTGCGAAAAATCTATGAC-AACGAAAAA-AAc
gi|16 : TTGTGCTT------A-TCCGGTGTAGTA-TTCTTCTTTT---G-ACATGTATA-T-------TTTGAAATAT--AAATGT--G
gi|17 : GGTGCA-TTGCAT-AAAACAC--A-CTACATTTGCA-CC-AG--C-TACA--GTTATG-GC-T
gi|18 : G-ACT-AGGC-GTAA---CTCTTAGTCTGT-GAA-CAGCCA
gi|2 : GCCTACGGAC-C----AG-------GC-TA-G--CTACCG----TTGAGGGTAAAA-CAGA---TAAGCGTCATTAAAATCG--A--CTAAGATGCG-TTT-AC-AAAGCGA--A-CTACATT-GCA-AC-CG--A-TAAAATTTTATG-GC-GTA-GAATT-AGGCATAGC-TCCATGGACT-AGGC-GTAA---CTCTTAGTCTGTGAAA-CAGTTAA-ACGG--TTA-T-G--CG-ATGCGAT-GTGGCTTA-AT--A-AGGCAT-T---CTAATTATGCTT------A-TC-GG-A-ACTA-TT--TCGTTCAG-T-A-ATGTATAGT-------TTTGAAATAT--AAA-GT-----ATTTCTATGAG-AATGGAAAA-TAT----G-T--AC---T---CGTTTAACA--GATGT-A--TGCTAATCATCCATCCCGGGCGTCTTTTTTGCATCTTGT---ATAT-GTG-------CCCCC--CCTCT-TTTTCAATAGA-TGGGTATC-ATGTT-CATT-AC-------AG--TAAA-CA----------TTT---T---GAAG-TAAACGAAATA-TTGGATTAT-----CTT-TGTCCTA---TTG-----TATACAAT-T-AGTTT-TA--CAAACAT-C--TT--GTCAA---------CAC---TAGT---TAGC-ATGAATAT-----TCGCGGACCC---TT---TTTTTAA-AATGTCA-A--A-TCGAT-------TGAA-T--TGTTTTA---AAAAGTG-----TGGTAATAAT-CA-GAAATAAAATAAAATTTATG-TAGAAGATCGAA-TCG-GCCCTT-AAAATAC-TTAC-GCTTTCTTAAA-ATATGTTA-----TAACGTGCAGTCGTACAATTATGTATTTGTAAATTTGTAAATTAATGGACTGAATCAAATGA-GCCCC-------ACTCCCTAC---C-CAAAA-ATTCATATCAGAACTATGATATTCCTATCAAAATAAAC--TTTTTTAAAAAAAG--AAATCTGCT
gi|3 : TCAC--AAAAAGGCC-ACG-ACAC----AGAGGATAAGCGGA-GTCCT---G----TTGGGCGTTAAAACAGG-ACTATG--TCAT-AAA-TCGG-AGACTAAGATGCG-TTTCAC-CAAACAACTA-CTACATT-GCAACC-CG--TCTAAA--TT-ATGAGC-GTACAATTTGAGGCTT-GCATC-ATG-ACT-AGGCTGTAA---CTCTTAGTCTGTTGAA-CATTTAA-ACAAAGTTATTTGG-CGCATA--ATTGCTGCTTATAT--ATAG-CATATTTTCTAATTATGCGT------AATC-GGTA-AATA-T-CCTCGTTT---C-ACACGTACA-TGGTACATTTTGAAATATTAAAAAG---GAGATTTCTATAAGGAATGGAGAA-AATTTTAGCT--AC---TAATCGTTTAAAAAAGATGGCA--TGCTAAT-AT---CC--GGGCGTCTTATTTGCGATTCATGATATAT-GTTTACCCCCCCCCC--CC-CT-CTTTCAGTAGA-TAAGTATT-ATTGCTCATTTACTGTGGACAGGTTAAAAC-----------CCTCTTT---GA-G-TAAAAGAAATAATTGGAT-AT-----TCTGTGTCCTAA--TTG--ACCTATACAA--T-AATTT-TAGTCAAACATAC--CATGGTCAAAATTTTATATACATGTAGTATGTAGCCATAATAGTATATCTCCGGGAAACCCTTT---CTTT--ATAATGTCA-AAGAATCGAT-------TGAATT--TGTTTCT---AAAG-TGC----CAAC--TAATCCAGG-----------AATGTATGTTAGAAC-TTGCACT-GAGCCCTGAAAAATAC-TTACAG--TTCTTAAA-A-A
gi|4 : TCAAA----TATACAG---TAGT---TAGCCATAAATATA---TTCCCAGAAAC---TT---TTTT--
gi|4 : ttttAAT---TT---TATT--C-AATGTCA-A--AATCTAT-------TGAA-T--TCTT-------AAGCTGCTATATAGC--TAAT-CATAAAATAAAACACAATGTATG-TAAAA--ATGCA-T-G-GTCCTG--AAACAC-TCTG-GTTTATTTGGA-A-ATCTCAGATTTTAACGT--AA---------TATGTATT-GTAATCTTGTAAAT-GATG------ATTACCT--TCCCCCCCAAAAAAATCCATAT---CAGAAAA-AATAATATCTACAA-ATCTAATTCCTATCAATAT-AACCTTTTTTTA---------AATTCTGCTTAAAG-GGGCATtttcactttatatatttcattaaaaacagctattttgctgcagttacctgtaattttattcaatgtcaaaatctattgaattcttaagctgctatatagctaatcataaaataaaacacaatgtatgtaaaaatgcatggtcctgaaacactctggtttatttggaaatctcagattttaacgtaatatgtattgtaatcttgtaaatgatgattaccttcccccccaaaaaaatccatatcagaaaaaataatatctacaaatctaattcctatcaatataacctttttttaaattctgcttaaaggggcat
gi|5 : tttttcaaatatacagtagttagccataaatatattcccagaaactttttttttcactttatatatttcattaaaaacagctattttgctgcagttacctgtTCACGGAAAAAGGCCTACG-AC-CCTCCAG-------GCGTA-G--CTAA-GGAAATCGG-CGTAAAAGCAGGCACTAAG--TCAT--AAATCGGAA--CTACGTTGCGTTTTCATGAAAACAG--ACCTAAATTTCCA-CCTCGACT-TACA--TTTATG-GCTTTA-AATTT-AGGCCT-TC-TT-CGG-ACTAAAGT-GTAAAATCTCTTAGTCTGT-AAATCAACTAA-ATGA---TAAT-GG-AG-ACC--AT-ACTGATTTTGA--A-AG-C
gi|6 : t--A--TGCAAATCAT---TCCAGGAC-TCTTTTTTGCTGCTCAC---ACCT-GTT-------TTTCTGTCC-TT-TTTTCAATCGGTTAAA-A---GTG----AGCTAT-------AAGTTAA----------------T---T---GT-G-AAAAAGTTATATTTGGAT-ACATGTATCT-TGTCCTAAATTTAGAA--TAAACAATAT-TTTTT-TA------------------TCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTGCGGAAAC---TT---TTCT------T-TCA-C--AATATAT-------
gi|7 : aatcgttaacacaataaTTTGTCTGT-AAA-CAGGTAAGACAA--ATAAT-GGACG-ATGG-AC-GTTGCT-GTAT--A-CG-CACAT---CTAATTTTGCTTTAGAAGA-TT-AAGA-ATTA-TTCCTCTTTT---T-GCACGTAT-----------------------AGTGT--GTAAATTCTATAAA-AATAAAAAATAAT------T--ACCATT---CCTTT--AAA-GATA--AATTGCAAATCCA---TCTGGGTC-CCTTTT
gi|8 : GT---ATGTAGTA-------CCCCC--CC-TTATTTTTAGTAGACTAGGTATTCATGTTTCATTTCC-------AAGTTAGA-CTAATCATGTGTCAT---TTACAA-GTTAAAAGTAA-AA---GA---------TCT-TGTCATAA--CTA--A--TAAACAATG--AGTTTGTT--CAAACATACA-T---GT---A----TATACattt
gi|9 : T-T--T---ATCAAA----TATACAC---TAGG---TAGCCATACTTGTA---CTTGCGGAAAC---TT---TTCT------T-TCA-C--AATATATACATGTATGAC-TCGTGTTTCACTTAAAACAGC----TA